psychopy 2025.2.4__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (3127) hide show
  1. psychopy/CHANGELOG.txt +3981 -0
  2. psychopy/GIT_SHA +1 -0
  3. psychopy/LICENSE.txt +11 -0
  4. psychopy/LICENSES.txt +55 -0
  5. psychopy/VERSION +1 -0
  6. psychopy/__init__.py +148 -0
  7. psychopy/alerts/__init__.py +65 -0
  8. psychopy/alerts/_alerts.py +224 -0
  9. psychopy/alerts/_errorHandler.py +50 -0
  10. psychopy/alerts/alertsCatalogue/1000.yaml +0 -0
  11. psychopy/alerts/alertsCatalogue/1100.yaml +0 -0
  12. psychopy/alerts/alertsCatalogue/1500.yaml +0 -0
  13. psychopy/alerts/alertsCatalogue/2000.yaml +0 -0
  14. psychopy/alerts/alertsCatalogue/2100.yaml +0 -0
  15. psychopy/alerts/alertsCatalogue/2110.yaml +0 -0
  16. psychopy/alerts/alertsCatalogue/2115.yaml +21 -0
  17. psychopy/alerts/alertsCatalogue/2120.yaml +22 -0
  18. psychopy/alerts/alertsCatalogue/2150.yaml +0 -0
  19. psychopy/alerts/alertsCatalogue/2155.yaml +21 -0
  20. psychopy/alerts/alertsCatalogue/2300.yaml +0 -0
  21. psychopy/alerts/alertsCatalogue/2500.yaml +0 -0
  22. psychopy/alerts/alertsCatalogue/3000.yaml +0 -0
  23. psychopy/alerts/alertsCatalogue/3100.yaml +0 -0
  24. psychopy/alerts/alertsCatalogue/3110.yaml +25 -0
  25. psychopy/alerts/alertsCatalogue/3115.yaml +24 -0
  26. psychopy/alerts/alertsCatalogue/3200.yaml +0 -0
  27. psychopy/alerts/alertsCatalogue/3210.yaml +27 -0
  28. psychopy/alerts/alertsCatalogue/3400.yaml +0 -0
  29. psychopy/alerts/alertsCatalogue/3600.yaml +0 -0
  30. psychopy/alerts/alertsCatalogue/3610.yaml +19 -0
  31. psychopy/alerts/alertsCatalogue/4000.yaml +0 -0
  32. psychopy/alerts/alertsCatalogue/4051.yaml +19 -0
  33. psychopy/alerts/alertsCatalogue/4052.yaml +19 -0
  34. psychopy/alerts/alertsCatalogue/4100.yaml +0 -0
  35. psychopy/alerts/alertsCatalogue/4105.yaml +18 -0
  36. psychopy/alerts/alertsCatalogue/4115.yaml +21 -0
  37. psychopy/alerts/alertsCatalogue/4120.yaml +19 -0
  38. psychopy/alerts/alertsCatalogue/4125.yaml +23 -0
  39. psychopy/alerts/alertsCatalogue/4130.yaml +19 -0
  40. psychopy/alerts/alertsCatalogue/4160.yaml +25 -0
  41. psychopy/alerts/alertsCatalogue/4200.yaml +0 -0
  42. psychopy/alerts/alertsCatalogue/4205.yaml +19 -0
  43. psychopy/alerts/alertsCatalogue/4210.yaml +19 -0
  44. psychopy/alerts/alertsCatalogue/4305.yaml +21 -0
  45. psychopy/alerts/alertsCatalogue/4310.yaml +21 -0
  46. psychopy/alerts/alertsCatalogue/4315.yaml +21 -0
  47. psychopy/alerts/alertsCatalogue/4320.yaml +19 -0
  48. psychopy/alerts/alertsCatalogue/4325.yaml +23 -0
  49. psychopy/alerts/alertsCatalogue/4330.yaml +19 -0
  50. psychopy/alerts/alertsCatalogue/4335.yaml +19 -0
  51. psychopy/alerts/alertsCatalogue/4340.yaml +19 -0
  52. psychopy/alerts/alertsCatalogue/4405.yaml +24 -0
  53. psychopy/alerts/alertsCatalogue/4505.yaml +22 -0
  54. psychopy/alerts/alertsCatalogue/4510.yaml +25 -0
  55. psychopy/alerts/alertsCatalogue/4520.yaml +26 -0
  56. psychopy/alerts/alertsCatalogue/4530.yaml +23 -0
  57. psychopy/alerts/alertsCatalogue/4540.yaml +19 -0
  58. psychopy/alerts/alertsCatalogue/4545.yaml +22 -0
  59. psychopy/alerts/alertsCatalogue/4550.yaml +19 -0
  60. psychopy/alerts/alertsCatalogue/4605.yaml +22 -0
  61. psychopy/alerts/alertsCatalogue/4610.yaml +22 -0
  62. psychopy/alerts/alertsCatalogue/4615.yaml +19 -0
  63. psychopy/alerts/alertsCatalogue/4705.yaml +19 -0
  64. psychopy/alerts/alertsCatalogue/4710.yaml +19 -0
  65. psychopy/alerts/alertsCatalogue/4810.yaml +19 -0
  66. psychopy/alerts/alertsCatalogue/5000.yaml +0 -0
  67. psychopy/alerts/alertsCatalogue/5055.yaml +25 -0
  68. psychopy/alerts/alertsCatalogue/6000.yaml +0 -0
  69. psychopy/alerts/alertsCatalogue/6105.yaml +18 -0
  70. psychopy/alerts/alertsCatalogue/7105.yaml +19 -0
  71. psychopy/alerts/alertsCatalogue/8105.yaml +21 -0
  72. psychopy/alerts/alertsCatalogue/8110.yaml +21 -0
  73. psychopy/alerts/alertsCatalogue/9998.yaml +19 -0
  74. psychopy/alerts/alertsCatalogue/9999.yaml +19 -0
  75. psychopy/alerts/alertsCatalogue/alertCategories.yaml +123 -0
  76. psychopy/alerts/alertsCatalogue/alertTemplate.yaml +19 -0
  77. psychopy/alerts/alertsCatalogue/alertmsg.py +173 -0
  78. psychopy/alerts/alertsCatalogue/generateAlertmsg.py +34 -0
  79. psychopy/alerts/alerttools.py +322 -0
  80. psychopy/app/Resources/README.md +12 -0
  81. psychopy/app/Resources/__init__.py +0 -0
  82. psychopy/app/Resources/betasplash.png +0 -0
  83. psychopy/app/Resources/betasplash@2x.png +0 -0
  84. psychopy/app/Resources/builder.ico +0 -0
  85. psychopy/app/Resources/classic/FlowBottom_CompLeft.png +0 -0
  86. psychopy/app/Resources/classic/FlowBottom_CompRight.png +0 -0
  87. psychopy/app/Resources/classic/FlowTop_CompLeft.png +0 -0
  88. psychopy/app/Resources/classic/FlowTop_CompRight.png +0 -0
  89. psychopy/app/Resources/classic/README.txt +9 -0
  90. psychopy/app/Resources/classic/__init__.py +0 -0
  91. psychopy/app/Resources/classic/_layouts.ai +1138 -1
  92. psychopy/app/Resources/classic/add.png +0 -0
  93. psychopy/app/Resources/classic/add@2x.png +0 -0
  94. psychopy/app/Resources/classic/addExp32.png +0 -0
  95. psychopy/app/Resources/classic/add_many.png +0 -0
  96. psychopy/app/Resources/classic/add_many@2x.png +0 -0
  97. psychopy/app/Resources/classic/alerts.png +0 -0
  98. psychopy/app/Resources/classic/beta.png +0 -0
  99. psychopy/app/Resources/classic/browser.png +0 -0
  100. psychopy/app/Resources/classic/browser@2x.png +0 -0
  101. psychopy/app/Resources/classic/bug16.png +0 -0
  102. psychopy/app/Resources/classic/case.png +0 -0
  103. psychopy/app/Resources/classic/case@2x.png +0 -0
  104. psychopy/app/Resources/classic/circle_mask.png +0 -0
  105. psychopy/app/Resources/classic/circle_mask@2x.png +0 -0
  106. psychopy/app/Resources/classic/clear.png +0 -0
  107. psychopy/app/Resources/classic/clear@2x.png +0 -0
  108. psychopy/app/Resources/classic/coderclass16.png +0 -0
  109. psychopy/app/Resources/classic/coderfunc16.png +0 -0
  110. psychopy/app/Resources/classic/coderimport16.png +0 -0
  111. psychopy/app/Resources/classic/coderjs16.png +0 -0
  112. psychopy/app/Resources/classic/coderpython16.png +0 -0
  113. psychopy/app/Resources/classic/codervar16.png +0 -0
  114. psychopy/app/Resources/classic/cogwindow32.png +0 -0
  115. psychopy/app/Resources/classic/color32.png +0 -0
  116. psychopy/app/Resources/classic/compile32.png +0 -0
  117. psychopy/app/Resources/classic/compile_js.png +0 -0
  118. psychopy/app/Resources/classic/compile_js@2x.png +0 -0
  119. psychopy/app/Resources/classic/compile_py.png +0 -0
  120. psychopy/app/Resources/classic/compile_py@2x.png +0 -0
  121. psychopy/app/Resources/classic/copy16.png +0 -0
  122. psychopy/app/Resources/classic/currentFile.png +0 -0
  123. psychopy/app/Resources/classic/currentFile@2x.png +0 -0
  124. psychopy/app/Resources/classic/delete16.png +0 -0
  125. psychopy/app/Resources/classic/desktop.png +0 -0
  126. psychopy/app/Resources/classic/desktop@2x.png +0 -0
  127. psychopy/app/Resources/classic/devices.png +0 -0
  128. psychopy/app/Resources/classic/devices@2x.png +0 -0
  129. psychopy/app/Resources/classic/dirup16.png +0 -0
  130. psychopy/app/Resources/classic/docclose16.png +0 -0
  131. psychopy/app/Resources/classic/download.png +0 -0
  132. psychopy/app/Resources/classic/edit.png +0 -0
  133. psychopy/app/Resources/classic/edit@2x.png +0 -0
  134. psychopy/app/Resources/classic/editbtn.png +0 -0
  135. psychopy/app/Resources/classic/editbtn16.png +0 -0
  136. psychopy/app/Resources/classic/editbtn16@2x.png +0 -0
  137. psychopy/app/Resources/classic/editbtn@2x.png +0 -0
  138. psychopy/app/Resources/classic/email.png +0 -0
  139. psychopy/app/Resources/classic/email@2x.png +0 -0
  140. psychopy/app/Resources/classic/experiment.png +0 -0
  141. psychopy/app/Resources/classic/experiment@2x.png +0 -0
  142. psychopy/app/Resources/classic/expsettings.png +0 -0
  143. psychopy/app/Resources/classic/expsettings@2x.png +0 -0
  144. psychopy/app/Resources/classic/file.png +0 -0
  145. psychopy/app/Resources/classic/file@2x.png +0 -0
  146. psychopy/app/Resources/classic/fileaudio.png +0 -0
  147. psychopy/app/Resources/classic/fileaudio@2x.png +0 -0
  148. psychopy/app/Resources/classic/filecss.png +0 -0
  149. psychopy/app/Resources/classic/filecss@2x.png +0 -0
  150. psychopy/app/Resources/classic/filecsv.png +0 -0
  151. psychopy/app/Resources/classic/filecsv@2x.png +0 -0
  152. psychopy/app/Resources/classic/filedesign.png +0 -0
  153. psychopy/app/Resources/classic/filedesign@2x.png +0 -0
  154. psychopy/app/Resources/classic/filefont.png +0 -0
  155. psychopy/app/Resources/classic/filefont@2x.png +0 -0
  156. psychopy/app/Resources/classic/filegit.png +0 -0
  157. psychopy/app/Resources/classic/filegit@2x.png +0 -0
  158. psychopy/app/Resources/classic/filehtml.png +0 -0
  159. psychopy/app/Resources/classic/filehtml@2x.png +0 -0
  160. psychopy/app/Resources/classic/fileimage.png +0 -0
  161. psychopy/app/Resources/classic/fileimage@2x.png +0 -0
  162. psychopy/app/Resources/classic/fileinfo.png +0 -0
  163. psychopy/app/Resources/classic/fileinfo@2x.png +0 -0
  164. psychopy/app/Resources/classic/filejs.png +0 -0
  165. psychopy/app/Resources/classic/filejs@2x.png +0 -0
  166. psychopy/app/Resources/classic/filejson.png +0 -0
  167. psychopy/app/Resources/classic/filejson@2x.png +0 -0
  168. psychopy/app/Resources/classic/filenew.png +0 -0
  169. psychopy/app/Resources/classic/filenew32.png +0 -0
  170. psychopy/app/Resources/classic/filenew@2x.png +0 -0
