python-microscopy 25.6.5__cp39-cp39-win_amd64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1277) hide show
  1. PYME/Acquire/ActionManager.py +450 -0
  2. PYME/Acquire/ExecTools.py +235 -0
  3. PYME/Acquire/Hardware/AAOptoelectronics/MDS.py +175 -0
  4. PYME/Acquire/Hardware/AAOptoelectronics/__init__.py +0 -0
  5. PYME/Acquire/Hardware/ARCoptix/__init__.py +0 -0
  6. PYME/Acquire/Hardware/ARCoptix/lcdriver.py +149 -0
  7. PYME/Acquire/Hardware/ARCoptix/lcserver32.py +123 -0
  8. PYME/Acquire/Hardware/AndorIXon/AndorCam.py +1095 -0
  9. PYME/Acquire/Hardware/AndorIXon/AndorControlFrame.py +312 -0
  10. PYME/Acquire/Hardware/AndorIXon/AndorIXon.py +737 -0
  11. PYME/Acquire/Hardware/AndorIXon/__init__.py +27 -0
  12. PYME/Acquire/Hardware/AndorNeo/AndorNeo.py +644 -0
  13. PYME/Acquire/Hardware/AndorNeo/AndorNeoControlFrame.py +161 -0
  14. PYME/Acquire/Hardware/AndorNeo/AndorZyla.py +761 -0
  15. PYME/Acquire/Hardware/AndorNeo/SDK3.py +307 -0
  16. PYME/Acquire/Hardware/AndorNeo/SDK3Cam.py +171 -0
  17. PYME/Acquire/Hardware/AndorNeo/ZylaControlPanel.py +105 -0
  18. PYME/Acquire/Hardware/AndorNeo/__init__.py +22 -0
  19. PYME/Acquire/Hardware/AndorNeo/parseAtdebug.py +46 -0
  20. PYME/Acquire/Hardware/AndorNeo/plotTimings.py +73 -0
  21. PYME/Acquire/Hardware/AndorNeo/testNeo.py +62 -0
  22. PYME/Acquire/Hardware/Camera.py +1199 -0
  23. PYME/Acquire/Hardware/CameraSkeleton.py +642 -0
  24. PYME/Acquire/Hardware/Coherent/OBIS.py +147 -0
  25. PYME/Acquire/Hardware/Coherent/Sapphire.py +162 -0
  26. PYME/Acquire/Hardware/Coherent/__init__.py +0 -0
  27. PYME/Acquire/Hardware/DMDGui.py +198 -0
  28. PYME/Acquire/Hardware/DigiData/DigiData.py +95 -0
  29. PYME/Acquire/Hardware/DigiData/DigiDataClient.py +30 -0
  30. PYME/Acquire/Hardware/DigiData/RemoteDigiData.py +51 -0
  31. PYME/Acquire/Hardware/DigiData/__init__.py +24 -0
  32. PYME/Acquire/Hardware/DigiData/axDD132x.py +348 -0
  33. PYME/Acquire/Hardware/EMCCDTheory.py +41 -0
  34. PYME/Acquire/Hardware/ExciterWheel.py +167 -0
  35. PYME/Acquire/Hardware/FilterWheel.py +184 -0
  36. PYME/Acquire/Hardware/FocCorr.py +106 -0
  37. PYME/Acquire/Hardware/FocCorrR.py +196 -0
  38. PYME/Acquire/Hardware/FrFilter.py +51 -0
  39. PYME/Acquire/Hardware/GCS/GCS_DLL.py +370 -0
  40. PYME/Acquire/Hardware/GCS/__init__.py +0 -0
  41. PYME/Acquire/Hardware/GCS/gcs.py +210 -0
  42. PYME/Acquire/Hardware/HamamatsuDCAM/HamamatsuDCAM.py +662 -0
  43. PYME/Acquire/Hardware/HamamatsuDCAM/HamamatsuORCA.py +602 -0
  44. PYME/Acquire/Hardware/HamamatsuDCAM/Hamamatsu_control_panel.py +54 -0
  45. PYME/Acquire/Hardware/HamamatsuDCAM/__init__.py +23 -0
  46. PYME/Acquire/Hardware/LaserControlFrame.py +160 -0
  47. PYME/Acquire/Hardware/MPBCommunications/MPBCW.py +132 -0
  48. PYME/Acquire/Hardware/MPBCommunications/__init__.py +0 -0
  49. PYME/Acquire/Hardware/Mercury/Mercury.py +269 -0
  50. PYME/Acquire/Hardware/Mercury/PI_Mercury_GCS_DLL.py +857 -0
  51. PYME/Acquire/Hardware/Mercury/__init__.py +22 -0
  52. PYME/Acquire/Hardware/Mercury/mercuryStepper.py +203 -0
  53. PYME/Acquire/Hardware/Mercury/mercuryStepperGCS.py +281 -0
  54. PYME/Acquire/Hardware/NikonTE2000.py +68 -0
  55. PYME/Acquire/Hardware/NikonTi.py +214 -0
  56. PYME/Acquire/Hardware/NikonTiGUI.py +81 -0
  57. PYME/Acquire/Hardware/OrielCornerstone.py +125 -0
  58. PYME/Acquire/Hardware/PM100USB.py +51 -0
  59. PYME/Acquire/Hardware/Piezos/__init__.py +22 -0
  60. PYME/Acquire/Hardware/Piezos/base_piezo.py +108 -0
  61. PYME/Acquire/Hardware/Piezos/offsetPiezo.py +162 -0
  62. PYME/Acquire/Hardware/Piezos/offsetPiezoREST.py +308 -0
  63. PYME/Acquire/Hardware/Piezos/piezo_c867.py +486 -0
  64. PYME/Acquire/Hardware/Piezos/piezo_e255.py +68 -0
  65. PYME/Acquire/Hardware/Piezos/piezo_e662.py +61 -0
  66. PYME/Acquire/Hardware/Piezos/piezo_e709.py +434 -0
  67. PYME/Acquire/Hardware/Piezos/piezo_e816.py +452 -0
  68. PYME/Acquire/Hardware/Piezos/piezo_e816_corr.py +70 -0
  69. PYME/Acquire/Hardware/Piezos/piezo_e816_dll.py +518 -0
  70. PYME/Acquire/Hardware/Piezos/piezo_e816b.py +70 -0
  71. PYME/Acquire/Hardware/Piezos/piezo_pipython_gcs.py +560 -0
  72. PYME/Acquire/Hardware/Piezos/piezo_test.py +55 -0
  73. PYME/Acquire/Hardware/Simulator/EmpiricalHist.py +273 -0
  74. PYME/Acquire/Hardware/Simulator/__init__.py +22 -0
  75. PYME/Acquire/Hardware/Simulator/dSimControl.py +961 -0
  76. PYME/Acquire/Hardware/Simulator/fakeCam.py +651 -0
  77. PYME/Acquire/Hardware/Simulator/fakePiezo.py +95 -0
  78. PYME/Acquire/Hardware/Simulator/fluor.py +336 -0
  79. PYME/Acquire/Hardware/Simulator/illuminate.cp39-win_amd64.dll.a +0 -0
  80. PYME/Acquire/Hardware/Simulator/illuminate.cp39-win_amd64.pyd +0 -0
  81. PYME/Acquire/Hardware/Simulator/illuminate.pyx +93 -0
  82. PYME/Acquire/Hardware/Simulator/lasersliders.py +90 -0
  83. PYME/Acquire/Hardware/Simulator/rend_im.py +446 -0
  84. PYME/Acquire/Hardware/Simulator/setup.py +69 -0
  85. PYME/Acquire/Hardware/Simulator/simcontrol.py +348 -0
  86. PYME/Acquire/Hardware/Simulator/simui_wx.py +794 -0
  87. PYME/Acquire/Hardware/Tango/__init__.py +0 -0
  88. PYME/Acquire/Hardware/Tango/marzhauser_tango.py +583 -0
  89. PYME/Acquire/Hardware/TiLightCrafter.py +388 -0
  90. PYME/Acquire/Hardware/__init__.py +22 -0
  91. PYME/Acquire/Hardware/aotf.py +271 -0
  92. PYME/Acquire/Hardware/arclampshutterpanel.py +71 -0
  93. PYME/Acquire/Hardware/cameraSoftwareBuffer.py +215 -0
  94. PYME/Acquire/Hardware/camera_noise.py +270 -0
  95. PYME/Acquire/Hardware/ccdAdjPanel.py +188 -0
  96. PYME/Acquire/Hardware/ccdCalibrator.py +161 -0
  97. PYME/Acquire/Hardware/cobaltLaser.py +108 -0
  98. PYME/Acquire/Hardware/cobaltLaser561.py +94 -0
