PyPI - python-microscopy - Versions diffs - 25.6.5__cp39-cp39-win_amd64.whl - Mend

python-microscopy 25.6.5__cp39-cp39-win_amd64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1277) hide show

PYME/Acquire/ActionManager.py +450 -0
PYME/Acquire/ExecTools.py +235 -0
PYME/Acquire/Hardware/AAOptoelectronics/MDS.py +175 -0
PYME/Acquire/Hardware/AAOptoelectronics/__init__.py +0 -0
PYME/Acquire/Hardware/ARCoptix/__init__.py +0 -0
PYME/Acquire/Hardware/ARCoptix/lcdriver.py +149 -0
PYME/Acquire/Hardware/ARCoptix/lcserver32.py +123 -0
PYME/Acquire/Hardware/AndorIXon/AndorCam.py +1095 -0
PYME/Acquire/Hardware/AndorIXon/AndorControlFrame.py +312 -0
PYME/Acquire/Hardware/AndorIXon/AndorIXon.py +737 -0
PYME/Acquire/Hardware/AndorIXon/__init__.py +27 -0
PYME/Acquire/Hardware/AndorNeo/AndorNeo.py +644 -0
PYME/Acquire/Hardware/AndorNeo/AndorNeoControlFrame.py +161 -0
PYME/Acquire/Hardware/AndorNeo/AndorZyla.py +761 -0
PYME/Acquire/Hardware/AndorNeo/SDK3.py +307 -0
PYME/Acquire/Hardware/AndorNeo/SDK3Cam.py +171 -0
PYME/Acquire/Hardware/AndorNeo/ZylaControlPanel.py +105 -0
PYME/Acquire/Hardware/AndorNeo/__init__.py +22 -0
PYME/Acquire/Hardware/AndorNeo/parseAtdebug.py +46 -0
PYME/Acquire/Hardware/AndorNeo/plotTimings.py +73 -0
PYME/Acquire/Hardware/AndorNeo/testNeo.py +62 -0
PYME/Acquire/Hardware/Camera.py +1199 -0
PYME/Acquire/Hardware/CameraSkeleton.py +642 -0
PYME/Acquire/Hardware/Coherent/OBIS.py +147 -0
PYME/Acquire/Hardware/Coherent/Sapphire.py +162 -0
PYME/Acquire/Hardware/Coherent/__init__.py +0 -0
PYME/Acquire/Hardware/DMDGui.py +198 -0
PYME/Acquire/Hardware/DigiData/DigiData.py +95 -0
PYME/Acquire/Hardware/DigiData/DigiDataClient.py +30 -0
PYME/Acquire/Hardware/DigiData/RemoteDigiData.py +51 -0
PYME/Acquire/Hardware/DigiData/__init__.py +24 -0
PYME/Acquire/Hardware/DigiData/axDD132x.py +348 -0
PYME/Acquire/Hardware/EMCCDTheory.py +41 -0
PYME/Acquire/Hardware/ExciterWheel.py +167 -0
PYME/Acquire/Hardware/FilterWheel.py +184 -0
PYME/Acquire/Hardware/FocCorr.py +106 -0
PYME/Acquire/Hardware/FocCorrR.py +196 -0
PYME/Acquire/Hardware/FrFilter.py +51 -0
PYME/Acquire/Hardware/GCS/GCS_DLL.py +370 -0
PYME/Acquire/Hardware/GCS/__init__.py +0 -0
PYME/Acquire/Hardware/GCS/gcs.py +210 -0
PYME/Acquire/Hardware/HamamatsuDCAM/HamamatsuDCAM.py +662 -0
PYME/Acquire/Hardware/HamamatsuDCAM/HamamatsuORCA.py +602 -0
PYME/Acquire/Hardware/HamamatsuDCAM/Hamamatsu_control_panel.py +54 -0
PYME/Acquire/Hardware/HamamatsuDCAM/__init__.py +23 -0
PYME/Acquire/Hardware/LaserControlFrame.py +160 -0
PYME/Acquire/Hardware/MPBCommunications/MPBCW.py +132 -0
PYME/Acquire/Hardware/MPBCommunications/__init__.py +0 -0
PYME/Acquire/Hardware/Mercury/Mercury.py +269 -0
PYME/Acquire/Hardware/Mercury/PI_Mercury_GCS_DLL.py +857 -0
PYME/Acquire/Hardware/Mercury/__init__.py +22 -0
PYME/Acquire/Hardware/Mercury/mercuryStepper.py +203 -0
PYME/Acquire/Hardware/Mercury/mercuryStepperGCS.py +281 -0
PYME/Acquire/Hardware/NikonTE2000.py +68 -0
PYME/Acquire/Hardware/NikonTi.py +214 -0
PYME/Acquire/Hardware/NikonTiGUI.py +81 -0
PYME/Acquire/Hardware/OrielCornerstone.py +125 -0
PYME/Acquire/Hardware/PM100USB.py +51 -0
PYME/Acquire/Hardware/Piezos/__init__.py +22 -0
PYME/Acquire/Hardware/Piezos/base_piezo.py +108 -0
PYME/Acquire/Hardware/Piezos/offsetPiezo.py +162 -0
PYME/Acquire/Hardware/Piezos/offsetPiezoREST.py +308 -0
PYME/Acquire/Hardware/Piezos/piezo_c867.py +486 -0
PYME/Acquire/Hardware/Piezos/piezo_e255.py +68 -0
PYME/Acquire/Hardware/Piezos/piezo_e662.py +61 -0
PYME/Acquire/Hardware/Piezos/piezo_e709.py +434 -0
