pyAgrum-nightly 2.3.0.9.dev202512061764412981__cp310-abi3-macosx_11_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (107) hide show
  1. pyagrum/__init__.py +165 -0
  2. pyagrum/_pyagrum.so +0 -0
  3. pyagrum/bnmixture/BNMInference.py +268 -0
  4. pyagrum/bnmixture/BNMLearning.py +376 -0
  5. pyagrum/bnmixture/BNMixture.py +464 -0
  6. pyagrum/bnmixture/__init__.py +60 -0
  7. pyagrum/bnmixture/notebook.py +1058 -0
  8. pyagrum/causal/_CausalFormula.py +280 -0
  9. pyagrum/causal/_CausalModel.py +436 -0
  10. pyagrum/causal/__init__.py +81 -0
  11. pyagrum/causal/_causalImpact.py +356 -0
  12. pyagrum/causal/_dSeparation.py +598 -0
  13. pyagrum/causal/_doAST.py +761 -0
  14. pyagrum/causal/_doCalculus.py +361 -0
  15. pyagrum/causal/_doorCriteria.py +374 -0
  16. pyagrum/causal/_exceptions.py +95 -0
  17. pyagrum/causal/_types.py +61 -0
  18. pyagrum/causal/causalEffectEstimation/_CausalEffectEstimation.py +1175 -0
  19. pyagrum/causal/causalEffectEstimation/_IVEstimators.py +718 -0
  20. pyagrum/causal/causalEffectEstimation/_RCTEstimators.py +132 -0
  21. pyagrum/causal/causalEffectEstimation/__init__.py +46 -0
  22. pyagrum/causal/causalEffectEstimation/_backdoorEstimators.py +774 -0
  23. pyagrum/causal/causalEffectEstimation/_causalBNEstimator.py +324 -0
  24. pyagrum/causal/causalEffectEstimation/_frontdoorEstimators.py +396 -0
  25. pyagrum/causal/causalEffectEstimation/_learners.py +118 -0
  26. pyagrum/causal/causalEffectEstimation/_utils.py +466 -0
  27. pyagrum/causal/notebook.py +171 -0
  28. pyagrum/clg/CLG.py +658 -0
  29. pyagrum/clg/GaussianVariable.py +111 -0
  30. pyagrum/clg/SEM.py +312 -0
  31. pyagrum/clg/__init__.py +63 -0
  32. pyagrum/clg/canonicalForm.py +408 -0
  33. pyagrum/clg/constants.py +54 -0
  34. pyagrum/clg/forwardSampling.py +202 -0
  35. pyagrum/clg/learning.py +776 -0
  36. pyagrum/clg/notebook.py +480 -0
  37. pyagrum/clg/variableElimination.py +271 -0
  38. pyagrum/common.py +60 -0
  39. pyagrum/config.py +319 -0
  40. pyagrum/ctbn/CIM.py +513 -0
  41. pyagrum/ctbn/CTBN.py +573 -0
  42. pyagrum/ctbn/CTBNGenerator.py +216 -0
  43. pyagrum/ctbn/CTBNInference.py +459 -0
  44. pyagrum/ctbn/CTBNLearner.py +161 -0
  45. pyagrum/ctbn/SamplesStats.py +671 -0
  46. pyagrum/ctbn/StatsIndepTest.py +355 -0
  47. pyagrum/ctbn/__init__.py +79 -0
  48. pyagrum/ctbn/constants.py +54 -0
  49. pyagrum/ctbn/notebook.py +264 -0
  50. pyagrum/defaults.ini +199 -0
  51. pyagrum/deprecated.py +95 -0
  52. pyagrum/explain/_ComputationCausal.py +75 -0
  53. pyagrum/explain/_ComputationConditional.py +48 -0
  54. pyagrum/explain/_ComputationMarginal.py +48 -0
  55. pyagrum/explain/_CustomShapleyCache.py +110 -0
  56. pyagrum/explain/_Explainer.py +176 -0
  57. pyagrum/explain/_Explanation.py +70 -0
  58. pyagrum/explain/_FIFOCache.py +54 -0
  59. pyagrum/explain/_ShallCausalValues.py +204 -0
  60. pyagrum/explain/_ShallConditionalValues.py +155 -0
  61. pyagrum/explain/_ShallMarginalValues.py +155 -0
  62. pyagrum/explain/_ShallValues.py +296 -0
  63. pyagrum/explain/_ShapCausalValues.py +208 -0
  64. pyagrum/explain/_ShapConditionalValues.py +126 -0
  65. pyagrum/explain/_ShapMarginalValues.py +191 -0
  66. pyagrum/explain/_ShapleyValues.py +298 -0
  67. pyagrum/explain/__init__.py +81 -0
  68. pyagrum/explain/_explGeneralizedMarkovBlanket.py +152 -0
  69. pyagrum/explain/_explIndependenceListForPairs.py +146 -0
  70. pyagrum/explain/_explInformationGraph.py +264 -0
  71. pyagrum/explain/notebook/__init__.py +54 -0
  72. pyagrum/explain/notebook/_bar.py +142 -0
  73. pyagrum/explain/notebook/_beeswarm.py +174 -0
  74. pyagrum/explain/notebook/_showShapValues.py +97 -0
  75. pyagrum/explain/notebook/_waterfall.py +220 -0