  99. PYME/Acquire/Hardware/comports.py +26 -0
  100. PYME/Acquire/Hardware/driftTrackGUI.py +488 -0
  101. PYME/Acquire/Hardware/driftTracking.py +595 -0
  102. PYME/Acquire/Hardware/fakeShutters.py +52 -0
  103. PYME/Acquire/Hardware/focusKeys.py +204 -0
  104. PYME/Acquire/Hardware/focus_locks/__init__.py +0 -0
  105. PYME/Acquire/Hardware/focus_locks/reflection_focus_lock.py +684 -0
  106. PYME/Acquire/Hardware/frZStage.py +117 -0
  107. PYME/Acquire/Hardware/fw102.py +38 -0
  108. PYME/Acquire/Hardware/ids_peak_cam.py +561 -0
  109. PYME/Acquire/Hardware/ioslave.py +305 -0
  110. PYME/Acquire/Hardware/lasers.py +292 -0
  111. PYME/Acquire/Hardware/matchboxLaser.py +58 -0
  112. PYME/Acquire/Hardware/microscope_adapter.py +104 -0
  113. PYME/Acquire/Hardware/mpd_picosecond_delayer.py +395 -0
  114. PYME/Acquire/Hardware/multiview.py +287 -0
  115. PYME/Acquire/Hardware/olympusix81.py +59 -0
  116. PYME/Acquire/Hardware/pco/__init__.py +0 -0
  117. PYME/Acquire/Hardware/pco/pco_cam.py +348 -0
  118. PYME/Acquire/Hardware/pco/pco_edge_42_lt.py +34 -0
  119. PYME/Acquire/Hardware/pco/pco_sdk.py +1645 -0
  120. PYME/Acquire/Hardware/pco/pco_sdk_cam.py +518 -0
  121. PYME/Acquire/Hardware/pco/pco_sdk_cam_control_panel.py +54 -0
  122. PYME/Acquire/Hardware/phoxxLaser.py +199 -0
  123. PYME/Acquire/Hardware/phoxxLaserOLD.py +242 -0
  124. PYME/Acquire/Hardware/priorLumen.py +102 -0
  125. PYME/Acquire/Hardware/priorarclampshutter.py +52 -0
  126. PYME/Acquire/Hardware/setup.py +50 -0
  127. PYME/Acquire/Hardware/spacenav.py +148 -0
  128. PYME/Acquire/Hardware/splitter.py +394 -0
  129. PYME/Acquire/Hardware/thorlabsPiezo.py +98 -0
  130. PYME/Acquire/Hardware/thorlabs_cam.py +136 -0
  131. PYME/Acquire/Hardware/thorlabs_mff_flipper.py +400 -0
  132. PYME/Acquire/Hardware/toptica_ibeam.py +51 -0
  133. PYME/Acquire/Hardware/uc480/AndorControlFrame.py +308 -0
  134. PYME/Acquire/Hardware/uc480/__init__.py +27 -0
  135. PYME/Acquire/Hardware/uc480/uCam480.py +695 -0
  136. PYME/Acquire/Hardware/uc480/uc480.py +189 -0
  137. PYME/Acquire/Hardware/uc480/uc480Deprecated.py +87 -0
  138. PYME/Acquire/Hardware/uc480/uc480_h.py +767 -0
  139. PYME/Acquire/Hardware/uc480/uc480_h_gen.py +62 -0
  140. PYME/Acquire/Hardware/uc480/ucCamControlFrame.py +83 -0
  141. PYME/Acquire/Hardware/ueye.py +702 -0
  142. PYME/Acquire/PYMEAcquire.py +186 -0
  143. PYME/Acquire/Protocols/DMDMFM.py +74 -0
  144. PYME/Acquire/Protocols/__init__.py +22 -0
  145. PYME/Acquire/Protocols/darkCalibrate.py +56 -0
  146. PYME/Acquire/Protocols/dual671_470.py +45 -0
  147. PYME/Acquire/Protocols/dual671_488.py +46 -0
  148. PYME/Acquire/Protocols/gainCal.py +53 -0
  149. PYME/Acquire/Protocols/htsms-cal-psf.py +32 -0
  150. PYME/Acquire/Protocols/htsms-cal-registration.py +52 -0
  151. PYME/Acquire/Protocols/htsms-flow.py +29 -0
  152. PYME/Acquire/Protocols/htsms-staggered.py +31 -0
  153. PYME/Acquire/Protocols/htsms-tile.py +68 -0
  154. PYME/Acquire/Protocols/htsms-two-color.py +29 -0
  155. PYME/Acquire/Protocols/htsms-widefield.py +32 -0
  156. PYME/Acquire/Protocols/paint671.py +61 -0
  157. PYME/Acquire/Protocols/photoconversion.py +52 -0
  158. PYME/Acquire/Protocols/photoconversion2.py +55 -0
  159. PYME/Acquire/Protocols/prebleach488.py +70 -0
  160. PYME/Acquire/Protocols/prebleach490.py +69 -0
  161. PYME/Acquire/Protocols/prebleach561.py +72 -0
  162. PYME/Acquire/Protocols/prebleach561NeomEos2.py +70 -0
  163. PYME/Acquire/Protocols/prebleach561NeomEos2ND1.py +70 -0
  164. PYME/Acquire/Protocols/prebleach642.py +70 -0
  165. PYME/Acquire/Protocols/prebleach671.py +69 -0
  166. PYME/Acquire/Protocols/prebleach671ND1.py +58 -0
  167. PYME/Acquire/Protocols/prebleach671ND2.py +57 -0
  168. PYME/Acquire/Protocols/prebleach671Neo.py +69 -0
  169. PYME/Acquire/Protocols/recover671.py +62 -0
  170. PYME/Acquire/Protocols/sequence642_488.py +85 -0
  171. PYME/Acquire/Protocols/sequence642_561.py +87 -0
  172. PYME/Acquire/Protocols/shiftfield.py +198 -0
  173. PYME/Acquire/Protocols/simul488.py +59 -0
  174. PYME/Acquire/Protocols/simul642.py +63 -0
  175. PYME/Acquire/Protocols/simul642HTSMS.py +63 -0
  176. PYME/Acquire/Protocols/simulPA.py +37 -0
  177. PYME/Acquire/Protocols/simulSIM.py +76 -0
  178. PYME/Acquire/Protocols/simulStep.py +62 -0
  179. PYME/Acquire/Protocols/spdscan.py +178 -0
  180. PYME/Acquire/Protocols/standard470.py +45 -0
  181. PYME/Acquire/Protocols/standard488.py +47 -0
  182. PYME/Acquire/Protocols/standard671.py +48 -0
  183. PYME/Acquire/Protocols/standard671_no532.py +47 -0
  184. PYME/Acquire/Protocols/standardArclamp.py +46 -0
  185. PYME/Acquire/Protocols/strip_tile.py +204 -0
  186. PYME/Acquire/Protocols/tile.py +204 -0
  187. PYME/Acquire/Protocols/tile3D.py +192 -0
  188. PYME/Acquire/Protocols/tile671.py +190 -0
  189. PYME/Acquire/Protocols/tile_triggered.py +189 -0
  190. PYME/Acquire/Scripts/init.py +232 -0
  191. PYME/Acquire/Scripts/init_N1_Ti_Exeter_ZIx.py +374 -0
  192. PYME/Acquire/Scripts/init_N2_Ti_Zyla_lasers.py +290 -0
  193. PYME/Acquire/Scripts/init_Neo.py +266 -0
  194. PYME/Acquire/Scripts/init_NeoSim.py +159 -0
  195. PYME/Acquire/Scripts/init_TIRF.py +232 -0
  196. PYME/Acquire/Scripts/init_TIRF_Neo.py +242 -0
  197. PYME/Acquire/Scripts/init_TIRF_NeoO.py +241 -0
  198. PYME/Acquire/Scripts/init_TIRF_onecam.py +233 -0
  199. PYME/Acquire/Scripts/init_Ti.py +257 -0
  200. PYME/Acquire/Scripts/init_UOA_n.py +256 -0
  201. PYME/Acquire/Scripts/init_UOA_n2.py +246 -0
  202. PYME/Acquire/Scripts/init_Y1.py +249 -0
  203. PYME/Acquire/Scripts/init_Zyla.py +260 -0
  204. PYME/Acquire/Scripts/init_drift_tracking.py +80 -0