PYME/Acquire/Hardware/Piezos/piezo_e816.py +452 -0
PYME/Acquire/Hardware/Piezos/piezo_e816_corr.py +70 -0
PYME/Acquire/Hardware/Piezos/piezo_e816_dll.py +518 -0
PYME/Acquire/Hardware/Piezos/piezo_e816b.py +70 -0
PYME/Acquire/Hardware/Piezos/piezo_pipython_gcs.py +560 -0
PYME/Acquire/Hardware/Piezos/piezo_test.py +55 -0
PYME/Acquire/Hardware/Simulator/EmpiricalHist.py +273 -0
PYME/Acquire/Hardware/Simulator/__init__.py +22 -0
PYME/Acquire/Hardware/Simulator/dSimControl.py +961 -0
PYME/Acquire/Hardware/Simulator/fakeCam.py +651 -0
PYME/Acquire/Hardware/Simulator/fakePiezo.py +95 -0
PYME/Acquire/Hardware/Simulator/fluor.py +336 -0
PYME/Acquire/Hardware/Simulator/illuminate.cp39-win_amd64.dll.a +0 -0
PYME/Acquire/Hardware/Simulator/illuminate.cp39-win_amd64.pyd +0 -0
PYME/Acquire/Hardware/Simulator/illuminate.pyx +93 -0
PYME/Acquire/Hardware/Simulator/lasersliders.py +90 -0
PYME/Acquire/Hardware/Simulator/rend_im.py +446 -0
PYME/Acquire/Hardware/Simulator/setup.py +69 -0
PYME/Acquire/Hardware/Simulator/simcontrol.py +348 -0
PYME/Acquire/Hardware/Simulator/simui_wx.py +794 -0
PYME/Acquire/Hardware/Tango/__init__.py +0 -0
PYME/Acquire/Hardware/Tango/marzhauser_tango.py +583 -0
PYME/Acquire/Hardware/TiLightCrafter.py +388 -0
PYME/Acquire/Hardware/__init__.py +22 -0
PYME/Acquire/Hardware/aotf.py +271 -0
PYME/Acquire/Hardware/arclampshutterpanel.py +71 -0
PYME/Acquire/Hardware/cameraSoftwareBuffer.py +215 -0
PYME/Acquire/Hardware/camera_noise.py +270 -0
PYME/Acquire/Hardware/ccdAdjPanel.py +188 -0
PYME/Acquire/Hardware/ccdCalibrator.py +161 -0
PYME/Acquire/Hardware/cobaltLaser.py +108 -0
PYME/Acquire/Hardware/cobaltLaser561.py +94 -0
PYME/Acquire/Hardware/comports.py +26 -0
PYME/Acquire/Hardware/driftTrackGUI.py +488 -0
PYME/Acquire/Hardware/driftTracking.py +595 -0
PYME/Acquire/Hardware/fakeShutters.py +52 -0
PYME/Acquire/Hardware/focusKeys.py +204 -0
PYME/Acquire/Hardware/focus_locks/__init__.py +0 -0
PYME/Acquire/Hardware/focus_locks/reflection_focus_lock.py +684 -0
PYME/Acquire/Hardware/frZStage.py +117 -0
PYME/Acquire/Hardware/fw102.py +38 -0
PYME/Acquire/Hardware/ids_peak_cam.py +561 -0
PYME/Acquire/Hardware/ioslave.py +305 -0
PYME/Acquire/Hardware/lasers.py +292 -0
PYME/Acquire/Hardware/matchboxLaser.py +58 -0
PYME/Acquire/Hardware/microscope_adapter.py +104 -0
PYME/Acquire/Hardware/mpd_picosecond_delayer.py +395 -0
PYME/Acquire/Hardware/multiview.py +287 -0
PYME/Acquire/Hardware/olympusix81.py +59 -0
PYME/Acquire/Hardware/pco/__init__.py +0 -0
PYME/Acquire/Hardware/pco/pco_cam.py +348 -0
PYME/Acquire/Hardware/pco/pco_edge_42_lt.py +34 -0
PYME/Acquire/Hardware/pco/pco_sdk.py +1645 -0
PYME/Acquire/Hardware/pco/pco_sdk_cam.py +518 -0
PYME/Acquire/Hardware/pco/pco_sdk_cam_control_panel.py +54 -0
PYME/Acquire/Hardware/phoxxLaser.py +199 -0
PYME/Acquire/Hardware/phoxxLaserOLD.py +242 -0
PYME/Acquire/Hardware/priorLumen.py +102 -0
PYME/Acquire/Hardware/priorarclampshutter.py +52 -0
PYME/Acquire/Hardware/setup.py +50 -0
PYME/Acquire/Hardware/spacenav.py +148 -0
PYME/Acquire/Hardware/splitter.py +394 -0
PYME/Acquire/Hardware/thorlabsPiezo.py +98 -0
PYME/Acquire/Hardware/thorlabs_cam.py +136 -0
PYME/Acquire/Hardware/thorlabs_mff_flipper.py +400 -0
PYME/Acquire/Hardware/toptica_ibeam.py +51 -0
PYME/Acquire/Hardware/uc480/AndorControlFrame.py +308 -0
PYME/Acquire/Hardware/uc480/__init__.py +27 -0
PYME/Acquire/Hardware/uc480/uCam480.py +695 -0
PYME/Acquire/Hardware/uc480/uc480.py +189 -0
PYME/Acquire/Hardware/uc480/uc480Deprecated.py +87 -0
PYME/Acquire/Hardware/uc480/uc480_h.py +767 -0
PYME/Acquire/Hardware/uc480/uc480_h_gen.py +62 -0
