scitex 2.13.0__py3-none-any.whl → 2.15.1__py3-none-any.whl

scitex/scholar/.legacy/metadata/urls/zotero_translators/NCBI Nucleotide.js

@@ -1,227 +0,0 @@
-{
-	"translatorID": "5e385e77-2f51-41b4-a29b-908e23d5d3e8",
-	"label": "NCBI Nucleotide",
-	"creator": "Martin Fenner",
-	"target": "^https?://(www\\.)?ncbi\\.nlm\\.nih\\.gov/nuccore/",
-	"minVersion": "3.0",
-	"maxVersion": "",
-	"priority": 100,
-	"inRepository": true,
-	"translatorType": 4,
-	"browserSupport": "gcs",
-	"lastUpdated": "2021-06-07 11:25:19"
-}
-
-/**
-	Copyright (c) 2014 Martin Fenner
-
-	This program is free software: you can redistribute it and/or
-	modify it under the terms of the GNU Affero General Public License
-	as published by the Free Software Foundation, either version 3 of
-	the License, or (at your option) any later version.
-
-	This program is distributed in the hope that it will be useful,
-	but WITHOUT ANY WARRANTY; without even the implied warranty of
-	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-	Affero General Public License for more details.
-
-	You should have received a copy of the GNU Affero General Public
-	License along with this program. If not, see
-	<http://www.gnu.org/licenses/>.
-*/
-
-function detectWeb(doc, url) {
-	// use item type journalArticle until item type dataset is supported in Zotero
-	if (getIds(doc)) return "journalArticle";
-
-	// search results
-	if (url.indexOf("/?term=") != -1 && getSearchResults(doc, true)) return "multiple";
-}
-
-function doWeb(doc, url) {
-	if (detectWeb(doc, url) == "multiple") {
-		getSelectedJSON(doc);
-	} else {
-		var ids = getIds(doc);
-		getJSON(ids);
-	}
-}
-
-function getSearchResults(doc, checkOnly) {
-	var results = doc.getElementsByClassName('rslt');
-	if (!results.length) return false;
-
-	var items = {};
-	var found = false;
-	for (var i = 0; i < results.length; i++) {
-		var title = results[i].firstChild.textContent;
-
-		// parse the id (a number) from the second link
-		var links = results[i].getElementsByTagName("a");
-		var id = links[1].href.match(/[\d]+/);
-		if (id && title) {
-			if (checkOnly) return true;
-			
-			found = true;
-			items["_" + id[0]] = ZU.trimInternal(title);
-		}
-	}
-	return found ? items : false;
-}
-
-function getSelectedJSON(doc) {
-	var items = getSearchResults(doc);
-	var ids = [];
-
-	Zotero.selectItems(items, function(selectedItems) {
-		if (!selectedItems) return true;
-
-		for (var i in selectedItems) {
-			ids.push(i.substr(1));
-		}
-		getJSON(ids);
-	});
-}
-
-function getIds(doc) {
-	var ids = ZU.xpathText(doc, '/html/head/meta[@name="ncbi_uidlist"]/@content')
-
-	if (!ids) return false;
-
-	return ids.split(",");
-}
-
-function getJSON(ids) {
-	var baseURL = "//eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=nucleotide&retmode=json&id=";
-	var jsonURL = baseURL + encodeURIComponent(ids.join(","));
-	Z.debug(jsonURL);
-	ZU.doGet(jsonURL, parseJSON);
-}
-
-function parseJSON(text) {
-	try {
-		var obj = JSON.parse(text).result;
-		var uids = obj.uids;
-	} catch (e) {
-		Z.debug(text.substr(0, 100));
-		throw e;
-	}
-
-	for (var i = 0; i < uids.length; i++) {
-		var uid = uids[i];
-		var data = obj[uid];
-		var item = new Z.Item("journalArticle");
-
-		item.title = data.title;
-		item.callNumber = data.accessionversion;
-
-		item.archive = "NCBI Nucleotide Database";