  205. PYME/Acquire/Scripts/init_emccd_basic.py +277 -0
  206. PYME/Acquire/Scripts/init_htsms.py +277 -0
  207. PYME/Acquire/Scripts/init_htsms_focus_lock.py +132 -0
  208. PYME/Acquire/Scripts/init_micrpi.py +45 -0
  209. PYME/Acquire/Scripts/init_orca.py +70 -0
  210. PYME/Acquire/Scripts/init_pco.py +49 -0
  211. PYME/Acquire/Scripts/init_rev.py +74 -0
  212. PYME/Acquire/Scripts/init_sim100.py +169 -0
  213. PYME/Acquire/Scripts/init_sim103.py +169 -0
  214. PYME/Acquire/Scripts/init_sim2.py +211 -0
  215. PYME/Acquire/Scripts/init_sim50.py +169 -0
  216. PYME/Acquire/Scripts/init_sim75.py +169 -0
  217. PYME/Acquire/Scripts/init_sim_drift_tracking.py +166 -0
  218. PYME/Acquire/Scripts/init_sim_htsms.py +224 -0
  219. PYME/Acquire/Scripts/init_sim_htsms_n.py +233 -0
  220. PYME/Acquire/Scripts/init_sim_main.py +229 -0
  221. PYME/Acquire/Scripts/init_sim_min.py +197 -0
  222. PYME/Acquire/Scripts/init_sim_rem.py +176 -0
  223. PYME/Acquire/Scripts/init_smi1.py +110 -0
  224. PYME/Acquire/Scripts/init_spectro.py +78 -0
  225. PYME/Acquire/Scripts/init_spim.py +116 -0
  226. PYME/Acquire/Scripts/init_thorcam.py +62 -0
  227. PYME/Acquire/Scripts/init_twophoton.py +112 -0
  228. PYME/Acquire/Scripts/init_uc480.py +262 -0
  229. PYME/Acquire/Scripts/init_ueye.py +261 -0
  230. PYME/Acquire/SpoolController.py +958 -0
  231. PYME/Acquire/Utils/MultiPointScanner.py +80 -0
  232. PYME/Acquire/Utils/__init__.py +13 -0
  233. PYME/Acquire/Utils/failsafe.py +157 -0
  234. PYME/Acquire/Utils/fastTiler.py +153 -0
  235. PYME/Acquire/Utils/pointScanner.py +496 -0
  236. PYME/Acquire/Utils/sarcSpacing.py +86 -0
  237. PYME/Acquire/Utils/strip_tiler.py +93 -0
  238. PYME/Acquire/Utils/tiler.py +464 -0
  239. PYME/Acquire/Utils/vibrationAnalysis.py +65 -0
  240. PYME/Acquire/__init__.py +44 -0
  241. PYME/Acquire/acquire_client.py +90 -0
  242. PYME/Acquire/acquire_server.py +316 -0
  243. PYME/Acquire/acquirebase.py +139 -0
  244. PYME/Acquire/acquiremainframe.py +716 -0
  245. PYME/Acquire/acquirewx.py +61 -0
  246. PYME/Acquire/acquisition_base.py +148 -0
  247. PYME/Acquire/actions.py +209 -0
  248. PYME/Acquire/autofocus.py +54 -0
  249. PYME/Acquire/eventLog.py +95 -0
  250. PYME/Acquire/event_loop.py +119 -0
  251. PYME/Acquire/frameWrangler.py +530 -0
  252. PYME/Acquire/htsms/__init__.py +8 -0
  253. PYME/Acquire/htsms/rule_ui.py +970 -0
  254. PYME/Acquire/htsms/rule_ui_v2.py +573 -0
  255. PYME/Acquire/htsms/tweeter.py +222 -0
  256. PYME/Acquire/microscope.py +1050 -0
  257. PYME/Acquire/positionTracker.py +181 -0
  258. PYME/Acquire/protocol.py +299 -0
  259. PYME/Acquire/protocol_acquisition.py +404 -0
  260. PYME/Acquire/sampleInformation.py +591 -0
  261. PYME/Acquire/sampleInformationDjangoDirect.py +446 -0
  262. PYME/Acquire/setup.py +52 -0
  263. PYME/Acquire/stackSettings.py +295 -0
  264. PYME/Acquire/stage_leveling.py +285 -0
  265. PYME/Acquire/ui/AnalysisSettingsUI.py +184 -0
  266. PYME/Acquire/ui/HDFSpoolFrame.py +584 -0
  267. PYME/Acquire/ui/__init__.py +0 -0
  268. PYME/Acquire/ui/actionUI.py +892 -0
  269. PYME/Acquire/ui/focus_lock_gui.py +149 -0
  270. PYME/Acquire/ui/intensity_trace.py +143 -0
  271. PYME/Acquire/ui/intsliders.py +222 -0
  272. PYME/Acquire/ui/lasersliders.py +329 -0
  273. PYME/Acquire/ui/mpd_picosecond_delay_panel.py +69 -0
  274. PYME/Acquire/ui/multiview_select.py +77 -0
  275. PYME/Acquire/ui/positionUI.py +519 -0
  276. PYME/Acquire/ui/preflight.py +58 -0
  277. PYME/Acquire/ui/scanner_panel.py +41 -0
  278. PYME/Acquire/ui/selectCameraPanel.py +46 -0
  279. PYME/Acquire/ui/seqdialog.py +501 -0
  280. PYME/Acquire/ui/splashScreen.py +175 -0
  281. PYME/Acquire/ui/spool_panel.py +830 -0
  282. PYME/Acquire/ui/tile_panel.py +556 -0
  283. PYME/Acquire/ui/tilesettingsui.py +91 -0
  284. PYME/Acquire/ui/voxelSizeDialog.py +149 -0
  285. PYME/Acquire/webui/__init__.py +36 -0
  286. PYME/Acquire/webui/ipy.py +361 -0
  287. PYME/Acquire/webui/static/css/pyme-bootstrap.css +9908 -0
  288. PYME/Acquire/webui/static/css/pymeacquire.css +85 -0
  289. PYME/Acquire/webui/static/js/pymeacquire.js +375 -0
  290. PYME/Acquire/webui/static/js/pzf.js +95 -0
  291. PYME/Acquire/webui/templates/PYMEAcquire.html +232 -0
  292. PYME/Acquire/webui/templates/login.html +84 -0
  293. PYME/Acquire/webui/templates/xtermpage.html +106 -0
  294. PYME/Acquire/xyztc.py +418 -0
  295. PYME/Acquire/zScanner.py +287 -0
  296. PYME/Analysis/BleachProfile/__init__.py +26 -0
  297. PYME/Analysis/BleachProfile/deMod.py +91 -0
  298. PYME/Analysis/BleachProfile/fitRecover.py +90 -0
  299. PYME/Analysis/BleachProfile/intensProf.py +519 -0
  300. PYME/Analysis/BleachProfile/kinModels.py +507 -0
  301. PYME/Analysis/BleachProfile/rawIntensity.py +227 -0
  302. PYME/Analysis/BleachProfile/rollins.py +555 -0
  303. PYME/Analysis/Colocalisation/__init__.py +27 -0
  304. PYME/Analysis/Colocalisation/colocScaleDep.py +126 -0
  305. PYME/Analysis/Colocalisation/correlationCoeffs.py +198 -0
  306. PYME/Analysis/Colocalisation/distColoc.py +110 -0
  307. PYME/Analysis/Colocalisation/edtColoc.py +191 -0
  308. PYME/Analysis/MetaData.py +278 -0
  309. PYME/Analysis/PSFEst/__init__.py +27 -0
  310. PYME/Analysis/PSFEst/dec.py +283 -0
  311. PYME/Analysis/PSFEst/extractImages.py +316 -0
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  1276. python_microscopy-25.6.5.dist-info/RECORD +1277 -0
  1277. python_microscopy-25.6.5.dist-info/WHEEL +4 -0
@@ -0,0 +1,892 @@
1
+ # -*- coding: utf-8 -*-
2
+ """
3
+ Created on Sat May 28 23:55:50 2016
4
+
5
+ @author: david
6
+ """
7
+ import wx
8
+ import numpy as np
9
+ import logging
10
