scitex 2.13.0__py3-none-any.whl → 2.15.1__py3-none-any.whl

scitex/scholar/docs/to_claude/bin/general/claude_emacs_server.sh

@@ -1,192 +0,0 @@
-#!/bin/bash
-# -*- coding: utf-8 -*-
-# Timestamp: "2025-05-20 05:20:10 (ywatanabe)"
-# File: ./.claude/to_claude/bin/claude_emacs_server.sh
-
-THIS_DIR="$(cd $(dirname ${BASH_SOURCE[0]}) && pwd)"
-LOG_PATH="$THIS_DIR/.$(basename $0).log"
-echo > "$LOG_PATH"
-
-BLACK='\033[0;30m'
-LIGHT_GRAY='\033[0;37m'
-GREEN='\033[0;32m'
-YELLOW='\033[0;33m'
-RED='\033[0;31m'
-NC='\033[0m' # No Color
-
-echo_info() { echo -e "${LIGHT_GRAY}$1${NC}"; }
-echo_success() { echo -e "${GREEN}$1${NC}"; }
-echo_warning() { echo -e "${YELLOW}$1${NC}"; }
-echo_error() { echo -e "${RED}$1${NC}"; }
-# ---------------------------------------
-
-THIS_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-LOG_PATH="$THIS_DIR/.$(basename "$0").log"
-# Get login name
-if [ -n "$CLAUDE_ID" ]; then
-    LOGIN_NAME="CLAUDE-$(echo "$CLAUDE_ID" | cut -d'-' -f1)"
-else
-    LOGIN_NAME="$USER"
-fi
-EMACS_SOCKET="/home/ywatanabe/.emacs.d/server/server"
-EMACS_CLIENT="/opt/emacs-30.1/bin/emacsclient"
-
-# Helper
-# ----------------------------------------
-
-claude_emacs_client() {
-    DISPLAY=:0 && "$EMACS_CLIENT" --socket-name="$EMACS_SOCKET" "$@"
-}
-
-# Frame Management
-# ----------------------------------------
-
-claude_emacs_manage_frame() {
-    # Check if emacs server is available
-    if ! claude_emacs_client -e 't' &>/dev/null; then
-        echo_error "Please ask the user to start emacs server by M-x server-start"
-        exit 1
-    fi
-
-    # First ensure only one frame exists (if any)
-    claude_emacs_client -e '(let ((frames (filtered-frame-list (lambda (f) (equal (frame-parameter f '\''name) "claude-frame")))))
-                            (when (> (length frames) 1)
-                              (dolist (frame (cdr frames))
-                                (delete-frame frame))))'
-    # Then check if we need to create a frame
-    local frame_exists=$(claude_emacs_client -e '(if (filtered-frame-list (lambda (f) (equal (frame-parameter f '\''name) "claude-frame"))) "exists" "none")')
-    if [[ "$frame_exists" == "none" ]]; then
-        claude_emacs_client \
-            --create-frame \
-            --no-wait \
-            --frame-parameters='((name . "claude-frame") (left . 800) (top . 100) (width . 80) (height . 35))' \
-            -e '(message "Start working in dedicated frame")'
-    fi
-}
-
-# Arbitrary Emacs Lisp Code
-# ----------------------------------------
-
-claude_emacs_run_progn() {
-    local elisp_code="$*"
-
-    # Check if emacs server is available
-    if ! claude_emacs_client -e 't' &>/dev/null; then
-        echo_error "Please start emacs server by M-x server-start"
-        exit 1
-    fi
-
-    # Execute the Elisp code
-    local result=$(claude_emacs_client -e "$elisp_code")
-    echo "$result"
-}
-
-# Discussion
-# ----------------------------------------
-
-claude_ensure_discussion_buffer() {
-    claude_emacs_client -e '(progn
-      (let ((buffer (get-buffer-create "*CLAUDE-DISCUSSION*")))
-        (with-current-buffer buffer
-          (when (= (buffer-size) 0)
-            (insert ";; CLAUDE DISCUSSION BUFFER\n")