  76. pyagrum/explain/shapley.py +225 -0
  77. pyagrum/lib/__init__.py +46 -0
  78. pyagrum/lib/_colors.py +390 -0
  79. pyagrum/lib/bn2graph.py +299 -0
  80. pyagrum/lib/bn2roc.py +1026 -0
  81. pyagrum/lib/bn2scores.py +217 -0
  82. pyagrum/lib/bn_vs_bn.py +605 -0
  83. pyagrum/lib/cn2graph.py +305 -0
  84. pyagrum/lib/discreteTypeProcessor.py +1102 -0
  85. pyagrum/lib/discretizer.py +58 -0
  86. pyagrum/lib/dynamicBN.py +390 -0
  87. pyagrum/lib/explain.py +57 -0
  88. pyagrum/lib/export.py +84 -0
  89. pyagrum/lib/id2graph.py +258 -0
  90. pyagrum/lib/image.py +387 -0
  91. pyagrum/lib/ipython.py +307 -0
  92. pyagrum/lib/mrf2graph.py +471 -0
  93. pyagrum/lib/notebook.py +1821 -0
  94. pyagrum/lib/proba_histogram.py +552 -0
  95. pyagrum/lib/utils.py +138 -0
  96. pyagrum/pyagrum.py +31495 -0
  97. pyagrum/skbn/_MBCalcul.py +242 -0
  98. pyagrum/skbn/__init__.py +49 -0
  99. pyagrum/skbn/_learningMethods.py +282 -0
  100. pyagrum/skbn/_utils.py +297 -0
  101. pyagrum/skbn/bnclassifier.py +1014 -0
  102. pyagrum_nightly-2.3.0.9.dev202512061764412981.dist-info/LICENSE.md +12 -0
  103. pyagrum_nightly-2.3.0.9.dev202512061764412981.dist-info/LICENSES/LGPL-3.0-or-later.txt +304 -0
  104. pyagrum_nightly-2.3.0.9.dev202512061764412981.dist-info/LICENSES/MIT.txt +18 -0
  105. pyagrum_nightly-2.3.0.9.dev202512061764412981.dist-info/METADATA +145 -0
  106. pyagrum_nightly-2.3.0.9.dev202512061764412981.dist-info/RECORD +107 -0
  107. pyagrum_nightly-2.3.0.9.dev202512061764412981.dist-info/WHEEL +4 -0
@@ -0,0 +1,132 @@
1
+ ############################################################################
2
+ # This file is part of the aGrUM/pyAgrum library. #
3
+ # #
4
+ # Copyright (c) 2005-2025 by #
5
+ # - Pierre-Henri WUILLEMIN(_at_LIP6) #
6
+ # - Christophe GONZALES(_at_AMU) #
7
+ # #
8
+ # The aGrUM/pyAgrum library is free software; you can redistribute it #
9
+ # and/or modify it under the terms of either : #
10
+ # #
11
+ # - the GNU Lesser General Public License as published by #
12
+ # the Free Software Foundation, either version 3 of the License, #
13
+ # or (at your option) any later version, #
14
+ # - the MIT license (MIT), #
15
+ # - or both in dual license, as here. #
16
+ # #
17
+ # (see https://agrum.gitlab.io/articles/dual-licenses-lgplv3mit.html) #
18
+ # #
19
+ # This aGrUM/pyAgrum library is distributed in the hope that it will be #
20
+ # useful, but WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, #
21
+ # INCLUDING BUT NOT LIMITED TO THE WARRANTIES MERCHANTABILITY or FITNESS #
22
+ # FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE #
23
+ # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER #
24
+ # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, #
25
+ # ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR #
26
+ # OTHER DEALINGS IN THE SOFTWARE. #
27
+ # #
28
+ # See LICENCES for more details. #
29
+ # #
30
+ # SPDX-FileCopyrightText: Copyright 2005-2025 #
31
+ # - Pierre-Henri WUILLEMIN(_at_LIP6) #
32
+ # - Christophe GONZALES(_at_AMU) #
33
+ # SPDX-License-Identifier: LGPL-3.0-or-later OR MIT #
34
+ # #
35
+ # Contact : info_at_agrum_dot_org #
36
+ # homepage : http://agrum.gitlab.io #
37
+ # gitlab : https://gitlab.com/agrumery/agrum #
38
+ # #
39
+ ############################################################################
40
+
41
+ import pandas as pd
42
+ import numpy as np
43
+
44
+
45
+ class DM:
46
+ """
47
+ A simple Differnce in Means (DM) estimator which computes the
48
+ Average Causal Effect (ACE) under the ignorability assumption,
49
+ in Randomized Controlled Trials (RCT).
50
+ """
51
+
52
+ def __init__(self) -> None:
53
+ """
54
+ Initialize an DM estimator.