+ import time
11
+
12
+ from wx.core import LIST_FORMAT_LEFT
13
+
14
+ from PYME.Acquire import actions
15
+ from PYME.ui import cascading_layout
16
+ from PYME.ui import progress
17
+
18
+ logger = logging.getLogger(__name__)
19
+
20
+ class ActionList(wx.ListCtrl):
21
+ def __init__(self, parent, actionManager, pos=wx.DefaultPosition,
22
+ size=(480, 300), style=wx.LC_REPORT|wx.LC_VIRTUAL):
23
+ wx.ListCtrl.__init__(self, parent, -1, pos, size, style)
24
+
25
+ self.actionManager = actionManager
26
+ self.actionManager.onQueueChange.connect(self.update)
27
+
28
+ self.InsertColumn(0, "When")
29
+ self.InsertColumn(1, "Priority")
30
+ self.InsertColumn(2, "Action")
31
+ #self.InsertColumn(2, "Args")
32
+ self.InsertColumn(3, "Expiry")
33
+ self.InsertColumn(4, 'Max Duration')
34
+
35
+ self.SetColumnWidth(0, 60)
36
+ self.SetColumnWidth(1, 50)
37
+ self.SetColumnWidth(2, 600)
38
+ #self.SetColumnWidth(2, 450)
39
+ self.SetColumnWidth(3, 60)
40
+ self.SetColumnWidth(4, 200)
41
+
42
+ self.Bind(wx.EVT_KEY_DOWN, self.OnKeyDown)
43
+
44
+
45
+
46
+ def OnGetItemText(self, item, col):
47
+ if item < len(self._queueItems):
48
+ vals = self._queueItems[item]
49
+ if (col==0):
50
+ return 'pending'
51
+ else:
52
+ item -= len(self._queueItems)
53
+ when, vals = self._scheduledItems[item]
54
+ if (col==0):
55
+ return time.strftime('%H:%M:%S', time.localtime(when))
56
+
57
+ val = vals[col-1]
58
+
59
+ if col == 3: # expiry is a timestamp
60
+ return time.strftime('%H:%M:%S', time.localtime(val))
61
+ else:
62
+ return repr(val)
63
+
64
+
65
+ def OnKeyDown(self, event):
66
+ #logger.info('Key down %d' % event.GetKeyCode())
67
+ if event.GetKeyCode() in (wx.WXK_DELETE, wx.WXK_BACK):
68
+ self.delete_selected()
69
+ else:
70
+ event.Skip()
71
+
72
+ def delete_selected(self):
73
+ logger.info('Deleting selected actions')
74
+ to_remove = []
75
+ to_deselect = []
76
+
77
+ idx = self.GetFirstSelected()
78
+
79
+ while idx != -1:
80
+ if idx < len(self._queueItems):
81
+ a =self._queueItems[idx]
82
+ else:
83
+ idx -= len(self._queueItems)
84
+ a = self._scheduledItems[idx]
85
+
86
+ to_remove.append(a)
87
+ to_deselect.append(idx)
88
+ idx = self.GetNextSelected(idx)
89
+
90
+ for idx in to_deselect:
91
+ self.Select(idx, on=0)
92
+
93
+ if to_remove:
94
+ self.actionManager.remove_actions(to_remove)
95
+
96
+ def update(self, **kwargs):
97
+ self._queueItems = list(self.actionManager.actionQueue.queue)
98
+ self._queueItems.sort(key=lambda a : a[0])
99
+ self._scheduledItems = list(self.actionManager.scheduledQueue.queue)
100
+ self._scheduledItems.sort(key=lambda a : a[0])
101
+ self.SetItemCount(len(self._queueItems) + len(self._scheduledItems))
102
+ self.Refresh()
103
+
104
+ ACTION_DEFAULTS = ['spoolController.start_spooling',
105
+ 'state.update',
106
+ ]
107
+
108
+ SORT_FUNCTIONS = {
109
+ 'None': lambda positions, scope_position: positions,
110
+ }
111
+
112
+ ACTION_TYPES = ['MoveTo', 'UpdateState', 'CenterROIOn', 'SpoolSeries', 'RemoteSpoolSeries', 'SimultaneousSpoolSeries', 'FunctionAction']
113
+
114
+ try:
115
+ from PYME.Analysis.points.traveling_salesperson import sort as tspsort #avoid clobbering sort() builtin
116
+ from PYME.Analysis.points.traveling_salesperson import queue_opt
117
+ SORT_FUNCTIONS.update({'TSP': tspsort.tsp_sort, 'QTSP': queue_opt.TSPQueue})
118
+ except ImportError:
119
+ pass
120
+
121
+
122
+ class SingleActionPanel(wx.Panel, cascading_layout.CascadingLayoutMixin):
123
+ description='An action that does something'
124
+ supports_then =True
125
+ num_actions = 1
126
+
127
+ def __init__(self, parent, actionManager, scope):
128
+ wx.Panel.__init__(self, parent)
129
+ self.actionManager = actionManager
130
+ self.scope = scope
131
+
132
+ self._pan_then = None
133
+
134
+ sizer = wx.BoxSizer(wx.VERTICAL)
135
+
136
+ self._init_controls(sizer)
137
+
138
+ if self.supports_then:
139
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
140
+
141
+ hsizer.Add(wx.StaticText(self, -1, 'Then:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
142
+ self.cThen = wx.Choice(self, -1, choices=['None', ] + ACTION_TYPES)
143
+ self.cThen.Bind(wx.EVT_CHOICE, self.OnThenChanged)
144
+ hsizer.Add(self.cThen, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
145
+
146
+ sizer.Add(hsizer, 0, wx.EXPAND|wx.TOP, 5)
147
+
148
+ self._then_sizer = wx.BoxSizer(wx.VERTICAL)
149
+ sizer.Add(self._then_sizer, 0, wx.EXPAND|wx.LEFT, 20)
150
+
151
+ self.SetSizerAndFit(sizer)
152
+
153
+ def _init_controls(self, sizer):
154
+ pass
155
+
156
+ def OnThenChanged(self, event):
157
+ if self._pan_then is not None:
158
+ self._pan_then.Destroy()
159
+ self._then_sizer.Clear()
160
+
161
+ then = self.cThen.GetStringSelection()
162
+ if then != 'None':
163
+ #print('Changing then to %s' % then)
164
+ self._pan_then = globals()[then + 'Panel'](self, self.actionManager, self.scope)
165
+ self._then_sizer.Add(self._pan_then, 0, wx.EXPAND, 0)
166
+ else:
167
+ self._pan_then = None
168
+
169
+ #print('re-layouting')
170
+ self.cascading_layout()
171
+
172
+ def _set_then(self, then):
173
+ self.cThen.SetSelection(ACTION_TYPES.index(then)+1)
174
+ self.OnThenChanged(None)
175
+
176
+ def get_action(self, idx=0):
177
+ action = self._get_action(idx)
178
+
179
+ if self._pan_then:
180
+ return action.then(self._pan_then.get_action(idx))
181
+ else:
182
+ return action
183
+
184
+ def get_actions(self):
185
+ return [self.get_action(i) for i in range(self.num_actions)]
186
+
187
+ def _get_action(self, idx=0):
188
+ """Return an Action object that represents the current state of the panel
189
+
190
+ This should be implemented in an action-specific subclass.