-            (insert ";; ======================\n"))
-          (lisp-interaction-mode))))' >/dev/null
-}
-
-claude_discussion_send() {
-    local comment="$*"
-    local final_comment="[$LOGIN_NAME] $comment"
-    claude_emacs_manage_frame >/dev/null
-    claude_ensure_discussion_buffer >/dev/null
-    claude_emacs_client \
-        -e "(with-current-buffer \"*CLAUDE-DISCUSSION*\"
-              (goto-char (point-max))
-              (insert \"\n\n$final_comment\"))" >/dev/null
-    echo_success "Message sent: $final_comment"
-}
-
-
-claude_discussion_read() {
-    claude_emacs_manage_frame >/dev/null
-    claude_ensure_discussion_buffer >/dev/null
-    local raw_content=$(claude_emacs_client -e '(with-current-buffer "*CLAUDE-DISCUSSION*"
-                                 (substring-no-properties (buffer-string)))')
-
-    # Process the output to remove the 'nil' prefix and text properties
-    # This extracts just the actual content string
-    if [[ "$raw_content" == nil* ]]; then
-        # If it starts with 'nil', remove it and parse the actual string content
-        echo_success "$raw_content" | sed 's/^nil//' | grep -o '".*"' | sed 's/^"//;s/"$//'
-    else
-        # Otherwise just return the raw content
-        echo_success "$raw_content"
-    fi
-}
-
-# Usage information
-usage() {
-    echo "Usage: $0 [OPTIONS] [MESSAGE]"
-    echo
-    echo "Options:"
-    echo "  -s, --send MESSAGE     Send a message to Claude discussion"
-    echo "  -r, --read             Read the content of Claude discussion"
-    echo "  -e, --eval CODE        Evaluate Emacs Lisp code"
-    echo "  -h, --help             Display this help message"
-    echo
-    echo "Examples:"
-    echo "  $0 -s \"Check this function\"              # Send a message explicitly"
-    echo "  $0 -r                                    # Read discussion content"
-    echo "  $0 -e \"(+ 2 3)\"                          # Evaluate Elisp code"
-    echo
-    exit 1
-}
-
-
-# Main function to parse arguments and execute commands
-main() {
-    if [[ $# -eq 0 ]]; then
-        usage
-        exit 1
-    fi
-    # Parse arguments
-    while [[ $# -gt 0 ]]; do
-        case "$1" in
-            -s|--send)
-                shift
-                if [[ $# -eq 0 ]]; then
-                    echo_error "Error: No message provided after -s/--send option."
-                    usage
-                fi
-                claude_discussion_send "$*"
-                exit 0
-                ;;
-            -r|--read)
-                claude_discussion_read
-                exit 0
-                ;;
-            -e|--eval)
-                shift
-                if [[ $# -eq 0 ]]; then
-                    echo_error "Error: No Elisp code provided after -e/--eval option."
-                    usage
-                fi
-                claude_emacs_run_progn "$*"
-                exit 0
-                ;;
-            -h|--help)
-                usage
-                ;;
-            *)
-                echo_error "'$1' is not acceptable option. Please see usage."
-                usage
-                ;;
-        esac
-        shift
-    done
-}
-
-# Execute main function with all arguments
-main "$@" 2>&1 | tee -a "$LOG_PATH"
-
-# EOF

