python-microscopy 25.6.5__cp39-cp39-win_amd64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- PYME/Acquire/ActionManager.py +450 -0
- PYME/Acquire/ExecTools.py +235 -0
- PYME/Acquire/Hardware/AAOptoelectronics/MDS.py +175 -0
- PYME/Acquire/Hardware/AAOptoelectronics/__init__.py +0 -0
- PYME/Acquire/Hardware/ARCoptix/__init__.py +0 -0
- PYME/Acquire/Hardware/ARCoptix/lcdriver.py +149 -0
- PYME/Acquire/Hardware/ARCoptix/lcserver32.py +123 -0
- PYME/Acquire/Hardware/AndorIXon/AndorCam.py +1095 -0
- PYME/Acquire/Hardware/AndorIXon/AndorControlFrame.py +312 -0
- PYME/Acquire/Hardware/AndorIXon/AndorIXon.py +737 -0
- PYME/Acquire/Hardware/AndorIXon/__init__.py +27 -0
- PYME/Acquire/Hardware/AndorNeo/AndorNeo.py +644 -0
- PYME/Acquire/Hardware/AndorNeo/AndorNeoControlFrame.py +161 -0
- PYME/Acquire/Hardware/AndorNeo/AndorZyla.py +761 -0
- PYME/Acquire/Hardware/AndorNeo/SDK3.py +307 -0
- PYME/Acquire/Hardware/AndorNeo/SDK3Cam.py +171 -0
- PYME/Acquire/Hardware/AndorNeo/ZylaControlPanel.py +105 -0
- PYME/Acquire/Hardware/AndorNeo/__init__.py +22 -0
- PYME/Acquire/Hardware/AndorNeo/parseAtdebug.py +46 -0
- PYME/Acquire/Hardware/AndorNeo/plotTimings.py +73 -0
- PYME/Acquire/Hardware/AndorNeo/testNeo.py +62 -0
- PYME/Acquire/Hardware/Camera.py +1199 -0
- PYME/Acquire/Hardware/CameraSkeleton.py +642 -0
- PYME/Acquire/Hardware/Coherent/OBIS.py +147 -0
- PYME/Acquire/Hardware/Coherent/Sapphire.py +162 -0
- PYME/Acquire/Hardware/Coherent/__init__.py +0 -0
- PYME/Acquire/Hardware/DMDGui.py +198 -0
- PYME/Acquire/Hardware/DigiData/DigiData.py +95 -0
- PYME/Acquire/Hardware/DigiData/DigiDataClient.py +30 -0
- PYME/Acquire/Hardware/DigiData/RemoteDigiData.py +51 -0
- PYME/Acquire/Hardware/DigiData/__init__.py +24 -0
- PYME/Acquire/Hardware/DigiData/axDD132x.py +348 -0
- PYME/Acquire/Hardware/EMCCDTheory.py +41 -0
- PYME/Acquire/Hardware/ExciterWheel.py +167 -0
- PYME/Acquire/Hardware/FilterWheel.py +184 -0
- PYME/Acquire/Hardware/FocCorr.py +106 -0
- PYME/Acquire/Hardware/FocCorrR.py +196 -0
- PYME/Acquire/Hardware/FrFilter.py +51 -0
- PYME/Acquire/Hardware/GCS/GCS_DLL.py +370 -0
- PYME/Acquire/Hardware/GCS/__init__.py +0 -0
- PYME/Acquire/Hardware/GCS/gcs.py +210 -0
- PYME/Acquire/Hardware/HamamatsuDCAM/HamamatsuDCAM.py +662 -0
- PYME/Acquire/Hardware/HamamatsuDCAM/HamamatsuORCA.py +602 -0
- PYME/Acquire/Hardware/HamamatsuDCAM/Hamamatsu_control_panel.py +54 -0
- PYME/Acquire/Hardware/HamamatsuDCAM/__init__.py +23 -0
- PYME/Acquire/Hardware/LaserControlFrame.py +160 -0
- PYME/Acquire/Hardware/MPBCommunications/MPBCW.py +132 -0
- PYME/Acquire/Hardware/MPBCommunications/__init__.py +0 -0
- PYME/Acquire/Hardware/Mercury/Mercury.py +269 -0
- PYME/Acquire/Hardware/Mercury/PI_Mercury_GCS_DLL.py +857 -0
- PYME/Acquire/Hardware/Mercury/__init__.py +22 -0
- PYME/Acquire/Hardware/Mercury/mercuryStepper.py +203 -0
- PYME/Acquire/Hardware/Mercury/mercuryStepperGCS.py +281 -0
- PYME/Acquire/Hardware/NikonTE2000.py +68 -0
- PYME/Acquire/Hardware/NikonTi.py +214 -0
- PYME/Acquire/Hardware/NikonTiGUI.py +81 -0
- PYME/Acquire/Hardware/OrielCornerstone.py +125 -0
- PYME/Acquire/Hardware/PM100USB.py +51 -0
- PYME/Acquire/Hardware/Piezos/__init__.py +22 -0
- PYME/Acquire/Hardware/Piezos/base_piezo.py +108 -0
- PYME/Acquire/Hardware/Piezos/offsetPiezo.py +162 -0
- PYME/Acquire/Hardware/Piezos/offsetPiezoREST.py +308 -0
- PYME/Acquire/Hardware/Piezos/piezo_c867.py +486 -0
- PYME/Acquire/Hardware/Piezos/piezo_e255.py +68 -0
- PYME/Acquire/Hardware/Piezos/piezo_e662.py +61 -0
- PYME/Acquire/Hardware/Piezos/piezo_e709.py +434 -0
- PYME/Acquire/Hardware/Piezos/piezo_e816.py +452 -0
- PYME/Acquire/Hardware/Piezos/piezo_e816_corr.py +70 -0
- PYME/Acquire/Hardware/Piezos/piezo_e816_dll.py +518 -0
- PYME/Acquire/Hardware/Piezos/piezo_e816b.py +70 -0
- PYME/Acquire/Hardware/Piezos/piezo_pipython_gcs.py +560 -0
- PYME/Acquire/Hardware/Piezos/piezo_test.py +55 -0
- PYME/Acquire/Hardware/Simulator/EmpiricalHist.py +273 -0
- PYME/Acquire/Hardware/Simulator/__init__.py +22 -0
- PYME/Acquire/Hardware/Simulator/dSimControl.py +961 -0
- PYME/Acquire/Hardware/Simulator/fakeCam.py +651 -0
- PYME/Acquire/Hardware/Simulator/fakePiezo.py +95 -0
- PYME/Acquire/Hardware/Simulator/fluor.py +336 -0
- PYME/Acquire/Hardware/Simulator/illuminate.cp39-win_amd64.dll.a +0 -0
- PYME/Acquire/Hardware/Simulator/illuminate.cp39-win_amd64.pyd +0 -0
- PYME/Acquire/Hardware/Simulator/illuminate.pyx +93 -0
- PYME/Acquire/Hardware/Simulator/lasersliders.py +90 -0
- PYME/Acquire/Hardware/Simulator/rend_im.py +446 -0
- PYME/Acquire/Hardware/Simulator/setup.py +69 -0
- PYME/Acquire/Hardware/Simulator/simcontrol.py +348 -0
- PYME/Acquire/Hardware/Simulator/simui_wx.py +794 -0
- PYME/Acquire/Hardware/Tango/__init__.py +0 -0
- PYME/Acquire/Hardware/Tango/marzhauser_tango.py +583 -0
- PYME/Acquire/Hardware/TiLightCrafter.py +388 -0
- PYME/Acquire/Hardware/__init__.py +22 -0
- PYME/Acquire/Hardware/aotf.py +271 -0
- PYME/Acquire/Hardware/arclampshutterpanel.py +71 -0
- PYME/Acquire/Hardware/cameraSoftwareBuffer.py +215 -0
- PYME/Acquire/Hardware/camera_noise.py +270 -0
- PYME/Acquire/Hardware/ccdAdjPanel.py +188 -0
- PYME/Acquire/Hardware/ccdCalibrator.py +161 -0
- PYME/Acquire/Hardware/cobaltLaser.py +108 -0
- PYME/Acquire/Hardware/cobaltLaser561.py +94 -0
- PYME/Acquire/Hardware/comports.py +26 -0
- PYME/Acquire/Hardware/driftTrackGUI.py +488 -0
- PYME/Acquire/Hardware/driftTracking.py +595 -0
- PYME/Acquire/Hardware/fakeShutters.py +52 -0
- PYME/Acquire/Hardware/focusKeys.py +204 -0
- PYME/Acquire/Hardware/focus_locks/__init__.py +0 -0
- PYME/Acquire/Hardware/focus_locks/reflection_focus_lock.py +684 -0
- PYME/Acquire/Hardware/frZStage.py +117 -0
- PYME/Acquire/Hardware/fw102.py +38 -0
- PYME/Acquire/Hardware/ids_peak_cam.py +561 -0
- PYME/Acquire/Hardware/ioslave.py +305 -0
- PYME/Acquire/Hardware/lasers.py +292 -0
- PYME/Acquire/Hardware/matchboxLaser.py +58 -0
- PYME/Acquire/Hardware/microscope_adapter.py +104 -0
- PYME/Acquire/Hardware/mpd_picosecond_delayer.py +395 -0
- PYME/Acquire/Hardware/multiview.py +287 -0
- PYME/Acquire/Hardware/olympusix81.py +59 -0
- PYME/Acquire/Hardware/pco/__init__.py +0 -0
- PYME/Acquire/Hardware/pco/pco_cam.py +348 -0
- PYME/Acquire/Hardware/pco/pco_edge_42_lt.py +34 -0
- PYME/Acquire/Hardware/pco/pco_sdk.py +1645 -0
- PYME/Acquire/Hardware/pco/pco_sdk_cam.py +518 -0
- PYME/Acquire/Hardware/pco/pco_sdk_cam_control_panel.py +54 -0
- PYME/Acquire/Hardware/phoxxLaser.py +199 -0
- PYME/Acquire/Hardware/phoxxLaserOLD.py +242 -0
- PYME/Acquire/Hardware/priorLumen.py +102 -0
- PYME/Acquire/Hardware/priorarclampshutter.py +52 -0
- PYME/Acquire/Hardware/setup.py +50 -0
- PYME/Acquire/Hardware/spacenav.py +148 -0
- PYME/Acquire/Hardware/splitter.py +394 -0
- PYME/Acquire/Hardware/thorlabsPiezo.py +98 -0
- PYME/Acquire/Hardware/thorlabs_cam.py +136 -0
- PYME/Acquire/Hardware/thorlabs_mff_flipper.py +400 -0
- PYME/Acquire/Hardware/toptica_ibeam.py +51 -0
- PYME/Acquire/Hardware/uc480/AndorControlFrame.py +308 -0
- PYME/Acquire/Hardware/uc480/__init__.py +27 -0
- PYME/Acquire/Hardware/uc480/uCam480.py +695 -0
- PYME/Acquire/Hardware/uc480/uc480.py +189 -0
- PYME/Acquire/Hardware/uc480/uc480Deprecated.py +87 -0
- PYME/Acquire/Hardware/uc480/uc480_h.py +767 -0
- PYME/Acquire/Hardware/uc480/uc480_h_gen.py +62 -0
- PYME/Acquire/Hardware/uc480/ucCamControlFrame.py +83 -0
- PYME/Acquire/Hardware/ueye.py +702 -0
- PYME/Acquire/PYMEAcquire.py +186 -0
- PYME/Acquire/Protocols/DMDMFM.py +74 -0
- PYME/Acquire/Protocols/__init__.py +22 -0
- PYME/Acquire/Protocols/darkCalibrate.py +56 -0
- PYME/Acquire/Protocols/dual671_470.py +45 -0