191
+ """
192
+ raise NotImplementedError('This should be implemented in a subclass')
193
+
194
+ class MoveToPanel(SingleActionPanel):
195
+ def _init_controls(self, sizer):
196
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
197
+ hsizer.Add(wx.StaticText(self, -1, 'X:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
198
+ self.tX = wx.TextCtrl(self, -1, '0', size=(50, -1))
199
+ hsizer.Add(self.tX, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
200
+
201
+ hsizer.Add(wx.StaticText(self, -1, 'Y:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
202
+ self.tY = wx.TextCtrl(self, -1, '0', size=(50, -1))
203
+ hsizer.Add(self.tY, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
204
+
205
+ self.bSetCurrent = wx.Button(self, -1, 'Use current')
206
+ self.bSetCurrent.Bind(wx.EVT_BUTTON, self.OnSetCurrent)
207
+ hsizer.Add(self.bSetCurrent, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
208
+
209
+ sizer.Add(hsizer, 0, wx.EXPAND, 0)
210
+
211
+ def OnSetCurrent(self, event):
212
+ pos = self.scope.GetPos()
213
+ self.tX.SetValue('%.2f' % pos['x'])
214
+ self.tY.SetValue('%.2f' % pos['y'])
215
+
216
+ def _get_action(self, idx=0):
217
+ x = float(self.tX.GetValue())
218
+ y = float(self.tY.GetValue())
219
+ return actions.MoveTo(x, y)
220
+
221
+ #TODO - move somewhere more sensible
222
+ from wx.lib.mixins import listctrl as listctrlMixins
223
+
224
+ class VSChoice(wx.Choice):
225
+ def SetValue(self, val):
226
+ if isinstance(val, str):
227
+ self.SetStringSelection(val)
228
+ else:
229
+ self.SetSelection(val)
230
+
231
+ def GetValue(self):
232
+ return self.GetStringSelection()
233
+
234
+ class DictEditorListCtrl(wx.ListCtrl, listctrlMixins.TextEditMixin, listctrlMixins.ListCtrlAutoWidthMixin):
235
+ def __init__(self, *args, **kwargs):
236
+ self._keys= list(kwargs.pop('keys', []))
237
+ self._choice_cols = kwargs.pop('choice_columns', [])
238
+ wx.ListCtrl.__init__(self, *args, **kwargs)
239
+ listctrlMixins.TextEditMixin.__init__(self)
240
+ listctrlMixins.ListCtrlAutoWidthMixin.__init__(self)
241
+
242
+ def make_choice_editor(self, col_style=wx.LIST_FORMAT_LEFT):
243
+ style =wx.TE_PROCESS_ENTER|wx.TE_PROCESS_TAB|wx.TE_RICH2
244
+ style |= {wx.LIST_FORMAT_LEFT: wx.TE_LEFT,
245
+ wx.LIST_FORMAT_RIGHT: wx.TE_RIGHT,
246
+ wx.LIST_FORMAT_CENTRE : wx.TE_CENTRE
247
+ }[col_style]
248
+
249
+ editor = VSChoice(self, -1, style=style, choices = ['...', ] + self._keys)
250
+ editor.SetBackgroundColour(self.editorBgColour)
251
+ editor.SetForegroundColour(self.editorFgColour)
252
+ font = self.GetFont()
253
+ editor.SetFont(font)
254
+
255
+ self.curRow = 0
256
+ self.curCol = 0
257
+
258
+ editor.Hide()
259
+ if hasattr(self, 'editor'):
260
+ self.editor.Destroy()
261
+ self.editor = editor
262
+
263
+ self.col_style = col_style
264
+ self.editor.Bind(wx.EVT_CHAR, self.OnChar)
265
+ self.editor.Bind(wx.EVT_KILL_FOCUS, self.CloseEditor)
266
+
267
+ # def make_editor(self, col_style=wx.LIST_FORMAT_LEFT):
268
+ # return self.make_choice_editor(col_style)
269
+
270
+ def OpenEditor(self, col, row):
271
+ ''' Opens an editor at the current position. '''
272
+
273
+ # give the derived class a chance to Allow/Veto this edit.
274
+ evt = wx.ListEvent(wx.wxEVT_COMMAND_LIST_BEGIN_LABEL_EDIT, self.GetId())
275
+ evt.Index = row
276
+ evt.Column = col
277
+ item = self.GetItem(row, col)
278
+ evt.Item.SetId(item.GetId())
279
+ evt.Item.SetColumn(item.GetColumn())
280
+ evt.Item.SetData(item.GetData())
281
+ evt.Item.SetText(item.GetText())
282
+ ret = self.GetEventHandler().ProcessEvent(evt)
283
+ if ret and not evt.IsAllowed():
284
+ return # user code doesn't allow the edit.
285
+
286
+
287
+ if col in self._choice_cols:
288
+ self.make_choice_editor(self.GetColumn(col).Align)
289
+ choice_editor = True
290
+ else:
291
+ self.make_editor(self.GetColumn(col).Align)
292
+ choice_editor = False
293
+
294
+ # if self.GetColumn(col).Align != self.col_style:
295
+ # self.make_editor(self.GetColumn(col).Align)
296
+
297
+ x0 = self.col_locs[col]
298
+ x1 = self.col_locs[col+1] - x0
299
+
300
+ scrolloffset = self.GetScrollPos(wx.HORIZONTAL)
301
+
302
+ # scroll forward
303
+ if x0+x1-scrolloffset > self.GetSize()[0]:
304
+ if wx.Platform == "__WXMSW__":
305
+ # don't start scrolling unless we really need to
306
+ offset = x0+x1-self.GetSize()[0]-scrolloffset
307
+ # scroll a bit more than what is minimum required
308
+ # so we don't have to scroll everytime the user presses TAB
309
+ # which is very tireing to the eye
310
+ addoffset = self.GetSize()[0]/4
311
+ # but be careful at the end of the list
312
+ if addoffset + scrolloffset < self.GetSize()[0]:
313
+ offset += addoffset
314
+
315
+ self.ScrollList(offset, 0)
316
+ scrolloffset = self.GetScrollPos(wx.HORIZONTAL)
317
+ else:
318
+ # Since we can not programmatically scroll the ListCtrl
319
+ # close the editor so the user can scroll and open the editor
320
+ # again
321
+ self.editor.SetValue(self.GetItem(row, col).GetText())
322
+ self.curRow = row
323
+ self.curCol = col
324
+ self.CloseEditor()
325
+ return
326
+
327
+ y0 = self.GetItemRect(row)[1]
328
+
329
+ def _activate_editor(editor):
330
+ editor.SetSize(x0-scrolloffset,y0, x1,-1, wx.SIZE_USE_EXISTING)
331
+ editor.SetValue(self.GetItem(row, col).GetText())
332
+ editor.Show()
333
+ editor.Raise()
334
+ if not choice_editor:
335
+ editor.SetSelection(-1,-1)
336
+ editor.SetFocus()
337
+
338
+ wx.CallAfter(_activate_editor, self.editor)
339
+
340
+ self.curRow = row
341
+ self.curCol = col
342
+
343
+ class UpdateStatePanel(SingleActionPanel):
344
+ def _init_controls(self, sizer):
345
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
346
+ hsizer.Add(wx.StaticText(self, -1, 'State:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
347
+ #self.tState = wx.TextCtrl(self, -1, '', size=(150, -1))
348
+ #hsizer.Add(self.tState, 1, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
349
+ self.lState = DictEditorListCtrl(self, -1, style=wx.LC_REPORT|wx.LC_EDIT_LABELS,size=(-1, 100),
350
+ keys=self.scope.state.keys(), choice_columns=[0,])
351
+
352
+ self.lState.InsertColumn(0, 'Key')
353
+ self.lState.SetColumnWidth(0, 300)
354
+ self.lState.InsertColumn(1, 'Value')
355
+ #self.lState.makeColumnEditable(0)
356
+ #self.lState.makeColumnEditable(1)
357
+
358
+ # start with a blank entry
359
+ self.lState.InsertItem(0, '...')
360
+ self.lState.SetItem(0, 1, '')
361
+
362
+ self.lState.Bind(wx.EVT_LIST_END_LABEL_EDIT, self.OnEndLabelEdit)
363
+
364
+ hsizer.Add(self.lState, 1, wx.EXPAND|wx.ALL, 2)
365
+ sizer.Add(hsizer, 0, wx.EXPAND, 0)
366
+
367
+ def OnEndLabelEdit(self, event):
368
+ if event.GetText() not in ('', '...') and event.GetColumn() == 0:
369
+ row = event.GetIndex()
370
+ key = event.GetText()
371
+ if self.lState.GetItemText(row, 1) == '':
372
+ self.lState.SetItem(row, 1, str(self.scope.state.get(key, '')))
373
+
374
+ if event.GetIndex() == (self.lState.GetItemCount() -1) and not event.GetText() in ('', '...'):
375
+ # add a new empty row
376
+ self.lState.InsertItem(self.lState.GetItemCount(), '...')