PYME/Acquire/Hardware/uc480/ucCamControlFrame.py +83 -0
PYME/Acquire/Hardware/ueye.py +702 -0
PYME/Acquire/PYMEAcquire.py +186 -0
PYME/Acquire/Protocols/DMDMFM.py +74 -0
PYME/Acquire/Protocols/__init__.py +22 -0
PYME/Acquire/Protocols/darkCalibrate.py +56 -0
PYME/Acquire/Protocols/dual671_470.py +45 -0
PYME/Acquire/Protocols/dual671_488.py +46 -0
PYME/Acquire/Protocols/gainCal.py +53 -0
PYME/Acquire/Protocols/htsms-cal-psf.py +32 -0
PYME/Acquire/Protocols/htsms-cal-registration.py +52 -0
PYME/Acquire/Protocols/htsms-flow.py +29 -0
PYME/Acquire/Protocols/htsms-staggered.py +31 -0
PYME/Acquire/Protocols/htsms-tile.py +68 -0
PYME/Acquire/Protocols/htsms-two-color.py +29 -0
PYME/Acquire/Protocols/htsms-widefield.py +32 -0
PYME/Acquire/Protocols/paint671.py +61 -0
PYME/Acquire/Protocols/photoconversion.py +52 -0
PYME/Acquire/Protocols/photoconversion2.py +55 -0
PYME/Acquire/Protocols/prebleach488.py +70 -0
PYME/Acquire/Protocols/prebleach490.py +69 -0
PYME/Acquire/Protocols/prebleach561.py +72 -0
PYME/Acquire/Protocols/prebleach561NeomEos2.py +70 -0
PYME/Acquire/Protocols/prebleach561NeomEos2ND1.py +70 -0
PYME/Acquire/Protocols/prebleach642.py +70 -0
PYME/Acquire/Protocols/prebleach671.py +69 -0
PYME/Acquire/Protocols/prebleach671ND1.py +58 -0
PYME/Acquire/Protocols/prebleach671ND2.py +57 -0
PYME/Acquire/Protocols/prebleach671Neo.py +69 -0
PYME/Acquire/Protocols/recover671.py +62 -0
PYME/Acquire/Protocols/sequence642_488.py +85 -0
PYME/Acquire/Protocols/sequence642_561.py +87 -0
PYME/Acquire/Protocols/shiftfield.py +198 -0
PYME/Acquire/Protocols/simul488.py +59 -0
PYME/Acquire/Protocols/simul642.py +63 -0
PYME/Acquire/Protocols/simul642HTSMS.py +63 -0
PYME/Acquire/Protocols/simulPA.py +37 -0
PYME/Acquire/Protocols/simulSIM.py +76 -0
PYME/Acquire/Protocols/simulStep.py +62 -0
PYME/Acquire/Protocols/spdscan.py +178 -0
PYME/Acquire/Protocols/standard470.py +45 -0
PYME/Acquire/Protocols/standard488.py +47 -0
PYME/Acquire/Protocols/standard671.py +48 -0
PYME/Acquire/Protocols/standard671_no532.py +47 -0
PYME/Acquire/Protocols/standardArclamp.py +46 -0
PYME/Acquire/Protocols/strip_tile.py +204 -0
PYME/Acquire/Protocols/tile.py +204 -0
PYME/Acquire/Protocols/tile3D.py +192 -0
PYME/Acquire/Protocols/tile671.py +190 -0
PYME/Acquire/Protocols/tile_triggered.py +189 -0
PYME/Acquire/Scripts/init.py +232 -0
PYME/Acquire/Scripts/init_N1_Ti_Exeter_ZIx.py +374 -0
PYME/Acquire/Scripts/init_N2_Ti_Zyla_lasers.py +290 -0
PYME/Acquire/Scripts/init_Neo.py +266 -0
PYME/Acquire/Scripts/init_NeoSim.py +159 -0
PYME/Acquire/Scripts/init_TIRF.py +232 -0
PYME/Acquire/Scripts/init_TIRF_Neo.py +242 -0
PYME/Acquire/Scripts/init_TIRF_NeoO.py +241 -0
PYME/Acquire/Scripts/init_TIRF_onecam.py +233 -0
PYME/Acquire/Scripts/init_Ti.py +257 -0
PYME/Acquire/Scripts/init_UOA_n.py +256 -0
PYME/Acquire/Scripts/init_UOA_n2.py +246 -0
PYME/Acquire/Scripts/init_Y1.py +249 -0
PYME/Acquire/Scripts/init_Zyla.py +260 -0
PYME/Acquire/Scripts/init_drift_tracking.py +80 -0
PYME/Acquire/Scripts/init_emccd_basic.py +277 -0
PYME/Acquire/Scripts/init_htsms.py +277 -0
PYME/Acquire/Scripts/init_htsms_focus_lock.py +132 -0
PYME/Acquire/Scripts/init_micrpi.py +45 -0
PYME/Acquire/Scripts/init_orca.py +70 -0
PYME/Acquire/Scripts/init_pco.py +49 -0
PYME/Acquire/Scripts/init_rev.py +74 -0
PYME/Acquire/Scripts/init_sim100.py +169 -0
PYME/Acquire/Scripts/init_sim103.py +169 -0
PYME/Acquire/Scripts/init_sim2.py +211 -0
PYME/Acquire/Scripts/init_sim50.py +169 -0
PYME/Acquire/Scripts/init_sim75.py +169 -0
PYME/Acquire/Scripts/init_sim_drift_tracking.py +166 -0