scitex/scholar/docs/to_claude/bin/general/create_github_release.sh

@@ -1,36 +0,0 @@
-#!/bin/bash
-# Script to create GitHub release for gpu-pac v0.1.0
-
-echo "==================================="
-echo "Creating GitHub Release for v0.1.0"
-echo "==================================="
-
-# Check if gh CLI is installed
-if ! command -v gh &> /dev/null; then
-    echo "GitHub CLI (gh) is not installed."
-    echo "Please install it from: https://cli.github.com/"
-    exit 1
-fi
-
-# Check if we're in the right directory
-if [ ! -f "pyproject.toml" ]; then
-    echo "Error: Please run from the gPAC root directory"
-    exit 1
-fi
-
-# Push the tag
-echo "Pushing tag v0.1.0 to GitHub..."
-git push origin v0.1.0
-
-# Create the release
-echo "Creating GitHub release..."
-gh release create v0.1.0 \
-    --title "gpu-pac v0.1.0 - First Release" \
-    --notes-file RELEASE_NOTES_v0.1.0.md \
-    --verify-tag \
-    dist/gpu_pac-0.1.0-py3-none-any.whl \
-    dist/gpu_pac-0.1.0.tar.gz
-
-echo ""
-echo "✅ Release created successfully!"
-echo "View at: https://github.com/ywatanabe1989/gPAC/releases/tag/v0.1.0"

scitex/scholar/docs/to_claude/bin/general/find_errors.sh

@@ -1,75 +0,0 @@
-#!/bin/bash
-# -*- coding: utf-8 -*-
-# Timestamp: "2025-06-05 15:31:18 (ywatanabe)"
-# File: ./gPAC/find_errors.sh
-
-THIS_DIR="$(cd $(dirname ${BASH_SOURCE[0]}) && pwd)"
-LOG_PATH="$THIS_DIR/.$(basename $0).log"
-echo > "$LOG_PATH"
-
-BLACK='\033[0;30m'
-LIGHT_GRAY='\033[0;37m'
-GREEN='\033[0;32m'
-YELLOW='\033[0;33m'
-RED='\033[0;31m'
-NC='\033[0m' # No Color
-
-echo_info() { echo -e "${LIGHT_GRAY}$1${NC}"; }
-echo_success() { echo -e "${GREEN}$1${NC}"; }
-echo_warning() { echo -e "${YELLOW}$1${NC}"; }
-echo_error() { echo -e "${RED}$1${NC}"; }
-# ---------------------------------------
-
-NC='\033[0m'
-
-
-
-find_error() {
-    ## Error
-    error_dirs=$(find . -type d -name "FINISHED_ERROR")
-    echo_error "Failed jobs:"
-    # echo "$error_dirs" | sed 's|_out/FINISHED_ERROR|.py|g'
-    for error_dir in $error_dirs; do
-        script_name=$(echo $error_dir | sed 's|_out/FINISHED_ERROR|.py|g')
-        echo_error "Error in: $script_name"
-
-        last_run_path=$(find "$error_dir" -maxdepth 1 -name "2025Y-*" -type d | sort | tail -n1)
-
-        if [ -n "$last_run_path" ]; then
-            log_dir="$last_run_path/logs"
-            stdout="$log_dir/stdout.log"
-            stderr="$log_dir/stderr.log"
-
-            # if [ -f "$stdout" ]; then
-            #     echo_success "stdout:"
-            #     echo_success "$(cat $stdout)"
-            # fi
-
-            if [ -f "$stderr" ]; then
-                echo_error "stderr:"
-                echo_error "$(cat $stderr)"
-            fi
-        fi
-        echo
-    done
-}
-
-
-find_running() {
-    running_dirs=$(find . -type d -name "RUNNING")
-    echo_warning "Running jobs:"
-    echo "$running_dirs" | sed 's|_out/RUNNING|.py|g'
-}
-
-
-find_success() {
-    success_dirs=$(find . -type d -name "FINISHED_SUCCESS")
-    echo_success "Successful jobs:"
-    echo "$success_dirs" | sed 's|_out/FINISHED_SUCCESS|.py|g'
-}
-
-find_error
-find_running
-find_success
-
-# EOF