  171. psychopy/app/Resources/classic/fileopen.png +0 -0
  172. psychopy/app/Resources/classic/fileopen32.png +0 -0
  173. psychopy/app/Resources/classic/fileopen@2x.png +0 -0
  174. psychopy/app/Resources/classic/filepkg.png +0 -0
  175. psychopy/app/Resources/classic/filepkg@2x.png +0 -0
  176. psychopy/app/Resources/classic/filepsyexp.png +0 -0
  177. psychopy/app/Resources/classic/filepsyexp@2x.png +0 -0
  178. psychopy/app/Resources/classic/filepy.png +0 -0
  179. psychopy/app/Resources/classic/filepy@2x.png +0 -0
  180. psychopy/app/Resources/classic/filesave.png +0 -0
  181. psychopy/app/Resources/classic/filesave32.png +0 -0
  182. psychopy/app/Resources/classic/filesave@2x.png +0 -0
  183. psychopy/app/Resources/classic/filesaveas.png +0 -0
  184. psychopy/app/Resources/classic/filesaveas32.png +0 -0
  185. psychopy/app/Resources/classic/filesaveas@2x.png +0 -0
  186. psychopy/app/Resources/classic/filetxt.png +0 -0
  187. psychopy/app/Resources/classic/filetxt@2x.png +0 -0
  188. psychopy/app/Resources/classic/fileunknown.png +0 -0
  189. psychopy/app/Resources/classic/fileunknown@2x.png +0 -0
  190. psychopy/app/Resources/classic/filevideo.png +0 -0
  191. psychopy/app/Resources/classic/filevideo@2x.png +0 -0
  192. psychopy/app/Resources/classic/filter.png +0 -0
  193. psychopy/app/Resources/classic/filter@2x.png +0 -0
  194. psychopy/app/Resources/classic/find.png +0 -0
  195. psychopy/app/Resources/classic/find@2x.png +0 -0
  196. psychopy/app/Resources/classic/folder-open16.png +0 -0
  197. psychopy/app/Resources/classic/folder16.png +0 -0
  198. psychopy/app/Resources/classic/foldernew16.png +0 -0
  199. psychopy/app/Resources/classic/fork.png +0 -0
  200. psychopy/app/Resources/classic/fork@2x.png +0 -0
  201. psychopy/app/Resources/classic/github.png +0 -0
  202. psychopy/app/Resources/classic/github@2x.png +0 -0
  203. psychopy/app/Resources/classic/globe.png +0 -0
  204. psychopy/app/Resources/classic/globe@2x.png +0 -0
  205. psychopy/app/Resources/classic/globe_bug.png +0 -0
  206. psychopy/app/Resources/classic/globe_bug@2x.png +0 -0
  207. psychopy/app/Resources/classic/globe_greensync.png +0 -0
  208. psychopy/app/Resources/classic/globe_greensync@2x.png +0 -0
  209. psychopy/app/Resources/classic/globe_info.png +0 -0
  210. psychopy/app/Resources/classic/globe_info@2x.png +0 -0
  211. psychopy/app/Resources/classic/globe_magnifier.png +0 -0
  212. psychopy/app/Resources/classic/globe_magnifier@2x.png +0 -0
  213. psychopy/app/Resources/classic/globe_run.png +0 -0
  214. psychopy/app/Resources/classic/globe_run@2x.png +0 -0
  215. psychopy/app/Resources/classic/globe_user.png +0 -0
  216. psychopy/app/Resources/classic/globe_user@2x.png +0 -0
  217. psychopy/app/Resources/classic/goto16.png +0 -0
  218. psychopy/app/Resources/classic/greendot.png +0 -0
  219. psychopy/app/Resources/classic/greendot@2x.png +0 -0
  220. psychopy/app/Resources/classic/greenglobe.png +0 -0
  221. psychopy/app/Resources/classic/greenglobe@2x.png +0 -0
  222. psychopy/app/Resources/classic/greenglobe_bug.png +0 -0
  223. psychopy/app/Resources/classic/greenglobe_bug@2x.png +0 -0
  224. psychopy/app/Resources/classic/greenglobe_greensync.png +0 -0
  225. psychopy/app/Resources/classic/greenglobe_greensync@2x.png +0 -0
  226. psychopy/app/Resources/classic/greenglobe_info.png +0 -0
  227. psychopy/app/Resources/classic/greenglobe_info@2x.png +0 -0
  228. psychopy/app/Resources/classic/greenglobe_magnifier.png +0 -0
  229. psychopy/app/Resources/classic/greenglobe_magnifier@2x.png +0 -0
  230. psychopy/app/Resources/classic/greenglobe_run.png +0 -0
  231. psychopy/app/Resources/classic/greenglobe_run@2x.png +0 -0
  232. psychopy/app/Resources/classic/greenglobe_user.png +0 -0
  233. psychopy/app/Resources/classic/greenglobe_user@2x.png +0 -0
  234. psychopy/app/Resources/classic/greydot.png +0 -0
  235. psychopy/app/Resources/classic/greydot@2x.png +0 -0
  236. psychopy/app/Resources/classic/greytick.png +0 -0
  237. psychopy/app/Resources/classic/greytick@2x.png +0 -0
  238. psychopy/app/Resources/classic/invalid_img.png +0 -0
  239. psychopy/app/Resources/classic/jsPilot.png +0 -0
  240. psychopy/app/Resources/classic/jsPilot@2x.png +0 -0
  241. psychopy/app/Resources/classic/jsRun.png +0 -0
  242. psychopy/app/Resources/classic/jsRun@2x.png +0 -0
  243. psychopy/app/Resources/classic/libroot.png +0 -0
  244. psychopy/app/Resources/classic/libroot@2x.png +0 -0
  245. psychopy/app/Resources/classic/loop.png +0 -0
  246. psychopy/app/Resources/classic/loop@2x.png +0 -0
  247. psychopy/app/Resources/classic/monitor16.png +0 -0
  248. psychopy/app/Resources/classic/monitors.png +0 -0
  249. psychopy/app/Resources/classic/monitors16.png +0 -0
  250. psychopy/app/Resources/classic/monitors32.png +0 -0
  251. psychopy/app/Resources/classic/monitors@2x.png +0 -0
  252. psychopy/app/Resources/classic/orangedot.png +0 -0
  253. psychopy/app/Resources/classic/orangedot@2x.png +0 -0
  254. psychopy/app/Resources/classic/pavlovia.png +0 -0
  255. psychopy/app/Resources/classic/pavlovia16.png +0 -0
  256. psychopy/app/Resources/classic/pavlovia16@2x.png +0 -0
  257. psychopy/app/Resources/classic/pavlovia@2x.png +0 -0
  258. psychopy/app/Resources/classic/pavsync.png +0 -0
  259. psychopy/app/Resources/classic/pavsync@2x.png +0 -0
  260. psychopy/app/Resources/classic/person_off.png +0 -0
  261. psychopy/app/Resources/classic/person_off@2x.png +0 -0
  262. psychopy/app/Resources/classic/person_on.png +0 -0
  263. psychopy/app/Resources/classic/person_on@2x.png +0 -0
  264. psychopy/app/Resources/classic/photometer.png +0 -0
  265. psychopy/app/Resources/classic/photometer@2x.png +0 -0
  266. psychopy/app/Resources/classic/plugin16.png +0 -0
  267. psychopy/app/Resources/classic/plugin16@2x.png +0 -0
  268. psychopy/app/Resources/classic/plugins32.png +0 -0
  269. psychopy/app/Resources/classic/plus.png +0 -0
  270. psychopy/app/Resources/classic/plus@2x.png +0 -0
  271. psychopy/app/Resources/classic/preferences-app.png +0 -0
  272. psychopy/app/Resources/classic/preferences-app48.png +0 -0
  273. psychopy/app/Resources/classic/preferences-app@2x.png +0 -0
  274. psychopy/app/Resources/classic/preferences-conn.png +0 -0
  275. psychopy/app/Resources/classic/preferences-conn48.png +0 -0
  276. psychopy/app/Resources/classic/preferences-conn@2x.png +0 -0
  277. psychopy/app/Resources/classic/preferences-debug.png +0 -0
  278. psychopy/app/Resources/classic/preferences-debug@2x.png +0 -0
  279. psychopy/app/Resources/classic/preferences-general.png +0 -0
  280. psychopy/app/Resources/classic/preferences-general48.png +0 -0
  281. psychopy/app/Resources/classic/preferences-general@2x.png +0 -0
  282. psychopy/app/Resources/classic/preferences-hardware.png +0 -0
  283. psychopy/app/Resources/classic/preferences-hardware48.png +0 -0
  284. psychopy/app/Resources/classic/preferences-hardware@2x.png +0 -0
  285. psychopy/app/Resources/classic/preferences-keyboard.png +0 -0
  286. psychopy/app/Resources/classic/preferences-keyboard48.png +0 -0
  287. psychopy/app/Resources/classic/preferences-keyboard@2x.png +0 -0
  288. psychopy/app/Resources/classic/preferences-pilot.png +0 -0
  289. psychopy/app/Resources/classic/preferences-pilot@2x.png +0 -0
  290. psychopy/app/Resources/classic/preferences32.png +0 -0
  291. psychopy/app/Resources/classic/pyPilot.png +0 -0
  292. psychopy/app/Resources/classic/pyPilot@2x.png +0 -0
  293. psychopy/app/Resources/classic/pyRun.png +0 -0
  294. psychopy/app/Resources/classic/pyRun@2x.png +0 -0
  295. psychopy/app/Resources/classic/reddot.png +0 -0
  296. psychopy/app/Resources/classic/reddot@2x.png +0 -0
  297. psychopy/app/Resources/classic/redglobe.png +0 -0
  298. psychopy/app/Resources/classic/redglobe@2x.png +0 -0
  299. psychopy/app/Resources/classic/redglobe_bug.png +0 -0
  300. psychopy/app/Resources/classic/redglobe_bug@2x.png +0 -0
  301. psychopy/app/Resources/classic/redglobe_greensync.png +0 -0
  302. psychopy/app/Resources/classic/redglobe_greensync@2x.png +0 -0
  303. psychopy/app/Resources/classic/redglobe_info.png +0 -0
  304. psychopy/app/Resources/classic/redglobe_info@2x.png +0 -0
  305. psychopy/app/Resources/classic/redglobe_magnifier.png +0 -0
  306. psychopy/app/Resources/classic/redglobe_magnifier@2x.png +0 -0
  307. psychopy/app/Resources/classic/redglobe_run.png +0 -0
  308. psychopy/app/Resources/classic/redglobe_run@2x.png +0 -0
  309. psychopy/app/Resources/classic/redglobe_user.png +0 -0
  310. psychopy/app/Resources/classic/redglobe_user@2x.png +0 -0
  311. psychopy/app/Resources/classic/redo.png +0 -0
  312. psychopy/app/Resources/classic/redo32.png +0 -0
  313. psychopy/app/Resources/classic/redo@2x.png +0 -0
  314. psychopy/app/Resources/classic/regex.png +0 -0
  315. psychopy/app/Resources/classic/regex@2x.png +0 -0
  316. psychopy/app/Resources/classic/removeExp32.png +0 -0
  317. psychopy/app/Resources/classic/rename16.png +0 -0
  318. psychopy/app/Resources/classic/restart.png +0 -0
  319. psychopy/app/Resources/classic/restart@2x.png +0 -0
  320. psychopy/app/Resources/classic/run.png +0 -0
  321. psychopy/app/Resources/classic/run@2x.png +0 -0
  322. psychopy/app/Resources/classic/runner.png +0 -0
  323. psychopy/app/Resources/classic/runner@2x.png +0 -0
  324. psychopy/app/Resources/classic/runnerPilot.png +0 -0
  325. psychopy/app/Resources/classic/runnerPilot@2x.png +0 -0
  326. psychopy/app/Resources/classic/savebtn.png +0 -0
  327. psychopy/app/Resources/classic/savebtn16.png +0 -0
