py-neuromodulation 0.0.3__py3-none-any.whl → 0.0.4__py3-none-any.whl

packages/tmsi/build/lib/apex_sdk/device/devices/apex/measurements/eeg_measurement.py

@@ -1,150 +0,0 @@
-"""
-(c) 2022 Twente Medical Systems International B.V., Oldenzaal The Netherlands
-
-Licensed under the Apache License, Version 2.0 (the "License");
-you may not use this file except in compliance with the License.
-You may obtain a copy of the License at
-
-    http://www.apache.org/licenses/LICENSE-2.0
-
-Unless required by applicable law or agreed to in writing, software
-distributed under the License is distributed on an "AS IS" BASIS,
-WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-See the License for the specific language governing permissions and
-limitations under the License.
-
-#######  #     #   #####   #
-   #     ##   ##  #        
-   #     # # # #  #        #
-   #     #  #  #   #####   #
-   #     #     #        #  #
-   #     #     #        #  #
-   #     #     #  #####    #
-
-/**
- * @file eeg_measurement.py 
- * @brief 
- * Class to handle the communication with the device for  EEG acquisition.
- */
-
-
-"""
-
-from copy import deepcopy
-from ctypes import *
-import time
-
-from .....tmsi_utilities.tmsi_logger import TMSiLogger as logger
-from .....sample_data_server.sample_data_server import SampleDataServer
-from .....sample_data_server.sample_data import SampleData
-from .....tmsi_utilities import support_functions
-from .....tmsi_utilities.decorators import LogPerformances
-from ..apex_API_structures import TMSiDevSampleRequest
-from ..apex_API_enums import SampleControl, TMSiDeviceRetVal
-from ....tmsi_measurement import TMSiMeasurement
-
-
-class EEGMeasurement(TMSiMeasurement):
-    def __init__(self, dev, name="EEG Measurement"):
-        super().__init__(dev=dev, name=name)
-        self._sample_data_buffer = (c_float * self._sample_data_buffer_size)(0)
-        self._num_samples_per_set = dev.get_num_channels()
-        self._converter = {}
-        channels = self._dev.get_device_channels()
-        for i in range(self._num_samples_per_set):
-            conversion_factor = 10 ** channels[i].get_channel_exp()
-            if conversion_factor in self._converter:
-                self._converter[conversion_factor].append(i)
-            else:
-                self._converter[conversion_factor] = [i]
-
-    @LogPerformances
-    def start(self):
-        self._dev.reset_device_data_buffer()
-        measurement_request = TMSiDevSampleRequest()
-        measurement_request.DisableLiveImp = self._disable_live_impedance
-        measurement_request.DisableAvrRefCalc = (
-            self._disable_average_reference_calculation
-        )
-        measurement_request.StartStop = SampleControl.StartSampling.value
-        self._dev.set_device_sampling_request(measurement_request)
-        self._sampling_thread.start()
-        self._conversion_thread.start()
-
-    @LogPerformances
-    def stop(self):
-        measurement_request = TMSiDevSampleRequest()
-        measurement_request.DisableLiveImp = self._disable_live_impedance
-        measurement_request.DisableAvrRefCalc = (
-            self._disable_average_reference_calculation
-        )
-        measurement_request.StartStop = SampleControl.StopSampling.value
-        self._dev.set_device_sampling_request(measurement_request)
-        self._sampling_thread.stop()
-        self._conversion_thread.stop()
-
-    @LogPerformances
-    def _conversion_function(self):
-        while not self._conversion_queue.empty():
-            (
-                sample_data_buffer,
-                retrieved_sample_sets,
-            ) = self._conversion_queue.get()
-            if retrieved_sample_sets > 0:
-                sample_mat = support_functions.array_to_matrix(
-                    sample_data_buffer[
-                        : self._num_samples_per_set * retrieved_sample_sets
-                    ],
-                    self._num_samples_per_set,
-                )
-                for i in self._float_channels:
-                    sample_mat[i] = support_functions.float_to_uint(
-                        sample_mat[i]
-                    )
-                for factor in self._converter.keys():
-                    for channel in self._converter[factor]:
-                        sample_mat[channel] = [
-                            i / factor for i in sample_mat[channel]
-                        ]
-                samples = support_functions.matrix_to_multiplexed_array(
-                    sample_mat
-                )
-                samples = [
-                    0.0 if i == 4294967296000000.0 else i for i in samples
-                ]
-                sd = SampleData(
-                    retrieved_sample_sets, self._num_samples_per_set, samples
-                )
-                logger().debug(
-                    "Data delivered to sample data server: {} channels, {} samples".format(
-                        self._num_samples_per_set, retrieved_sample_sets
-                    )
-                )
-                SampleDataServer().put_sample_data(self._dev.get_id(), sd)
-
-    @LogPerformances
-    def _sampling_function(self):
-        ret = self._dev.get_device_data(
-            pointer(self._sample_data_buffer),
-            self._sample_data_buffer_size,
-            pointer(self._retrieved_sample_sets),
-            pointer(self._retrieved_data_type),
-        )
-        if ret == TMSiDeviceRetVal.TMSiStatusOK:
-            if self._retrieved_sample_sets.value > 0:
-                self._conversion_queue.put(
-                    (
-                        deepcopy(self._sample_data_buffer),
-                        self._retrieved_sample_sets.value,
-                    )
-                )
-                self._tic_timeout = time.perf_counter()
-                self._empty_read_counter = 0
-            else:
-                if self._empty_read_counter == 0:
-                    self._empty_read_counter = 1
-        if self._download_samples_limit is not None:
-            self._downloaded_samples += self._retrieved_sample_sets.value
-            self._download_percentage = (
-                self._downloaded_samples * 100.0 / self._download_samples_limit
-            )