- PYME/Acquire/Protocols/dual671_488.py +46 -0
- PYME/Acquire/Protocols/gainCal.py +53 -0
- PYME/Acquire/Protocols/htsms-cal-psf.py +32 -0
- PYME/Acquire/Protocols/htsms-cal-registration.py +52 -0
- PYME/Acquire/Protocols/htsms-flow.py +29 -0
- PYME/Acquire/Protocols/htsms-staggered.py +31 -0
- PYME/Acquire/Protocols/htsms-tile.py +68 -0
- PYME/Acquire/Protocols/htsms-two-color.py +29 -0
- PYME/Acquire/Protocols/htsms-widefield.py +32 -0
- PYME/Acquire/Protocols/paint671.py +61 -0
- PYME/Acquire/Protocols/photoconversion.py +52 -0
- PYME/Acquire/Protocols/photoconversion2.py +55 -0
- PYME/Acquire/Protocols/prebleach488.py +70 -0
- PYME/Acquire/Protocols/prebleach490.py +69 -0
- PYME/Acquire/Protocols/prebleach561.py +72 -0
- PYME/Acquire/Protocols/prebleach561NeomEos2.py +70 -0
- PYME/Acquire/Protocols/prebleach561NeomEos2ND1.py +70 -0
- PYME/Acquire/Protocols/prebleach642.py +70 -0
- PYME/Acquire/Protocols/prebleach671.py +69 -0
- PYME/Acquire/Protocols/prebleach671ND1.py +58 -0
- PYME/Acquire/Protocols/prebleach671ND2.py +57 -0
- PYME/Acquire/Protocols/prebleach671Neo.py +69 -0
- PYME/Acquire/Protocols/recover671.py +62 -0
- PYME/Acquire/Protocols/sequence642_488.py +85 -0
- PYME/Acquire/Protocols/sequence642_561.py +87 -0
- PYME/Acquire/Protocols/shiftfield.py +198 -0
- PYME/Acquire/Protocols/simul488.py +59 -0
- PYME/Acquire/Protocols/simul642.py +63 -0
- PYME/Acquire/Protocols/simul642HTSMS.py +63 -0
- PYME/Acquire/Protocols/simulPA.py +37 -0
- PYME/Acquire/Protocols/simulSIM.py +76 -0
- PYME/Acquire/Protocols/simulStep.py +62 -0
- PYME/Acquire/Protocols/spdscan.py +178 -0
- PYME/Acquire/Protocols/standard470.py +45 -0
- PYME/Acquire/Protocols/standard488.py +47 -0
- PYME/Acquire/Protocols/standard671.py +48 -0
- PYME/Acquire/Protocols/standard671_no532.py +47 -0
- PYME/Acquire/Protocols/standardArclamp.py +46 -0
- PYME/Acquire/Protocols/strip_tile.py +204 -0
- PYME/Acquire/Protocols/tile.py +204 -0
- PYME/Acquire/Protocols/tile3D.py +192 -0
- PYME/Acquire/Protocols/tile671.py +190 -0
- PYME/Acquire/Protocols/tile_triggered.py +189 -0
- PYME/Acquire/Scripts/init.py +232 -0
- PYME/Acquire/Scripts/init_N1_Ti_Exeter_ZIx.py +374 -0
- PYME/Acquire/Scripts/init_N2_Ti_Zyla_lasers.py +290 -0
- PYME/Acquire/Scripts/init_Neo.py +266 -0
- PYME/Acquire/Scripts/init_NeoSim.py +159 -0
- PYME/Acquire/Scripts/init_TIRF.py +232 -0
- PYME/Acquire/Scripts/init_TIRF_Neo.py +242 -0
- PYME/Acquire/Scripts/init_TIRF_NeoO.py +241 -0
- PYME/Acquire/Scripts/init_TIRF_onecam.py +233 -0
- PYME/Acquire/Scripts/init_Ti.py +257 -0
- PYME/Acquire/Scripts/init_UOA_n.py +256 -0
- PYME/Acquire/Scripts/init_UOA_n2.py +246 -0
- PYME/Acquire/Scripts/init_Y1.py +249 -0
- PYME/Acquire/Scripts/init_Zyla.py +260 -0
- PYME/Acquire/Scripts/init_drift_tracking.py +80 -0
- PYME/Acquire/Scripts/init_emccd_basic.py +277 -0
- PYME/Acquire/Scripts/init_htsms.py +277 -0
- PYME/Acquire/Scripts/init_htsms_focus_lock.py +132 -0
- PYME/Acquire/Scripts/init_micrpi.py +45 -0
- PYME/Acquire/Scripts/init_orca.py +70 -0
- PYME/Acquire/Scripts/init_pco.py +49 -0
- PYME/Acquire/Scripts/init_rev.py +74 -0
- PYME/Acquire/Scripts/init_sim100.py +169 -0
- PYME/Acquire/Scripts/init_sim103.py +169 -0
- PYME/Acquire/Scripts/init_sim2.py +211 -0
- PYME/Acquire/Scripts/init_sim50.py +169 -0
- PYME/Acquire/Scripts/init_sim75.py +169 -0
- PYME/Acquire/Scripts/init_sim_drift_tracking.py +166 -0
- PYME/Acquire/Scripts/init_sim_htsms.py +224 -0
- PYME/Acquire/Scripts/init_sim_htsms_n.py +233 -0
- PYME/Acquire/Scripts/init_sim_main.py +229 -0
- PYME/Acquire/Scripts/init_sim_min.py +197 -0
- PYME/Acquire/Scripts/init_sim_rem.py +176 -0
- PYME/Acquire/Scripts/init_smi1.py +110 -0
- PYME/Acquire/Scripts/init_spectro.py +78 -0
- PYME/Acquire/Scripts/init_spim.py +116 -0
- PYME/Acquire/Scripts/init_thorcam.py +62 -0
- PYME/Acquire/Scripts/init_twophoton.py +112 -0
- PYME/Acquire/Scripts/init_uc480.py +262 -0
- PYME/Acquire/Scripts/init_ueye.py +261 -0
- PYME/Acquire/SpoolController.py +958 -0
- PYME/Acquire/Utils/MultiPointScanner.py +80 -0
- PYME/Acquire/Utils/__init__.py +13 -0
- PYME/Acquire/Utils/failsafe.py +157 -0
- PYME/Acquire/Utils/fastTiler.py +153 -0
- PYME/Acquire/Utils/pointScanner.py +496 -0
- PYME/Acquire/Utils/sarcSpacing.py +86 -0
- PYME/Acquire/Utils/strip_tiler.py +93 -0
- PYME/Acquire/Utils/tiler.py +464 -0
- PYME/Acquire/Utils/vibrationAnalysis.py +65 -0
- PYME/Acquire/__init__.py +44 -0
- PYME/Acquire/acquire_client.py +90 -0
- PYME/Acquire/acquire_server.py +316 -0
- PYME/Acquire/acquirebase.py +139 -0
- PYME/Acquire/acquiremainframe.py +716 -0
- PYME/Acquire/acquirewx.py +61 -0
- PYME/Acquire/acquisition_base.py +148 -0
- PYME/Acquire/actions.py +209 -0
- PYME/Acquire/autofocus.py +54 -0
- PYME/Acquire/eventLog.py +95 -0
- PYME/Acquire/event_loop.py +119 -0
- PYME/Acquire/frameWrangler.py +530 -0
- PYME/Acquire/htsms/__init__.py +8 -0
- PYME/Acquire/htsms/rule_ui.py +970 -0
- PYME/Acquire/htsms/rule_ui_v2.py +573 -0
- PYME/Acquire/htsms/tweeter.py +222 -0
- PYME/Acquire/microscope.py +1050 -0
- PYME/Acquire/positionTracker.py +181 -0
- PYME/Acquire/protocol.py +299 -0
- PYME/Acquire/protocol_acquisition.py +404 -0
- PYME/Acquire/sampleInformation.py +591 -0
- PYME/Acquire/sampleInformationDjangoDirect.py +446 -0
- PYME/Acquire/setup.py +52 -0
- PYME/Acquire/stackSettings.py +295 -0
- PYME/Acquire/stage_leveling.py +285 -0
- PYME/Acquire/ui/AnalysisSettingsUI.py +184 -0
- PYME/Acquire/ui/HDFSpoolFrame.py +584 -0
- PYME/Acquire/ui/__init__.py +0 -0
- PYME/Acquire/ui/actionUI.py +892 -0
- PYME/Acquire/ui/focus_lock_gui.py +149 -0
- PYME/Acquire/ui/intensity_trace.py +143 -0
- PYME/Acquire/ui/intsliders.py +222 -0
- PYME/Acquire/ui/lasersliders.py +329 -0
- PYME/Acquire/ui/mpd_picosecond_delay_panel.py +69 -0
- PYME/Acquire/ui/multiview_select.py +77 -0
- PYME/Acquire/ui/positionUI.py +519 -0
- PYME/Acquire/ui/preflight.py +58 -0
- PYME/Acquire/ui/scanner_panel.py +41 -0
- PYME/Acquire/ui/selectCameraPanel.py +46 -0
- PYME/Acquire/ui/seqdialog.py +501 -0
- PYME/Acquire/ui/splashScreen.py +175 -0
- PYME/Acquire/ui/spool_panel.py +830 -0
- PYME/Acquire/ui/tile_panel.py +556 -0
- PYME/Acquire/ui/tilesettingsui.py +91 -0
- PYME/Acquire/ui/voxelSizeDialog.py +149 -0
- PYME/Acquire/webui/__init__.py +36 -0
- PYME/Acquire/webui/ipy.py +361 -0
- PYME/Acquire/webui/static/css/pyme-bootstrap.css +9908 -0
- PYME/Acquire/webui/static/css/pymeacquire.css +85 -0
- PYME/Acquire/webui/static/js/pymeacquire.js +375 -0
- PYME/Acquire/webui/static/js/pzf.js +95 -0
- PYME/Acquire/webui/templates/PYMEAcquire.html +232 -0
- PYME/Acquire/webui/templates/login.html +84 -0
- PYME/Acquire/webui/templates/xtermpage.html +106 -0
- PYME/Acquire/xyztc.py +418 -0
- PYME/Acquire/zScanner.py +287 -0
- PYME/Analysis/BleachProfile/__init__.py +26 -0
- PYME/Analysis/BleachProfile/deMod.py +91 -0
- PYME/Analysis/BleachProfile/fitRecover.py +90 -0
- PYME/Analysis/BleachProfile/intensProf.py +519 -0
- PYME/Analysis/BleachProfile/kinModels.py +507 -0
- PYME/Analysis/BleachProfile/rawIntensity.py +227 -0
- PYME/Analysis/BleachProfile/rollins.py +555 -0
- PYME/Analysis/Colocalisation/__init__.py +27 -0
- PYME/Analysis/Colocalisation/colocScaleDep.py +126 -0
- PYME/Analysis/Colocalisation/correlationCoeffs.py +198 -0
- PYME/Analysis/Colocalisation/distColoc.py +110 -0
- PYME/Analysis/Colocalisation/edtColoc.py +191 -0
- PYME/Analysis/MetaData.py +278 -0
- PYME/Analysis/PSFEst/__init__.py +27 -0
- PYME/Analysis/PSFEst/dec.py +283 -0
- PYME/Analysis/PSFEst/extractImages.py +316 -0
- PYME/Analysis/PSFEst/fit_psf_zernikes.py +194 -0