377
+ self.lState.SetItem(self.lState.GetItemCount()-1, 1, '')
378
+
379
+ def _get_action(self, idx=0):
380
+ # TODO - use a cleaner dictionary editor
381
+
382
+ state = {}
383
+ for i in range(self.lState.GetItemCount()):
384
+ key = self.lState.GetItemText(i, 0)
385
+ val = self.lState.GetItemText(i, 1)
386
+ if key not in ('', '...'):
387
+ state[key] = eval(val)
388
+ #state = eval('dict(%s)' % self.tState.GetValue())
389
+ return actions.UpdateState(state)
390
+
391
+ class CenterROIOnPanel(SingleActionPanel):
392
+ def _init_controls(self, sizer):
393
+
394
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
395
+ self.rbModeSingle = wx.RadioButton(self, -1, 'Single ROI', style=wx.RB_GROUP)
396
+ self.rbModeSingle.SetValue(True)
397
+ self.rbModeSingle.Bind(wx.EVT_RADIOBUTTON, self.OnSetMode)
398
+ hsizer.Add(self.rbModeSingle, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
399
+
400
+ self.rbModeROIList = wx.RadioButton(self, -1, 'ROI List')
401
+ self.rbModeROIList.Bind(wx.EVT_RADIOBUTTON, self.OnSetMode)
402
+ hsizer.Add(self.rbModeROIList, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
403
+
404
+ sizer.Add(hsizer, 0, wx.EXPAND, 0)
405
+
406
+ # single mode
407
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
408
+ self.stXLabel = wx.StaticText(self, -1, 'X:')
409
+ hsizer.Add(self.stXLabel, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
410
+ self.tX = wx.TextCtrl(self, -1, '0', size=(50, -1))
411
+ hsizer.Add(self.tX, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
412
+
413
+ self.stYLabel = wx.StaticText(self, -1, 'Y:')
414
+ hsizer.Add(self.stYLabel, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
415
+ self.tY = wx.TextCtrl(self, -1, '0', size=(50, -1))
416
+ hsizer.Add(self.tY, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
417
+
418
+ self.bSetCurrent = wx.Button(self, -1, 'Use current centre')
419
+ self.bSetCurrent.Bind(wx.EVT_BUTTON, self.OnSetCurrent)
420
+ hsizer.Add(self.bSetCurrent, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
421
+
422
+ sizer.Add(hsizer, 0, wx.EXPAND, 0)
423
+
424
+ #ROI list mode
425
+ self.stROIList = wx.StaticText(self, -1, 'No rois specified')
426
+ sizer.Add(self.stROIList, 0, wx.EXPAND, 0)
427
+
428
+ hsizer = wx.BoxSizer(wx.HORIZONTAL) #wx.StaticBoxSizer(wx.StaticBox(self, label='Queue acquisitions for each ROI'), wx.HORIZONTAL)
429
+
430
+ self.stSortFcnLabel = wx.StaticText(self, -1, 'Sort Function:')
431
+ hsizer.Add(self.stSortFcnLabel, 0, wx.ALIGN_CENTER_VERTICAL | wx.ALL, 2)
432
+ self.SortSelect = wx.ComboBox(self, -1, 'None', choices=list(SORT_FUNCTIONS.keys()), size=(150, -1))
433
+ hsizer.Add(self.SortSelect, 0, wx.ALIGN_CENTER_VERTICAL | wx.ALL, 2)
434
+
435
+ self.bQueueROIsFromFile = wx.Button(self, -1, 'from file')
436
+ self.bQueueROIsFromFile.Bind(wx.EVT_BUTTON, self.OnROIsFromFile)
437
+ hsizer.Add(self.bQueueROIsFromFile, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
438
+
439
+ self.bQueueROIsFromTileviewer = wx.Button(self, -1, 'from Tile Viewer')
440
+ self.bQueueROIsFromTileviewer.Bind(wx.EVT_BUTTON, self.OnROIsFromTileviewer)
441
+ hsizer.Add(self.bQueueROIsFromTileviewer, 0, wx.ALIGN_CENTER_VERTICAL | wx.ALL, 2)
442
+
443
+ sizer.Add(hsizer, 0, wx.EXPAND, 0)
444
+
445
+ self.OnSetMode(None)
446
+
447
+ wx.CallAfter(self._set_then, 'SpoolSeries')
448
+
449
+ def OnSetCurrent(self, event):
450
+ x, y = self.scope.get_roi_centre()
451
+ self.tX.SetValue('%.2f' % x)
452
+ self.tY.SetValue('%.2f' % y)
453
+
454
+ def _get_action(self, idx=0):
455
+ if self.rbModeSingle.GetValue():
456
+ x = float(self.tX.GetValue())
457
+ y = float(self.tY.GetValue())
458
+ return actions.CentreROIOn(x, y)
459
+ else:
460
+ try:
461
+ x, y = self._rois[idx, :]
462
+ except AttributeError:
463
+ raise ValueError('No ROIs have been loaded')
464
+ return actions.CentreROIOn(x, y)
465
+
466
+ @property
467
+ def num_actions(self):
468
+ if self.rbModeSingle.GetValue():
469
+ return 1
470
+ else:
471
+ try:
472
+ return len(self._rois)
473
+ except AttributeError:
474
+ raise ValueError('No ROIs have been loaded')
475
+
476
+ def OnSetMode(self, event):
477
+ if self.rbModeSingle.GetValue():
478
+ self.stXLabel.Show()
479
+ self.tX.Show()
480
+ self.stYLabel.Show()
481
+ self.tY.Show()
482
+ self.bSetCurrent.Show()
483
+
484
+ self.stROIList.Hide()
485
+ self.stSortFcnLabel.Hide()
486
+ self.SortSelect.Hide()
487
+ self.bQueueROIsFromFile.Hide()
488
+ self.bQueueROIsFromTileviewer.Hide()
489
+ else:
490
+ self.stXLabel.Hide()
491
+ self.tX.Hide()
492
+ self.stYLabel.Hide()
493
+ self.tY.Hide()
494
+ self.bSetCurrent.Hide()
495
+
496
+ self.stROIList.Show()
497
+ self.stSortFcnLabel.Show()
498
+ self.SortSelect.Show()
499
+ self.bQueueROIsFromFile.Show()
500
+ self.bQueueROIsFromTileviewer.Show()
501
+
502
+ wx.CallAfter(self.cascading_layout)
503
+
504
+ def _add_ROIs(self, rois):
505
+ positions = np.reshape(rois, (len(rois), 2)).astype(float)
506
+
507
+ # apply sorting function
508
+ scope_pos = self.scope.GetPos()
509
+ positions = SORT_FUNCTIONS[self.SortSelect.GetValue()](positions, (scope_pos['x'], scope_pos['y']))
510
+
511
+ self._rois = positions
512
+
513
+ self.stROIList.SetLabel('Loaded %d ROIs' % len(self._rois))
514
+
515
+
516
+ def OnROIsFromFile(self, event):
517
+ # TODO - support .csv as well
518
+ import wx
519
+ from PYME.IO import tabular
520
+
521
+ filename = wx.FileSelector("Load ROI Positions:", wildcard="*.hdf", flags=wx.FD_OPEN)
522
+ if not filename == '':
523
+ rois = tabular.HDFSource(filename, tablename='roi_locations')
524
+
525
+ rois = [(x, y) for x, y in zip(rois['x_um'], rois['y_um'])]
526
+
527
+ self._add_ROIs(rois)
528
+
529
+ def OnROIsFromTileviewer(self, event):
530
+ import requests
531
+ resp = requests.get('http://localhost:8979/get_roi_locations')
532
+ if resp.status_code != 200:
533
+ raise requests.HTTPError('Could not get ROI locations')
534
+
535
+ rois = np.array(resp.json())
536
+ self._add_ROIs(rois)
537
+
538
+
539
+
540
+
541
+
542
+ class SpoolSeriesPanel(SingleActionPanel):
543
+ supports_then = False
544
+
545
+ def __init__(self, parent, actionManager, scope):
546
+ super().__init__(parent, actionManager, scope)
547
+
548
+ self._disp_aqType = None
549
+ self._aq_settings_string = None
550
+
551
+ #scope.spoolController.onSettingsChange.connect(self._update)
552
+
553
+ def _init_controls(self, sizer):
554
+ self.stAqType = wx.StaticText(self, -1, 'Add an acquisition using the currently selected type and settings')
555
+ sizer.Add(self.stAqType, 0, wx.ALL, 2)
556
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
557
+ self.stNumFramesLabel = wx.StaticText(self, -1, 'Max frames:')
558
+ hsizer.Add(self.stNumFramesLabel, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
559
+ self.tNumFrames = wx.TextCtrl(self, -1, '10000', size=(50, -1))
560
+ hsizer.Add(self.tNumFrames, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
561
+ sizer.Add(hsizer, 0, wx.EXPAND, 0)
562
+
563
+ self._mf = self.GetTopLevelParent()
564
+ self._mf.time1.register_callback(self._update)
565
+
566
+ def _get_action(self, idx=0):
567
+ settings = self.scope.spoolController.get_settings()
568
+ settings['max_frames'] = int(self.tNumFrames.GetValue())
569
+ return actions.SpoolSeries(settings=settings, preflight_mode='warn', )
570
+
571
+ def _update(self, **kwargs):
