py-neuromodulation 0.0.3__py3-none-any.whl → 0.0.4__py3-none-any.whl

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Files changed (176) hide show
  1. py_neuromodulation/ConnectivityDecoding/Automated Anatomical Labeling 3 (Rolls 2020).nii +0 -0
  2. py_neuromodulation/ConnectivityDecoding/_get_grid_hull.m +34 -0
  3. py_neuromodulation/ConnectivityDecoding/_get_grid_whole_brain.py +106 -0
  4. py_neuromodulation/ConnectivityDecoding/_helper_write_connectome.py +119 -0
  5. py_neuromodulation/ConnectivityDecoding/mni_coords_cortical_surface.mat +0 -0
  6. py_neuromodulation/ConnectivityDecoding/mni_coords_whole_brain.mat +0 -0
  7. py_neuromodulation/ConnectivityDecoding/rmap_func_all.nii +0 -0
  8. py_neuromodulation/ConnectivityDecoding/rmap_struc.nii +0 -0
  9. py_neuromodulation/data/README +6 -0
  10. py_neuromodulation/data/dataset_description.json +8 -0
  11. py_neuromodulation/data/participants.json +32 -0
  12. py_neuromodulation/data/participants.tsv +2 -0
  13. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_space-mni_coordsystem.json +5 -0
  14. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_space-mni_electrodes.tsv +11 -0
  15. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_channels.tsv +11 -0
  16. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_ieeg.eeg +0 -0
  17. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_ieeg.json +18 -0
  18. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_ieeg.vhdr +35 -0
  19. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_ieeg.vmrk +13 -0
  20. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/sub-testsub_ses-EphysMedOff_scans.tsv +2 -0
  21. py_neuromodulation/grid_cortex.tsv +40 -0
  22. py_neuromodulation/grid_subcortex.tsv +1429 -0
  23. py_neuromodulation/nm_settings.json +338 -0
  24. py_neuromodulation/nm_stream_offline.py +7 -6
  25. py_neuromodulation/plots/STN_surf.mat +0 -0
  26. py_neuromodulation/plots/Vertices.mat +0 -0
  27. py_neuromodulation/plots/faces.mat +0 -0
  28. py_neuromodulation/plots/grid.mat +0 -0
  29. {py_neuromodulation-0.0.3.dist-info → py_neuromodulation-0.0.4.dist-info}/METADATA +182 -182
  30. py_neuromodulation-0.0.4.dist-info/RECORD +72 -0
  31. {py_neuromodulation-0.0.3.dist-info → py_neuromodulation-0.0.4.dist-info}/WHEEL +1 -2
  32. docs/build/_downloads/09df217f95985497f45d69e2d4bdc5b1/plot_2_example_add_feature.py +0 -68
  33. docs/build/_downloads/3b4900a2b2818ff30362215b76f7d5eb/plot_1_example_BIDS.py +0 -233
  34. docs/build/_downloads/7e92dd2e6cc86b239d14cafad972ae4f/plot_3_example_sharpwave_analysis.py +0 -219
  35. docs/build/_downloads/c2db0bf2b334d541b00662b991682256/plot_6_real_time_demo.py +0 -97
  36. docs/build/_downloads/ce3914826f782cbd1ea8fd024eaf0ac3/plot_5_example_rmap_computing.py +0 -64
  37. docs/build/_downloads/da36848a41e6a3235d91fb7cfb6d59b4/plot_0_first_demo.py +0 -192
  38. docs/build/_downloads/eaa4305c75b19a1e2eea941f742a6331/plot_4_example_gridPointProjection.py +0 -210
  39. docs/build/html/_downloads/09df217f95985497f45d69e2d4bdc5b1/plot_2_example_add_feature.py +0 -68
  40. docs/build/html/_downloads/3b4900a2b2818ff30362215b76f7d5eb/plot_1_example_BIDS.py +0 -239
  41. docs/build/html/_downloads/7e92dd2e6cc86b239d14cafad972ae4f/plot_3_example_sharpwave_analysis.py +0 -219
  42. docs/build/html/_downloads/c2db0bf2b334d541b00662b991682256/plot_6_real_time_demo.py +0 -97
  43. docs/build/html/_downloads/ce3914826f782cbd1ea8fd024eaf0ac3/plot_5_example_rmap_computing.py +0 -64
  44. docs/build/html/_downloads/da36848a41e6a3235d91fb7cfb6d59b4/plot_0_first_demo.py +0 -192
  45. docs/build/html/_downloads/eaa4305c75b19a1e2eea941f742a6331/plot_4_example_gridPointProjection.py +0 -210
  46. docs/source/_build/html/_downloads/09df217f95985497f45d69e2d4bdc5b1/plot_2_example_add_feature.py +0 -76
  47. docs/source/_build/html/_downloads/0d0d0a76e8f648d5d3cbc47da6351932/plot_real_time_demo.py +0 -97
  48. docs/source/_build/html/_downloads/3b4900a2b2818ff30362215b76f7d5eb/plot_1_example_BIDS.py +0 -240