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  3084. psychopy/visual/movies/frame.py +258 -0
  3085. psychopy/visual/movies/metadata.py +242 -0
  3086. psychopy/visual/movies/players/_base.py +364 -0
  3087. psychopy/visual/nnlvs.py +830 -0
  3088. psychopy/visual/noise.py +32 -0
  3089. psychopy/visual/panorama.py +313 -0
  3090. psychopy/visual/patch.py +21 -0
  3091. psychopy/visual/pie.py +237 -0
  3092. psychopy/visual/polygon.py +226 -0
  3093. psychopy/visual/progress.py +313 -0
  3094. psychopy/visual/radial.py +29 -0
  3095. psychopy/visual/ratingscale.py +18 -0
  3096. psychopy/visual/rect.py +195 -0
  3097. psychopy/visual/rift.py +2660 -0
  3098. psychopy/visual/roi.py +141 -0
  3099. psychopy/visual/secondorder.py +27 -0
  3100. psychopy/visual/shaders.py +787 -0
  3101. psychopy/visual/shape.py +897 -0
  3102. psychopy/visual/simpleimage.py +303 -0
  3103. psychopy/visual/slider.py +1222 -0
  3104. psychopy/visual/stim3d.py +2109 -0
  3105. psychopy/visual/target.py +278 -0
  3106. psychopy/visual/text.py +769 -0
  3107. psychopy/visual/textbox/__init__.py +1280 -0
  3108. psychopy/visual/textbox/fontmanager.py +574 -0
  3109. psychopy/visual/textbox/parsedtext.py +317 -0
  3110. psychopy/visual/textbox/textgrid.py +278 -0
  3111. psychopy/visual/textbox/textureatlas.py +248 -0
  3112. psychopy/visual/textbox2/__init__.py +4 -0
  3113. psychopy/visual/textbox2/textbox2.py +1970 -0
  3114. psychopy/visual/vlcmoviestim.py +1294 -0
  3115. psychopy/visual/window.py +3910 -0
  3116. psychopy/visual/windowframepack.py +86 -0
  3117. psychopy/visual/windowwarp.py +457 -0
  3118. psychopy/voicekey/__init__.py +56 -0
  3119. psychopy/voicekey/labjack_vks.py +9 -0
  3120. psychopy/voicekey/parallel_vks.py +9 -0
  3121. psychopy/voicekey/vk_tools.py +131 -0
  3122. psychopy/web.py +289 -0
  3123. psychopy-2025.2.4.dist-info/METADATA +160 -0
  3124. psychopy-2025.2.4.dist-info/RECORD +3127 -0
  3125. psychopy-2025.2.4.dist-info/WHEEL +4 -0
  3126. psychopy-2025.2.4.dist-info/entry_points.txt +5 -0
  3127. psychopy-2025.2.4.dist-info/licenses/LICENSE +674 -0
@@ -0,0 +1,2270 @@
1
+ #!/usr/bin/env python
2
+ # -*- coding: utf-8 -*-
3
+
4
+ import sys
5
+ import os
6
+ import pickle
7
+ import copy
8
+ import warnings
9
+ import numpy as np
10
+ from packaging.version import Version
11
+
12
+ import psychopy
13
+ from psychopy import logging
14
+ from psychopy.tools.filetools import openOutputFile, genDelimiter
15
+ from psychopy.tools.fileerrortools import handleFileCollision
16
+ from psychopy.contrib.quest import QuestObject
17
+ from psychopy.contrib.psi import PsiObject
18
+ from .base import _BaseTrialHandler, _ComparisonMixin
19
+ from .utils import _getExcelCellName
20
+
21
+ try:
22
+ from collections.abc import Iterable
23
+ except ImportError:
24
+ from collections import Iterable
25
+
26
+ try:
27
+ # import openpyxl
28
+ import openpyxl
29
+ if Version(openpyxl.__version__) >= Version('2.4.0'):
30
+ # openpyxl moved get_column_letter to utils.cell
31
+ from openpyxl.utils.cell import get_column_letter
32
+ else:
33
+ from openpyxl.cell import get_column_letter
34
+ from openpyxl.reader.excel import load_workbook
35
+ haveOpenpyxl = True
36
+ except ImportError:
37
+ haveOpenpyxl = False
38
+
39
+
40
+ class StairHandler(_BaseTrialHandler):
41
+ """Class to handle smoothly the selection of the next trial
42
+ and report current values etc.
43
+ Calls to next() will fetch the next object given to this
44
+ handler, according to the method specified.
45
+
46
+ See ``Demos >> ExperimentalControl >> JND_staircase_exp.py``
47
+
48
+ The staircase will terminate when *nTrials* AND *nReversals* have
49
+ been exceeded. If *stepSizes* was an array and has been exceeded
50
+ before nTrials is exceeded then the staircase will continue
51
+ to reverse.
52
+
53
+ *nUp* and *nDown* are always considered as 1 until the first reversal
54
+ is reached. The values entered as arguments are then used.
55
+
56
+ """
57
+
58
+ def __init__(
59
+ self,
60
+ startVal,
61
+ nReversals=None,
62
+ stepSizes=4, # dB stepsize
63
+ nTrials=0,
64
+ nUp=1,
65
+ nDown=3, # correct responses before stim goes down
66
+ applyInitialRule=True,
67
+ extraInfo=None,
68
+ method='2AFC',
69
+ stepType='db',
70
+ minVal=None,
71
+ maxVal=None,
72
+ originPath=None,
73
+ isTrials=True,
74
+ name='',
75
+ autoLog=True,
76
+ **kwargs
77
+ ):
78
+ """
79
+ :Parameters:
80
+
81
+ startVal:
82
+ The initial value for the staircase.
83
+
84
+ nReversals:
85
+ The minimum number of reversals permitted.
86
+ If `stepSizes` is a list, but the minimum number of
87
+ reversals to perform, `nReversals`, is less than the
88
+ length of this list, PsychoPy will automatically increase
89
+ the minimum number of reversals and emit a warning.
90
+ This minimum number of reversals is always set to be
91
+ greater than 0.
92
+
93
+ stepSizes:
94
+ The size of steps as a single value or a list (or array).
95
+ For a single value the step size is fixed. For an array or
96
+ list the step size will progress to the next entry
97
+ at each reversal.
98
+
99
+ nTrials:
100
+ The minimum number of trials to be conducted. If the
101
+ staircase has not reached the required number of reversals
102
+ then it will continue.
103
+
104
+ nUp:
105
+ The number of 'incorrect' (or 0) responses before the
106
+ staircase level increases.
107
+
108
+ nDown:
109
+ The number of 'correct' (or 1) responses before the
110
+ staircase level decreases.
111
+
112
+ applyInitialRule : bool
113
+ Whether to apply a 1-up/1-down rule until the first reversal
114
+ point (if `True`), before switching to the specified up/down
115
+ rule.
116
+
117
+ extraInfo:
118
+ A dictionary (typically) that will be stored along with
119
+ collected data using
120
+ :func:`~psychopy.data.StairHandler.saveAsPickle` or
121
+ :func:`~psychopy.data.StairHandler.saveAsText` methods.
122
+
123
+ method:
124
+ Not used and may be deprecated in future releases.
125
+
126
+ stepType: *'db'*, 'lin', 'log'
127
+ The type of steps that should be taken each time. 'lin'
128
+ will simply add or subtract that amount each step, 'db'
129
+ and 'log' will step by a certain number of decibels or
130
+ log units (note that this will prevent your value ever
131
+ reaching zero or less)
132
+
133
+ minVal: *None*, or a number
134
+ The smallest legal value for the staircase, which can be
135
+ used to prevent it reaching impossible contrast values,
136
+ for instance.
137
+
138
+ maxVal: *None*, or a number
139
+ The largest legal value for the staircase, which can be
140
+ used to prevent it reaching impossible contrast values,
141
+ for instance.
142
+
143
+ isTrials : bool
144
+ Is this controlling trials, or created for another purpose (e.g. iterating a
145
+ stimulus within a trial)?
146
+
147
+ Additional keyword arguments will be ignored.
148
+
149
+ :Notes:
150
+
151
+ The additional keyword arguments `**kwargs` might for example be
152
+ passed by the `MultiStairHandler`, which expects a `label` keyword
153
+ for each staircase. These parameters are to be ignored by the
154
+ StairHandler.
155
+
156
+ """
157
+ self.name = name
158
+ self.startVal = startVal
159
+ self.nUp = nUp
160
+ self.nDown = nDown
161
+ self.applyInitialRule = applyInitialRule
162
+ self.extraInfo = extraInfo
163
+ self.method = method
164
+ self.stepType = stepType
165
+ self.isTrials = isTrials
166
+
167
+ try:
168
+ self.stepSizes = list(stepSizes)
169
+ except TypeError:
170
+ # stepSizes is not array-like / iterable, i.e., a scalar.
171
+ self.stepSizes = [stepSizes]
172
+
173
+ self._variableStep = True if len(self.stepSizes) > 1 else False
174
+ self.stepSizeCurrent = self.stepSizes[0]
175
+
176
+ if nReversals is None:
177
+ self.nReversals = len(self.stepSizes)
178
+ elif len(self.stepSizes) > nReversals:
179
+ msg = ('Increasing number of minimum required reversals to the '
180
+ 'number of step sizes, (%i).' % len(self.stepSizes))
181
+ logging.warn(msg)
182
+ self.nReversals = len(self.stepSizes)
183
+ else:
184
+ self.nReversals = nReversals
185
+
186
+ # to terminate the nTrials must be exceeded and either
187
+ self.nTrials = nTrials
188
+ self.finished = False
189
+ self.thisTrialN = -1
190
+ # a dict of lists where each should have the same length as the main
191
+ # data:
192
+ self.otherData = {}
193
+ self.data = []
194
+ self.intensities = []
195
+ self.reversalPoints = []
196
+ self.reversalIntensities = []
197
+ # initially it goes down but on every step:
198
+ self.currentDirection = 'start'
199
+ # correct since last stim change (minus are incorrect):
200
+ self.correctCounter = 0
201
+ self.intensity = self.startVal
202
+ self.minVal = minVal
203
+ self.maxVal = maxVal
204
+ self.autoLog = autoLog
205
+ # a flag for the 1-up 1-down initial rule:
206
+ self.initialRule = False
207
+
208
+ # self.originPath and self.origin (the contents of the origin file)
209
+ self.originPath, self.origin = self.getOriginPathAndFile(originPath)
210
+ self._exp = None # the experiment handler that owns me!
211
+
212
+ def __iter__(self):
213
+ return self
214
+
215
+ @property
216
+ def intensity(self):
217
+ """The intensity (level) of the current staircase"""
218
+ return self._nextIntensity
219
+
220
+ @intensity.setter
221
+ def intensity(self, intensity):
222
+ """The intensity (level) of the current staircase"""
223
+ self._nextIntensity = intensity
224
+
225
+ def addResponse(self, result, intensity=None):
226
+ """Add a 1 or 0 to signify a correct / detected or
227
+ incorrect / missed trial.