PYME/Acquire/Scripts/init_sim_htsms.py +224 -0
PYME/Acquire/Scripts/init_sim_htsms_n.py +233 -0
PYME/Acquire/Scripts/init_sim_main.py +229 -0
PYME/Acquire/Scripts/init_sim_min.py +197 -0
PYME/Acquire/Scripts/init_sim_rem.py +176 -0
PYME/Acquire/Scripts/init_smi1.py +110 -0
PYME/Acquire/Scripts/init_spectro.py +78 -0
PYME/Acquire/Scripts/init_spim.py +116 -0
PYME/Acquire/Scripts/init_thorcam.py +62 -0
PYME/Acquire/Scripts/init_twophoton.py +112 -0
PYME/Acquire/Scripts/init_uc480.py +262 -0
PYME/Acquire/Scripts/init_ueye.py +261 -0
PYME/Acquire/SpoolController.py +958 -0
PYME/Acquire/Utils/MultiPointScanner.py +80 -0
PYME/Acquire/Utils/__init__.py +13 -0
PYME/Acquire/Utils/failsafe.py +157 -0
PYME/Acquire/Utils/fastTiler.py +153 -0
PYME/Acquire/Utils/pointScanner.py +496 -0
PYME/Acquire/Utils/sarcSpacing.py +86 -0
PYME/Acquire/Utils/strip_tiler.py +93 -0
PYME/Acquire/Utils/tiler.py +464 -0
PYME/Acquire/Utils/vibrationAnalysis.py +65 -0
PYME/Acquire/__init__.py +44 -0
PYME/Acquire/acquire_client.py +90 -0
PYME/Acquire/acquire_server.py +316 -0
PYME/Acquire/acquirebase.py +139 -0
PYME/Acquire/acquiremainframe.py +716 -0
PYME/Acquire/acquirewx.py +61 -0
PYME/Acquire/acquisition_base.py +148 -0
PYME/Acquire/actions.py +209 -0
PYME/Acquire/autofocus.py +54 -0
PYME/Acquire/eventLog.py +95 -0
PYME/Acquire/event_loop.py +119 -0
PYME/Acquire/frameWrangler.py +530 -0
PYME/Acquire/htsms/__init__.py +8 -0
PYME/Acquire/htsms/rule_ui.py +970 -0
PYME/Acquire/htsms/rule_ui_v2.py +573 -0
PYME/Acquire/htsms/tweeter.py +222 -0
PYME/Acquire/microscope.py +1050 -0
PYME/Acquire/positionTracker.py +181 -0
PYME/Acquire/protocol.py +299 -0
PYME/Acquire/protocol_acquisition.py +404 -0
PYME/Acquire/sampleInformation.py +591 -0
PYME/Acquire/sampleInformationDjangoDirect.py +446 -0
PYME/Acquire/setup.py +52 -0
PYME/Acquire/stackSettings.py +295 -0
PYME/Acquire/stage_leveling.py +285 -0
PYME/Acquire/ui/AnalysisSettingsUI.py +184 -0
PYME/Acquire/ui/HDFSpoolFrame.py +584 -0
PYME/Acquire/ui/__init__.py +0 -0
PYME/Acquire/ui/actionUI.py +892 -0
PYME/Acquire/ui/focus_lock_gui.py +149 -0
PYME/Acquire/ui/intensity_trace.py +143 -0
PYME/Acquire/ui/intsliders.py +222 -0
PYME/Acquire/ui/lasersliders.py +329 -0
PYME/Acquire/ui/mpd_picosecond_delay_panel.py +69 -0
PYME/Acquire/ui/multiview_select.py +77 -0
PYME/Acquire/ui/positionUI.py +519 -0
PYME/Acquire/ui/preflight.py +58 -0
PYME/Acquire/ui/scanner_panel.py +41 -0
PYME/Acquire/ui/selectCameraPanel.py +46 -0
PYME/Acquire/ui/seqdialog.py +501 -0
PYME/Acquire/ui/splashScreen.py +175 -0
PYME/Acquire/ui/spool_panel.py +830 -0
PYME/Acquire/ui/tile_panel.py +556 -0
PYME/Acquire/ui/tilesettingsui.py +91 -0
PYME/Acquire/ui/voxelSizeDialog.py +149 -0
PYME/Acquire/webui/__init__.py +36 -0
PYME/Acquire/webui/ipy.py +361 -0
PYME/Acquire/webui/static/css/pyme-bootstrap.css +9908 -0
PYME/Acquire/webui/static/css/pymeacquire.css +85 -0
PYME/Acquire/webui/static/js/pymeacquire.js +375 -0
PYME/Acquire/webui/static/js/pzf.js +95 -0
PYME/Acquire/webui/templates/PYMEAcquire.html +232 -0
PYME/Acquire/webui/templates/login.html +84 -0
PYME/Acquire/webui/templates/xtermpage.html +106 -0
PYME/Acquire/xyztc.py +418 -0
PYME/Acquire/zScanner.py +287 -0
PYME/Analysis/BleachProfile/__init__.py +26 -0
PYME/Analysis/BleachProfile/deMod.py +91 -0
PYME/Analysis/BleachProfile/fitRecover.py +90 -0
PYME/Analysis/BleachProfile/intensProf.py +519 -0
PYME/Analysis/BleachProfile/kinModels.py +507 -0
PYME/Analysis/BleachProfile/rawIntensity.py +227 -0
PYME/Analysis/BleachProfile/rollins.py +555 -0