packages/tmsi/build/lib/apex_sdk/device/devices/apex/measurements/impedance_measurement.py

@@ -1,129 +0,0 @@
-"""
-(c) 2022 Twente Medical Systems International B.V., Oldenzaal The Netherlands
-
-Licensed under the Apache License, Version 2.0 (the "License");
-you may not use this file except in compliance with the License.
-You may obtain a copy of the License at
-
-    http://www.apache.org/licenses/LICENSE-2.0
-
-Unless required by applicable law or agreed to in writing, software
-distributed under the License is distributed on an "AS IS" BASIS,
-WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-See the License for the specific language governing permissions and
-limitations under the License.
-
-#######  #     #   #####   #
-   #     ##   ##  #        
-   #     # # # #  #        #
-   #     #  #  #   #####   #
-   #     #     #        #  #
-   #     #     #        #  #
-   #     #     #  #####    #
-
-/**
- * @file impedance_measurement.py 
- * @brief 
- * Class to handle the communication with the device for  impedance acquisition.
- */
-
-
-"""
-
-from copy import deepcopy
-from ctypes import *
-import time
-
-from .....tmsi_utilities.tmsi_logger import TMSiLogger as logger
-from .....sample_data_server.sample_data_server import SampleDataServer
-from .....sample_data_server.sample_data import SampleData
-from .....tmsi_utilities.decorators import LogPerformances
-from ..apex_API_structures import TMSiImpedanceSample, TMSiDevImpedanceRequest
-from ..apex_API_enums import ImpedanceControl, TMSiDeviceRetVal
-from ....tmsi_measurement import TMSiMeasurement
-
-
-class ImpedanceMeasurement(TMSiMeasurement):
-    def __init__(self, dev, name="Impedance Measurement"):
-        super().__init__(dev=dev, name=name)
-        self._sample_data_buffer = (
-            TMSiImpedanceSample * self._sample_data_buffer_size
-        )(TMSiImpedanceSample())
-        self._num_samples_per_set = dev.get_num_impedance_channels()
-
-    @LogPerformances
-    def _sampling_function(self):
-        ret = self._dev.get_device_impedance_data(
-            pointer(self._sample_data_buffer),
-            self._sample_data_buffer_size,
-            pointer(self._retrieved_sample_sets),
-        )
-        if ret == TMSiDeviceRetVal.TMSiStatusOK:
-            if self._retrieved_sample_sets.value > 0:
-                self._conversion_queue.put(
-                    (
-                        deepcopy(self._sample_data_buffer),
-                        self._retrieved_sample_sets.value,
-                    )
-                )
-                self._empty_read_counter = 0
-            else:
-                if self._empty_read_counter == 0:
-                    self._tic_timeout = time.perf_counter()
-                self._empty_read_counter += 1
-
-    @LogPerformances
-    def _conversion_function(self):
-        while not self._conversion_queue.empty():
-            (
-                sample_data_buffer,
-                retrieved_sample_sets,
-            ) = self._conversion_queue.get()
-            if retrieved_sample_sets > 0:
-                sample_mat = [
-                    sample_data_buffer[
-                        ii : retrieved_sample_sets
-                        * self._num_samples_per_set : self._num_samples_per_set
-                    ]
-                    for ii in range(self._num_samples_per_set)
-                ]
-                samples_exploded = [
-                    [
-                        i.ImpedanceRe if ii % 2 == 0 else i.ImpedanceIm
-                        for i in sample_mat[ii // 2]
-                    ]
-                    for ii in range(self._num_samples_per_set * 2)
-                ]
-                samples_exploded_inline = [
-                    samples_exploded[i][j]
-                    for j in range(len(samples_exploded[0]))
-                    for i in range(len(samples_exploded))
-                ]
-                sd = SampleData(
-                    retrieved_sample_sets,
-                    self._num_samples_per_set * 2,
-                    samples_exploded_inline,
-                )
-                logger().debug(
-                    "Data delivered to sample data server: {} channels, {} samples".format(
-                        self._num_samples_per_set, retrieved_sample_sets
-                    )
-                )
-                SampleDataServer().put_sample_data(self._dev.get_id(), sd)
-
-    @LogPerformances
-    def start(self):
-        self._dev.reset_device_data_buffer()
-        measurement_request = TMSiDevImpedanceRequest()
-        measurement_request.StartStop = ImpedanceControl.StartImpedance.value
-        self._dev.set_device_impedance_request(measurement_request)
-        self._sampling_thread.start()
-        self._conversion_thread.start()
-
-    @LogPerformances
-    def stop(self):
-        measurement_request = TMSiDevImpedanceRequest()
-        measurement_request.StartStop = ImpedanceControl.StopImpedance.value
-        self._dev.set_device_impedance_request(measurement_request)
-        self._sampling_thread.stop()
-        self._conversion_thread.stop()