-		item.archiveLocation = uid;
-
-		// indicate that this is in fact a dataset
-		item.extra = "Type: dataset";
-
-		var version = data.accessionversion.match(/\.(\d{1,2})$/);
-		if (version && version[1] != '1') {
-			item.extra += "\nVersion: " + version[1];
-		}
-
-		item.url = "http://www.ncbi.nlm.nih.gov/nuccore/" + encodeURIComponent(data.accessionversion);
-		item.date = data.updatedate;
-		
-		if (data.organism) item.tags.push(data.organism);
-		if (data.moltype) item.tags.push(data.moltype);
-		if (data.sourcedb) item.tags.push(data.sourcedb);
-		
-		item.attachments.push({
-			url: "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&retmode=gb&rettype=text&id=" + encodeURIComponent(uid),
-			title: "Nucleotide sequence (gb)",
-			mimeType: "chemical/x-genbank",
-			snapshot: false
-		});
-
-		// http://www.ncbi.nlm.nih.gov/About/disclaimer.html
-		item.rights = "Public domain";
-
-		item.language = "en-US";
-		
-		item.complete();
-	}
-}
-
-/** BEGIN TEST CASES **/
-var testCases = [
-	{
-		"type": "web",
-		"url": "http://www.ncbi.nlm.nih.gov/nuccore/?term=brca1",
-		"items": "multiple"
-	},
-	{
-		"type": "web",
-		"url": "http://www.ncbi.nlm.nih.gov/nuccore/I01425.1",
-		"items": [
-			{
-				"itemType": "journalArticle",
-				"title": "Sequence 1 from Patent US 4849348",
-				"creators": [],
-				"date": "1993/03/05",
-				"archive": "NCBI Nucleotide Database",
-				"archiveLocation": "270186",
-				"callNumber": "I01425.1",
-				"extra": "Type: dataset",
-				"language": "en-US",
-				"libraryCatalog": "NCBI Nucleotide",
-				"rights": "Public domain",
-				"url": "http://www.ncbi.nlm.nih.gov/nuccore/I01425.1",
-				"attachments": [
-					{
-						"title": "Nucleotide sequence (gb)",
-						"mimeType": "chemical/x-genbank",
-						"snapshot": false
-					}
-				],
-				"tags": [
-					"dna",
-					"insd"
-				],
-				"notes": [],
-				"seeAlso": []
-			}
-		]
-	},
-	{
-		"type": "web",
-		"url": "https://www.ncbi.nlm.nih.gov/nuccore/NM_078524.4",
-		"items": [
-			{
-				"itemType": "journalArticle",
-				"title": "Drosophila melanogaster smad on X, transcript variant A (Smox), mRNA",
-				"creators": [],
-				"date": "2016/12/13",
-				"archive": "NCBI Nucleotide Database",
-				"archiveLocation": "665390239",
-				"callNumber": "NM_078524.4",
-				"extra": "Type: dataset\nVersion: 4",
-				"language": "en-US",
-				"libraryCatalog": "NCBI Nucleotide",
-				"rights": "Public domain",
-				"url": "http://www.ncbi.nlm.nih.gov/nuccore/NM_078524.4",
-				"attachments": [
-					{
-						"title": "Nucleotide sequence (gb)",
-						"mimeType": "chemical/x-genbank",
-						"snapshot": false
-					}
-				],
-				"tags": [
-					"fruit fly",
-					"refseq",
-					"rna"
-				],
-				"notes": [],
-				"seeAlso": []
-			}
-		]
-	}
-]
-/** END TEST CASES **/

scitex/scholar/.legacy/metadata/urls/zotero_translators/NPR.js

@@ -1,341 +0,0 @@
-{
-	"translatorID": "bc2fbf38-3061-4335-8644-69ce68580b20",
-	"label": "NPR",
-	"creator": "Abe Jellinek",
-	"target": "^https?://www\\.npr\\.org/",
-	"minVersion": "3.0",
-	"maxVersion": "",
-	"priority": 100,
-	"inRepository": true,
-	"translatorType": 4,
-	"browserSupport": "gcsibv",
-	"lastUpdated": "2021-08-13 21:08:15"
-}
-
-/*
-	***** BEGIN LICENSE BLOCK *****
-
-	Copyright © 2021 Abe Jellinek
-	
-	This file is part of Zotero.