- PYME/Analysis/PSFEst/psfQuality.py +225 -0
- PYME/Analysis/PSFGen/__init__.py +40 -0
- PYME/Analysis/PSFGen/fourier.py +138 -0
- PYME/Analysis/PSFGen/fourierHNA.py +1108 -0
- PYME/Analysis/PSFGen/fourierHNA2.py +979 -0
- PYME/Analysis/PSFGen/genCRBcurves.py +185 -0
- PYME/Analysis/PSFGen/nijboer_zernike.py +79 -0
- PYME/Analysis/PSFGen/ps_app.cp39-win_amd64.dll.a +0 -0
- PYME/Analysis/PSFGen/ps_app.cp39-win_amd64.pyd +0 -0
- PYME/Analysis/PSFGen/test_ps_app.py +24 -0
- PYME/Analysis/Tracking/__init__.py +3 -0
- PYME/Analysis/Tracking/msd.py +57 -0
- PYME/Analysis/Tracking/trackUtils.py +528 -0
- PYME/Analysis/Tracking/tracking.py +152 -0
- PYME/Analysis/__init__.py +30 -0
- PYME/Analysis/_fithelpers.py +161 -0
- PYME/Analysis/angleFilter.py +287 -0
- PYME/Analysis/annealThresh.py +157 -0
- PYME/Analysis/autoencoder_classifier.py +45 -0
- PYME/Analysis/binAvg.py +144 -0
- PYME/Analysis/composite.py +183 -0
- PYME/Analysis/cramerRao.py +259 -0
- PYME/Analysis/deTile.py +441 -0
- PYME/Analysis/density_filter.py +45 -0
- PYME/Analysis/distributed_pyramid.py +426 -0
- PYME/Analysis/fiducial_matching.py +220 -0
- PYME/Analysis/gen_sCMOS_maps.py +355 -0
- PYME/Analysis/graphing_filters.py +311 -0
- PYME/Analysis/implicitFilter.py +359 -0
- PYME/Analysis/keep_pairs.py +69 -0
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- PYME/recipes/pointcloud.py +510 -0
- PYME/recipes/processing.py +2954 -0
- PYME/recipes/pyramid.py +206 -0
- PYME/recipes/recipe.py +965 -0
- PYME/recipes/recipeGui.py +1029 -0
- PYME/recipes/recipeLayout.py +499 -0
- PYME/recipes/runRecipe.py +140 -0
- PYME/recipes/setup.py +37 -0
- PYME/recipes/simulation.py +91 -0
- PYME/recipes/skfilters.py +143 -0
- PYME/recipes/surface_fitting.py +776 -0
- PYME/recipes/tablefilters.py +275 -0
- PYME/recipes/tracking.py +343 -0
- PYME/recipes/traits.py +157 -0
- PYME/recipes/vertical_recipe_display.py +373 -0
- PYME/resources/__init__.py +23 -0
- PYME/resources/config_template/distributor.yaml +14 -0
- PYME/resources/config_template/nodeserver.yaml +15 -0
- PYME/resources/icons/LUT.png +0 -0
- PYME/resources/icons/YSM_Shield.png +0 -0
- PYME/resources/icons/YSM_logo.png +0 -0
- PYME/resources/icons/arrow.png +0 -0
- PYME/resources/icons/crosshairs.png +0 -0
- PYME/resources/icons/line_select.png +0 -0
- PYME/resources/icons/logo_fmhs.png +0 -0
- PYME/resources/icons/media-playback-pause.png +0 -0
- PYME/resources/icons/media-playback-start.png +0 -0
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- PYME/resources/icons/media-skip-forward.png +0 -0
- PYME/resources/icons/mesh.png +0 -0
- PYME/resources/icons/mesh.svg +28 -0
- PYME/resources/icons/pmacquire.icns +0 -0
- PYME/resources/icons/pmacquire.ico +0 -0
- PYME/resources/icons/pmanal.icns +0 -0
- PYME/resources/icons/pmanal.ico +0 -0
- PYME/resources/icons/pmvis.icns +0 -0
- PYME/resources/icons/pmvis.ico +0 -0
- PYME/resources/icons/points.png +0 -0
- PYME/resources/icons/points.svg +16 -0
- PYME/resources/icons/pymeLogo.png +0 -0
- PYME/resources/icons/rect_select.png +0 -0
- PYME/resources/icons/squiggle_select.png +0 -0
- PYME/resources/icons/text3800.icns +0 -0
- PYME/resources/icons/text3800.ico +0 -0
- PYME/resources/icons/text3800.png +0 -0
- PYME/resources/icons/text3800.tif +0 -0
- PYME/resources/icons/text5377.icns +0 -0
- PYME/resources/icons/text5377.ico +0 -0
- PYME/resources/icons/text5377.png +0 -0
- PYME/resources/icons/tracks.png +0 -0
- PYME/resources/icons/tracks.svg +19 -0
- PYME/resources/icons/view-front.png +0 -0
- PYME/resources/icons/view-home.png +0 -0
- PYME/resources/icons/view-right.png +0 -0
- PYME/resources/icons/view-top.png +0 -0
- PYME/resources/test_datasets/README.md +8 -0
- PYME/resources/test_datasets/t_im.tif +0 -0
- PYME/resources/test_datasets/test_csv.csv +4282 -0
- PYME/resources/test_datasets/test_hdf.hdf +0 -0
- PYME/resources/web/rule_inline.html +21 -0
- PYME/resources/web/ruleserver.html +75 -0
- PYME/resources/web/static/bootstrap.min.js +7 -0
- PYME/resources/web/static/cluster.css +137 -0
- PYME/resources/web/static/css/bootstrap-theme.css +587 -0
- PYME/resources/web/static/css/bootstrap-theme.min.css +6 -0
- PYME/resources/web/static/css/bootstrap.css +6757 -0
- PYME/resources/web/static/css/bootstrap.min.css +6 -0
- PYME/resources/web/static/css/flat_design_colors_full.css +306 -0
- PYME/resources/web/static/css/recipe_editor.css +106 -0
- PYME/resources/web/static/dashboard.css +106 -0
- PYME/resources/web/static/fileselector.js +77 -0
- PYME/resources/web/static/fonts/glyphicons-halflings-regular.eot +0 -0
- PYME/resources/web/static/fonts/glyphicons-halflings-regular.svg +288 -0
- PYME/resources/web/static/fonts/glyphicons-halflings-regular.ttf +0 -0
- PYME/resources/web/static/fonts/glyphicons-halflings-regular.woff +0 -0
- PYME/resources/web/static/fonts/glyphicons-halflings-regular.woff2 +0 -0
- PYME/resources/web/static/images/osd_flat/LICENSE.txt +116 -0
- PYME/resources/web/static/images/osd_flat/README.md +9 -0
- PYME/resources/web/static/images/osd_flat/fullpage_grouphover.png +0 -0
- PYME/resources/web/static/images/osd_flat/fullpage_hover.png +0 -0
- PYME/resources/web/static/images/osd_flat/fullpage_pressed.png +0 -0
- PYME/resources/web/static/images/osd_flat/fullpage_rest.png +0 -0
- PYME/resources/web/static/images/osd_flat/home_grouphover.png +0 -0
- PYME/resources/web/static/images/osd_flat/home_hover.png +0 -0
- PYME/resources/web/static/images/osd_flat/home_pressed.png +0 -0
- PYME/resources/web/static/images/osd_flat/home_rest.png +0 -0
- PYME/resources/web/static/images/osd_flat/next_grouphover.png +0 -0
- PYME/resources/web/static/images/osd_flat/next_hover.png +0 -0
- PYME/resources/web/static/images/osd_flat/next_pressed.png +0 -0
- PYME/resources/web/static/images/osd_flat/next_rest.png +0 -0
- PYME/resources/web/static/images/osd_flat/previous_grouphover.png +0 -0
- PYME/resources/web/static/images/osd_flat/previous_hover.png +0 -0
- PYME/resources/web/static/images/osd_flat/previous_pressed.png +0 -0
- PYME/resources/web/static/images/osd_flat/previous_rest.png +0 -0
- PYME/resources/web/static/images/osd_flat/rotateleft_grouphover.png +0 -0
- PYME/resources/web/static/images/osd_flat/rotateleft_hover.png +0 -0
- PYME/resources/web/static/images/osd_flat/rotateleft_pressed.png +0 -0
- PYME/resources/web/static/images/osd_flat/rotateleft_rest.png +0 -0
- PYME/resources/web/static/images/osd_flat/rotateright_grouphover.png +0 -0
- PYME/resources/web/static/images/osd_flat/rotateright_hover.png +0 -0
- PYME/resources/web/static/images/osd_flat/rotateright_pressed.png +0 -0
- PYME/resources/web/static/images/osd_flat/rotateright_rest.png +0 -0
- PYME/resources/web/static/images/osd_flat/zoomin_grouphover.png +0 -0
- PYME/resources/web/static/images/osd_flat/zoomin_hover.png +0 -0
- PYME/resources/web/static/images/osd_flat/zoomin_pressed.png +0 -0
- PYME/resources/web/static/images/osd_flat/zoomin_rest.png +0 -0
- PYME/resources/web/static/images/osd_flat/zoomout_grouphover.png +0 -0
- PYME/resources/web/static/images/osd_flat/zoomout_hover.png +0 -0
- PYME/resources/web/static/images/osd_flat/zoomout_pressed.png +0 -0
- PYME/resources/web/static/images/osd_flat/zoomout_rest.png +0 -0
- PYME/resources/web/static/jigna-vue-bare.js +1395 -0
- PYME/resources/web/static/jquery.min.js +2 -0
- PYME/resources/web/static/jstree.min.js +6 -0
- PYME/resources/web/static/openSeadragonGL.js +102 -0
- PYME/resources/web/static/openseadragon-svg-overlay.js +103 -0
- PYME/resources/web/static/openseadragon-viewerinputhook.min.js +6 -0
- PYME/resources/web/static/openseadragon.min.js +9 -0