228
+
229
+ This is essential to advance the staircase to a new intensity level!
230
+
231
+ Supplying an `intensity` value here indicates that you did not use
232
+ the recommended intensity in your last trial and the staircase will
233
+ replace its recorded value with the one you supplied here.
234
+ """
235
+ self.data.append(result)
236
+
237
+ # if needed replace the existing intensity with this custom one
238
+ if intensity != None:
239
+ self.intensities.pop()
240
+ self.intensities.append(intensity)
241
+
242
+ # increment the counter of correct scores
243
+ if result == 1:
244
+ if len(self.data) > 1 and self.data[-2] == result:
245
+ # increment if on a run
246
+ self.correctCounter += 1
247
+ else:
248
+ # or reset
249
+ self.correctCounter = 1
250
+ else:
251
+ if len(self.data) > 1 and self.data[-2] == result:
252
+ # increment if on a run
253
+ self.correctCounter -= 1
254
+ else:
255
+ # or reset
256
+ self.correctCounter = -1
257
+
258
+ # add the current data to experiment if poss
259
+ if self.getExp() is not None: # update the experiment handler too
260
+ self.getExp().addData(self.name + ".response", result)
261
+ self.calculateNextIntensity()
262
+
263
+ def addOtherData(self, dataName, value):
264
+ """Add additional data to the handler, to be tracked alongside
265
+ the result data but not affecting the value of the staircase
266
+ """
267
+ if not dataName in self.otherData: # init the list
268
+ if self.thisTrialN > 0:
269
+ # might have run trials already
270
+ self.otherData[dataName] = [None] * (self.thisTrialN - 1)
271
+ else:
272
+ self.otherData[dataName] = []
273
+ # then add current value
274
+ self.otherData[dataName].append(value)
275
+ # add the current data to experiment if poss
276
+ if self.getExp() != None: # update the experiment handler too
277
+ self.getExp().addData(dataName, value)
278
+
279
+ def addData(self, result, intensity=None):
280
+ """Deprecated since 1.79.00: This function name was ambiguous.
281
+ Please use one of these instead:
282
+
283
+ * .addResponse(result, intensity)
284
+ * .addOtherData('dataName', value')
285
+
286
+ """
287
+ self.addResponse(result, intensity)
288
+
289
+ def calculateNextIntensity(self):
290
+ """Based on current intensity, counter of correct responses, and
291
+ current direction.
292
+ """
293
+
294
+ if not self.reversalIntensities and self.applyInitialRule:
295
+ # always using a 1-down, 1-up rule initially
296
+ if self.data[-1] == 1: # last answer correct
297
+ # got it right
298
+ if self.currentDirection == 'up':
299
+ reversal = True
300
+ else:
301
+ # direction is 'down' or 'start'
302
+ reversal = False
303
+ self.currentDirection = 'down'
304
+ else:
305
+ # got it wrong
306
+ if self.currentDirection == 'down':
307
+ reversal = True
308
+ else:
309
+ # direction is 'up' or 'start'
310
+ reversal = False
311
+ # now:
312
+ self.currentDirection = 'up'
313
+ elif self.correctCounter >= self.nDown:
314
+ # n right, time to go down!
315
+ # 'start' covers `applyInitialRule=False`.
316
+ if self.currentDirection not in ['start', 'down']:
317
+ reversal = True
318
+ else:
319
+ reversal = False
320
+ self.currentDirection = 'down'
321
+ elif self.correctCounter <= -self.nUp:
322
+ # n wrong, time to go up!
323
+ # note current direction
324
+ # 'start' covers `applyInitialRule=False`.
325
+ if self.currentDirection not in ['start', 'up']:
326
+ reversal = True
327
+ else:
328
+ reversal = False
329
+ self.currentDirection = 'up'
330
+ else:
331
+ # same as previous trial
332
+ reversal = False
333
+
334
+ # add reversal info
335
+ if reversal:
336
+ self.reversalPoints.append(self.thisTrialN)
337
+ if not self.reversalIntensities and self.applyInitialRule:
338
+ self.initialRule = True
339
+ self.reversalIntensities.append(self.intensities[-1])
340
+
341
+ # test if we're done
342
+ if (len(self.reversalIntensities) >= self.nReversals and
343
+ len(self.intensities) >= self.nTrials):
344
+ self.finished = True
345
+
346
+ # new step size if necessary
347
+ if reversal and self._variableStep:
348
+ if len(self.reversalIntensities) >= len(self.stepSizes):
349
+ # we've gone beyond the list of step sizes
350
+ # so just use the last one
351
+ self.stepSizeCurrent = self.stepSizes[-1]
352
+ else:
353
+ _sz = len(self.reversalIntensities)
354
+ self.stepSizeCurrent = self.stepSizes[_sz]
355
+
356
+ # apply new step size
357
+ if ((not self.reversalIntensities or self.initialRule) and
358
+ self.applyInitialRule):
359
+ self.initialRule = False # reset the flag
360
+ if self.data[-1] == 1:
361
+ self._intensityDec()
362
+ else:
363
+ self._intensityInc()
364
+ elif self.correctCounter >= self.nDown:
365
+ # n right, so going down
366
+ self._intensityDec()
367
+ elif self.correctCounter <= -self.nUp:
368
+ # n wrong, so going up
369
+ self._intensityInc()
370
+
371
+ def __next__(self):
372
+ """Advances to next trial and returns it.
373
+ Updates attributes; `thisTrial`, `thisTrialN` and `thisIndex`.
374
+
375
+ If the trials have ended, calling this method will raise a
376
+ StopIteration error. This can be handled with code such as::
377
+
378
+ staircase = data.StairHandler(.......)
379
+ for eachTrial in staircase: # automatically stops when done
380
+ # do stuff
381
+
382
+ or::
383
+
384
+ staircase = data.StairHandler(.......)
385
+ while True: # ie forever
386
+ try:
387
+ thisTrial = staircase.next()
388
+ except StopIteration: # we got a StopIteration error
389
+ break # break out of the forever loop
390
+ # do stuff here for the trial
391
+
392
+ """
393
+ if not self.finished:
394
+ # check that all 'otherData' is aligned with current trialN
395
+ for key in self.otherData:
396
+ while len(self.otherData[key]) < self.thisTrialN:
397
+ self.otherData[key].append(None)
398
+ # update pointer for next trial
399
+ self.thisTrialN += 1
400
+ self.intensities.append(self._nextIntensity)
401
+ return self._nextIntensity
402
+ else:
403
+ self._terminate()
404
+
405
+ next = __next__ # allows user to call without a loop `val = trials.next()`
406
+
407
+ def _intensityInc(self):
408
+ """increment the current intensity and reset counter
409
+ """
410
+ if self.stepType == 'db':
411
+ self._nextIntensity *= 10.0**(self.stepSizeCurrent/20.0)
412
+ elif self.stepType == 'log':
413
+ self._nextIntensity *= 10.0**self.stepSizeCurrent
414
+ elif self.stepType == 'lin':
415
+ self._nextIntensity += self.stepSizeCurrent
416
+ # check we haven't gone out of the legal range
417
+ if (self.maxVal is not None) and (self._nextIntensity > self.maxVal):
418
+ self._nextIntensity = self.maxVal
419
+ self.correctCounter = 0
420
+
421
+ def _intensityDec(self):
422
+ """decrement the current intensity and reset counter
423
+ """
424
+ if self.stepType == 'db':
425
+ self._nextIntensity /= 10.0**(self.stepSizeCurrent/20.0)
426
+ if self.stepType == 'log':
427
+ self._nextIntensity /= 10.0**self.stepSizeCurrent
428
+ elif self.stepType == 'lin':
429
+ self._nextIntensity -= self.stepSizeCurrent
430
+ self.correctCounter = 0
431
+ # check we haven't gone out of the legal range
432
+ if (self.minVal is not None) and (self._nextIntensity < self.minVal):
433
+ self._nextIntensity = self.minVal
434
+
435
+ def saveAsText(self, fileName,
436
+ delim=None,
437
+ matrixOnly=False,
438
+ fileCollisionMethod='rename',
439
+ encoding='utf-8-sig'):
440
+ """Write a text file with the data
441
+
442
+ :Parameters:
443
+
444
+ fileName: a string
445
+ The name of the file, including path if needed. The extension
446
+ `.tsv` will be added if not included.
447
+
448
+ delim: a string
449
+ the delimitter to be used (e.g. '\t' for tab-delimitted,
450
+ ',' for csv files)
451
+
452
+ matrixOnly: True/False
453
+ If True, prevents the output of the `extraInfo` provided
454
+ at initialisation.
455
+
456
+ fileCollisionMethod:
457
+ Collision method passed to
458
+ :func:`~psychopy.tools.fileerrortools.handleFileCollision`
459
+
460
+ encoding:
461
+ The encoding to use when saving a the file.
462
+ Defaults to `utf-8-sig`.
463
+
464
+ """
465
+
466
+ if self.thisTrialN < 1:
467
+ if self.autoLog:
468
+ logging.debug('StairHandler.saveAsText called but no '
469
+ 'trials completed. Nothing saved')
470
+ return -1
471
+
472
+ # set default delimiter if none given
473
+ if delim is None:
474
+ delim = genDelimiter(fileName)
475
+
476
+ # create the file or send to stdout
477
+ f = openOutputFile(
478
+ fileName, append=False,
479
+ fileCollisionMethod=fileCollisionMethod, encoding=encoding)
480
+
481
+ # write the data
482
+ reversalStr = str(self.reversalIntensities)
483
+ reversalStr = reversalStr.replace(',', delim)
484
+ reversalStr = reversalStr.replace('[', '')
485
+ reversalStr = reversalStr.replace(']', '')
486
+ f.write('\nreversalIntensities=\t%s\n' % reversalStr)
487
+
488
+ reversalPts = str(self.reversalPoints)
489
+ reversalPts = reversalPts.replace(',', delim)
490
+ reversalPts = reversalPts.replace('[', '')
491
+ reversalPts = reversalPts.replace(']', '')
492
+ f.write('reversalIndices=\t%s\n' % reversalPts)
493
+
494
+ rawIntens = str(self.intensities)
495
+ rawIntens = rawIntens.replace(',', delim)
496
+ rawIntens = rawIntens.replace('[', '')
497
+ rawIntens = rawIntens.replace(']', '')
498
+ f.write('\nintensities=\t%s\n' % rawIntens)
499
+
500
+ responses = str(self.data)
501
+ responses = responses.replace(',', delim)
502
+ responses = responses.replace('[', '')
503
+ responses = responses.replace(']', '')
504
+ f.write('responses=\t%s\n' % responses)
505
+
506
+ # add self.extraInfo
507
+ if self.extraInfo is not None and not matrixOnly:
508
+ strInfo = str(self.extraInfo)
509
+ # dict begins and ends with {} - remove
510
+ # strInfo.replace('{','')
511
+ # strInfo = strInfo.replace('}','')
512
+ strInfo = strInfo[1:-1]
513
+ # separate value from keyname
514
+ strInfo = strInfo.replace(strInfo, ': ', ':\n')
515
+ # separate values from each other
516
+ strInfo = strInfo.replace(',', '\n')
517
+ strInfo = strInfo.replace('array([ ', '')
518
+ strInfo = strInfo.replace('])', '')
519
+
520
+ f.write('\n%s\n' % strInfo)
521
+
522
+ f.write("\n")
523
+ if f != sys.stdout:
524
+ f.close()
525
+ if self.autoLog:
526
+ logging.info('saved data to %s' % f.name)
527
+
528
+ def saveAsExcel(self, fileName, sheetName='data',
529
+ matrixOnly=False, appendFile=True,
530
+ fileCollisionMethod='rename'):
531
+ """Save a summary data file in Excel OpenXML format workbook
532
+ (:term:`xlsx`) for processing in most spreadsheet packages.
533
+ This format is compatible with versions of Excel (2007 or greater)
534
+ and and with OpenOffice (>=3.0).