55
+ """
56
+
57
+ def fit(
58
+ self,
59
+ X: np.matrix | np.ndarray | pd.DataFrame,
60
+ treatment: np.ndarray | pd.Series,
61
+ y: np.ndarray | pd.Series,
62
+ ) -> None:
63
+ """
64
+ Fit the inference model.
65
+
66
+ Parameters
67
+ ----------
68
+ X: np.matrix or np.ndarray or pd.DataFrame
69
+ The covariate matrix.
70
+ treatment: np.ndarray or pd.Series
71
+ The treatment assignment vector.
72
+ y: np.ndarray or pd.Series,
73
+ The outcome vector.
74
+ """
75
+
76
+ def predict(
77
+ self,
78
+ X: np.matrix | np.ndarray | pd.DataFrame,
79
+ treatment: np.ndarray | pd.Series = None,
80
+ y: np.ndarray | pd.Series = None,
81
+ ) -> np.ndarray:
82
+ """
83
+ Predict the Average Causal Effect (ACE).
84
+
85
+ Note: This is a placeholder function for the API.
86
+
87
+ Parameters
88
+ ----------
89
+ X: np.matrix or np.ndarray or pd.DataFrame
90
+ The covariate matrix.
91
+ treatment: np.ndarray or pd.Series, optional
92
+ The vector of treatment assignments.
93
+ y: np.ndarray or pd.Series, optional
94
+ The vector of outcomes.
95
+
96
+ Returns
97
+ -------
98
+ np.ndarray
99
+ An array containing the predicted ACE.
100
+ """
101
+
102
+ return [y[treatment == 1].mean() - y[treatment == 0].mean()] * len(y)
103
+
104
+ def estimate_ate(
105
+ self,
106
+ X: np.matrix | np.ndarray | pd.DataFrame = None,
107
+ treatment: np.ndarray | pd.Series = None,
108
+ y: np.ndarray | pd.Series = None,
109
+ w: np.matrix | np.ndarray | pd.DataFrame = None,
110
+ pretrain: bool = True,
111
+ ) -> float:
112
+ """
113
+ Predicts the Average Causal Effect (ACE).
114
+ (The term "Average Treatment Effect" (ATE) is used in
115
+ the method name for compatibility purposes.)
116
+
117
+ Parameters
118
+ ----------
119
+ X: np.matrix or np.ndarray or pd.DataFrame
120
+ The covariate matrix.
121
+ treatment: np.ndarray or pd.Series, optional
122
+ The vector of treatment assignments.
123
+ y: np.ndarray or pd.Series, optional
124
+ The vector of outcomes.
125
+
126
+ Returns
127
+ -------
128
+ float
129
+ The value of the ACE.
130
+ """
131
+
132
+ return y[treatment == 1].mean() - y[treatment == 0].mean()
@@ -0,0 +1,46 @@
1
+ ############################################################################
2
+ # This file is part of the aGrUM/pyAgrum library. #
3
+ # #
4
+ # Copyright (c) 2005-2025 by #
5
+ # - Pierre-Henri WUILLEMIN(_at_LIP6) #
6
+ # - Christophe GONZALES(_at_AMU) #
7
+ # #
8
+ # The aGrUM/pyAgrum library is free software; you can redistribute it #
9
+ # and/or modify it under the terms of either : #
10
+ # #
11
+ # - the GNU Lesser General Public License as published by #
12
+ # the Free Software Foundation, either version 3 of the License, #
13
+ # or (at your option) any later version, #
14
+ # - the MIT license (MIT), #
15
+ # - or both in dual license, as here. #
16
+ # #
17
+ # (see https://agrum.gitlab.io/articles/dual-licenses-lgplv3mit.html) #
18
+ # #
19
+ # This aGrUM/pyAgrum library is distributed in the hope that it will be #
20
+ # useful, but WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, #
21
+ # INCLUDING BUT NOT LIMITED TO THE WARRANTIES MERCHANTABILITY or FITNESS #
22
+ # FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE #
23
+ # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER #
24
+ # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, #
25
+ # ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR #
26
+ # OTHER DEALINGS IN THE SOFTWARE. #
27
+ # #
28
+ # See LICENCES for more details. #
29
+ # #
30
+ # SPDX-FileCopyrightText: Copyright 2005-2025 #
31
+ # - Pierre-Henri WUILLEMIN(_at_LIP6) #
32
+ # - Christophe GONZALES(_at_AMU) #
33
+ # SPDX-License-Identifier: LGPL-3.0-or-later OR MIT #
34
+ # #
35
+ # Contact : info_at_agrum_dot_org #
36
+ # homepage : http://agrum.gitlab.io #
37
+ # gitlab : https://gitlab.com/agrumery/agrum #
38
+ # #
39
+ ############################################################################
40
+
41
+ __author__ = "Thierry Rioual, Pierre-Henri Wuillemin"
42
+ __copyright__ = "(c) 2019-2024 PARIS"
43
+
44
+ from ._CausalEffectEstimation import CausalEffectEstimation
45
+
46
+ __all__ = ["CausalEffectEstimation"]