- PYME/resources/web/static/recipe_editor.js +119 -0
- PYME/resources/web/static/shaders/fragment/lut.glsl +20 -0
- PYME/resources/web/static/shaders/fragment/none.glsl +17 -0
- PYME/resources/web/static/shaders/fragment/outline.glsl +43 -0
- PYME/resources/web/static/shaders/fragment/rect.glsl +7 -0
- PYME/resources/web/static/shaders/fragment/sobel3.glsl +71 -0
- PYME/resources/web/static/shaders/fragment/white.glsl +4 -0
- PYME/resources/web/static/shaders/vertex/rect.glsl +22 -0
- PYME/resources/web/static/shaders/vertex/square.glsl +9 -0
- PYME/resources/web/static/utils.js +3 -0
- PYME/resources/web/static/viaWebGL.js +217 -0
- PYME/setup.py +109 -0
- PYME/setup_exe.py +57 -0
- PYME/simulation/__init__.py +0 -0
- PYME/simulation/locify.py +319 -0
- PYME/simulation/pointsets.py +279 -0
- PYME/simulation/wormlike.py +99 -0
- PYME/simulation/wormlike2.py +198 -0
- PYME/simulation/wormlike3.py +197 -0
- PYME/simulation/wormlike_curled.py +104 -0
- PYME/tileviewer/__init__.py +0 -0
- PYME/tileviewer/templates/roi_list.html +12 -0
- PYME/tileviewer/templates/tileviewer.html +247 -0
- PYME/tileviewer/tileviewer.py +207 -0
- PYME/ui/AUIFrame.py +279 -0
- PYME/ui/MetadataTree.py +469 -0
- PYME/ui/__init__.py +4 -0
- PYME/ui/about_dlg.py +29 -0
- PYME/ui/autoFoldPanel.py +643 -0
- PYME/ui/cascading_layout.py +45 -0
- PYME/ui/crop_dialog.py +145 -0
- PYME/ui/custom_traits_editors.py +508 -0
- PYME/ui/editFilterDialog.py +80 -0
- PYME/ui/editList.py +40 -0
- PYME/ui/fastGraph.py +240 -0
- PYME/ui/filterPane.py +348 -0
- PYME/ui/histLimits.py +543 -0
- PYME/ui/layerFoldPanel.py +232 -0
- PYME/ui/manualFoldPanel.py +870 -0
- PYME/ui/mytimer.py +116 -0
- PYME/ui/patch_traitsui.py +151 -0
- PYME/ui/progress.py +160 -0
- PYME/ui/recArrayView.py +145 -0
- PYME/ui/selection.py +71 -0
- PYME/ui/shell.py +37 -0
- PYME/ui/traitsui_constants.py +91 -0
- PYME/ui/wx_compat.py +43 -0
- PYME/update_version.py +159 -0
- PYME/util/__init__.py +3 -0
- PYME/util/authenticate.py +164 -0
- PYME/util/execfile.py +21 -0
- PYME/util/fProfile/__init__.py +1 -0
- PYME/util/fProfile/convertProfile.py +117 -0
- PYME/util/fProfile/fProfile.py +162 -0
- PYME/util/fProfile/html/404.html +60 -0
- PYME/util/fProfile/html/css/main.css +258 -0
- PYME/util/fProfile/html/css/normalize.css +427 -0
- PYME/util/fProfile/html/css/normalize.min.css +1 -0
- PYME/util/fProfile/html/index.html +64 -0
- PYME/util/fProfile/html/js/main.js +492 -0
- PYME/util/fProfile/html/js/plugins.js +24 -0
- PYME/util/fProfile/html/js/vendor/crossfilter.min.js +1 -0
- PYME/util/fProfile/html/js/vendor/jquery-1.11.2.min.js +4 -0
- PYME/util/fProfile/html/js/vendor/modernizr-2.8.3.min.js +4 -0
- PYME/util/fProfile/html/js/vendor/tinycolor-min.js +4 -0
- PYME/util/fProfile/viewProfile.py +30 -0
- PYME/util/install_dependencies.py +95 -0
- PYME/util/log_verbosity.py +11 -0
- PYME/util/mProfile/__init__.py +1 -0
- PYME/util/mProfile/colorize_db_t.py +297 -0
- PYME/util/mProfile/mProfile.py +164 -0
- PYME/util/mProfile/p.py +101 -0
- PYME/util/mProfile/tProfile.py +165 -0
- PYME/util/pymelauncher.py +47 -0
- PYME/util/shmarray/__init__.py +0 -0
- PYME/util/shmarray/shmTest.py +74 -0
- PYME/util/shmarray/shmarray.py +165 -0
- PYME/util/webframework.py +365 -0
- PYME/version.py +65 -0
- python_microscopy-25.6.5.dist-info/METADATA +68 -0
- python_microscopy-25.6.5.dist-info/RECORD +1277 -0
- python_microscopy-25.6.5.dist-info/WHEEL +4 -0
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# eventLogViewer.py
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# Copyright David Baddeley, 2009
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# d.baddeley@auckland.ac.nz
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#
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# This program is free software: you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation, either version 3 of the License, or
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# (at your option) any later version.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with this program. If not, see <http://www.gnu.org/licenses/>.
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#
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##################
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import wx
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import numpy as np
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import time
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import six
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from PYME.ui import wx_compat
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from PYME.Analysis.piecewiseMapping import times_to_frames, frames_to_times
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class eventLogPanel(wx.Panel):
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def __init__(self, parent, eventSource, metaData, frameRange, charts = [], size=(-1, -1), activate=False):
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self.eventSource = eventSource
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self.metaData = metaData
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self.maxRange = frameRange
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self.frameRange = frameRange
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self.SetEventSource(eventSource)
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#
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# colours = pylab.cm.gist_rainbow(np.arange(len(self.evKeyNames))/float(len(self.evKeyNames)))[:,:3]
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wx.Panel.__init__(self, parent, size=size)
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self.Bind(wx.EVT_PAINT, self.OnPaint)
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self.Bind(wx.EVT_SIZE, self.OnSize)
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def DoPaint(self, dc):
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eventTextWidth = 100
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dc.SetFont(wx.NORMAL_FONT)
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self.textHeight = textHeight
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frameLabelSize = max(dc.GetTextExtent('%3.4g' % self.frameRange[1])[0], dc.GetTextExtent('N')[0])
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tPerFrame = self.metaData.getEntry('Camera.CycleTime')
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#maxT = tPerFrame*self.frameRange[1]
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maxT = frames_to_times(self.frameRange[1], self.eventSource, self.metaData) - self.startTime
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#minT = tPerFrame*self.frameRange[0]
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minT = frames_to_times(self.frameRange[0], self.eventSource, self.metaData) - self.startTime
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timeLabelSize = max(dc.GetTextExtent('%3.4g' % maxT)[0], dc.GetTextExtent('[s]' % maxT)[0])
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#labels
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dc.DrawText('N',int( hpadding + frameLabelSize/2 - dc.GetTextExtent('N')[0]/2),int( 0))
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dc.DrawText('[s]',int( frameLabelSize + 3*hpadding + barWidth + timeLabelSize/2 - dc.GetTextExtent('[s]')[0]/2 ),int( 0))
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#dc.SetFont(wx.NORMAL_FONT)
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#bar