535
+
536
+ It has the advantage over the simpler text files
537
+ (see :func:`TrialHandler.saveAsText()` ) that data can be stored
538
+ in multiple named sheets within the file. So you could have a
539
+ single file named after your experiment and then have one worksheet
540
+ for each participant. Or you could have one file for each participant
541
+ and then multiple sheets for repeated sessions etc.
542
+
543
+ The file extension `.xlsx` will be added if not given already.
544
+
545
+ The file will contain a set of values specifying the staircase level
546
+ ('intensity') at each reversal, a list of reversal indices
547
+ (trial numbers), the raw staircase / intensity level on *every*
548
+ trial and the corresponding responses of the participant on every
549
+ trial.
550
+
551
+ :Parameters:
552
+
553
+ fileName: string
554
+ the name of the file to create or append. Can include
555
+ relative or absolute path.
556
+
557
+ sheetName: string
558
+ the name of the worksheet within the file
559
+
560
+ matrixOnly: True or False
561
+ If set to True then only the data itself will be output
562
+ (no additional info)
563
+
564
+ appendFile: True or False
565
+ If False any existing file with this name will be
566
+ overwritten. If True then a new worksheet will be appended.
567
+ If a worksheet already exists with that name a number will
568
+ be added to make it unique.
569
+
570
+ fileCollisionMethod: string
571
+ Collision method passed to
572
+ :func:`~psychopy.tools.fileerrortools.handleFileCollision`
573
+ This is ignored if ``appendFile`` is ``True``.
574
+
575
+ """
576
+
577
+ if self.thisTrialN < 1:
578
+ if self.autoLog:
579
+ logging.debug('StairHandler.saveAsExcel called but no '
580
+ 'trials completed. Nothing saved')
581
+ return -1
582
+ # NB this was based on the limited documentation for openpyxl v1.0
583
+ if not haveOpenpyxl:
584
+ raise ImportError('openpyxl is required for saving files in '
585
+ 'Excel (xlsx) format, but was not found.')
586
+ # return -1
587
+
588
+ # import necessary subpackages - they are small so won't matter to do
589
+ # it here
590
+ from openpyxl.workbook import Workbook
591
+ from openpyxl.reader.excel import load_workbook
592
+
593
+ if not fileName.endswith('.xlsx'):
594
+ fileName += '.xlsx'
595
+ # create or load the file
596
+ if appendFile and os.path.isfile(fileName):
597
+ wb = load_workbook(fileName)
598
+ newWorkbook = False
599
+ else:
600
+ if not appendFile:
601
+ # the file exists but we're not appending, will be overwritten
602
+ fileName = handleFileCollision(fileName,
603
+ fileCollisionMethod)
604
+ wb = Workbook()
605
+ wb.properties.creator = 'PsychoPy' + psychopy.__version__
606
+ newWorkbook = True
607
+
608
+ if newWorkbook:
609
+ ws = wb.worksheets[0]
610
+ ws.title = sheetName
611
+ else:
612
+ ws = wb.create_sheet()
613
+ ws.title = sheetName
614
+
615
+ # write the data
616
+ # reversals data
617
+ ws['A1'] = 'Reversal Intensities'
618
+ ws['B1'] = 'Reversal Indices'
619
+ for revN, revIntens in enumerate(self.reversalIntensities):
620
+ ws.cell(column=1, row=revN+2,
621
+ value=u"{}".format(revIntens))
622
+ ws.cell(column=2, row=revN+2,
623
+ value=u"{}".format(self.reversalPoints[revN]))
624
+
625
+ # trials data
626
+ ws['C1'] = 'All Intensities'
627
+ ws['D1'] = 'All Responses'
628
+ for intenN, intensity in enumerate(self.intensities):
629
+ ws.cell(column=3, row=intenN+2,
630
+ value=u"{}".format(intensity))
631
+ ws.cell(column=4, row=intenN+2,
632
+ value=u"{}".format(self.data[intenN]))
633
+
634
+ # add other data
635
+ col = 5
636
+ if self.otherData is not None:
637
+ # for varName in self.otherData:
638
+ for key, val in list(self.otherData.items()):
639
+ ws.cell(column=col, row=1,
640
+ value=u"{}".format(key))
641
+ for oDatN in range(len(self.otherData[key])):
642
+ ws.cell(column=col, row=oDatN+2,
643
+ value=u"{}".format(self.otherData[key][oDatN]))
644
+ col += 1
645
+
646
+ # add self.extraInfo
647
+ if self.extraInfo is not None and not matrixOnly:
648
+ ws.cell(column=col, row=1,
649
+ value='extraInfo')
650
+ rowN = 2
651
+ for key, val in list(self.extraInfo.items()):
652
+ ws.cell(column=col, row=rowN,
653
+ value=u"{}:".format(key))
654
+ _cell = _getExcelCellName(col=col+1, row=rowN)
655
+ ws.cell(column=col+2, row=rowN+1,
656
+ value=u"{}".format(val))
657
+ rowN += 1
658
+
659
+
660
+ wb.save(filename=fileName)
661
+ if self.autoLog:
662
+ logging.info('saved data to %s' % fileName)
663
+
664
+ def saveAsPickle(self, fileName, fileCollisionMethod='rename'):
665
+ """Basically just saves a copy of self (with data) to a pickle file.
666
+
667
+ This can be reloaded if necessary and further analyses carried out.
668
+
669
+ :Parameters:
670
+
671
+ fileCollisionMethod: Collision method passed to
672
+ :func:`~psychopy.tools.fileerrortools.handleFileCollision`
673
+
674
+ """
675
+ if self.thisTrialN < 1:
676
+ if self.autoLog:
677
+ logging.debug('StairHandler.saveAsPickle called but no '
678
+ 'trials completed. Nothing saved')
679
+ return -1
680
+
681
+ # otherwise use default location
682
+ if not fileName.endswith('.psydat'):
683
+ fileName += '.psydat'
684
+
685
+ with openOutputFile(fileName=fileName, append=False,
686
+ fileCollisionMethod=fileCollisionMethod) as f:
687
+ pickle.dump(self, f)
688
+
689
+ if (fileName is not None) and (fileName != 'stdout'):
690
+ logging.info('saved data to %s' % f.name)
691
+
692
+
693
+ class QuestObject_(QuestObject, _ComparisonMixin):
694
+ """A QuestObject that implements the == and != operators.
695
+ """
696
+ pass
697
+
698
+
699
+ class QuestHandler(StairHandler):
700
+ r"""Class that implements the Quest algorithm for quick measurement of
701
+ psychophysical thresholds.
702
+
703
+ Uses Andrew Straw's `QUEST <http://www.visionegg.org/Quest>`_, which is a
704
+ Python port of Denis Pelli's Matlab code.
705
+
706
+ Measures threshold using a Weibull psychometric function. Currently, it is
707
+ not possible to use a different psychometric function.
708
+
709
+ The Weibull psychometric function is given by the formula
710
+
711
+ :math:`\Psi(x) = \delta \gamma + (1 - \delta) [1 - (1 - \gamma)\, \exp(-10^{\\beta (x - T + \epsilon)})]`
712
+
713
+ Here, :math:`x` is an intensity or a contrast (in log10 units), and :math:`T` is estimated threshold.
714
+
715
+ Quest internally shifts the psychometric function such that intensity at the user-specified
716
+ threshold performance level ``pThreshold`` (e.g., 50% in a yes-no or 75% in a 2-AFC task) is euqal to 0.
717
+ The parameter :math:`\epsilon` is responsible for this shift, and is determined automatically based on the
718
+ specified ``pThreshold`` value. It is the parameter Watson & Pelli (1983) introduced to perform measurements
719
+ at the "optimal sweat factor". Assuming your ``QuestHandler`` instance is called ``q``, you can retrieve this
720
+ value via ``q.epsilon``.
721
+
722
+ **Example**::
723
+
724
+ # setup display/window
725
+ ...
726
+ # create stimulus
727
+ stimulus = visual.RadialStim(win=win, tex='sinXsin', size=1,
728
+ pos=[0,0], units='deg')
729
+ ...
730
+ # create staircase object
731
+ # trying to find out the contrast where subject gets 63% correct
732
+ # if wanted to do a 2AFC then the defaults for pThreshold and gamma
733
+ # are good. As start value, we'll use 50% contrast, with SD = 20%
734
+ staircase = data.QuestHandler(0.5, 0.2,
735
+ pThreshold=0.63, gamma=0.01,
736
+ nTrials=20, minVal=0, maxVal=1)
737
+ ...
738
+ while thisContrast in staircase:
739
+ # setup stimulus
740
+ stimulus.setContrast(thisContrast)
741
+ stimulus.draw()
742
+ win.flip()
743
+ core.wait(0.5)
744
+ # get response
745
+ ...
746
+ # inform QUEST of the response, needed to calculate next level
747
+ staircase.addResponse(thisResp)
748
+ ...
749
+ # can now access 1 of 3 suggested threshold levels
750
+ staircase.mean()
751
+ staircase.mode()
752
+ staircase.quantile(0.5) # gets the median
753
+
754
+ """
755
+
756
+ def __init__(self,
757
+ startVal,
758
+ startValSd,
759
+ pThreshold=0.82,
760
+ nTrials=None,
761
+ stopInterval=None,
762
+ method='quantile',
763
+ beta=3.5,
764
+ delta=0.01,
765
+ gamma=0.5,
766
+ grain=0.01,
767
+ range=None,
768
+ extraInfo=None,
769
+ minVal=None,
770
+ maxVal=None,
771
+ staircase=None,
772
+ originPath=None,
773
+ name='',
774
+ autoLog=True,
775
+ **kwargs):
776
+ """
777
+ Typical values for pThreshold are:
778
+ * 0.82 which is equivalent to a 3 up 1 down standard staircase
779
+ * 0.63 which is equivalent to a 1 up 1 down standard staircase
780
+ (and might want gamma=0.01)
781
+
782
+ The variable(s) nTrials and/or stopSd must be specified.
783
+
784
+ `beta`, `delta`, and `gamma` are the parameters of the Weibull
785
+ psychometric function.
786
+
787
+ :Parameters:
788
+
789
+ startVal:
790
+ Prior threshold estimate or your initial guess threshold.
791
+
792
+ startValSd:
793
+ Standard deviation of your starting guess threshold.
794
+ Be generous with the sd as QUEST will have trouble finding
795
+ the true threshold if it's more than one sd from your
796
+ initial guess.
797
+
798
+ pThreshold
799
+ Your threshold criterion expressed as probability of
800
+ response==1. An intensity offset is introduced into the
801
+ psychometric function so that the threshold (i.e.,
802
+ the midpoint of the table) yields pThreshold.
803
+
804
+ nTrials: *None* or a number
805
+ The maximum number of trials to be conducted.
806
+
807
+ stopInterval: *None* or a number
808
+ The minimum 5-95% confidence interval required in the
809
+ threshold estimate before stopping. If both this and
810
+ nTrials is specified, whichever happens first will
811
+ determine when Quest will stop.
812
+
813
+ method: *'quantile'*, 'mean', 'mode'
814
+ The method used to determine the next threshold to test.
815
+ If you want to get a specific threshold level at the end
816
+ of your staircasing, please use the quantile, mean, and
817
+ mode methods directly.
818
+
819
+ beta: *3.5* or a number
820
+ Controls the steepness of the psychometric function.
821
+
822
+ delta: *0.01* or a number
823
+ The fraction of trials on which the observer presses blindly.
824
+
825
+ gamma: *0.5* or a number
826
+ The fraction of trials that will generate response 1 when
827
+ intensity=-Inf.
828
+
829
+ grain: *0.01* or a number
830
+ The quantization of the internal table.
831
+
832
+ range: *None*, or a number
833
+ The intensity difference between the largest and smallest
834
+ intensity that the internal table can store. This interval
835
+ will be centered on the initial guess tGuess. QUEST assumes
836
+ that intensities outside of this range have zero prior
837
+ probability (i.e., they are impossible).