572
+ if not self:
573
+ self._mf.time1.unregister_callback(self._update)
574
+ del self._mf # free the reference to the main frame
575
+ return
576
+
577
+ aqType = self.scope.spoolController.acquisition_type
578
+ aq_string = f'{aqType} with the following settings:\n{self.scope.spoolController.get_settings()}'
579
+
580
+ if (self._disp_aqType != aqType) or (self._aq_settings_string != aq_string):
581
+ # only update if the settings have changed
582
+ if aqType == 'ProtocolAcquisition':
583
+ self.stNumFramesLabel.Show()
584
+ self.tNumFrames.Show()
585
+ else:
586
+ self.stNumFramesLabel.Hide()
587
+ self.tNumFrames.Hide()
588
+
589
+ self.stAqType.SetLabel(aq_string)
590
+ self.stAqType.Wrap(self.GetSize()[0]-5)
591
+
592
+ self.cascading_layout()
593
+
594
+ self._disp_aqType = aqType
595
+ self._aq_settings_string = aq_string
596
+
597
+
598
+
599
+ class RemoteSpoolSeriesPanel(SpoolSeriesPanel):
600
+ supports_then = False
601
+
602
+ def __init__(self, parent, actionManager, scope):
603
+ super().__init__(parent, actionManager, scope)
604
+
605
+ #scope.spoolController.onSettingsChange.connect(self._update)
606
+
607
+ def _init_controls(self, sizer):
608
+ self.stAqType = wx.StaticText(self, -1, 'Add a remote acquisition using the remotely selected type and settings')
609
+ sizer.Add(self.stAqType, 0, wx.ALL, 2)
610
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
611
+ self.stRemoteInstanceName = wx.StaticText(self, -1, 'Remote instance name:')
612
+ hsizer.Add(self.stRemoteInstanceName, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
613
+ self.tRemoteInstanceName = wx.TextCtrl(self, -1, 'remote_acquire_instance', size=(150, -1))
614
+ hsizer.Add(self.tRemoteInstanceName, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
615
+ self.stNumFramesLabel = wx.StaticText(self, -1, 'Max frames:')
616
+ hsizer.Add(self.stNumFramesLabel, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
617
+ self.tNumFrames = wx.TextCtrl(self, -1, '10000', size=(50, -1))
618
+ hsizer.Add(self.tNumFrames, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
619
+ sizer.Add(hsizer, 0, wx.EXPAND, 0)
620
+
621
+ def _get_action(self, idx=0):
622
+ # use remote settings for acquisition type and type-specific settings
623
+ remote_instance = self.tRemoteInstanceName.GetValue()
624
+ settings = getattr(self.scope, remote_instance).spooling_info()['settings']
625
+
626
+ # use local settings for spool method and compression
627
+ settings.update(self.scope.spoolController.get_settings(method_only=True))
628
+ settings['max_frames'] = int(self.tNumFrames.GetValue())
629
+
630
+ return actions.RemoteSpoolSeries(remote_instance=remote_instance,settings=settings, preflight_mode='warn', )
631
+
632
+ class SimultaneousSpoolSeriesPanel(SpoolSeriesPanel):
633
+ supports_then = False
634
+
635
+ def __init__(self, parent, actionManager, scope):
636
+ super().__init__(parent, actionManager, scope)
637
+
638
+ #scope.spoolController.onSettingsChange.connect(self._update)
639
+
640
+ def _init_controls(self, sizer):
641
+ self.stAqType = wx.StaticText(self, -1, 'Add simultaneously executing remote and local acquisition')
642
+ sizer.Add(self.stAqType, 0, wx.ALL, 2)
643
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
644
+ self.stRemoteInstanceName = wx.StaticText(self, -1, 'Remote instance name:')
645
+ hsizer.Add(self.stRemoteInstanceName, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
646
+ self.tRemoteInstanceName = wx.TextCtrl(self, -1, 'remote_acquire_instance', size=(150, -1))
647
+ hsizer.Add(self.tRemoteInstanceName, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
648
+ self.stNumFramesLabel = wx.StaticText(self, -1, 'Max frames:')
649
+ hsizer.Add(self.stNumFramesLabel, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
650
+ self.tNumFrames = wx.TextCtrl(self, -1, '10000', size=(50, -1))
651
+ hsizer.Add(self.tNumFrames, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
652
+ sizer.Add(hsizer, 0, wx.EXPAND, 0)
653
+
654
+ def _get_action(self, idx=0):
655
+ # use remote settings for acquisition type and type-specific settings
656
+ remote_instance = self.tRemoteInstanceName.GetValue()
657
+ remote_settings = getattr(self.scope, remote_instance).spooling_info()['settings']
658
+
659
+ # use local settings for spool method and compression
660
+ remote_settings.update(self.scope.spoolController.get_settings(method_only=True))
661
+ remote_settings['max_frames'] = int(self.tNumFrames.GetValue())
662
+
663
+ local_settings = self.scope.spoolController.get_settings()
664
+ local_settings['max_frames'] = int(self.tNumFrames.GetValue())
665
+
666
+ return actions.SimultaeneousSpoolSeries(remote_instance=remote_instance,local_settings=local_settings, remote_settings=remote_settings, preflight_mode='warn', )
667
+
668
+
669
+ # def _update(self, **kwargs):
670
+ # aqType = self.scope.spoolController.acquisition_type
671
+ # if aqType == 'ProtocolAcquisition':
672
+ # self.stNumFramesLabel.Show()
673
+ # self.tNumFrames.Show()
674
+ # else:
675
+ # self.stNumFramesLabel.Hide()
676
+ # self.tNumFrames.Hide()
677
+
678
+ # self.stAqType.SetLabel(f'An {aqType} acquisition will be added with the following settings: {self.scope.spoolController.get_settings()}')
679
+
680
+ # self.cascading_layout()
681
+
682
+
683
+ class FunctionActionPanel(SingleActionPanel):
684
+ supports_then = False
685
+
686
+ def _init_controls(self, sizer):
687
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
688
+ hsizer.Add(wx.StaticText(self, -1, 'Function:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
689
+ self.tFunction = wx.ComboBox(self, -1, '', choices=ACTION_DEFAULTS,size=(150, -1))
690
+ hsizer.Add(self.tFunction, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
691
+
692
+ hsizer.Add(wx.StaticText(self, -1, 'Args:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
693
+ self.tArgs = wx.TextCtrl(self, -1, '', size=(150, -1))
694
+ hsizer.Add(self.tArgs, 1, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
695
+ sizer.Add(hsizer)
696
+
697
+ def _get_action(self, idx=0):
698
+ function_name = self.tFunction.GetValue()
699
+ args = eval('dict(%s)' % self.tArgs.GetValue())
700
+ return actions.FunctionAction(function_name, args)
701
+
702
+
703
+ class ActionPanel(wx.Panel, cascading_layout.CascadingLayoutMixin):
704
+ def __init__(self, parent, actionManager, scope):
705
+ wx.Panel.__init__(self, parent)
706
+ self.actionManager = actionManager
707
+ self.scope = scope
708
+
709
+ vsizer = wx.BoxSizer(wx.VERTICAL)
710
+ self.actionList = ActionList(self, self.actionManager)
711
+ vsizer.Add(self.actionList, 1, wx.EXPAND, 0)
712
+
713
+ self.add_single_sizer = wx.StaticBoxSizer(wx.StaticBox(self, label='Add Action(s)'), wx.VERTICAL)
714
+
715
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
716
+ hsizer.Add(wx.StaticText(self, -1, 'Action type:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
717
+ self.cActionType = wx.Choice(self, -1, choices=ACTION_TYPES)
718
+ self.cActionType.SetSelection(ACTION_TYPES.index('CenterROIOn'))
719
+ self.cActionType.Bind(wx.EVT_CHOICE, self.OnActionChanged)
720
+ hsizer.Add(self.cActionType, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
721
+ self.add_single_sizer.Add(hsizer, 0, wx.EXPAND, 0)
722
+
723