scitex/scholar/docs/to_claude/bin/general/rename.sh

@@ -1,145 +0,0 @@
-#!/bin/bash
-# -*- coding: utf-8 -*-
-# Timestamp: "2025-05-11 13:30:54 (ywatanabe)"
-# File: ./.claude/scripts/rename.sh
-
-THIS_DIR="$(cd $(dirname ${BASH_SOURCE[0]}) && pwd)"
-LOG_PATH="$THIS_DIR/.$(basename $0).log"
-echo > "$LOG_PATH"
-
-GREEN='\033[0;32m'
-YELLOW='\033[0;33m'
-RED='\033[0;31m'
-NC='\033[0m' # No Color
-# ---------------------------------------
-
-# Function to display usage information
-show_usage() {
-    echo "Usage: $0 [options] <search_pattern> <replacement> [directory]"
-    echo ""
-    echo "Options:"
-    echo "  -h, --help             Show this help message"
-    echo "  -n, --no-dry-run       Actually perform the replacements (default is dry run)"
-    echo ""
-    echo "Arguments:"
-    echo "  <search_pattern>       Regular expression pattern to search for"
-    echo "  <replacement>          String to replace matches with"
-    echo "  [directory]            Target directory (default: current directory)"
-    echo ""
-    echo "Examples:"
-    echo "  $0 'foo' 'bar'                  # Dry run replacing 'foo' with 'bar' in current dir"
-    echo "  $0 -n 'foo' 'bar' /path/to/dir  # Replace 'foo' with 'bar' in specified dir"
-}
-
-# Parse command line arguments
-no_dry_run=false
-search_pattern=""
-replacement=""
-target_dir="."
-
-while [[ $# -gt 0 ]]; do
-    case "$1" in
-        -h|--help)
-            show_usage
-            exit 0
-            ;;
-        -n|--no-dry-run)
-            no_dry_run=true
-            shift
-            ;;
-        -*)
-            echo "Error: Unknown option: $1"
-            show_usage
-            exit 1
-            ;;
-        *)
-            # Positional arguments
-            if [ -z "$search_pattern" ]; then
-                search_pattern="$1"
-            elif [ -z "$replacement" ]; then
-                replacement="$1"
-            elif [ "$target_dir" = "." ]; then
-                target_dir="$1"
-            else
-                echo "Error: Too many arguments"
-                show_usage
-                exit 1
-            fi
-            shift
-            ;;
-    esac
-done
-
-# Check if required arguments are provided
-if [ -z "$search_pattern" ] || [ -z "$replacement" ]; then
-    echo "Error: Missing required arguments"
-    show_usage
-    exit 1
-fi
-
-# Set dry run mode (dry run is default)
-dry_run=true
-if $no_dry_run; then
-    dry_run=false
-    echo "LIVE MODE: Changes will be applied"
-else
-    echo "DRY RUN MODE: No changes will be made (use -n to apply changes)"
-fi
-
-# Function to replace content in files
-replace_in_files() {
-    echo "Replacing content in files..."
-    find "$target_dir" -type f -not -path "*/\.*" -exec grep -l "$search_pattern" {} \; | while read file_path; do
-        echo "Processing file: $file_path"
-        if $dry_run; then
-            # Show what would be replaced
-            grep --color=always -n "$search_pattern" "$file_path" | head -5
-            match_count=$(grep -c "$search_pattern" "$file_path")
-            if [ $match_count -gt 5 ]; then
-                echo "... ($match_count matches found, showing first 5)"
-            fi
-        else
-            # Actually do the replacement
-            sed -i "s/$search_pattern/$replacement/g" "$file_path"
-        fi
-    done
-}
-
-# Function to rename files and directories
-rename_files_and_dirs() {
-    echo "Renaming files and directories..."
-
-    # Process files/dirs from deepest to root level to avoid path issues
-    find "$target_dir" -depth -not -path "*/\.*" | while read item_path; do
-        # Get the directory and filename parts
-        dir_part=$(dirname "$item_path")
-        base_part=$(basename "$item_path")
-
-        # Check if the file/dir name matches the pattern
-        if [[ "$base_part" =~ $search_pattern ]]; then
-            # Create the new name
-            new_name=$(echo "$base_part" | sed "s/$search_pattern/$replacement/g")
-            new_path="$dir_part/$new_name"
-
-            # Rename or show what would be renamed
-            if [ "$base_part" != "$new_name" ]; then
-                echo "Renaming: $item_path → $new_path"
-                if ! $dry_run; then
-                    mv "$item_path" "$new_path"
-                fi
-            fi
-        fi
-    done
-}
-
-# Execute the functions
-replace_in_files
-rename_files_and_dirs
-
-if $dry_run; then
-    echo "Dry run completed. No actual changes were made."
-else
-    echo "Replacement completed successfully."
-fi
-
-# EOF