838
+
839
+ extraInfo:
840
+ A dictionary (typically) that will be stored along with
841
+ collected data using
842
+ :func:`~psychopy.data.StairHandler.saveAsPickle` or
843
+ :func:`~psychopy.data.StairHandler.saveAsText` methods.
844
+
845
+ minVal: *None*, or a number
846
+ The smallest legal value for the staircase, which can be
847
+ used to prevent it reaching impossible contrast values,
848
+ for instance.
849
+
850
+ maxVal: *None*, or a number
851
+ The largest legal value for the staircase, which can be
852
+ used to prevent it reaching impossible contrast values,
853
+ for instance.
854
+
855
+ staircase: *None* or StairHandler
856
+ Can supply a staircase object with intensities and results.
857
+ Might be useful to give the quest algorithm more information
858
+ if you have it. You can also call the importData function
859
+ directly.
860
+
861
+ Additional keyword arguments will be ignored.
862
+
863
+ :Notes:
864
+
865
+ The additional keyword arguments `**kwargs` might for example be
866
+ passed by the `MultiStairHandler`, which expects a `label` keyword
867
+ for each staircase. These parameters are to be ignored by the
868
+ StairHandler.
869
+
870
+ """
871
+ StairHandler.__init__(
872
+ self, startVal, nTrials=nTrials, extraInfo=extraInfo,
873
+ method=method, stepType='lin', minVal=minVal,
874
+ maxVal=maxVal, name=name, autoLog=autoLog)
875
+
876
+ self.startVal = startVal
877
+ self.startValSd = startValSd
878
+ self.pThreshold = pThreshold
879
+ self.stopInterval = stopInterval
880
+ # NB there is also _nextIntensity
881
+ self._questNextIntensity = startVal
882
+ self._range = range
883
+
884
+ # Create Quest object
885
+ self._quest = QuestObject_(
886
+ startVal, startValSd, pThreshold, beta, delta, gamma,
887
+ grain=grain, range=self._range)
888
+
889
+ # Import any old staircase data
890
+ if staircase is not None:
891
+ self.importData(staircase.intensities, staircase.data)
892
+ # store the origin file and its path
893
+ self.originPath, self.origin = self.getOriginPathAndFile(originPath)
894
+ self._exp = None
895
+ self.autoLog = autoLog
896
+
897
+ # NB we inherit self.intensity from StairHandler
898
+
899
+ @property
900
+ def beta(self):
901
+ return self._quest.beta
902
+
903
+ @property
904
+ def gamma(self):
905
+ return self._quest.gamma
906
+
907
+ @property
908
+ def delta(self):
909
+ return self._quest.delta
910
+ @property
911
+ def epsilon(self):
912
+ return self._quest.xThreshold
913
+
914
+ @property
915
+ def grain(self):
916
+ return self._quest.grain
917
+
918
+ @property
919
+ def range(self):
920
+ return self._range
921
+
922
+ def addResponse(self, result, intensity=None):
923
+ """Add a 1 or 0 to signify a correct / detected or
924
+ incorrect / missed trial
925
+
926
+ Supplying an `intensity` value here indicates that you did not use the
927
+ recommended intensity in your last trial and the staircase will
928
+ replace its recorded value with the one you supplied here.
929
+ """
930
+ # Process user supplied intensity
931
+ if intensity is None:
932
+ intensity = self._questNextIntensity
933
+ else:
934
+ # Update the intensity.
935
+ #
936
+ # During the first trial, self.intensities will be of length 0,
937
+ # so pop() would not work.
938
+ if len(self.intensities) != 0:
939
+ self.intensities.pop() # remove the auto-generated one
940
+ self.intensities.append(intensity)
941
+ # Update quest
942
+ self._quest.update(intensity, result)
943
+ # Update other things
944
+ self.data.append(result)
945
+ # add the current data to experiment if poss
946
+ if self.getExp() != None: # update the experiment handler too
947
+ self.getExp().addData(self.name + ".response", result)
948
+
949
+ self._checkFinished()
950
+ if not self.finished:
951
+ self.calculateNextIntensity()
952
+
953
+ def importData(self, intensities, results):
954
+ """import some data which wasn't previously given to the quest
955
+ algorithm
956
+ """
957
+ # NOT SURE ABOUT CLASS TO USE FOR RAISING ERROR
958
+ if len(intensities) != len(results):
959
+ raise AttributeError("length of intensities and results input "
960
+ "must be the same")
961
+ self.incTrials(len(intensities))
962
+ for intensity, result in zip(intensities, results):
963
+ try:
964
+ next(self)
965
+ self.addResponse(result, intensity)
966
+ except StopIteration:
967
+ # would get a stop iteration if stopInterval set
968
+ pass # TODO: might want to check if nTrials is still good
969
+
970
+ def calculateNextIntensity(self):
971
+ """based on current intensity and counter of correct responses
972
+ """
973
+ self._intensity()
974
+ # Check we haven't gone out of the legal range
975
+ if self.maxVal is not None and self._nextIntensity > self.maxVal:
976
+ self._nextIntensity = self.maxVal
977
+ elif self.minVal is not None and self._nextIntensity < self.minVal:
978
+ self._nextIntensity = self.minVal
979
+ self._questNextIntensity = self._nextIntensity
980
+
981
+ def _intensity(self):
982
+ """assigns the next intensity level"""
983
+ if self.method == 'mean':
984
+ self._questNextIntensity = self._quest.mean()
985
+ elif self.method == 'mode':
986
+ self._questNextIntensity = self._quest.mode()[0]
987
+ elif self.method == 'quantile':
988
+ self._questNextIntensity = self._quest.quantile()
989
+ else:
990
+ raise TypeError(f"Requested method for QUEST: {self.method} is not a valid method. Please use mean, mode or quantile")
991
+ self._nextIntensity = self._questNextIntensity
992
+
993
+ def mean(self):
994
+ """mean of Quest posterior pdf
995
+ """
996
+ return self._quest.mean()
997
+
998
+ def sd(self):
999
+ """standard deviation of Quest posterior pdf
1000
+ """
1001
+ return self._quest.sd()
1002
+
1003
+ def mode(self):
1004
+ """mode of Quest posterior pdf
1005
+ """
1006
+ return self._quest.mode()[0]
1007
+
1008
+ def quantile(self, p=None):
1009
+ """quantile of Quest posterior pdf
1010
+ """
1011
+ return self._quest.quantile(quantileOrder=p)
1012
+
1013
+ def confInterval(self, getDifference=False):
1014
+ """
1015
+ Return estimate for the 5%--95% confidence interval (CI).
1016
+
1017
+ :Parameters:
1018
+
1019
+ getDifference (bool)
1020
+ If ``True``, return the width of the confidence interval
1021
+ (95% - 5% percentiles). If ``False``, return an NumPy array
1022
+ with estimates for the 5% and 95% boundaries.
1023
+
1024
+ :Returns:
1025
+
1026
+ scalar or array of length 2.
1027
+ """
1028
+ interval = [self.quantile(0.05), self.quantile(0.95)]
1029
+ if getDifference:
1030
+ return abs(interval[0] - interval[1])
1031
+ else:
1032
+ return interval
1033
+
1034
+ def incTrials(self, nNewTrials):
1035
+ """increase maximum number of trials
1036
+ Updates attribute: `nTrials`
1037
+ """
1038
+ self.nTrials += nNewTrials
1039
+
1040
+ def simulate(self, tActual):
1041
+ """returns a simulated user response to the next intensity level
1042
+ presented by Quest, need to supply the actual threshold level
1043
+ """
1044
+ # Current estimated intensity level
1045
+ if self.method == 'mean':
1046
+ tTest = self._quest.mean()
1047
+ elif self.method == 'mode':
1048
+ tTest = self._quest.mode()
1049
+ elif self.method == 'quantile':
1050
+ tTest = self._quest.quantile()
1051
+ return self._quest.simulate(tTest, tActual)
1052
+
1053
+ def __next__(self):
1054
+ """Advances to next trial and returns it.
1055
+ Updates attributes; `thisTrial`, `thisTrialN`, `thisIndex`,
1056
+ `finished`, `intensities`
1057
+
1058
+ If the trials have ended, calling this method will raise a
1059
+ StopIteration error. This can be handled with code such as::
1060
+
1061
+ staircase = data.QuestHandler(.......)
1062
+ for eachTrial in staircase: # automatically stops when done
1063
+ # do stuff
1064
+
1065
+ or::
1066
+
1067
+ staircase = data.QuestHandler(.......)
1068
+ while True: # i.e. forever
1069
+ try:
1070
+ thisTrial = staircase.next()
1071
+ except StopIteration: # we got a StopIteration error
1072
+ break # break out of the forever loop
1073
+ # do stuff here for the trial
1074
+ """
1075
+ if self.finished == False:
1076
+ # update pointer for next trial
1077
+ self.thisTrialN += 1
1078
+ self.intensities.append(self._nextIntensity)
1079
+ return self._nextIntensity
1080
+ else:
1081
+ self._terminate()
1082
+
1083
+ next = __next__ # allows user to call without a loop `val = trials.next()`
1084
+
1085
+ def _checkFinished(self):
1086
+ """checks if we are finished
1087
+ Updates attribute: `finished`
1088
+ """
1089
+ if self.nTrials is not None and len(self.intensities) >= self.nTrials:
1090
+ self.finished = True
1091
+ elif (self.stopInterval is not None and
1092
+ self.confInterval(True) < self.stopInterval):
1093
+ self.finished = True
1094
+ else:
1095
+ self.finished = False
1096
+
1097
+
1098
+ class PsiObject_(PsiObject, _ComparisonMixin):
1099
+ """A PsiObject that implements the == and != operators.
1100
+ """
1101
+ pass
1102
+
1103
+
1104
+ class PsiHandler(StairHandler):
1105
+ """Handler to implement the "Psi" adaptive psychophysical method
1106
+ (Kontsevich & Tyler, 1999).
1107
+
1108
+ This implementation assumes the form of the psychometric function
1109
+ to be a cumulative Gaussian. Psi estimates the two free parameters
1110
+ of the psychometric function, the location (alpha) and slope (beta),
1111
+ using Bayes' rule and grid approximation of the posterior distribution.
1112
+ It chooses stimuli to present by minimizing the entropy of this grid.
1113
+ Because this grid is represented internally as a 4-D array, one must
1114
+ choose the intensity, alpha, and beta ranges carefully so as to avoid
1115
+ a Memory Error. Maximum likelihood is used to estimate Lambda, the most
1116
+ likely location/slope pair. Because Psi estimates the entire
1117
+ psychometric function, any threshold defined on the function may be
1118
+ estimated once Lambda is determined.
1119
+
1120
+ It is advised that Lambda estimates are examined after completion of
1121
+ the Psi procedure. If the estimated alpha or beta values equal your
1122
+ specified search bounds, then the search range most likely did not
1123
+ contain the true value. In this situation the procedure should be
1124
+ repeated with appropriately adjusted bounds.
1125
+
1126
+ Because Psi is a Bayesian method, it can be initialized with a prior
1127
+ from existing research. A function to save the posterior over Lambda
1128
+ as a Numpy binary file is included.
1129
+
1130
+ Kontsevich & Tyler (1999) specify their psychometric function in terms
1131
+ of d'. PsiHandler avoids this and treats all parameters with respect
1132
+ to stimulus intensity. Specifically, the forms of the psychometric
1133
+ function assumed for Yes/No and Two Alternative Forced Choice (2AFC)
1134
+ are, respectively:
1135
+
1136
+ _normCdf = norm.cdf(x, mean=alpha, sd=beta)
1137
+ Y(x) = .5 * delta + (1 - delta) * _normCdf
1138
+
1139
+ Y(x) = .5 * delta + (1 - delta) * (.5 + .5 * _normCdf)
1140
+ """
1141
+
1142
+ def __init__(self,
1143
+ nTrials,
1144
+ intensRange, alphaRange, betaRange,
1145
+ intensPrecision, alphaPrecision, betaPrecision,
1146
+ delta,
1147
+ stepType='lin',
1148
+ expectedMin=0.5,
1149
+ prior=None,
1150
+ fromFile=False,
1151
+ extraInfo=None,
1152
+ name=''):
1153
+ """Initializes the handler and creates an internal Psi Object for
1154
+ grid approximation.