+ self._pan_action = CenterROIOnPanel(self, self.actionManager, self.scope)
724
+ self._pan_action_sizer = wx.BoxSizer(wx.VERTICAL)
725
+ self._pan_action_sizer.Add(self._pan_action, 0, wx.EXPAND, 0)
726
+ self.add_single_sizer.Add(self._pan_action_sizer, 0, wx.EXPAND|wx.LEFT, 20)
727
+
728
+ vsizer.Add(wx.StaticLine(self, -1, style=wx.LI_HORIZONTAL), 0, wx.EXPAND|wx.ALL, 5)
729
+
730
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
731
+
732
+ hsizer.Add(wx.StaticText(self, -1, 'Delay[s]:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
733
+ self.tDelay = wx.TextCtrl(self, -1, '0', size=(40, -1))
734
+ hsizer.Add(self.tDelay, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
735
+
736
+
737
+ hsizer.Add(wx.StaticText(self, -1, 'Repetitions:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
738
+ self.tRepeats = wx.TextCtrl(self, -1, '1', size=(30, -1))
739
+ hsizer.Add(self.tRepeats, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
740
+
741
+ hsizer.Add(wx.StaticText(self, -1, 'Period [s]:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
742
+ self.tPeriod = wx.TextCtrl(self, -1, '0', size=(30, -1))
743
+ hsizer.Add(self.tPeriod, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
744
+
745
+ hsizer.Add(wx.StaticText(self, -1, 'Nice:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
746
+ self.tNice = wx.TextCtrl(self, -1, '10', size=(30, -1))
747
+ hsizer.Add(self.tNice, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
748
+
749
+ self.add_single_sizer.Add(hsizer, 0, wx.EXPAND|wx.TOP, 15)
750
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
751
+
752
+ hsizer.Add(wx.StaticText(self, -1, 'Timeout [s]:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
753
+ self.tTimeout = wx.TextCtrl(self, -1, '1000000', size=(50, -1))
754
+ hsizer.Add(self.tTimeout, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
755
+
756
+ hsizer.Add(wx.StaticText(self, -1, 'Max duration [s]:'), 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
757
+ self.t_duration = wx.TextCtrl(self, -1, '3600', size=(50, -1))
758
+ hsizer.Add(self.t_duration, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
759
+
760
+ hsizer.AddStretchSpacer()
761
+
762
+ self.bAdd = wx.Button(self, -1, 'Add', style=wx.BU_EXACTFIT)
763
+ self.bAdd.Bind(wx.EVT_BUTTON, progress.managed(self.OnAddActions, self, 'Adding action'))
764
+ hsizer.Add(self.bAdd, 0, wx.ALIGN_CENTER_VERTICAL|wx.ALL, 2)
765
+
766
+ self.add_single_sizer.Add(hsizer, 0, wx.EXPAND|wx.TOP, 2)
767
+ vsizer.Add(self.add_single_sizer, 0, wx.EXPAND, 0)
768
+
769
+
770
+ hsizer = wx.BoxSizer(wx.HORIZONTAL)
771
+ self.bPause = wx.Button(self, -1, 'Pause')
772
+ self.bPause.Bind(wx.EVT_BUTTON, self.OnPauseActions)
773
+
774
+ hsizer.AddStretchSpacer()
775
+ hsizer.Add(self.bPause, 0, wx.ALIGN_CENTRE_VERTICAL|wx.ALL, 2)
776
+
777
+ vsizer.Add(hsizer, 0, wx.EXPAND, 0)
778
+
779
+
780
+ #hsizer.Add(vsizer, 0, 0, 0)
781
+
782
+ self.SetSizerAndFit(vsizer)
783
+
784
+ def OnActionChanged(self, event):
785
+ if self._pan_action is not None:
786
+ self._pan_action.Destroy()
787
+ self._pan_action_sizer.Clear()
788
+
789
+ action = self.cActionType.GetStringSelection()
790
+ if action != 'None':
791
+ #print('Changing action to %s' % action)
792
+ self._pan_action = globals()[action + 'Panel'](self, self.actionManager, self.scope)
793
+ self._pan_action_sizer.Add(self._pan_action, 0, wx.EXPAND, 0)
794
+ else:
795
+ self._pan_action = None
796
+ logger.warning('No action selected (we shouldn\'t get here)')
797
+
798
+ #print('re-layouting')
799
+ self.cascading_layout()
800
+
801
+ def OnPauseActions(self, event):
802
+ if self.actionManager.paused:
803
+ self.actionManager.paused = False
804
+ self.bPause.SetLabel('Pause')
805
+ else:
806
+ self.actionManager.paused = True
807
+ self.bPause.SetLabel('Resume')
808
+
809
+
810
+ def OnAddActions(self, event):
811
+ delay = float(self.tDelay.GetValue())
812
+ nice = float(self.tNice.GetValue())
813
+ #functionName = self.tFunction.GetValue()
814
+ #args = eval('dict(%s)' % self.tArgs.GetValue())
815
+ timeout = float(self.tTimeout.GetValue())
816
+ max_duration = float(self.t_duration.GetValue())
817
+
818
+ repetitions = int(self.tRepeats.GetValue())
819
+ period = float(self.tPeriod.GetValue())
820
+
821
+ if delay > 0:
822
+ execute_after = time.time() + delay
823
+ else:
824
+ execute_after = time.time()
825
+
826
+ #self.actionManager.QueueAction(functionName, args, nice, timeout,
827
+ # max_duration, execute_after=execute_after)'
828
+ actions = self._pan_action.get_actions()
829
+
830
+ # FIXME - this is a very empirical - maybe revisit
831
+ t_est = actions[0].estimated_duration(self.scope)
832
+ logger.debug('Expect actions to complete in %.1f s' % t_est)
833
+ max_duration = max(2*t_est, max_duration)
834
+ timeout = max(max_duration*len(actions), timeout)
835
+
836
+ for i in range(repetitions):
837
+ self.actionManager.queue_actions(actions, nice, timeout, max_duration, execute_after=execute_after)
838
+ execute_after += period
839
+
840
+
841
+ # def _add_ROIs(self, rois):
842
+ # """
843
+ # Add ROI positioning and spooling actions to queue.
844
+
845
+ # Parameters
846
+ # ----------
847
+ # rois: list-like
848
+ # list of ROI (x, y) positions, or array of shape (n_roi, 2). Units in micrometers.
849
+
850
+ # Notes
851
+ # -----
852
+ # Currently ignores the `Max Duration` GUI control, ensuring the timeout
853
+ # is long enough for all queued ROI tasks, and with 10 s max duration on
854
+ # movements and ~2x acquisition time max durations for spooling series.
855
+ # """
856
+
857
+ # # coordinates are for the centre of ROI, and are referenced to the 0,0 pixel of the camera,
858
+ # # correct this for a custom ROI.
859
+ # roi_offset_x, roi_offset_y = self.scope.get_roi_offset()
860
+
861
+ # # subtract offset and reshape to N x 2 array
862
+ # positions = np.reshape(rois, (len(rois), 2)).astype(float) - np.array([roi_offset_x, roi_offset_y])[None, :]
863
+
864
+ # # apply sorting function
865
+ # scope_pos = self.scope.GetPos()
866
+ # positions = SORT_FUNCTIONS[self.SortSelect.GetValue()](positions, (scope_pos['x'], scope_pos['y']))
867
+
868
+ # # get queue parameters
869
+ # n_frames = int(self.tNumFrames.GetValue())
870
+ # nice = float(self.tNice.GetValue())
871
+ # try:
872
+ # time_est = 1.25 * n_frames / self.scope.cam.GetFPS() # per series
873
+ # except NotImplementedError:
874
+ # # specifically the simulated camera here, which has a non-predictable frame rate
875
+ # # use a conservative default of 10 s/frame (should not matter as simulation will generally not be doing 10s of thousands of series)
876
+ # time_est = 10*n_frames
877
+
878
+ # logger.debug('Expecting series to complete in %.1f s each' % time_est)
879
+ # # allow enough time for what we queue
880
+ # timeout = max(float(self.tTimeout.GetValue()),
881
+ # positions.shape[0] * time_est)
882
+
883
+ # acts = []
884
+ # for ri in range(positions.shape[0]):
885
+ # state = {'Positioning.x': positions[ri, 0], 'Positioning.y': positions[ri, 1]}
886
+ # settings = {'max_frames': n_frames, 'z_stepped': bool(self.rbZStepped.GetValue())}
887
+
888
+ # acts.append(actions.UpdateState(state).then(actions.SpoolSeries(settings=settings, preflight_mode='warn')))
889
+
890
+ # self.actionManager.queue_actions(acts, nice, timeout, 2 * time_est)
891
+
892
+