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#dc.SetPen(wx.GREEN_PEN)
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dc.SetBrush(wx.MEDIUM_GREY_BRUSH)
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x0 = frameLabelSize + 2*hpadding
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y0 = 2*textHeight
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dc.DrawRectangle(int(x0),int( y0),int( barWidth),int( self.Size[1] - 3*textHeight))
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if self.frameRange[0] > self.maxRange[0]:
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pl = [(x0 + 2,y0 - 3), (x0 + barWidth // 2, y0 - barWidth // 2 - 1), (x0 + barWidth - 2, y0 - 3)]
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dc.DrawPolygon(pl)
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if self.frameRange[1] < self.maxRange[1]:
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y0 = int(y0 + self.Size[1] - 3*textHeight)
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pl = [(x0 + 2,y0 + 2), (x0 + barWidth // 2, y0 + barWidth // 2), (x0 + barWidth - 2, y0 + 2)]
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dc.DrawPolygon(pl)
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#ticks
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dc.SetPen(wx.BLACK_PEN)
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##frame # ticks
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nFrames = self.frameRange[1] - self.frameRange[0]
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pixPerFrame = float(self.Size[1] - 3*textHeight)/nFrames
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pixPerS = pixPerFrame/tPerFrame
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self.pixPerFrame = pixPerFrame
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nTicksTarget = self.Size[1]/(7.5*textHeight)
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tickSpacing = nFrames/nTicksTarget
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#round to 1sf
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tickSpacing = round(tickSpacing/(10**np.floor(np.log10(tickSpacing))))*(10**np.floor(np.log10(tickSpacing)))
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140
|
+
tickStart = np.ceil(self.frameRange[0]/tickSpacing)*tickSpacing
|
|
141
|
+
ticks = np.arange(tickStart, self.frameRange[1]+.01, tickSpacing)
|
|
142
|
+
tickTimes = frames_to_times(ticks, self.eventSource, self.metaData) - self.startTime
|
|
143
|
+
|
|
144
|
+
for t, tt in zip(ticks, tickTimes):
|
|
145
|
+
#y = (t -self.frameRange[0])*pixPerFrame + 2*textHeight
|
|
146
|
+
y = (tt -minT)*pixPerS + 2*textHeight
|
|
147
|
+
dc.DrawText('%3.4g' % t,int( hpadding),int( y - 0.5*textHeight))
|
|
148
|
+
dc.DrawLine(int(frameLabelSize + 2*hpadding - tickSize),int( y),int( frameLabelSize + 2*hpadding),int( y))
|
|
149
|
+
|
|
150
|
+
|
|
151
|
+
# #### Time # ticks
|
|
152
|
+
tickSpacingTime = tPerFrame * tickSpacing
|
|
153
|
+
#round to 1sf
|
|
154
|
+
tickSpacingTime = round(tickSpacingTime/(10**np.floor(np.log10(tickSpacingTime))))*(10**np.floor(np.log10(tickSpacingTime)))
|
|
155
|
+
tickStartTime = np.ceil(minT/tickSpacingTime)*tickSpacingTime
|
|
156
|
+
ticks = np.arange(tickStartTime, maxT+.0001, tickSpacingTime)
|
|
157
|
+
#
|
|
158
|
+
# #print minT, maxT, tickSpacingTime
|
|
159
|
+
#
|
|
160
|
+
for t in ticks:
|
|
161
|
+
y = (t -minT)*pixPerS + 2*textHeight
|
|
162
|
+
dc.DrawText('%2.4g' % t,int( frameLabelSize + 3*hpadding + barWidth),int( y - 0.5*textHeight))
|
|
163
|
+
dc.DrawLine(int(frameLabelSize + 2*hpadding + barWidth),int( y),int( frameLabelSize + 2*hpadding + barWidth + tickSize),int( y))
|
|
164
|
+
|
|
165
|
+
tTickPositions = (ticks -minT)*pixPerS + 2*textHeight
|
|
166
|
+
|
|
167
|
+
|
|
168
|
+
startT = self.metaData.getEntry('StartTime')
|
|
169
|
+
|
|
170
|
+
x0 = frameLabelSize + 2*hpadding
|
|
171
|
+
x1 = x0 + 3*hpadding + barWidth + timeLabelSize
|
|
172
|
+
x2 = x1 + hpadding
|
|
173
|
+
x3 = x2 + hpadding
|
|
174
|
+
|
|
175
|
+
numSkipped = 0
|
|
176
|
+
|
|
177
|
+
for e in self.eventSource:
|
|
178
|
+
t = e['Time'] - startT
|
|
179
|
+
if t > minT and t < maxT:
|
|
180
|
+
y = (t -minT)*pixPerS + 2*textHeight
|
|
181
|
+
|
|
182
|
+
event_name = six.ensure_str(e['EventName'])
|
|
183
|
+
|
|
184
|
+
dc.SetPen(wx.Pen(self.lineColours[event_name]))
|
|
185
|
+
dc.SetTextForeground(self.lineColours[event_name])
|
|
186
|
+
|
|
187
|
+
if y < (lastEvY + 2) or (numSkipped > 0 and y < (lastEvY + 1.2*textHeight)): #no room - skip
|
|
188
|
+
if ((tTickPositions - y)**2).min() < (0.3*textHeight)**2:
|
|
189
|
+
#line will occlude time text, draw as two segments
|
|
190
|
+
dc.DrawLine(int(x0),int( y),int( x0 + barWidth),int( y))
|
|
191
|
+
dc.DrawLine(int(x1 - 2*hpadding),int( y),int( x1 - 2*(1 + 1*numSkipped)),int( y))
|
|
192
|
+
else:
|
|
193
|
+
dc.DrawLine(int(x0),int( y),int( x1 - 2*(1 + 1*numSkipped)),int( y))
|
|
194
|
+
|
|
195
|
+
dc.DrawLine(int(x1- 2*(1 + 1*numSkipped)),int( y),int( x1- 2*(1 + 1*numSkipped)),int( lastEvY + 0.5*textHeight + 1 + 2*numSkipped))
|
|
196
|
+
dc.DrawLine(int(x1- 2*(1 + 1*numSkipped)),int(lastEvY + 0.5*textHeight + 1 + 2*numSkipped),int( x3 + 200),int( lastEvY+ 0.5*textHeight + 1 + 2*numSkipped))
|
|
197
|
+
numSkipped +=1
|
|
198
|
+
else: #Don't skip - draw nomally
|
|
199
|
+
if ((tTickPositions - y)**2).min() < (0.3*textHeight)**2:
|
|
200
|
+
#line will occlude time text, draw as two segments
|
|
201
|
+
dc.DrawLine(int(x0),int( y),int( x0 + barWidth),int( y))
|
|
202
|
+
dc.DrawLine(int(x1 - 2*hpadding),int( y),int( x1),int( y))
|
|
203
|
+
else:
|
|
204
|
+
dc.DrawLine(int(x0),int( y),int( x1),int( y))
|
|
205
|
+
|
|
206
|
+
if y < (lastEvY + 1.2*textHeight):
|
|
207
|
+
#label will overlap with previous - move down
|
|
208
|
+
dc.DrawLine(int(x1),int( y),int( x1),int( lastEvY + 1.2*textHeight))
|
|
209
|
+
y = lastEvY + 1.2*textHeight
|
|
210
|
+
|
|
211
|
+
dc.DrawLine(int(x1),int( y),int( x2),int( y))
|
|
212
|
+
eventText = '%6.2fs\t' % t + '%(EventName)s\t%(EventDescr)s' % e
|
|
213
|
+
|
|
214
|
+
etw = dc.GetTextExtent(eventText)[0]
|
|
215
|
+
|
|
216
|
+
etwMax = self.Size[0] - (x3 + 2*hpadding + 80*len(self.charts))
|
|
217
|
+
|
|
218
|
+
if etw > etwMax:
|
|
219
|
+
newLen = int((float(etwMax)/etw)*len(eventText))
|
|
220
|
+
eventText = eventText[:(newLen - 4)] + ' ...'
|
|
221
|
+
|
|
222
|
+
eventTextWidth = max(eventTextWidth, dc.GetTextExtent(eventText)[0])
|
|
223
|
+
dc.DrawText(eventText,int( x3),int( y - 0.5*textHeight))
|
|
224
|
+
lastEvY = y
|
|
225
|
+
numSkipped = 0
|
|
226
|
+
|
|
227
|
+
dc.SetTextForeground(wx.BLACK)
|
|
228
|
+
dc.SetPen(wx.BLACK_PEN)
|
|
229
|
+
|
|
230
|
+
|
|
231
|
+
x4 = x3 + eventTextWidth + 2*hpadding
|
|
232
|
+
chartWidth = (self.Size[0] - x4)/max(len(self.charts), 1) - 2*hpadding
|
|
233
|
+
|
|
234
|
+
for c in self.charts:
|
|
235
|
+
cname = c[0]
|
|
236
|
+
cmapping = c[1]
|
|
237
|
+
sourceEv = six.ensure_str(c[2]) # sourceEv may sometimes be `bytes`
|
|
238
|
+
|
|
239
|
+
dc.SetTextForeground(self.lineColours[sourceEv])
|
|
240
|
+
|
|
241
|
+
dc.DrawText(cname,int( x4 + chartWidth/2 - dc.GetTextExtent(cname)[0]/2),int( 0))
|
|
242
|
+
|
|
243
|
+
xv = np.array([self.frameRange[0],] + [x for x in cmapping.xvals if x > self.frameRange[0] and x < self.frameRange[1]] + [self.frameRange[1],])
|
|
244
|
+
vv = cmapping(xv)
|
|
245
|
+
|
|
246
|
+
vmin = vv.min()
|
|
247
|
+
vmax = vv.max()
|
|
248
|
+
if vmax == vmin:
|
|
249
|
+
vsc = 0
|
|
250
|
+
else:
|
|
251
|
+
vsc = chartWidth/float(vmax - vmin)
|
|
252