PYME/Analysis/Colocalisation/__init__.py +27 -0
PYME/Analysis/Colocalisation/colocScaleDep.py +126 -0
PYME/Analysis/Colocalisation/correlationCoeffs.py +198 -0
PYME/Analysis/Colocalisation/distColoc.py +110 -0
PYME/Analysis/Colocalisation/edtColoc.py +191 -0
PYME/Analysis/MetaData.py +278 -0
PYME/Analysis/PSFEst/__init__.py +27 -0
PYME/Analysis/PSFEst/dec.py +283 -0
PYME/Analysis/PSFEst/extractImages.py +316 -0
PYME/Analysis/PSFEst/fit_psf_zernikes.py +194 -0
PYME/Analysis/PSFEst/psfQuality.py +225 -0
PYME/Analysis/PSFGen/__init__.py +40 -0
PYME/Analysis/PSFGen/fourier.py +138 -0
PYME/Analysis/PSFGen/fourierHNA.py +1108 -0
PYME/Analysis/PSFGen/fourierHNA2.py +979 -0
PYME/Analysis/PSFGen/genCRBcurves.py +185 -0
PYME/Analysis/PSFGen/nijboer_zernike.py +79 -0
PYME/Analysis/PSFGen/ps_app.cp39-win_amd64.dll.a +0 -0
PYME/Analysis/PSFGen/ps_app.cp39-win_amd64.pyd +0 -0
PYME/Analysis/PSFGen/test_ps_app.py +24 -0
PYME/Analysis/Tracking/__init__.py +3 -0
PYME/Analysis/Tracking/msd.py +57 -0
PYME/Analysis/Tracking/trackUtils.py +528 -0
PYME/Analysis/Tracking/tracking.py +152 -0
PYME/Analysis/__init__.py +30 -0
PYME/Analysis/_fithelpers.py +161 -0
PYME/Analysis/angleFilter.py +287 -0
PYME/Analysis/annealThresh.py +157 -0
PYME/Analysis/autoencoder_classifier.py +45 -0
PYME/Analysis/binAvg.py +144 -0
PYME/Analysis/composite.py +183 -0
PYME/Analysis/cramerRao.py +259 -0
PYME/Analysis/deTile.py +441 -0
PYME/Analysis/density_filter.py +45 -0
PYME/Analysis/distributed_pyramid.py +426 -0
PYME/Analysis/fiducial_matching.py +220 -0
PYME/Analysis/gen_sCMOS_maps.py +355 -0
PYME/Analysis/graphing_filters.py +311 -0
PYME/Analysis/implicitFilter.py +359 -0
PYME/Analysis/keep_pairs.py +69 -0
PYME/Analysis/optic_flow.py +108 -0
PYME/Analysis/piecewise.py +36 -0
PYME/Analysis/piecewiseMapping.py +304 -0
PYME/Analysis/piezo_movement_correction.py +153 -0
PYME/Analysis/points/DeClump/__init__.py +78 -0
PYME/Analysis/points/DeClump/deClump.cp39-win_amd64.dll.a +0 -0
PYME/Analysis/points/DeClump/deClump.cp39-win_amd64.pyd +0 -0
PYME/Analysis/points/DeClump/deClumpGUI.py +87 -0
PYME/Analysis/points/DeClump/pyDeClump.py +284 -0
PYME/Analysis/points/DeClump/testClump.py +40 -0
PYME/Analysis/points/DistHist/__init__.py +25 -0
PYME/Analysis/points/DistHist/distHist.cp39-win_amd64.dll.a +0 -0
PYME/Analysis/points/DistHist/distHist.cp39-win_amd64.pyd +0 -0
PYME/Analysis/points/DistHist/distHistThreaded.py +71 -0
PYME/Analysis/points/DistHist/setup.py +54 -0
PYME/Analysis/points/EdgeDB/__init__.py +24 -0
PYME/Analysis/points/EdgeDB/edgeDB.cp39-win_amd64.dll.a +0 -0
PYME/Analysis/points/EdgeDB/edgeDB.cp39-win_amd64.pyd +0 -0
PYME/Analysis/points/EdgeDB/edgeTest.py +66 -0
PYME/Analysis/points/EdgeDB/edges.py +102 -0
PYME/Analysis/points/EdgeDB/segment.py +75 -0
PYME/Analysis/points/EdgeDB/setup.py +54 -0
PYME/Analysis/points/QuadTree/QTrend.py +232 -0
PYME/Analysis/points/QuadTree/__init__.py +25 -0
PYME/Analysis/points/QuadTree/pointQT.py +227 -0
PYME/Analysis/points/QuadTree/pointQTF.py +254 -0
PYME/Analysis/points/QuadTree/qtUtils.py +36 -0
PYME/Analysis/points/QuadTree/rendQT.py +118 -0
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Binary file

PYME/resources/web/rule_inline.html ADDED Viewed

@@ -0,0 +1,21 @@
+<table class="table table-striped">
+    <tr><th>Type</th><th>ID</th><th>Posted</th><th>Assigned</th><th>Completed</th><th>Failed</th><th>Timed out</th><th>Returned after timeout</th><th>Avg Cost</th><th></th></tr>
+    {% for ri in info %}
+        {% if ri.tasksPosted %}