-
-	Zotero is free software: you can redistribute it and/or modify
-	it under the terms of the GNU Affero General Public License as published by
-	the Free Software Foundation, either version 3 of the License, or
-	(at your option) any later version.
-
-	Zotero is distributed in the hope that it will be useful,
-	but WITHOUT ANY WARRANTY; without even the implied warranty of
-	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-	GNU Affero General Public License for more details.
-
-	You should have received a copy of the GNU Affero General Public License
-	along with Zotero. If not, see <http://www.gnu.org/licenses/>.
-
-	***** END LICENSE BLOCK *****
-*/
-
-
-function detectWeb(doc, url) {
-	// NPR assumes that only a crawler (which always loads pages fresh rather
-	// than letting the SPA framework fake a reload) would want JSON-LD, so we
-	// can't use that as our only check, and we'll have to manually reload the
-	// page to get it in doWeb.
-	// The JSON-LD also sticks around when you navigate to a non-story page,
-	// which is odd, so we can't use it as a test for a story page at all!
-	if (doc.querySelector('#storytext')) {
-		if (doc.querySelector('h1.transcript a')) {
-			if (attr(doc, '.slug a', 'href').includes('npr.org/podcasts/')) {
-				return "podcast";
-			}
-			else {
-				return "radioBroadcast";
-			}
-		}
-		else if (doc.querySelector('#primaryaudio')) {
-			return "multiple";
-		}
-		else {
-			return "newspaperArticle";
-		}
-	}
-	else if (/^https?:\/\/www\.npr\.org\/.+/.test(url)) {
-		// wait for SPA reload
-		Z.monitorDOMChanges(doc.querySelector('#loading-bar'));
-	}
-	// we can't really do search results, because each result might be a
-	// multiple and there's no way to tell from the search page
-	return false;
-}
-
-
-function doWeb(doc, url) {
-	if (doc.querySelector('script[type="application/ld+json"]')) {
-		scrape(doc, url);
-	}
-	else {
-		// See comment in detectWeb. Have to add a # to ensure that
-		// processDocuments doesn't use the already-loaded page.
-		ZU.processDocuments(url + '#', scrape);
-	}
-}
-
-function scrape(doc, url) {
-	let detected = detectWeb(doc, url);
-	switch (detected) {
-		case 'multiple': {
-			// we're detecting "multiple" because we have audio and text,
-			// so we can just hardcode the options here
-			let options = { text: 'Text', audio: 'Audio' };
-			Zotero.selectItems(options, function (items) {
-				if (items.text) {
-					scrapeText(doc, url);
-				}
-				if (items.audio) {
-					scrapeAudio(doc, url);
-				}
-			});
-			break; }
-		case 'newspaperArticle':
-			scrapeText(doc, url);
-			break;
-		case 'radioBroadcast':
-		case 'podcast':
-			scrapeAudio(doc, url);
-			break;
-	}
-}
-
-function scrapeText(doc, _url) {
-	let item = new Zotero.Item('newspaperArticle');
-	let json = JSON.parse(text(doc, 'script[type="application/ld+json"]'));
-	
-	item.title = json.headline;
-	item.abstractNote = ZU.cleanTags(json.description);
-	item.publicationTitle = 'NPR';
-	item.date = json.dateModified || json.datePublished;
-	item.section = text(doc, 'h3.slug');
-	item.language = 'en';
-	item.url = json.mainEntityOfPage['@id'];
-	
-	if (json.author) {
-		for (let name of json.author.name) {
-			item.creators.push(ZU.cleanAuthor(name, 'author'));
-		}
-	}