  49. docs/source/_build/html/_downloads/5d73cadc59a8805c47e3b84063afc157/plot_example_BIDS.py +0 -233
  50. docs/source/_build/html/_downloads/7660317fa5a6bfbd12fcca9961457fc4/plot_example_rmap_computing.py +0 -63
  51. docs/source/_build/html/_downloads/7e92dd2e6cc86b239d14cafad972ae4f/plot_3_example_sharpwave_analysis.py +0 -219
  52. docs/source/_build/html/_downloads/839e5b319379f7fd9e867deb00fd797f/plot_example_gridPointProjection.py +0 -210
  53. docs/source/_build/html/_downloads/ae8be19afe5e559f011fc9b138968ba0/plot_first_demo.py +0 -192
  54. docs/source/_build/html/_downloads/b8b06cacc17969d3725a0b6f1d7741c5/plot_example_sharpwave_analysis.py +0 -219
  55. docs/source/_build/html/_downloads/c2db0bf2b334d541b00662b991682256/plot_6_real_time_demo.py +0 -121
  56. docs/source/_build/html/_downloads/c31a86c0b68cb4167d968091ace8080d/plot_example_add_feature.py +0 -68
  57. docs/source/_build/html/_downloads/ce3914826f782cbd1ea8fd024eaf0ac3/plot_5_example_rmap_computing.py +0 -64
  58. docs/source/_build/html/_downloads/da36848a41e6a3235d91fb7cfb6d59b4/plot_0_first_demo.py +0 -189
  59. docs/source/_build/html/_downloads/eaa4305c75b19a1e2eea941f742a6331/plot_4_example_gridPointProjection.py +0 -210
  60. docs/source/auto_examples/plot_0_first_demo.py +0 -189
  61. docs/source/auto_examples/plot_1_example_BIDS.py +0 -240
  62. docs/source/auto_examples/plot_2_example_add_feature.py +0 -76
  63. docs/source/auto_examples/plot_3_example_sharpwave_analysis.py +0 -219
  64. docs/source/auto_examples/plot_4_example_gridPointProjection.py +0 -210
  65. docs/source/auto_examples/plot_5_example_rmap_computing.py +0 -64
  66. docs/source/auto_examples/plot_6_real_time_demo.py +0 -121
  67. docs/source/conf.py +0 -105
  68. examples/plot_0_first_demo.py +0 -189
  69. examples/plot_1_example_BIDS.py +0 -240
  70. examples/plot_2_example_add_feature.py +0 -76
  71. examples/plot_3_example_sharpwave_analysis.py +0 -219
  72. examples/plot_4_example_gridPointProjection.py +0 -210
  73. examples/plot_5_example_rmap_computing.py +0 -64
  74. examples/plot_6_real_time_demo.py +0 -121
  75. packages/realtime_decoding/build/lib/realtime_decoding/__init__.py +0 -4
  76. packages/realtime_decoding/build/lib/realtime_decoding/decoder.py +0 -104
  77. packages/realtime_decoding/build/lib/realtime_decoding/features.py +0 -163
  78. packages/realtime_decoding/build/lib/realtime_decoding/helpers.py +0 -15
  79. packages/realtime_decoding/build/lib/realtime_decoding/run_decoding.py +0 -345
  80. packages/realtime_decoding/build/lib/realtime_decoding/trainer.py +0 -54
  81. packages/tmsi/build/lib/TMSiFileFormats/__init__.py +0 -37
  82. packages/tmsi/build/lib/TMSiFileFormats/file_formats/__init__.py +0 -36
  83. packages/tmsi/build/lib/TMSiFileFormats/file_formats/lsl_stream_writer.py +0 -200
  84. packages/tmsi/build/lib/TMSiFileFormats/file_formats/poly5_file_writer.py +0 -496
  85. packages/tmsi/build/lib/TMSiFileFormats/file_formats/poly5_to_edf_converter.py +0 -236
  86. packages/tmsi/build/lib/TMSiFileFormats/file_formats/xdf_file_writer.py +0 -977
  87. packages/tmsi/build/lib/TMSiFileFormats/file_readers/__init__.py +0 -35
  88. packages/tmsi/build/lib/TMSiFileFormats/file_readers/edf_reader.py +0 -116
  89. packages/tmsi/build/lib/TMSiFileFormats/file_readers/poly5reader.py +0 -294
  90. packages/tmsi/build/lib/TMSiFileFormats/file_readers/xdf_reader.py +0 -229
  91. packages/tmsi/build/lib/TMSiFileFormats/file_writer.py +0 -102
  92. packages/tmsi/build/lib/TMSiPlotters/__init__.py +0 -2
  93. packages/tmsi/build/lib/TMSiPlotters/gui/__init__.py +0 -39
  94. packages/tmsi/build/lib/TMSiPlotters/gui/_plotter_gui.py +0 -234
  95. packages/tmsi/build/lib/TMSiPlotters/gui/plotting_gui.py +0 -440
  96. packages/tmsi/build/lib/TMSiPlotters/plotters/__init__.py +0 -44
  97. packages/tmsi/build/lib/TMSiPlotters/plotters/hd_emg_plotter.py +0 -446
  98. packages/tmsi/build/lib/TMSiPlotters/plotters/impedance_plotter.py +0 -589