|
+
|
|
253
|
+
dc.DrawText('%3.2f'% vmin,int( x4 - dc.GetTextExtent('%3.2f'% vmin)[0]/2),int( 1*textHeight))
|
|
254
|
+
dc.DrawText('%3.2f'% vmax,int( x4 + chartWidth - dc.GetTextExtent('%3.2f'% vmax)[0]/2),int( 1*textHeight))
|
|
255
|
+
|
|
256
|
+
dc.SetPen(wx.BLACK_PEN)
|
|
257
|
+
dc.DrawLine(int(x4),int( 2*textHeight),int( x4),int( 2*textHeight + tickSize))
|
|
258
|
+
dc.DrawLine(int(x4 + chartWidth),int( 2*textHeight),int( x4 + chartWidth),int( 2*textHeight + tickSize))
|
|
259
|
+
|
|
260
|
+
#dc.SetPen(wx.Pen(wx.BLUE, 2))
|
|
261
|
+
dc.SetPen(wx.Pen(self.lineColours[sourceEv],2))
|
|
262
|
+
|
|
263
|
+
x_0 = xv[0]
|
|
264
|
+
v_0 = vv[0]
|
|
265
|
+
|
|
266
|
+
yp_ = (x_0 -self.frameRange[0])*pixPerFrame + 2*textHeight
|
|
267
|
+
xp_ = x4 + (v_0 - vmin)*vsc
|
|
268
|
+
|
|
269
|
+
for x,v in zip(xv[1:-1], vv[1:-1]):
|
|
270
|
+
yp = (x -self.frameRange[0])*pixPerFrame + 2*textHeight
|
|
271
|
+
xp = x4 + (v - vmin)*vsc
|
|
272
|
+
dc.DrawLine(int(xp_),int( yp_),int( xp_),int( yp))
|
|
273
|
+
dc.DrawLine(int(xp_),int( yp),int( xp),int( yp))
|
|
274
|
+
xp_ = xp
|
|
275
|
+
yp_ = yp
|
|
276
|
+
|
|
277
|
+
yp = (xv[-1] -self.frameRange[0])*pixPerFrame + 2*textHeight
|
|
278
|
+
xp = x4 + (vv[-1] - vmin)*vsc
|
|
279
|
+
dc.DrawLine(int(xp_),int( yp_),int( xp_),int( yp))
|
|
280
|
+
|
|
281
|
+
x4 = x4 + chartWidth + hpadding
|
|
282
|
+
|
|
283
|
+
|
|
284
|
+
#pm = piecewiseMapping.GeneratePMFromEventList(elv.eventSource, md.Camera.CycleTime*1e-3, md.StartTime, md.Protocol.PiezoStartPos)
|
|
285
|
+
# if self.dragging == 'upper':
|
|
286
|
+
# dc.SetPen(wx.Pen(wx.GREEN, 2))
|
|
287
|
+
# else:
|
|
288
|
+
# dc.SetPen(wx.Pen(wx.RED, 2))
|
|
289
|
+
|
|
290
|
+
dc.SetTextForeground(wx.BLACK)
|
|
291
|
+
|
|
292
|
+
dc.SetPen(wx.NullPen)
|
|
293
|
+
dc.SetBrush(wx.NullBrush)
|
|
294
|
+
dc.SetFont(wx.NullFont)
|
|
295
|
+
|
|
296
|
+
def OnPaint(self,event):
|
|
297
|
+
if not (self.active and self.IsShownOnScreen()):
|
|
298
|
+
return
|
|
299
|
+
|
|
300
|
+
DC = wx.PaintDC(self)
|
|
301
|
+
#self.PrepareDC(DC)
|
|
302
|
+
|
|
303
|
+
s = self.GetVirtualSize()
|
|
304
|
+
MemBitmap = wx_compat.EmptyBitmap(s.GetWidth(), s.GetHeight())
|
|
305
|
+
#del DC
|
|
306
|
+
MemDC = wx.MemoryDC()
|
|
307
|
+
OldBitmap = MemDC.SelectObject(MemBitmap)
|
|
308
|
+
try:
|
|
309
|
+
#DC.BeginDrawing()
|
|
310
|
+
|
|
311
|
+
self.DoPaint(MemDC);
|
|
312
|
+
|
|
313
|
+
DC.Blit(0, 0, s.GetWidth(), s.GetHeight(), MemDC, 0, 0)
|
|
314
|
+
#DC.EndDrawing()
|
|
315
|
+
finally:
|
|
316
|
+
|
|
317
|
+
del MemDC
|
|
318
|
+
del MemBitmap
|
|
319
|
+
|
|
320
|
+
def OnSize(self,event):
|
|
321
|
+
self.Refresh()
|
|
322
|
+
self.Update()
|
|
323
|
+
|
|
324
|
+
def OnWheel(self, event):
|
|
325
|
+
rot = event.GetWheelRotation()
|
|
326
|
+
|
|
327
|
+
#get translated coordinates
|
|
328
|
+
#xp = event.GetX()*view_size_x/self.Size[0] + self.xmin
|
|
329
|
+
|
|
330
|
+
# keep current yp whilst zooming
|
|
331
|
+
t = time.time()
|
|
332
|
+
if (t - self._last_scroll) > 1:
|
|
333
|
+
yp = self.frameRange[0] + (float(event.GetY() - 2*self.textHeight)/self.pixPerFrame)
|
|
334
|
+
self._last_yp = yp
|
|
335
|
+
else:
|
|
336
|
+
yp = self._last_yp
|
|
337
|
+
|
|
338
|
+
self._last_scroll = t
|
|
339
|
+
#print yp
|
|
340
|
+
|
|
341
|
+
nFrames = self.frameRange[1] - self.frameRange[0]
|
|
342
|
+
|
|
343
|
+
if rot < 0: #zoom out
|
|
344
|
+
nFrames *= 1.2
|
|
345
|
+
nFrames = min(nFrames, self.maxRange[1] - self.maxRange[0])
|
|
346
|
+
elif rot > 0 : #zoom in
|
|
347
|
+
if nFrames <= 2:
|
|
348
|
+
#zoomed in as far as we can go, don't do anything
|
|
349
|
+
return
|
|
350
|
+
nFrames *= 0.8
|
|
351
|
+
nFrames = max(nFrames, 2)
|
|
352
|
+
#yp = np.clip(yp, self.maxRange[0] + 0.5 * nFrames, self.maxRange[1] - 0.5 * nFrames)
|
|
353
|
+
nMin = min(max(yp - 0.5 * nFrames, self.maxRange[0]), max(self.maxRange[1] -nFrames, self.maxRange[0]))
|
|
354
|
+
nMax = nMin + nFrames#yp + 0.5 * nFrames
|
|
355
|
+
|
|
356
|
+
#nMin = max(nMin, self.maxRange[0])
|
|
357
|
+
#nMax = min(nMax, self.maxRange[1])
|
|
358
|
+
|
|
359
|
+
if nMin == self.maxRange[0] and nMax == self.maxRange[1]:
|
|
360
|
+
self.autoRange = True
|
|
361
|
+
else:
|
|
362
|
+
self.autoRange = False
|
|
363
|
+
|
|
364
|
+
self.frameRange = (nMin, nMax)
|
|
365
|
+
self.Refresh()
|
|
366
|
+
self.Update()
|
|
367
|
+
|
|
368
|
+
def SetEventSource(self, eventSource):
|
|
369
|
+
self.eventSource = eventSource
|
|
370
|
+
self.evKeyNames = set()
|
|
371
|
+
for e in self.eventSource:
|
|
372
|
+
self.evKeyNames.add(six.ensure_str(e['EventName']))
|
|
373
|
+
|
|
374
|
+
colours = 0.9*cm.gist_rainbow(np.arange(len(self.evKeyNames))/float(len(self.evKeyNames)))[:,:3]
|
|
375
|
+
|
|
376
|
+
self.lineColours = {}
|
|
377
|
+
for k, c in zip(self.evKeyNames, colours):
|
|
378
|
+
self.lineColours[k] = wx.Colour(*[int(v) for v in (255*c)])
|
|
379
|
+
|
|
380
|
+
#print(self.lineColours)
|
|
381
|
+
|
|
382
|
+
if self.initialised:
|
|
383
|
+
self.Refresh()
|
|
384
|
+
self.Update()
|
|
385
|
+
|
|
386
|
+
def SetRange(self, range):
|
|
387
|
+
self.maxRange = range
|
|
388
|
+
if self.autoRange:
|
|
389
|
+
self.frameRange = range
|
|
390
|
+
self.Refresh()
|
|
391
|
+
self.Update()
|
|
392
|
+
|
|
393
|
+
def SetCharts(self, charts):
|
|
394
|
+
self.charts = charts
|
|
395
|
+
self.Refresh()
|
|
396
|
+
self.Update()
|
|
397
|
+
|
|
398
|
+
class eventLogTPanel(wx.Panel):
|
|
399
|
+
def __init__(self, parent, eventSource, metaData, timeRange, charts = [], size=(-1, -1), activate=False):
|
|
400
|
+
self.eventSource = eventSource
|
|
401
|
+
self.metaData = metaData
|
|
402
|
+
self.maxRange = list(timeRange)
|
|
403
|
+
self.timeRange = timeRange
|
|
404
|
+
self.charts = charts
|
|
405
|
+
|
|
406
|
+
self.autoRange = True
|
|
407
|
+
|
|
408
|
+
self.initialised = False
|
|
409
|
+
self.startTime = self.metaData.getEntry('StartTime')
|
|
410
|
+
|
|
411
|
+
self.SetEventSource(eventSource)
|
|
412
|
+
|
|
413
|
+
self._last_scroll = 0
|
|
414
|
+
self._last_yp = 0
|
|
415
|
+
self._min_time_span = .01
|
|
416
|
+
|
|
417
|
+
# self.evKeyNames = set()
|
|
418
|
+
# for e in self.eventSource:
|
|
419
|
+
# self.evKeyNames.add(e['EventName'])
|
|
420
|
+
#
|
|
421
|
+
# colours = pylab.cm.gist_rainbow(np.arange(len(self.evKeyNames))/float(len(self.evKeyNames)))[:,:3]
|
|
422
|
+
#
|
|
423
|
+
# self.lineColours = {}
|
|
424
|
+
# for k, c in zip(self.evKeyNames, colours):
|
|
425
|
+
# self.lineColours[k] = c
|
|
426
|
+
|
|
427
|
+
wx.Panel.__init__(self, parent, size=size)
|
|
428
|
+
|
|
429
|
+
self.Bind(wx.EVT_PAINT, self.OnPaint)
|
|
430
|
+
self.Bind(wx.EVT_SIZE, self.OnSize)
|
|
431
|
+
self.Bind(wx.EVT_MOUSEWHEEL, self.OnWheel)
|
|
432
|
+
|
|
433
|
+
self.initialised = True
|
|
434
|
+
self.active = activate
|
|
435
|
+
|
|
436
|
+
def activate(self):
|
|
437
|
+
self.active = True
|
|
438
|
+
|
|
439
|
+
def DoPaint(self, dc):
|
|
440
|
+
dc.Clear()
|
|
441
|
+
|
|
442
|
+
hpadding = 10
|
|
443
|
+
barWidth = 20
|
|
444
|
+
tickSize = 5
|
|
445
|
+
|
|
446
|
+
lastEvY = 0
|
|
447
|
+
|
|
448
|
+
eventTextWidth = 100
|
|
449
|
+
|
|
450
|
+
dc.SetFont(wx.NORMAL_FONT)
|
|
451
|
+
textHeight = dc.GetTextExtent('test')[1]
|
|
452
|
+
|
|
453
|
+
self.textHeight = textHeight
|
|
454
|
+
|
|
455
|
+
timeLabelSize = max(dc.GetTextExtent('%3.4g' % self.timeRange[1])[0], dc.GetTextExtent('N')[0])
|
|
456
|
+
|
|
457
|
+
#tPerFrame = self.metaData.getEntry('Camera.CycleTime')
|
|
458
|
+
minT, maxT = self.timeRange
|
|
459
|
+
|
|
460
|
+
pixPerS = float(self.Size[1] - 3*textHeight)/(maxT - minT)