1155
+
1156
+ :Parameters:
1157
+
1158
+ nTrials (int)
1159
+ The number of trials to run.
1160
+
1161
+ intensRange (list)
1162
+ Two element list containing the (inclusive) endpoints of
1163
+ the stimuli intensity range.
1164
+
1165
+ alphaRange (list)
1166
+ Two element list containing the (inclusive) endpoints of
1167
+ the alpha (location parameter) range.
1168
+
1169
+ betaRange (list)
1170
+ Two element list containing the (inclusive) endpoints of
1171
+ the beta (slope parameter) range.
1172
+
1173
+ intensPrecision (float or int)
1174
+ If stepType == 'lin', this specifies the step size of the
1175
+ stimuli intensity range. If stepType == 'log', this specifies
1176
+ the number of steps in the stimuli intensity range.
1177
+
1178
+ alphaPrecision (float)
1179
+ The step size of the alpha (location parameter) range.
1180
+
1181
+ betaPrecision (float)
1182
+ The step size of the beta (slope parameter) range.
1183
+
1184
+ delta (float)
1185
+ The guess rate.
1186
+
1187
+ stepType (str)
1188
+ The type of steps to be used when constructing the stimuli
1189
+ intensity range. If 'lin' then evenly spaced steps are used.
1190
+ If 'log' then logarithmically spaced steps are used.
1191
+ Defaults to 'lin'.
1192
+
1193
+ expectedMin (float)
1194
+ The expected lower asymptote of the psychometric function
1195
+ (PMF).
1196
+
1197
+ For a Yes/No task, the PMF usually extends across the
1198
+ interval [0, 1]; here, `expectedMin` should be set to `0`.
1199
+
1200
+ For a 2-AFC task, the PMF spreads out across [0.5, 1.0].
1201
+ Therefore, `expectedMin` should be set to `0.5` in this
1202
+ case, and the 2-AFC psychometric function described above
1203
+ going to be is used.
1204
+
1205
+ Currently, only Yes/No and 2-AFC designs are supported.
1206
+
1207
+ Defaults to 0.5, or a 2-AFC task.
1208
+
1209
+ prior (numpy ndarray or str)
1210
+ Optional prior distribution with which to initialize the
1211
+ Psi Object. This can either be a numpy ndarray object or
1212
+ the path to a numpy binary file (.npy) containing the ndarray.
1213
+
1214
+ fromFile (str)
1215
+ Flag specifying whether prior is a file pathname or not.
1216
+
1217
+ extraInfo (dict)
1218
+ Optional dictionary object used in PsychoPy's built-in
1219
+ logging system.
1220
+
1221
+ name (str)
1222
+ Optional name for the PsiHandler used in PsychoPy's built-in
1223
+ logging system.
1224
+
1225
+ :Raises:
1226
+
1227
+ NotImplementedError
1228
+ If the supplied `minVal` parameter implies an experimental
1229
+ design other than Yes/No or 2-AFC.
1230
+
1231
+ """
1232
+ if expectedMin not in [0, 0.5]:
1233
+ raise NotImplementedError(
1234
+ 'Currently, only Yes/No and 2-AFC designs are '
1235
+ 'supported. Please specify either `expectedMin=0` '
1236
+ '(Yes/No) or `expectedMin=0.5` (2-AFC).')
1237
+
1238
+ StairHandler.__init__(
1239
+ self, startVal=None, nTrials=nTrials, extraInfo=extraInfo,
1240
+ stepType=stepType, minVal=intensRange[0],
1241
+ maxVal=intensRange[1], name=name
1242
+ )
1243
+
1244
+ # Create Psi object
1245
+ if prior is not None and fromFile:
1246
+ try:
1247
+ prior = np.load(prior)
1248
+ except IOError:
1249
+ logging.warning("The specified pickle file could not be "
1250
+ "read. Using a uniform prior instead.")
1251
+ prior = None
1252
+
1253
+ twoAFC = True if expectedMin == 0.5 else False
1254
+ self._psi = PsiObject_(
1255
+ intensRange, alphaRange, betaRange, intensPrecision,
1256
+ alphaPrecision, betaPrecision, delta=delta,
1257
+ stepType=stepType, TwoAFC=twoAFC, prior=prior)
1258
+
1259
+ self._psi.update(None)
1260
+
1261
+ def addResponse(self, result, intensity=None):
1262
+ """Add a 1 or 0 to signify a correct / detected or
1263
+ incorrect / missed trial. Supplying an `intensity` value here
1264
+ indicates that you did not use the
1265
+ recommended intensity in your last trial and the staircase will
1266
+ replace its recorded value with the one you supplied here.
1267
+ """
1268
+ self.data.append(result)
1269
+
1270
+ # if needed replace the existing intensity with this custom one
1271
+ if intensity is not None:
1272
+ self.intensities.pop()
1273
+ self.intensities.append(intensity)
1274
+ # add the current data to experiment if possible
1275
+ if self.getExp() is not None:
1276
+ # update the experiment handler too
1277
+ self.getExp().addData(self.name + ".response", result)
1278
+ self._psi.update(result)
1279
+
1280
+ def __next__(self):
1281
+ """Advances to next trial and returns it.
1282
+ """
1283
+ self._checkFinished()
1284
+ if self.finished == False:
1285
+ # update pointer for next trial
1286
+ self.thisTrialN += 1
1287
+ self.intensities.append(self._psi.nextIntensity)
1288
+ return self._psi.nextIntensity
1289
+ else:
1290
+ self._terminate()
1291
+
1292
+ next = __next__ # allows user to call without a loop `val = trials.next()`
1293
+
1294
+ def _checkFinished(self):
1295
+ """checks if we are finished.
1296
+ Updates attribute: `finished`
1297
+ """
1298
+ if self.nTrials is not None and len(self.intensities) >= self.nTrials:
1299
+ self.finished = True
1300
+ else:
1301
+ self.finished = False
1302
+
1303
+ def estimateLambda(self):
1304
+ """Returns a tuple of (location, slope)
1305
+ """
1306
+ return self._psi.estimateLambda()
1307
+
1308
+ def estimateThreshold(self, thresh, lamb=None):
1309
+ """Returns an intensity estimate for the provided probability.
1310
+
1311
+ The optional argument 'lamb' allows thresholds to be estimated
1312
+ without having to recompute the maximum likelihood lambda.
1313
+ """
1314
+ if lamb is not None:
1315
+ try:
1316
+ if len(lamb) != 2:
1317
+ msg = ("Invalid user-specified lambda pair. A "
1318
+ "new estimate of lambda will be computed.")
1319
+ warnings.warn(msg, SyntaxWarning)
1320
+ lamb = None
1321
+ except TypeError:
1322
+ msg = ("Invalid user-specified lambda pair. A new "
1323
+ "estimate of lambda will be computed.")
1324
+ warnings.warn(msg, SyntaxWarning)
1325
+ lamb = None
1326
+ return self._psi.estimateThreshold(thresh, lamb)
1327
+
1328
+ def savePosterior(self, fileName, fileCollisionMethod='rename'):
1329
+ """Saves the posterior array over probLambda as a pickle file
1330
+ with the specified name.
1331
+
1332
+ Parameters
1333
+ ----------
1334
+ fileCollisionMethod : string
1335
+ Collision method passed to :func:`~psychopy.tools.fileerrortools.handleFileCollision`
1336
+
1337
+ """
1338
+ try:
1339
+ if os.path.exists(fileName):
1340
+ fileName = handleFileCollision(
1341
+ fileName,
1342
+ fileCollisionMethod=fileCollisionMethod
1343
+ )
1344
+ self._psi.savePosterior(fileName)
1345
+ except IOError:
1346
+ warnings.warn("An error occurred while trying to save the "
1347
+ "posterior array. Continuing without saving...")
1348
+
1349
+
1350
+ class QuestPlusHandler(StairHandler):
1351
+ def __init__(self,
1352
+ nTrials,
1353
+ intensityVals, thresholdVals, slopeVals,
1354
+ lowerAsymptoteVals, lapseRateVals,
1355
+ responseVals=('Yes', 'No'), prior=None,
1356
+ startIntensity=None,
1357
+ psychometricFunc='weibull', stimScale='log10',
1358
+ stimSelectionMethod='minEntropy',
1359
+ stimSelectionOptions=None, paramEstimationMethod='mean',
1360
+ extraInfo=None, name='', label='', **kwargs):
1361
+ """
1362
+ QUEST+ implementation. Currently only supports parameter estimation of
1363
+ a Weibull-shaped psychometric function.
1364
+
1365
+ The parameter estimates can be retrieved via the `.paramEstimate`
1366
+ attribute, which returns a dictionary whose keys correspond to the
1367
+ names of the estimated parameters (i.e., `QuestPlusHandler.paramEstimate['threshold']`
1368
+ will provide the threshold estimate). Retrieval of the marginal posterior distributions works
1369
+ similarly: they can be accessed via the `.posterior` dictionary.
1370
+
1371
+ Parameters
1372
+ ----------
1373
+ nTrials : int
1374
+ Number of trials to run.
1375
+
1376
+ intensityVals : collection of floats
1377
+ The complete set of possible stimulus levels. Note that the
1378
+ stimulus levels are not necessarily limited to intensities (as the
1379
+ name of this parameter implies), but they could also be contrasts,
1380
+ durations, weights, etc.
1381
+
1382
+ thresholdVals : float or collection of floats
1383
+ The complete set of possible threshold values.
1384
+
1385
+ slopeVals : float or collection of floats
1386
+ The complete set of possible slope values.
1387
+
1388
+ lowerAsymptoteVals : float or collection of floats
1389
+ The complete set of possible values of the lower asymptote. This
1390
+ corresponds to false-alarm rates in yes-no tasks, and to the
1391
+ guessing rate in n-AFC tasks. Therefore, when performing an n-AFC
1392
+ experiment, the collection should consists of a single value only
1393
+ (e.g., `[0.5]` for 2-AFC, `[0.33]` for 3-AFC, `[0.25]` for 4-AFC,
1394
+ etc.).
1395
+
1396
+ lapseRateVals : float or collection of floats
1397
+ The complete set of possible lapse rate values. The lapse rate
1398
+ defines the upper asymptote of the psychometric function, which
1399
+ will be at `1 - lapse rate`.
1400
+
1401
+ responseVals : collection
1402
+ The complete set of possible response outcomes. Currently, only
1403
+ two outcomes are supported: the first element must correspond to
1404
+ a successful response / stimulus detection, and the second one to
1405
+ an unsuccessful or incorrect response. For example, in a yes-no
1406
+ task, one would use `['Yes', 'No']`, and in an n-AFC task,
1407
+ `['Correct', 'Incorrect']`; or, alternatively, the less verbose
1408
+ `[1, 0]` in both cases.
1409
+
1410
+ prior : dict of floats
1411
+ The prior probabilities to assign to the parameter values. The
1412
+ dictionary keys correspond to the respective parameters:
1413
+ ``threshold``, ``slope``, ``lowerAsymptote``, ``lapseRate``.
1414
+
1415
+ startIntensity : float
1416
+ The very first intensity (or stimulus level) to present.
1417
+
1418
+ psychometricFunc : {'weibull'}
1419
+ The psychometric function to fit. Currently, only the Weibull
1420
+ function is supported.
1421
+
1422
+ stimScale : {'log10', 'dB', 'linear'}
1423
+ The scale on which the stimulus intensities (or stimulus levels)
1424
+ are provided. Currently supported are the decadic logarithm,
1425
+ `log10`; decibels, `dB`; and a linear scale, `linear`.