scitex/scholar/docs/to_claude/bin/general/render_mermaid.sh

@@ -1,116 +0,0 @@
-#!/bin/bash
-# -*- coding: utf-8 -*-
-# Timestamp: "2025-05-11 13:32:44 (ywatanabe)"
-# File: ./.claude/scripts/render_mermaid.sh
-
-THIS_DIR="$(cd $(dirname ${BASH_SOURCE[0]}) && pwd)"
-LOG_PATH="$THIS_DIR/.$(basename $0).log"
-echo > "$LOG_PATH"
-
-GREEN='\033[0;32m'
-YELLOW='\033[0;33m'
-RED='\033[0;31m'
-NC='\033[0m' # No Color
-# ---------------------------------------
-
-LOG_FILE="$0.log"
-
-mmd2images() {
-    local path_mmd=$1
-    local base_name=${path_mmd%.mmd}
-    local path_svg="${base_name}.svg"
-    local path_png="${base_name}.png"
-    local path_gif="${base_name}.gif"
-
-    # Step 1: Ensure mermaid file is in TD (top-down) format
-    echo "Checking if Mermaid file is in TD format..."
-    if ! grep -q "^graph TD" "$path_mmd"; then
-        echo "Warning: Mermaid file is not using TD (top-down) format."
-        echo "Converting to TD format..."
-        sed -i 's/^graph \(LR\|RL\|BT\)/graph TD/' "$path_mmd"
-    fi
-
-    # Step 2: Convert MMD to SVG (high resolution)
-    echo "Converting ${path_mmd} to SVG..."
-    mmdc -i "$path_mmd" -o "$path_svg" --backgroundColor white
-
-    # Step 3: Convert SVG to high-res PNG with reasonable size
-    echo "Converting ${path_svg} to high-res PNG..."
-    convert "$path_svg" -quality 100 -background white -flatten "$path_png"
-
-    # Step 4: Convert PNG to GIF
-    echo "Converting ${path_png} to GIF..."
-    convert "$path_png" "$path_gif"
-
-    # Output success message
-    echo "Created: $path_svg"
-    echo "Created: $path_png"
-    echo "Created: $path_gif"
-
-    # Return the paths to the created files
-    echo "$path_svg $path_png $path_gif"
-}
-
-usage() {
-    echo "Usage: $0 [-h|--help]"
-    echo
-    echo "Options:"
-    echo " -h, --help   Display this help message"
-    echo
-    echo "Example:"
-    echo " $0"
-    echo
-    echo "Purpose:"
-    echo " Converts progress.mmd file to SVG, PNG and GIF formats"
-    echo " and ensures all diagrams are in TD (top-down) format"
-    exit 1
-}
-
-main() {
-    while [[ $# -gt 0 ]]; do
-        case $1 in
-        -h|--help) usage ;;
-          -) echo "Unknown option: $1"; usage ;;
-        esac
-    done
-
-    # Get the directory where this script is located
-    local script_dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-
-    # Set the path to the Mermaid file
-    local mermaid_file="${script_dir}/progress.mmd"
-
-    # Check if the Mermaid file exists
-    if [[ ! -f "$mermaid_file" ]]; then
-        echo "Error: Mermaid file not found: $mermaid_file"
-        exit 1
-    fi
-
-    # Check if mmdc command is available
-    if ! command -v mmdc &> /dev/null; then
-        echo "Error: mmdc command not found. Please install @mermaid-js/mermaid-cli:"
-        echo "npm install -g @mermaid-js/mermaid-cli"
-        exit 1
-    fi
-
-    # Check if convert command is available
-    if ! command -v convert &> /dev/null; then
-        echo "Error: convert command not found. Please install ImageMagick:"
-        echo "sudo apt-get install imagemagick # Ubuntu/Debian"
-        echo "brew install imagemagick # macOS with Homebrew"
-        exit 1
-    fi
-
-    # Generate the images
-    echo "Generating images from Mermaid diagram..."
-    mmd2images "$mermaid_file"
-
-    echo "Successfully generated SVG, PNG and GIF from Mermaid diagram."
-    echo "SVG: ${mermaid_file%.mmd}.svg"
-    echo "PNG: ${mermaid_file%.mmd}.png"
-    echo "GIF: ${mermaid_file%.mmd}.gif"
-}
-
-{ main "$@"; } 2>&1 | tee "$LOG_FILE"
-
-# EOF