packages/tmsi/build/lib/apex_sdk/device/threads/conversion_thread.py

@@ -1,59 +0,0 @@
-"""
-(c) 2022 Twente Medical Systems International B.V., Oldenzaal The Netherlands
-
-Licensed under the Apache License, Version 2.0 (the "License");
-you may not use this file except in compliance with the License.
-You may obtain a copy of the License at
-
-    http://www.apache.org/licenses/LICENSE-2.0
-
-Unless required by applicable law or agreed to in writing, software
-distributed under the License is distributed on an "AS IS" BASIS,
-WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-See the License for the specific language governing permissions and
-limitations under the License.
-
-#######  #     #   #####   #
-   #     ##   ##  #        
-   #     # # # #  #        #
-   #     #  #  #   #####   #
-   #     #     #        #  #
-   #     #     #        #  #
-   #     #     #  #####    #
-
-/**
- * @file conversion_thread.py 
- * @brief 
- * Conversion Thread interface.
- */
-
-
-"""
-
-import threading
-import time
-
-
-class ConversionThread(threading.Thread):
-    def __init__(
-        self, conversion_function, pause=0.01, name="Conversion Thread"
-    ):
-        super().__init__()
-        self.__name = name
-        self.__conversion_function = conversion_function
-        self.__pause = pause
-
-    def get_pause(self):
-        return self.__pause
-
-    def run(self):
-        self.__converting = True
-        while self.__converting:
-            self.__conversion_function()
-            time.sleep(self.__pause)
-
-    def set_pause(self, pause):
-        self.__pause = pause
-
-    def stop(self):
-        self.__converting = False

packages/tmsi/build/lib/apex_sdk/device/threads/sampling_thread.py

@@ -1,57 +0,0 @@
-"""
-(c) 2022 Twente Medical Systems International B.V., Oldenzaal The Netherlands
-
-Licensed under the Apache License, Version 2.0 (the "License");
-you may not use this file except in compliance with the License.
-You may obtain a copy of the License at
-
-    http://www.apache.org/licenses/LICENSE-2.0
-
-Unless required by applicable law or agreed to in writing, software
-distributed under the License is distributed on an "AS IS" BASIS,
-WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-See the License for the specific language governing permissions and
-limitations under the License.
-
-#######  #     #   #####   #
-   #     ##   ##  #        
-   #     # # # #  #        #
-   #     #  #  #   #####   #
-   #     #     #        #  #
-   #     #     #        #  #
-   #     #     #  #####    #
-
-/**
- * @file sampling_thread.py 
- * @brief 
- * Sampling Thread interface
- */
-
-
-"""
-
-import threading
-import time
-
-
-class SamplingThread(threading.Thread):
-    def __init__(self, sampling_function, pause=0.01, name="Sampling Thread"):
-        super().__init__()
-        self.__name = name
-        self.__sampling_function = sampling_function
-        self.__pause = pause
-
-    def get_pause(self):
-        return self.__pause
-
-    def run(self):
-        self.__sampling = True
-        while self.__sampling:
-            self.__sampling_function()
-            time.sleep(self.__pause)
-
-    def set_pause(self, pause):
-        self.__pause = pause
-
-    def stop(self):
-        self.__sampling = False