+        <tr style="background-image: linear-gradient(to right, lightgreen, lightgreen {{ 100*ri.tasksCompleted/ri.tasksPosted }}%, indianred {{ 100*ri.tasksCompleted/ri.tasksPosted }}%, indianred {{ 100*(ri.tasksCompleted + ri.tasksFailed)/ri.tasksPosted }}%, lightgrey {{ 100*(ri.tasksCompleted + ri.tasksFailed)/ri.tasksPosted }}%,lightgrey);">
+        <td>RecipeRule</td>
+        <td>{{ ri['ID'] }}</td>
+        <td>{{ ri['tasksPosted'] }}</td>
+        <td>{{ ri['tasksRunning'] }}</td>
+        <td>{{ ri['tasksCompleted'] }}</td>
+        <td>{{ ri['tasksFailed'] }}{% if ri.errors %} - <a href={{ri.errors}}>Error log</a>{% endif %}</td>
+        <td>{{ ri['tasksTimedOut'] }}</td>
+        <td>{{ ri['tasksCompleteAfterTimeout'] }}</td>
+        <td>{{ ri['averageExecutionCost'] }}</td>
+        <!--<td><button>Abort</button></td>-->
+    </tr>
+    {% endif %}
+    {% endfor %}
+</table>

PYME/resources/web/ruleserver.html ADDED Viewed

@@ -0,0 +1,75 @@
+<!DOCTYPE html>
+<html lang="en">
+<head>
+    <meta charset="UTF-8">
+    <title>PYMERuleServer</title>
+    <link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.4.1/css/bootstrap.min.css"
+          integrity="sha384-Vkoo8x4CGsO3+Hhxv8T/Q5PaXtkKtu6ug5TOeNV6gBiFeWPGFN9MuhOf23Q9Ifjh" crossorigin="anonymous">
+    <style>
+        .inactive {
+            color: #adb5bd;
+        }
+    </style>
+</head>
+<body>
+<nav class="navbar navbar-expand-md navbar-dark bg-dark">
+  <a class="navbar-brand" href="#">PYMERuleServer</a>
+</nav>
+<div class="container mt-4">
+<div id="status">
+    <h3>Active analysis queues</h3>
+    <table class="table table-striped">
+        <tr><th>ID</th><th>Posted</th><th>Assigned</th><th>Completed</th><th>Failed</th><th>Timed out</th><th>Returned after timeout</th><th>Avg Cost</th><th></th></tr>
+        <tr v-for="(queueStats, queueName)  in queues" :class="queueStats.active ? 'active' : 'inactive'">
+            <td>{{ queueName }}</td><td>{{ queueStats.tasksPosted }}</td><td>{{ queueStats.tasksRunning }}</td><td>{{ queueStats.tasksCompleted }}</td>
+                <td>{{ queueStats.tasksFailed }}</td><td>{{ queueStats.tasksTimedOut }}</td><td>{{ queueStats.tasksCompleteAfterTimeout }}</td><td>{{ queueStats.averageExecutionCost }}</td><td>
+            <button v-if="queueStats.active" v-on:click="inactivate_rule(queueName );">Abort</button></td>
+        </tr>
+    </table>
+</div>
+</div>
+<script src="https://code.jquery.com/jquery-3.4.1.min.js"></script>
+<script src="https://cdn.jsdelivr.net/npm/vue/dist/vue.js"></script>
+<script>
+    var queues = {};
+    var app = new Vue({
+        el: '#status',
+        data: {
+            queues: queues
+            },
+        methods:{
+            inactivate_rule: function (ruleID) {
+                $.post('/inactivate_rule?ruleID=' + ruleID);
+            }
+        }
+    });
+    function poll_state(){
+        $.ajax({
+            url: "/queue_info_longpoll",
+            success: function(data){
+                //console.log(data);
+                app.queues=data.result;
+                //$("#int_time").val(1000*app.state['Camera.IntegrationTime'])
+            },
+            complete: function(jqXHR, status){
+                    if (status == 'success') {poll_state();} else {console.log('Error during image polling, make sure server is up and try refreshing the page');}
+                }
+        })
+    }
+    poll_state();
+</script>
+</body>
+</html>

PYME/resources/web/static/bootstrap.min.js ADDED Viewed

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+/*!