-	
-	item.attachments.push({
-		title: 'Snapshot',
-		document: doc
-	});
-	
-	item.complete();
-}
-
-function scrapeAudio(doc, _url) {
-	// first we need to figure out whether we're looking at a radio broadcast
-	// or a podcast
-	let itemType;
-	if (doc.querySelector('h1.transcript a')) {
-		// if we're on a transcript page, the slug link will include /podcasts/
-		// if the show in question is a podcast
-		if (attr(doc, '.slug a', 'href').includes('npr.org/podcasts/')) {
-			itemType = 'podcast';
-		}
-		else {
-			itemType = 'radioBroadcast';
-		}
-	}
-	else if (doc.querySelector('.program-block a')) {
-		// if we're on an article page, there'll be a .program-block link iff
-		// the show aired on a radio program
-		itemType = 'radioBroadcast';
-	}
-	else {
-		itemType = 'podcast';
-	}
-	
-	let item = new Zotero.Item(itemType);
-	let json = JSON.parse(text(doc, 'script[type="application/ld+json"]'));
-	
-	item.title = text(doc, '#primaryaudio .audio-module-title') || json.headline;
-	item.abstractNote = ZU.cleanTags(json.description);
-	
-	// strip the time from the date, since we have no way of knowing exactly
-	// what time it aired (and the time on the article is based on when the
-	// transcript was published)
-	let date = (json.dateModified || json.datePublished).replace(/T.+$/, '');
-	if (itemType == 'radioBroadcast') {
-		item.date = date;
-		item.programTitle = text(doc, '.program-block a');
-		if (!item.programTitle) {
-			// transcript pages don't have a .program-block, so we'll use a
-			// shakier approach based on internal audio player metadata
-			try {
-				item.programTitle = JSON.parse(
-					attr(doc, 'div[data-audio]', 'data-audio')
-				).program;
-			}
-			catch (_) {}
-		}
-		item.network = 'NPR';
-	}
-	else {
-		// podcasts have no date field
-		item.extra = `issued: ${date}\n`;
-		item.seriesTitle = text(doc, 'h3.slug');
-		item.publisher = 'NPR'; // no good analogue for this, so let it go into extra
-	}
-	
-	item.runningTime = attr(doc, '#primaryaudio .audio-module-duration', 'datetime')
-		.replace(/P(\d+)H,(\d+)M,(\d+)S/, '$1:$2:$3')
-		.replace(/P(\d+)M,(\d+)S/, '$1:$2');
-	item.language = 'en';
-	item.url = json.mainEntityOfPage['@id'];
-	
-	if (json.author) {
-		for (let name of json.author.name) {
-			let creatorType = itemType == 'radioBroadcast' ? 'director' : 'podcaster';
-			item.creators.push(ZU.cleanAuthor(name, creatorType));
-		}
-	}
-	
-	item.attachments.push({
-		title: 'Audio',
-		mimeType: 'audio/mpeg',
-		url: attr(doc, '#primaryaudio .audio-tool-download > a', 'href')
-	});
-	
-	item.attachments.push({
-		title: 'Transcript',
-		mimeType: 'text/html',
-		url: attr(doc, '#primaryaudio .audio-tool-transcript > a', 'href'),
-		snapshot: true
-	});
-	
-	item.complete();
-}
-
-/** BEGIN TEST CASES **/
-var testCases = [
-	{
-		"type": "web",
-		"url": "https://www.npr.org/2020/07/09/889562040/supreme-court-rules-that-about-half-of-oklahoma-is-indian-land",
-		"items": [
-			{
-				"itemType": "newspaperArticle",
-				"title": "Supreme Court Rules That About Half Of Oklahoma Is Native American Land",
-				"creators": [
-					{
-						"firstName": "Laurel",
-						"lastName": "Wamsley",
-						"creatorType": "author"
-					}
-				],
-				"date": "2020-07-09T19:17:00-04:00",