  99. packages/tmsi/build/lib/TMSiPlotters/plotters/signal_plotter.py +0 -1326
  100. packages/tmsi/build/lib/TMSiSDK/__init__.py +0 -54
  101. packages/tmsi/build/lib/TMSiSDK/device.py +0 -588
  102. packages/tmsi/build/lib/TMSiSDK/devices/__init__.py +0 -34
  103. packages/tmsi/build/lib/TMSiSDK/devices/saga/TMSi_Device_API.py +0 -1764
  104. packages/tmsi/build/lib/TMSiSDK/devices/saga/__init__.py +0 -34
  105. packages/tmsi/build/lib/TMSiSDK/devices/saga/saga_device.py +0 -1366
  106. packages/tmsi/build/lib/TMSiSDK/devices/saga/saga_types.py +0 -520
  107. packages/tmsi/build/lib/TMSiSDK/devices/saga/xml_saga_config.py +0 -165
  108. packages/tmsi/build/lib/TMSiSDK/error.py +0 -95
  109. packages/tmsi/build/lib/TMSiSDK/sample_data.py +0 -63
  110. packages/tmsi/build/lib/TMSiSDK/sample_data_server.py +0 -99
  111. packages/tmsi/build/lib/TMSiSDK/settings.py +0 -45
  112. packages/tmsi/build/lib/TMSiSDK/tmsi_device.py +0 -111
  113. packages/tmsi/build/lib/__init__.py +0 -4
  114. packages/tmsi/build/lib/apex_sdk/__init__.py +0 -34
  115. packages/tmsi/build/lib/apex_sdk/device/__init__.py +0 -41
  116. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_API.py +0 -1009
  117. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_API_enums.py +0 -239
  118. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_API_structures.py +0 -668
  119. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_device.py +0 -1611
  120. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_dongle.py +0 -38
  121. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_event_reader.py +0 -57
  122. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/apex_channel.py +0 -44
  123. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/apex_config.py +0 -150
  124. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/apex_const.py +0 -36
  125. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/apex_impedance_channel.py +0 -48
  126. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/apex_info.py +0 -108
  127. packages/tmsi/build/lib/apex_sdk/device/devices/apex/apex_structures/dongle_info.py +0 -39
  128. packages/tmsi/build/lib/apex_sdk/device/devices/apex/measurements/download_measurement.py +0 -77
  129. packages/tmsi/build/lib/apex_sdk/device/devices/apex/measurements/eeg_measurement.py +0 -150
  130. packages/tmsi/build/lib/apex_sdk/device/devices/apex/measurements/impedance_measurement.py +0 -129
  131. packages/tmsi/build/lib/apex_sdk/device/threads/conversion_thread.py +0 -59
  132. packages/tmsi/build/lib/apex_sdk/device/threads/sampling_thread.py +0 -57
  133. packages/tmsi/build/lib/apex_sdk/device/tmsi_channel.py +0 -83
  134. packages/tmsi/build/lib/apex_sdk/device/tmsi_device.py +0 -201
  135. packages/tmsi/build/lib/apex_sdk/device/tmsi_device_enums.py +0 -103
  136. packages/tmsi/build/lib/apex_sdk/device/tmsi_dongle.py +0 -43
  137. packages/tmsi/build/lib/apex_sdk/device/tmsi_event_reader.py +0 -50
  138. packages/tmsi/build/lib/apex_sdk/device/tmsi_measurement.py +0 -118
  139. packages/tmsi/build/lib/apex_sdk/sample_data_server/__init__.py +0 -33
  140. packages/tmsi/build/lib/apex_sdk/sample_data_server/event_data.py +0 -44
  141. packages/tmsi/build/lib/apex_sdk/sample_data_server/sample_data.py +0 -50
  142. packages/tmsi/build/lib/apex_sdk/sample_data_server/sample_data_server.py +0 -136
  143. packages/tmsi/build/lib/apex_sdk/tmsi_errors/error.py +0 -126
  144. packages/tmsi/build/lib/apex_sdk/tmsi_sdk.py +0 -113
  145. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/apex/apex_structure_generator.py +0 -134
  146. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/decorators.py +0 -60
  147. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/logger_filter.py +0 -42
  148. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/singleton.py +0 -42
  149. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/support_functions.py +0 -72
  150. packages/tmsi/build/lib/apex_sdk/tmsi_utilities/tmsi_logger.py +0 -98