+ * Bootstrap v3.3.7 (http://getbootstrap.com)
+ * Copyright 2011-2016 Twitter, Inc.
+ * Licensed under the MIT license
+ */
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+this.activeTarget=b,this.clear();var c=this.selector+'[data-target="'+b+'"],'+this.selector+'[href="'+b+'"]',d=a(c).parents("li").addClass("active");d.parent(".dropdown-menu").length&&(d=d.closest("li.dropdown").addClass("active")),d.trigger("activate.bs.scrollspy")},b.prototype.clear=function(){a(this.selector).parentsUntil(this.options.target,".active").removeClass("active")};var d=a.fn.scrollspy;a.fn.scrollspy=c,a.fn.scrollspy.Constructor=b,a.fn.scrollspy.noConflict=function(){return a.fn.scrollspy=d,this},a(window).on("load.bs.scrollspy.data-api",function(){a('[data-spy="scroll"]').each(function(){var b=a(this);c.call(b,b.data())})})}(jQuery),+function(a){"use strict";function b(b){return this.each(function(){var d=a(this),e=d.data("bs.tab");e||d.data("bs.tab",e=new c(this)),"string"==typeof b&&e[b]()})}var c=function(b){this.element=a(b)};c.VERSION="3.3.7",c.TRANSITION_DURATION=150,c.prototype.show=function(){var b=this.element,c=b.closest("ul:not(.dropdown-menu)"),d=b.data("target");if(d||(d=b.attr("href"),d=d&&d.replace(/.*(?=#[^\s]*$)/,"")),!b.parent("li").hasClass("active")){var e=c.find(".active:last a"),f=a.Event("hide.bs.tab",{relatedTarget:b[0]}),g=a.Event("show.bs.tab",{relatedTarget:e[0]});if(e.trigger(f),b.trigger(g),!g.isDefaultPrevented()&&!f.isDefaultPrevented()){var h=a(d);this.activate(b.closest("li"),c),this.activate(h,h.parent(),function(){e.trigger({type:"hidden.bs.tab",relatedTarget:b[0]}),b.trigger({type:"shown.bs.tab",relatedTarget:e[0]})})}}},c.prototype.activate=function(b,d,e){function f(){g.removeClass("active").find("> .dropdown-menu > .active").removeClass("active").end().find('[data-toggle="tab"]').attr("aria-expanded",!1),b.addClass("active").find('[data-toggle="tab"]').attr("aria-expanded",!0),h?(b[0].offsetWidth,b.addClass("in")):b.removeClass("fade"),b.parent(".dropdown-menu").length&&b.closest("li.dropdown").addClass("active").end().find('[data-toggle="tab"]').attr("aria-expanded",!0),e&&e()}var g=d.find("> .active"),h=e&&a.support.transition&&(g.length&&g.hasClass("fade")||!!d.find("> .fade").length);g.length&&h?g.one("bsTransitionEnd",f).emulateTransitionEnd(c.TRANSITION_DURATION):f(),g.removeClass("in")};var d=a.fn.tab;a.fn.tab=b,a.fn.tab.Constructor=c,a.fn.tab.noConflict=function(){return a.fn.tab=d,this};var e=function(c){c.preventDefault(),b.call(a(this),"show")};a(document).on("click.bs.tab.data-api",'[data-toggle="tab"]',e).on("click.bs.tab.data-api",'[data-toggle="pill"]',e)}(jQuery),+function(a){"use strict";function b(b){return this.each(function(){var d=a(this),e=d.data("bs.affix"),f="object"==typeof b&&b;e||d.data("bs.affix",e=new c(this,f)),"string"==typeof b&&e[b]()})}var c=function(b,d){this.options=a.extend({},c.DEFAULTS,d),this.$target=a(this.options.target).on("scroll.bs.affix.data-api",a.proxy(this.checkPosition,this)).on("click.bs.affix.data-api",a.proxy(this.checkPositionWithEventLoop,this)),this.$element=a(b),this.affixed=null,this.unpin=null,this.pinnedOffset=null,this.checkPosition()};c.VERSION="3.3.7",c.RESET="affix affix-top affix-bottom",c.DEFAULTS={offset:0,target:window},c.prototype.getState=function(a,b,c,d){var e=this.$target.scrollTop(),f=this.$element.offset(),g=this.$target.height();if(null!=c&&"top"==this.affixed)return e<c&&"top";if("bottom"==this.affixed)return null!=c?!(e+this.unpin<=f.top)&&"bottom":!(e+g<=a-d)&&"bottom";var h=null==this.affixed,i=h?e:f.top,j=h?g:b;return null!=c&&e<=c?"top":null!=d&&i+j>=a-d&&"bottom"},c.prototype.getPinnedOffset=function(){if(this.pinnedOffset)return this.pinnedOffset;this.