|
|
461
|
+
self.pixPerS = pixPerS
|
|
462
|
+
|
|
463
|
+
maxF = times_to_frames(maxT + self.startTime, self.eventSource, self.metaData) #- self.startTime
|
|
464
|
+
minF = times_to_frames(minT + self.startTime, self.eventSource, self.metaData) #- self.startTime
|
|
465
|
+
|
|
466
|
+
#print minF, maxF
|
|
467
|
+
|
|
468
|
+
if (maxF < minF) < 30: #show when camera was actually recording
|
|
469
|
+
fTimes = frames_to_times(np.arange(minF, maxF + .1), self.eventSource, self.metaData) - self.startTime
|
|
470
|
+
tPerFrame = self.metaData.getEntry('Camera.CycleTime')
|
|
471
|
+
|
|
472
|
+
old_pen = dc.GetPen()
|
|
473
|
+
dc.SetPen(wx.TRANSPARENT_PEN)
|
|
474
|
+
dc.SetBrush(wx.TheBrushList.FindOrCreateBrush(wx.Colour(220, 255, 200)))
|
|
475
|
+
|
|
476
|
+
for ft in fTimes:
|
|
477
|
+
y0 = (ft -minT)*pixPerS + 2*textHeight
|
|
478
|
+
bh = tPerFrame*pixPerS
|
|
479
|
+
|
|
480
|
+
dc.DrawRectangle(int(0),int( y0),int( self.Size[0]),int( bh))
|
|
481
|
+
|
|
482
|
+
dc.SetPen(old_pen)
|
|
483
|
+
|
|
484
|
+
|
|
485
|
+
|
|
486
|
+
frameLabelSize = max(dc.GetTextExtent('%3.4g' % maxF)[0], dc.GetTextExtent('[s]' % maxF)[0])
|
|
487
|
+
|
|
488
|
+
#labels
|
|
489
|
+
dc.DrawText('N',int( hpadding + frameLabelSize/2 - dc.GetTextExtent('N')[0]/2),int( 0))
|
|
490
|
+
dc.DrawText('[s]',int( frameLabelSize + 3*hpadding + barWidth + timeLabelSize/2 - dc.GetTextExtent('[s]')[0]/2 ),int( 0))
|
|
491
|
+
|
|
492
|
+
dc.SetBrush(wx.MEDIUM_GREY_BRUSH)
|
|
493
|
+
|
|
494
|
+
x0 = frameLabelSize + 2*hpadding
|
|
495
|
+
y0 = 2*textHeight
|
|
496
|
+
dc.DrawRectangle(int(x0),int( y0),int( barWidth),int( self.Size[1] - 3*textHeight))
|
|
497
|
+
|
|
498
|
+
if self.timeRange[0] > self.maxRange[0]:
|
|
499
|
+
pl = [(x0 + 2,y0 - 3), (x0 + barWidth // 2, y0 - barWidth // 2 - 1), (x0 + barWidth - 2, y0 - 3)]
|
|
500
|
+
dc.DrawPolygon(pl)
|
|
501
|
+
|
|
502
|
+
if self.timeRange[1] < self.maxRange[1]:
|
|
503
|
+
y0 = y0 + self.Size[1] - 3*textHeight
|
|
504
|
+
pl = [(x0 + 2,y0 + 2), (x0 + barWidth // 2, y0 + barWidth // 2), (x0 + barWidth - 2, y0 + 2)]
|
|
505
|
+
dc.DrawPolygon(pl)
|
|
506
|
+
|
|
507
|
+
#ticks
|
|
508
|
+
dc.SetPen(wx.BLACK_PEN)
|
|
509
|
+
|
|
510
|
+
##frame # ticks
|
|
511
|
+
nFrames = maxF - minF
|
|
512
|
+
|
|
513
|
+
#pixPerS = pixPerFrame/tPerFrame
|
|
514
|
+
|
|
515
|
+
#self.pixPerFrame = pixPerFrame
|
|
516
|
+
|
|
517
|
+
nTicksTarget = self.Size[1]/(5.5*textHeight)
|
|
518
|
+
tickSpacing = max(np.floor(nFrames/nTicksTarget), 1)
|
|
519
|
+
#round to 1sf
|
|
520
|
+
#tickSpacing = round(tickSpacing/(10**np.floor(np.log10(tickSpacing))))*(10**np.floor(np.log10(tickSpacing)))
|
|
521
|
+
tickStart = np.ceil(minF/tickSpacing)*tickSpacing
|
|
522
|
+
#print(tickStart, maxF+.01, tickSpacing)
|
|
523
|
+
ticks = np.arange(tickStart, maxF+.01, tickSpacing)
|
|
524
|
+
tickTimes = frames_to_times(ticks, self.eventSource, self.metaData) - self.startTime
|
|
525
|
+
|
|
526
|
+
#print minT, maxT,nFrames, nTicksTarget, tickStart, tickSpacing
|
|
527
|
+
|
|
528
|
+
for t, tt in zip(ticks, tickTimes):
|
|
529
|
+
#y = (t -self.frameRange[0])*pixPerFrame + 2*textHeight
|
|
530
|
+
y = (tt -minT)*pixPerS + 2*textHeight
|
|
531
|
+
#print t, hpadding, y - 0.5*textHeight
|
|
532
|
+
dc.DrawText('%3.4g' % t,int( hpadding),int( y - 0.5*textHeight))
|
|
533
|
+
dc.DrawLine(int(frameLabelSize + 2*hpadding - tickSize),int( y),int( frameLabelSize + 2*hpadding),int( y))
|
|
534
|
+
|
|
535
|
+
|
|
536
|
+
# #### Time # ticks
|
|
537
|
+
tickSpacingTime = (maxT - minT)/nTicksTarget
|
|
538
|
+
#round to 1sf
|
|
539
|
+
tickSpacingTime = round(tickSpacingTime/(10**np.floor(np.log10(tickSpacingTime))))*(10**np.floor(np.log10(tickSpacingTime)))
|
|
540
|
+
tickStartTime = np.ceil(minT/tickSpacingTime)*tickSpacingTime
|
|
541
|
+
ticks = np.arange(tickStartTime, maxT+.0001, tickSpacingTime)
|
|
542
|
+
#
|
|
543
|
+
#print minT, maxT, tickSpacingTime
|
|
544
|
+
#
|
|
545
|
+
for t in ticks:
|
|
546
|
+
y = (t -minT)*pixPerS + 2*textHeight
|
|
547
|
+
dc.DrawText('%2.4g' % t,int( frameLabelSize + 3*hpadding + barWidth),int( y - 0.5*textHeight))
|
|
548
|
+
dc.DrawLine(int(frameLabelSize + 2*hpadding + barWidth),int( y),int( frameLabelSize + 2*hpadding + barWidth + tickSize),int( y))
|
|
549
|
+
|
|
550
|
+
tTickPositions = (ticks -minT)*pixPerS + 2*textHeight
|
|
551
|
+
|
|
552
|
+
|
|
553
|
+
startT = self.metaData.getEntry('StartTime')
|
|
554
|
+
|
|
555
|
+
x0 = frameLabelSize + 2*hpadding
|
|
556
|
+
x1 = x0 + 3*hpadding + barWidth + timeLabelSize
|
|
557
|
+
x2 = x1 + hpadding
|
|
558
|
+
x3 = x2 + hpadding
|
|
559
|
+
|
|
560
|
+
numSkipped = 0
|
|
561
|
+
|
|
562
|
+
evts = self.eventSource[(self.eventSource['Time'] > (minT + self.startTime))*(self.eventSource['Time'] < (maxT + self.startTime))]
|
|
563
|
+
ets = evts['Time'] - self.startTime
|
|
564
|
+
eys = (ets -minT)*pixPerS + 2*textHeight
|
|
565
|
+
dys = np.hstack([np.diff(eys), [100]])
|
|
566
|
+
|
|
567
|
+
#special hack for co-incident events
|
|
568
|
+
for i in range(len(dys)):
|
|
569
|
+
if dys[i] == 0:
|
|
570
|
+
j = i+1
|
|
571
|
+
while dys[j] == 0: #find the next non-zero step
|
|
572
|
+
j += 1
|
|
573
|
+
|
|
574
|
+
if dys[j] > 1.2*textHeight: #we have room to expand
|
|
575
|
+
dys[i] += 1.2*textHeight
|
|
576
|
+
dys[j] -= 1.2*textHeight
|
|
577
|
+
|
|
578
|
+
lastLineY = 0
|
|
579
|
+
|
|
580
|
+
for i, e in enumerate(evts):
|
|
581
|
+
y = eys[i]
|
|
582
|
+
t = ets[i]
|
|
583
|
+
#print y
|
|
584
|
+
event_name = six.ensure_str(e['EventName'])
|
|
585
|
+
|
|
586
|
+
dc.SetPen(wx.Pen(self.lineColours[event_name]))
|
|
587
|
+
dc.SetTextForeground(self.lineColours[event_name])
|
|
588
|
+
|
|
589
|
+
if (y < (lastLineY + 2) or (numSkipped > 0 and y < (lastLineY + 1.2*textHeight))) and dys[i] < (1.2*textHeight + 2*numSkipped): #no room - skip
|
|
590
|
+
if ((tTickPositions - y)**2).min() < (0.3*textHeight)**2:
|
|
591
|
+
dc.DrawLine(int(x0),int( y),int( x0 + barWidth),int( y))
|
|
592
|
+
dc.DrawLine(int(x1 - 2*hpadding),int( y),int( x1 - 2*(1 + 1*numSkipped)),int( y))
|
|
593
|
+
else:
|
|
594
|
+
dc.DrawLine(int(x0),int( y),int( x1 - 2*(1 + 1*numSkipped)),int( y))
|
|
595
|
+
dc.DrawLine(int(x1- 2*(1 + 1*numSkipped)),int( y),int( x1- 2*(1 + 1*numSkipped)),int( lastEvY + 0.5*textHeight + 1 + 2*numSkipped))
|
|
596
|
+
dc.DrawLine(int(x1- 2*(1 + 1*numSkipped)),int(lastEvY + 0.5*textHeight + 1 + 2*numSkipped),int( x3 + 200),int( lastEvY+ 0.5*textHeight + 1 + 2*numSkipped))
|
|
597
|
+
numSkipped +=1
|
|
598
|
+
lastLineY += 2
|
|
599
|
+
else:
|
|
600
|
+
if ((tTickPositions - y)**2).min() < (0.3*textHeight)**2:
|
|
601
|
+
dc.DrawLine(int(x0),int( y),int( x0 + barWidth),int( y))
|
|
602
|
+
dc.DrawLine(int(x1 - 2*hpadding),int( y),int( x1- 2*(1 + 1*numSkipped)),int( y))
|
|
603
|
+
else:
|
|
604
|
+
dc.DrawLine(int(x0),int( y),int( x1- 2*(1 + 1*numSkipped)),int( y))
|
|
605
|
+
if y < (lastLineY + 1.2*textHeight):
|
|
606
|
+
dc.DrawLine(int(x1- 2*(1 + 1*numSkipped)),int( y),int( x1- 2*(1 + 1*numSkipped)),int( lastLineY + 1.2*textHeight))
|
|
607
|
+
y = lastLineY + 1.2*textHeight
|
|
608
|
+
|
|
609
|
+
dc.DrawLine(int(x1- 2*(1 + 1*numSkipped)),int( y),int( x2),int( y))
|
|
610
|
+
eventText = '%6.2fs\t' % t + '%(EventName)s\t%(EventDescr)s' % e
|
|
611
|
+
|
|
612
|
+
etw = dc.GetTextExtent(eventText)[0]
|
|
613
|
+
|
|
614
|
+
etwMax = self.Size[0] - (x3 + 2*hpadding + 80*len(self.charts))
|
|
615
|
+
|
|
616
|
+
if etw > etwMax:
|
|
617
|
+
newLen = int((float(etwMax)/etw)*len(eventText))
|
|
618
|
+
eventText = eventText[:(newLen - 4)] + ' ...'