packages/tmsi/build/lib/apex_sdk/device/tmsi_channel.py

@@ -1,83 +0,0 @@
-"""
-(c) 2022 Twente Medical Systems International B.V., Oldenzaal The Netherlands
-
-Licensed under the Apache License, Version 2.0 (the "License");
-you may not use this file except in compliance with the License.
-You may obtain a copy of the License at
-
-    http://www.apache.org/licenses/LICENSE-2.0
-
-Unless required by applicable law or agreed to in writing, software
-distributed under the License is distributed on an "AS IS" BASIS,
-WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-See the License for the specific language governing permissions and
-limitations under the License.
-
-#######  #     #   #####   #
-   #     ##   ##  #        
-   #     # # # #  #        #
-   #     #  #  #   #####   #
-   #     #     #        #  #
-   #     #     #        #  #
-   #     #     #  #####    #
-
-/**
- * @file tmsi_channel.py 
- * @brief 
- * TMSi Channel interface.
- */
-
-
-"""
-
-from .tmsi_device_enums import ChannelType
-
-
-class TMSiChannel:
-    def __init__(self):
-        self._alt_name = "-"
-        self._chan_divider = -1
-        self._def_name = "-"
-        self._enabled = False
-        self._exp = 0
-        self._format = 0
-        self._is_reference = 0
-        self._imp_divider = -1
-        self._sample_rate = 0
-        self._type = ChannelType.unknown
-        self._unit_name = "-"
-
-    def get_channel_exp(self):
-        return self._exp
-
-    def get_channel_format(self):
-        return self._format
-
-    def get_channel_name(self):
-        return self._alt_name
-
-    def get_channel_type(self):
-        return self._type
-
-    def get_channel_unit_name(self):
-        return self._unit_name
-
-    def is_reference(self):
-        if self._is_reference == 1:
-            return 1
-        else:
-            return 0
-
-    def set_device_channel_information(self):
-        raise NotImplementedError("method not available for this channel")
-
-    def set_device_channel_names(
-        self, default_channel_name=None, alternative_channel_name=None
-    ):
-        if default_channel_name is not None:
-            self._def_name = default_channel_name
-        if alternative_channel_name is not None:
-            self._alt_name = alternative_channel_name
-
-    def set_device_reference(self, is_reference):
-        self._is_reference = is_reference

packages/tmsi/build/lib/apex_sdk/device/tmsi_device.py

@@ -1,201 +0,0 @@
-"""
-(c) 2022 Twente Medical Systems International B.V., Oldenzaal The Netherlands
-
-Licensed under the Apache License, Version 2.0 (the "License");
-you may not use this file except in compliance with the License.
-You may obtain a copy of the License at
-
-    http://www.apache.org/licenses/LICENSE-2.0
-
-Unless required by applicable law or agreed to in writing, software
-distributed under the License is distributed on an "AS IS" BASIS,
-WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-See the License for the specific language governing permissions and
-limitations under the License.
-
-#######  #     #   #####   #
-   #     ##   ##  #        
-   #     # # # #  #        #
-   #     #  #  #   #####   #
-   #     #     #        #  #
-   #     #     #        #  #
-   #     #     #  #####    #
-
-/**
- * @file tmsi_device.py 
- * @brief 
- * TMSi Device interface.
- */
-
-
-"""
-
-
-class TMSiDevice:
-    def __init__(self):
-        raise NotImplementedError("method not available for this device")
-
-    def close(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def discover(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def download_file_from_device(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def export_configuration(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def import_configuration(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_card_recording_config(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_card_status(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_active_channels(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_card_file_info(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_card_file_list(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_channels(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_data(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_handle_value(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_impedance_channels(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_impedance_data(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_info_report(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_interface_status(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_list(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_power_status(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_sampling_config(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_sampling_frequency(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_serial_number(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_state(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_time(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_device_type(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_dongle_list(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_dongle_serial_number(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_downloaded_percentage(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_dr_interface(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_event(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_event_buffer(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_id(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_live_impedance(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_num_channels(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_num_impedance_channels(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def get_sdk(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def open(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def pair_device(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def reset_device_card(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def reset_device_data_buffer(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def reset_device_event_buffer(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def reset_to_factory_default(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def set_card_recording_config(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def set_device_channel_names(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def set_device_download_file_request(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def set_device_impedance_request(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def set_device_interface(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def set_device_references(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def set_device_sampling_config(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def set_device_sampling_request(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def set_device_time(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def start_download_file(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def start_measurement(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def stop_download_file(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")
-
-    def stop_measurement(*args, **kwargs):
-        raise NotImplementedError("method not available for this device")