  151. py_neuromodulation-0.0.3.dist-info/RECORD +0 -188
  152. py_neuromodulation-0.0.3.dist-info/top_level.txt +0 -5
  153. tests/__init__.py +0 -0
  154. tests/conftest.py +0 -117
  155. tests/test_all_examples.py +0 -10
  156. tests/test_all_features.py +0 -63
  157. tests/test_bispectra.py +0 -70
  158. tests/test_bursts.py +0 -105
  159. tests/test_feature_sampling_rates.py +0 -143
  160. tests/test_fooof.py +0 -16
  161. tests/test_initalization_offline_stream.py +0 -41
  162. tests/test_multiprocessing.py +0 -58
  163. tests/test_nan_values.py +0 -29
  164. tests/test_nm_filter.py +0 -95
  165. tests/test_nm_resample.py +0 -63
  166. tests/test_normalization_settings.py +0 -146
  167. tests/test_notch_filter.py +0 -31
  168. tests/test_osc_features.py +0 -424
  169. tests/test_preprocessing_filter.py +0 -151
  170. tests/test_rereference.py +0 -171
  171. tests/test_sampling.py +0 -57
  172. tests/test_settings_change_after_init.py +0 -76
  173. tests/test_sharpwave.py +0 -165
  174. tests/test_target_channel_add.py +0 -100
  175. tests/test_timing.py +0 -80
  176. {py_neuromodulation-0.0.3.dist-info → py_neuromodulation-0.0.4.dist-info/licenses}/LICENSE +0 -0
@@ -1,34 +0,0 @@
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- """
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- (c) 2022 Twente Medical Systems International B.V., Oldenzaal The Netherlands
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-
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- Licensed under the Apache License, Version 2.0 (the "License");
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- you may not use this file except in compliance with the License.
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- You may obtain a copy of the License at
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-
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- http://www.apache.org/licenses/LICENSE-2.0
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-
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- Unless required by applicable law or agreed to in writing, software
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- distributed under the License is distributed on an "AS IS" BASIS,
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- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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- See the License for the specific language governing permissions and
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- limitations under the License.
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-
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- ####### # # ##### #
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- # ## ## #
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- # # # # # # #
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- # # # # ##### #
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- # # # # #
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- # # # # #
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- # # # ##### #
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-
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- /**
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- * @file ${__init__.py}
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- * @brief Initialisation of the saga_device directory classes.
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- *
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- */
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-
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-
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- """
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- from .saga_device import SagaDevice
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- from .xml_saga_config import xml_write_config, xml_read_config
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- from . import saga_device, saga_types, xml_saga_config