|
|
619
|
+
|
|
620
|
+
eventTextWidth = max(eventTextWidth, dc.GetTextExtent(eventText)[0])
|
|
621
|
+
dc.DrawText(eventText,int( x3),int( y - 0.5*textHeight))
|
|
622
|
+
lastEvY = y
|
|
623
|
+
lastLineY = y
|
|
624
|
+
numSkipped = 0
|
|
625
|
+
|
|
626
|
+
dc.SetTextForeground(wx.BLACK)
|
|
627
|
+
dc.SetPen(wx.BLACK_PEN)
|
|
628
|
+
|
|
629
|
+
|
|
630
|
+
x4 = x3 + eventTextWidth + 2*hpadding
|
|
631
|
+
chartWidth = (self.Size[0] - x4)/max(len(self.charts), 1) - 2*hpadding
|
|
632
|
+
|
|
633
|
+
for c in self.charts:
|
|
634
|
+
cname = c[0]
|
|
635
|
+
cmapping = c[1]
|
|
636
|
+
sourceEv = six.ensure_str(c[2])
|
|
637
|
+
|
|
638
|
+
dc.SetTextForeground(self.lineColours[six.ensure_str(sourceEv)])
|
|
639
|
+
|
|
640
|
+
dc.DrawText(cname,int( x4 + chartWidth/2 - dc.GetTextExtent(cname)[0]/2),int( 0))
|
|
641
|
+
|
|
642
|
+
xv = np.array([max(minF, 0),] + [x for x in cmapping.xvals if x > minF and x < maxF] + [maxF,])
|
|
643
|
+
vv = cmapping(xv)
|
|
644
|
+
|
|
645
|
+
vmin = vv.min()
|
|
646
|
+
vmax = vv.max()
|
|
647
|
+
|
|
648
|
+
ml = dc.GetTextExtent('%3.2f'% vmin)[0]/2
|
|
649
|
+
mr = dc.GetTextExtent('%3.2f'% vmax)[0]/2
|
|
650
|
+
|
|
651
|
+
chartWidthInternal = chartWidth - ml - mr
|
|
652
|
+
|
|
653
|
+
if vmax == vmin:
|
|
654
|
+
vsc = 0
|
|
655
|
+
else:
|
|
656
|
+
vsc = chartWidthInternal/float(vmax - vmin)
|
|
657
|
+
|
|
658
|
+
|
|
659
|
+
|
|
660
|
+
dc.DrawText('%3.2f'% vmin,int( x4 ),int( 1*textHeight))
|
|
661
|
+
dc.DrawText('%3.2f'% vmax,int( x4 + chartWidth - 2*mr),int( 1*textHeight))
|
|
662
|
+
|
|
663
|
+
dc.SetPen(wx.BLACK_PEN)
|
|
664
|
+
dc.DrawLine(int(x4 + ml),int( 2*textHeight),int( x4 + ml),int( 2*textHeight + tickSize))
|
|
665
|
+
dc.DrawLine(int(x4 + chartWidth - mr),int( 2*textHeight),int( x4 + chartWidth - mr),int( 2*textHeight + tickSize))
|
|
666
|
+
|
|
667
|
+
#dc.SetPen(wx.Pen(wx.BLUE, 2))
|
|
668
|
+
dc.SetPen(wx.Pen(self.lineColours[sourceEv],2))
|
|
669
|
+
|
|
670
|
+
xvt = frames_to_times(xv, self.eventSource, self.metaData) - self.startTime
|
|
671
|
+
|
|
672
|
+
#print xv,xvt, vv
|
|
673
|
+
|
|
674
|
+
x_0 = xvt[0]
|
|
675
|
+
v_0 = vv[0]
|
|
676
|
+
|
|
677
|
+
yp_ = (x_0 -minT)*pixPerS + 2*textHeight
|
|
678
|
+
xp_ = x4 + ml + (v_0 - vmin)*vsc
|
|
679
|
+
|
|
680
|
+
for x,v in zip(xvt[1:-1], vv[1:-1]):
|
|
681
|
+
yp = (x -minT)*pixPerS + 2*textHeight
|
|
682
|
+
xp = x4 + ml + (v - vmin)*vsc
|
|
683
|
+
dc.DrawLine(int(xp_),int( yp_),int( xp_),int( yp))
|
|
684
|
+
dc.DrawLine(int(xp_),int( yp),int( xp),int( yp))
|
|
685
|
+
xp_ = xp
|
|
686
|
+
yp_ = yp
|
|
687
|
+
|
|
688
|
+
yp = (xvt[-1] -minT)*pixPerS + 2*textHeight
|
|
689
|
+
xp = x4 + ml + (vv[-1] - vmin)*vsc
|
|
690
|
+
dc.DrawLine(int(xp_),int( yp_),int( xp_),int( yp))
|
|
691
|
+
|
|
692
|
+
x4 = x4 + chartWidth + hpadding
|
|
693
|
+
|
|
694
|
+
|
|
695
|
+
#pm = piecewiseMapping.GeneratePMFromEventList(elv.eventSource, md.Camera.CycleTime*1e-3, md.StartTime, md.Protocol.PiezoStartPos)
|
|
696
|
+
# if self.dragging == 'upper':
|
|
697
|
+
# dc.SetPen(wx.Pen(wx.GREEN, 2))
|
|
698
|
+
# else:
|
|
699
|
+
# dc.SetPen(wx.Pen(wx.RED, 2))
|
|
700
|
+
|
|
701
|
+
dc.SetTextForeground(wx.BLACK)
|
|
702
|
+
|
|
703
|
+
dc.SetPen(wx.NullPen)
|
|
704
|
+
dc.SetBrush(wx.NullBrush)
|
|
705
|
+
dc.SetFont(wx.NullFont)
|
|
706
|
+
|
|
707
|
+
def OnPaint(self,event):
|
|
708
|
+
if not (self.active and self.IsShownOnScreen()):
|
|
709
|
+
return
|
|
710
|
+
|
|
711
|
+
DC = wx.PaintDC(self)
|
|
712
|
+
#self.PrepareDC(DC)
|
|
713
|
+
|
|
714
|
+
s = self.GetVirtualSize()
|
|
715
|
+
MemBitmap = wx_compat.EmptyBitmap(s.GetWidth(), s.GetHeight())
|
|
716
|
+
#del DC
|
|
717
|
+
MemDC = wx.MemoryDC()
|
|
718
|
+
OldBitmap = MemDC.SelectObject(MemBitmap)
|
|
719
|
+
try:
|
|
720
|
+
#DC.BeginDrawing()
|
|
721
|
+
|
|
722
|
+
self.DoPaint(MemDC);
|
|
723
|
+
|
|
724
|
+
DC.Blit(0, 0, s.GetWidth(), s.GetHeight(), MemDC, 0, 0)
|
|
725
|
+
#DC.EndDrawing()
|
|
726
|
+
finally:
|
|
727
|
+
|
|
728
|
+
del MemDC
|
|
729
|
+
del MemBitmap
|
|
730
|
+
|
|
731
|
+
def OnSize(self,event):
|
|
732
|
+
self.Refresh()
|
|
733
|
+
self.Update()
|
|
734
|
+
|
|
735
|
+
def OnWheel(self, event):
|
|
736
|
+
rot = event.GetWheelRotation()
|
|
737
|
+
|
|
738
|
+
#get translated coordinates
|
|
739
|
+
#xp = event.GetX()*view_size_x/self.Size[0] + self.xmin
|
|
740
|
+
# keep current yp whilst zooming
|
|
741
|
+
t = time.time()
|
|
742
|
+
if (t - self._last_scroll) > 1:
|
|
743
|
+
yp = self.timeRange[0] + (float(event.GetY() - 2*self.textHeight)/self.pixPerS)
|
|
744
|
+
self._last_yp = yp
|
|
745
|
+
else:
|
|
746
|
+
yp = self._last_yp
|
|
747
|
+
|
|
748
|
+
self._last_scroll = t
|
|
749
|
+
#print 'yp = ', yp
|
|
750
|
+
|
|
751
|
+
dT = self.timeRange[1] - self.timeRange[0]
|
|
752
|
+
|
|
753
|
+
if rot < 0: #zoom out
|
|
754
|
+
if dT > (self.maxRange[1] - self.maxRange[0]):
|
|
755
|
+
# scrolled out as far as we can, ignore
|
|
756
|
+
return
|
|
757
|
+
|
|
758
|
+
dT = min(1.2*dT, self.maxRange[1] - self.maxRange[0])
|
|
759
|
+
elif rot > 0: #zoom in
|
|
760
|
+
if dT < self._min_time_span:
|
|
761
|
+
#zoomed in as far as we can, ignore scroll
|
|
762
|
+
return
|
|
763
|
+
|
|
764
|
+
dT = max(0.8*dT, self._min_time_span)
|
|
765
|
+
elif (rot == 0):
|
|
766
|
+
return
|
|
767
|
+
|
|
768
|
+
nMin = min(max(yp - 0.5 * dT, self.maxRange[0]), max(self.maxRange[1] - dT, self.maxRange[0]))
|
|
769
|
+
nMax = nMin + dT
|
|
770
|
+
|
|
771
|
+
if nMin == self.maxRange[0] and nMax == self.maxRange[1]:
|
|
772
|
+
self.autoRange = True
|
|
773
|
+
else:
|
|
774
|
+
self.autoRange = False
|
|
775
|
+
|
|
776
|
+
self.timeRange = (nMin, nMax)
|
|
777
|
+
self.Refresh()
|
|
778
|
+
self.Update()
|
|
779
|
+
|
|
780
|
+
def SetEventSource(self, eventSource):
|
|
781
|
+
self.eventSource = eventSource
|
|
782
|
+
self.evKeyNames = set()
|
|
783
|
+
for e in self.eventSource:
|
|
784
|
+
self.evKeyNames.add(six.ensure_str(e['EventName']))
|
|
785
|
+
|
|
786
|
+
colours = 0.9*cm.gist_rainbow(np.arange(len(self.evKeyNames))/float(len(self.evKeyNames)))[:,:3]
|
|
787
|
+
|
|
788
|
+
self.lineColours = {}
|
|
789
|
+
for k, c in zip(self.evKeyNames, colours):
|
|
790
|
+
self.lineColours[k] = wx.Colour(*((255*c).astype('i')))
|
|
791
|
+
|
|
792
|
+
if self.initialised:
|
|
793
|
+
self.Refresh()
|
|
794
|
+
self.Update()
|
|
795
|
+
|
|
796
|
+
def SetRange(self, range):
|
|
797
|
+
self.maxRange = range
|
|
798
|
+
if self.autoRange:
|
|
799
|
+
self.frameRange = range
|
|
800
|
+
self.Refresh()
|
|
801
|
+
self.Update()
|
|
802
|
+
|
|
803
|
+
def SetCharts(self, charts):
|
|
804
|
+
self.charts = charts
|
|
805
|
+
self.Refresh()
|