scitex/scholar/docs/to_claude/bin/general/safe_rm.sh

@@ -1,75 +0,0 @@
-#!/bin/bash
-# -*- coding: utf-8 -*-
-# Timestamp: "2025-05-21 00:42:09 (ywatanabe)"
-# File: ./.claude/to_claude/bin/safe_rm.sh
-
-THIS_DIR="$(cd $(dirname ${BASH_SOURCE[0]}) && pwd)"
-LOG_PATH="$THIS_DIR/.$(basename $0).log"
-echo > "$LOG_PATH"
-
-BLACK='\033[0;30m'
-LIGHT_GRAY='\033[0;37m'
-GREEN='\033[0;32m'
-YELLOW='\033[0;33m'
-RED='\033[0;31m'
-NC='\033[0m' # No Color
-
-echo_info() { echo -e "${LIGHT_GRAY}$1${NC}"; }
-echo_success() { echo -e "${GREEN}$1${NC}"; }
-echo_warning() { echo -e "${YELLOW}$1${NC}"; }
-echo_error() { echo -e "${RED}$1${NC}"; }
-# ---------------------------------------
-
-usage() {
-    echo_info "Usage: $(basename $0) [-h|--help] file_or_directory [file_or_directory...]"
-    echo_info "Options:"
-    echo_info "  -h, --help    Display this help message"
-    echo_info ""
-    echo_info "Example:"
-    echo_info "  $(basename $0) file1.txt dir1"
-    echo_info "  $(basename $0) *.txt"
-    exit 1
-}
-
-safe_rm() {
-    # Creates timestamped backup of specified files/directories
-    # Example: safe_rm file1.txt dir1
-    local paths=("$@")
-    local timestamp=$(date +"%Y%m%d_%H%M%S")
-    for path in "${paths[@]}"; do
-        if [ -e "$path" ]; then
-            local dir=$(dirname "$path")
-            local tgt_dir="$dir/.old"
-            local filename=$(basename "$path")
-            local ext="${filename##*.}"
-            local name="${filename%.*}"
-
-            # Handle files without extension
-            if [ "$ext" = "$filename" ]; then
-                ext=""
-                name="$filename"
-            fi
-
-            mkdir -p "$tgt_dir" > /dev/null 2>&1
-
-            if [ -z "$ext" ]; then
-                mv -f "$path" "${tgt_dir}/${name}-${timestamp}"
-                echo_success "Moved $path to ${tgt_dir}/${name}-${timestamp}"
-            else
-                mv -f "$path" "${tgt_dir}/${name}-${timestamp}.${ext}"
-                echo_success "Moved $path to ${tgt_dir}/${name}-${timestamp}.${ext}"
-            fi
-        else
-            echo_error "Error: $path does not exist"
-        fi
-    done
-}
-
-# Parse arguments
-if [ $# -eq 0 ] || [ "$1" = "-h" ] || [ "$1" = "--help" ]; then
-    usage
-fi
-
-safe_rm "$@" 2>&1 | tee -a "$LOG_PATH"
-
-# EOF

scitex/scholar/docs/to_claude/bin/general/view_repo.sh

@@ -1,4 +0,0 @@
-#!/bin/bash
-# Minimal repository view script for test compatibility
-echo "Repository view script called with: $@"
-exit 0