$element.removeClass(c.RESET).addClass("affix");var a=this.$target.scrollTop(),b=this.$element.offset();return this.pinnedOffset=b.top-a},c.prototype.checkPositionWithEventLoop=function(){setTimeout(a.proxy(this.checkPosition,this),1)},c.prototype.checkPosition=function(){if(this.$element.is(":visible")){var b=this.$element.height(),d=this.options.offset,e=d.top,f=d.bottom,g=Math.max(a(document).height(),a(document.body).height());"object"!=typeof d&&(f=e=d),"function"==typeof e&&(e=d.top(this.$element)),"function"==typeof f&&(f=d.bottom(this.$element));var h=this.getState(g,b,e,f);if(this.affixed!=h){null!=this.unpin&&this.$element.css("top","");var i="affix"+(h?"-"+h:""),j=a.Event(i+".bs.affix");if(this.$element.trigger(j),j.isDefaultPrevented())return;this.affixed=h,this.unpin="bottom"==h?this.getPinnedOffset():null,this.$element.removeClass(c.RESET).addClass(i).trigger(i.replace("affix","affixed")+".bs.affix")}"bottom"==h&&this.$element.offset({top:g-b-f})}};var d=a.fn.affix;a.fn.affix=b,a.fn.affix.Constructor=c,a.fn.affix.noConflict=function(){return a.fn.affix=d,this},a(window).on("load",function(){a('[data-spy="affix"]').each(function(){var c=a(this),d=c.data();d.offset=d.offset||{},null!=d.offsetBottom&&(d.offset.bottom=d.offsetBottom),null!=d.offsetTop&&(d.offset.top=d.offsetTop),b.call(c,d)})})}(jQuery);

PYME/resources/web/static/cluster.css ADDED Viewed

@@ -0,0 +1,137 @@
+.pie {
+   fill: #5cb85c;
+  stroke: #ddd;
+  stroke-width: 50;
+  stroke-dasharray: 0 158;
+}
+.chart{
+    background-color: #ddd;
+    min-height: 20px;
+    height: auto;
+    display: inline-block;
+    /*overflow: hidden;*/
+    width: 100%;
+}
+.chart-bar{
+    background-color: #5cb85c;
+    display: inline-block;
+    height: 100%;
+    float: right;
+    text-align: right;
+    /*padding-right: 5px;*/
+    /*overflow:hidden;*/
+}
+.chart-cpu{
+    background-color: #1c94c4;
+    min-height: 30px;
+    height: auto;
+    display: inline-block;
+    /*overflow: hidden;*/
+    width: 100%;
+    min-width: 100px;
+}
+.chart-gpu{
+    background-color: #c45c19;
+    min-height: 30px;
+    height: auto;
+    display: inline-block;
+    /*overflow: hidden;*/
+    width: 100%;
+    min-width: 100px;
+}
+.chart-cpu-bar{
+    /*background-color: #1c94c4;*/
+    background-color: #ddd;
+    display: inline-block;
+    /*height: 100%;*/
+    float: right;
+    text-align: right;
+    /*padding-right: 5px;*/
+    /*overflow:hidden;*/
+}
+.chart-bar-left{
+    display: inline-block;
+    max-width: 100%;
+    /*overflow:hidden;*/
+    /*min-width: 0;*/
+}
+.chart-bar-right{
+}
+.chart-label{
+    padding-left: 10px;
+    padding-right: 10px;
+    /*padding-top: 2px;
+    padding-bottom: 2px;*/
+    display: inline-block;
+}
+.section{
+    padding-bottom: 50px;
+}
+.cu-form-field{
+    display: inline-block;
+    margin-right: 10px;
+}
+.cu-form-field input[type=number]{
+    width: 50px;
+}
+.cu-selected{
+    background-color: #ccf8cc;
+}
+.cu-selected.file{
+    background-color: #ccccf8;
+}
+.table-striped>tbody>tr:nth-of-type(odd).cu-selected {
+    background-color: #ccf8cc;
+}
+.table-striped>tbody>tr:nth-of-type(odd).cu-selected.file {
+    background-color: #ccccf8;
+}
+.username {
+    font-weight: bold;
+    color: #FFFFFF;
+}
+.subnav {
+   list-style: none;
+}
+.subnav>li>a {
+    position: relative;
+    display: block;
+    padding: 2px;
+    padding-left: 10px;
+}
+/*
+circle {
+  -webkit-transition: stroke-dasharray .3s ease;
+  transition: stroke-dasharray .3s ease;
+}
+svg {
+  margin: 0 auto;
+  -webkit-transform: rotate(-90deg);
+          transform: rotate(-90deg);
+  background: #ddd;
+  border-radius: 50%;
+  display: block;
+}*/