-				"abstractNote": "\"Today we are asked whether the land these treaties promised remains an Indian reservation. ... Because Congress has not said otherwise, we hold the government to its word,\" wrote Justice Gorsuch.",
-				"language": "en",
-				"libraryCatalog": "NPR",
-				"publicationTitle": "NPR",
-				"section": "Law",
-				"url": "https://www.npr.org/2020/07/09/889562040/supreme-court-rules-that-about-half-of-oklahoma-is-indian-land",
-				"attachments": [
-					{
-						"title": "Snapshot",
-						"mimeType": "text/html"
-					}
-				],
-				"tags": [],
-				"notes": [],
-				"seeAlso": []
-			}
-		]
-	},
-	{
-		"type": "web",
-		"url": "https://www.npr.org/2021/07/13/1011376403/its-summer-and-that-means-the-mysterious-return-of-glacier-ice-worms",
-		"items": "multiple"
-	},
-	{
-		"type": "web",
-		"url": "https://www.npr.org/transcripts/1011376403",
-		"items": [
-			{
-				"itemType": "radioBroadcast",
-				"title": "It's Summer, And That Means The Mysterious Return Of Glacier Ice Worms",
-				"creators": [
-					{
-						"firstName": "Nell",
-						"lastName": "Greenfieldboyce",
-						"creatorType": "director"
-					}
-				],
-				"date": "2021-07-13",
-				"abstractNote": "On mountaintop glaciers of Alaska, Washington and Oregon, billions of tiny black worms are tunneling upward to the barren, icy surface. What lures them, and how do they survive the frozen depths?",
-				"language": "en",
-				"libraryCatalog": "NPR",
-				"network": "NPR",
-				"programTitle": "Morning Edition",
-				"runningTime": "6:38",
-				"url": "https://www.npr.org/2021/07/13/1011376403/its-summer-and-that-means-the-mysterious-return-of-glacier-ice-worms",
-				"attachments": [
-					{
-						"title": "Audio",
-						"mimeType": "audio/mpeg"
-					},
-					{
-						"title": "Transcript",
-						"mimeType": "text/html",
-						"snapshot": true
-					}
-				],
-				"tags": [],
-				"notes": [],
-				"seeAlso": []
-			}
-		]
-	},
-	{
-		"type": "web",
-		"url": "https://www.npr.org/transcripts/1011289394",
-		"items": [
-			{
-				"itemType": "podcast",
-				"title": "Égalité, Fraternité, And 'Libertie'",
-				"creators": [
-					{
-						"firstName": "Gene",
-						"lastName": "Demby",
-						"creatorType": "podcaster"
-					},
-					{
-						"firstName": "Shereen Marisol",
-						"lastName": "Meraji",
-						"creatorType": "podcaster"
-					}
-				],
-				"abstractNote": "This month on Code Switch, we're talking about books — new and old — that have deepened our understandings of what it means to be free. First up, a conversation with author Kaitlyn Greenidge about her new novel, Libertie, which tells the story of a young woman pushing back against her mother's expectations of what her life should look like.",
-				"extra": "issued: 2021-07-07",
-				"language": "en",
-				"runningTime": "23:33",
-				"seriesTitle": "Code Switch",
-				"url": "https://www.npr.org/2021/06/29/1011289394/egalite-fraternite-and-libertie",
-				"attachments": [
-					{
-						"title": "Audio",
-						"mimeType": "audio/mpeg"
-					},
-					{
-						"title": "Transcript",
-						"mimeType": "text/html",
-						"snapshot": true
-					}
-				],
-				"tags": [],
-				"notes": [],
-				"seeAlso": []
-			}
-		]
-	}
-]
-/** END TEST CASES **/