1426
+
1427
+ stimSelectionMethod : {'minEntropy', 'minNEntropy'}
1428
+ How to select the next stimulus. `minEntropy` will select the
1429
+ stimulus that will minimize the expected entropy. `minNEntropy`
1430
+ will randomly pick pick a stimulus from the set of stimuli that
1431
+ will produce the smallest, 2nd-smallest, ..., N-smallest entropy.
1432
+ This can be used to ensure some variation in the stimulus selection
1433
+ (and subsequent presentation) procedure. The number `N` will then
1434
+ have to be specified via the `stimSelectionOption` parameter.
1435
+
1436
+ stimSelectionOptions : dict
1437
+ This parameter further controls how to select the next stimulus in
1438
+ case `stimSelectionMethod=minNEntropy`.
1439
+ The dictionary supports two keys:
1440
+ `N` and `maxConsecutiveReps`.
1441
+ `N` defines the number of "best" stimuli (i.e., those which
1442
+ produce the smallest `N` expected entropies) from which to randomly
1443
+ select a stimulus for presentation in the next trial.
1444
+ `maxConsecutiveReps` defines how many times the exact same stimulus
1445
+ can be presented on consecutive trials.
1446
+ For example, to randomly pick a stimulus from those which will
1447
+ produce the 4 smallest expected entropies, and to allow the same
1448
+ stimulus to be presented on two consecutive trials max, use
1449
+ `stimSelectionOptions=dict(N=4, maxConsecutiveReps=2)`.
1450
+ To achieve reproducible results, you may pass a seed to the
1451
+ random number generator via the `randomSeed` key.
1452
+
1453
+ paramEstimationMethod : {'mean', 'mode'}
1454
+ How to calculate the final parameter estimate. `mean` returns the
1455
+ mean of each parameter, weighted by their respective posterior
1456
+ probabilities. `mode` returns the parameters at the peak of
1457
+ the posterior distribution.
1458
+
1459
+ extraInfo : dict
1460
+ Additional information to store along the actual QUEST+ staircase
1461
+ data.
1462
+
1463
+ name : str
1464
+ The name of the QUEST+ staircase object. This will appear in the
1465
+ PsychoPy logs.
1466
+
1467
+ label : str
1468
+ Only used by :class:`MultiStairHandler`, and otherwise ignored.
1469
+
1470
+ kwargs : dict
1471
+ Additional keyword arguments. These might be passed, for example,
1472
+ through a :class:`MultiStairHandler`, and will be ignored. A
1473
+ warning will be emitted whenever additional keyword arguments
1474
+ have been passed.
1475
+
1476
+ Warns
1477
+ -----
1478
+ RuntimeWarning
1479
+ If an unknown keyword argument was passed.
1480
+
1481
+ Notes
1482
+ -----
1483
+ The QUEST+ algorithm was first described by [1]_.
1484
+
1485
+ .. [1] Andrew B. Watson (2017). QUEST+: A general multidimensional
1486
+ Bayesian adaptive psychometric method.
1487
+ Journal of Vision, 17(3):10. doi: 10.1167/17.3.10.
1488
+
1489
+ """
1490
+ if sys.version_info.major == 3 and sys.version_info.minor >= 6:
1491
+ import questplus as qp
1492
+ else:
1493
+ msg = 'QUEST+ implementation requires Python 3.6 or newer'
1494
+ raise RuntimeError(msg)
1495
+
1496
+ msg = ('The QUEST+ staircase implementation is currently being '
1497
+ 'tested and may be subject to change.')
1498
+ logging.critical(msg)
1499
+
1500
+ if kwargs:
1501
+ msg = ('The following keyword arguments are unknown to '
1502
+ 'QuestPlusHandler and will be ignored: \n')
1503
+ for k in kwargs.keys():
1504
+ msg += '\n - %s' % k
1505
+ msg += ('\n\nIf you are using QuestPlusHandler through a '
1506
+ 'MultiStairHandler, it may be safe to ignore this '
1507
+ 'warning.')
1508
+ logging.warn(msg)
1509
+
1510
+ # Ensure we get a proper unit-testable warning too (not just a
1511
+ # logfile entry)
1512
+ msg = 'Unknown keyword argument(s) passed to QuestPlusHandler'
1513
+ warnings.warn(msg, RuntimeWarning)
1514
+
1515
+ super().__init__(startVal=startIntensity, nTrials=nTrials,
1516
+ stepType=stimScale, extraInfo=extraInfo, name=name)
1517
+
1518
+ # We don't use these attributes that were inherited from StairHandler.
1519
+ self.currentDirection = None
1520
+ self.stepSizeCurrent = None
1521
+ # Note that self.stepType is not used either: we use self.stimScale
1522
+ # instead (which is defined below).
1523
+
1524
+ self.intensityVals = intensityVals
1525
+ self.thresholdVals = thresholdVals
1526
+ self.slopeVals = slopeVals
1527
+ self.lowerAsymptoteVals = lowerAsymptoteVals
1528
+ self.lapseRateVals = lapseRateVals
1529
+ self.responseVals = responseVals
1530
+
1531
+ self.psychometricFunc = psychometricFunc
1532
+ self.stimScale = stimScale
1533
+ self.stimSelectionMethod = stimSelectionMethod
1534
+ self.stimSelectionOptions = stimSelectionOptions
1535
+ self.paramEstimationMethod = paramEstimationMethod
1536
+ self._prior = prior
1537
+
1538
+ # questplus uses different parameter names.
1539
+ if self.stimSelectionMethod == 'minEntropy':
1540
+ stimSelectionMethod_ = 'min_entropy'
1541
+ elif self.stimSelectionMethod == 'minNEntropy':
1542
+ stimSelectionMethod_ = 'min_n_entropy'
1543
+ else:
1544
+ raise ValueError('Unknown stimSelectionMethod requested.')
1545
+
1546
+ if self.stimSelectionOptions is not None:
1547
+ valid = ('N', 'maxConsecutiveReps', 'randomSeed')
1548
+ if any([o not in valid for o in self.stimSelectionOptions]):
1549
+ msg = ('Unknown stimSelectionOptions requested. '
1550
+ 'Valid options are: %s' % ', '.join(valid))
1551
+ raise ValueError(msg)
1552
+
1553
+ stimSelectionOptions_ = dict()
1554
+
1555
+ if 'N' in self.stimSelectionOptions:
1556
+ stimSelectionOptions_['n'] = self.stimSelectionOptions['N']
1557
+ if 'maxConsecutiveReps' in self.stimSelectionOptions:
1558
+ stimSelectionOptions_['max_consecutive_reps'] = self.stimSelectionOptions['maxConsecutiveReps']
1559
+ if 'randomSeed' in self.stimSelectionOptions:
1560
+ stimSelectionOptions_['random_seed'] = self.stimSelectionOptions['randomSeed']
1561
+ else:
1562
+ stimSelectionOptions_ = self.stimSelectionOptions
1563
+
1564
+ if self._prior is not None:
1565
+ valid = ('threshold', 'slope', 'lapseRate', 'lowerAsymptote')
1566
+ if any([p not in valid for p in self._prior]):
1567
+ msg = ('Invalid prior parameter(s) specified. '
1568
+ 'Valid parameter names are: %s' % ', '.join(valid))
1569
+ raise ValueError(msg)
1570
+
1571
+ prior_ = dict()
1572
+
1573
+ if 'threshold' in self._prior:
1574
+ prior_['threshold'] = self._prior['threshold']
1575
+ if 'slope' in self._prior:
1576
+ prior_['slope'] = self._prior['slope']
1577
+ if 'lapseRate' in self._prior:
1578
+ prior_['lapse_rate'] = self._prior['lapseRate']
1579
+ if 'lowerAsymptote' in self._prior:
1580
+ prior_['lower_asymptote'] = self._prior['lowerAsymptote']
1581
+ else:
1582
+ prior_ = self._prior
1583
+
1584
+ if self.psychometricFunc == 'weibull':
1585
+ self._qp = qp.QuestPlusWeibull(
1586
+ intensities=self.intensityVals,
1587
+ thresholds=self.thresholdVals,
1588
+ slopes=self.slopeVals,
1589
+ lower_asymptotes=self.lowerAsymptoteVals,
1590
+ lapse_rates=self.lapseRateVals,
1591
+ prior=prior_,
1592
+ responses=self.responseVals,
1593
+ stim_scale=self.stimScale,
1594
+ stim_selection_method=stimSelectionMethod_,
1595
+ stim_selection_options=stimSelectionOptions_,
1596
+ param_estimation_method=self.paramEstimationMethod)
1597
+ else:
1598
+ msg = ('Currently only the Weibull psychometric function is '
1599
+ 'supported.')
1600
+ raise ValueError(msg)
1601
+
1602
+ # Ensure self._nextIntensity is set in case the `startIntensity` kwarg
1603
+ # was supplied. We never actually use self._nextIntensity in the
1604
+ # QuestPlusHandler; it's mere purpose here is to make the
1605
+ # MultiStairHandler happy.
1606
+ if self.startIntensity is not None:
1607
+ self._nextIntensity = self.startIntensity
1608
+ else:
1609
+ self._nextIntensity = self._qp.next_intensity
1610
+
1611
+ @property
1612
+ def startIntensity(self):
1613
+ return self.startVal
1614
+
1615
+ def addResponse(self, response, intensity=None):
1616
+ self.data.append(response)
1617
+
1618
+ # if needed replace the existing intensity with this custom one
1619
+ if intensity is not None:
1620
+ if len(self.intensities) != 0: # avoid error during the first trial where self.intensities will be of length 0, so pop does not work
1621
+ self.intensities.pop() # remove the auto-generated one
1622
+ self.intensities.append(intensity)
1623
+ # add the current data to experiment if possible
1624
+ if self.getExp() is not None:
1625
+ # update the experiment handler too
1626
+ self.getExp().addData(self.name + ".response", response)
1627
+ self._qp.update(intensity=self.intensities[-1],
1628
+ response=response)
1629
+
1630
+ def __next__(self):
1631
+ self._checkFinished()
1632
+ if not self.finished:
1633
+ # update pointer for next trial
1634
+ self.thisTrialN += 1
1635
+ if self.thisTrialN == 0 and self.startIntensity is not None:
1636
+ self.intensities.append(self.startVal)
1637
+ else:
1638
+ self.intensities.append(self._qp.next_intensity)
1639
+
1640
+ # We never actually use self._nextIntensity in the
1641
+ # QuestPlusHandler; it's mere purpose here is to make the
1642
+ # MultiStairHandler happy.
1643
+ self._nextIntensity = self.intensities[-1]
1644
+ return self.intensities[-1]
1645
+ else:
1646
+ self._terminate()
1647
+
1648
+ next = __next__
1649
+
1650
+ def _checkFinished(self):
1651
+ if self.nTrials is not None and len(self.intensities) >= self.nTrials:
1652
+ self.finished = True
1653
+ else:
1654
+ self.finished = False
1655
+
1656
+ @property
1657
+ def paramEstimate(self):
1658
+ """
1659
+ The estimated parameters of the psychometric function.
1660
+
1661
+ Returns
1662
+ -------
1663
+ dict of floats
1664
+ A dictionary whose keys correspond to the names of the estimated
1665
+ parameters.
1666
+
1667
+ """
1668
+ qp_estimate = self._qp.param_estimate
1669
+ estimate = dict(threshold=qp_estimate['threshold'],
1670
+ slope=qp_estimate['slope'],
1671
+ lowerAsymptote=qp_estimate['lower_asymptote'],
1672
+ lapseRate=qp_estimate['lapse_rate'])
1673
+ return estimate
1674
+
1675
+ @property
1676
+ def prior(self):
1677
+ """
1678
+ The marginal prior distributions.
1679
+
1680
+ Returns
1681
+ -------
1682
+ dict of np.ndarrays
1683
+ A dictionary whose keys correspond to the names of the parameters.
1684
+
1685
+ """
1686
+ qp_prior = self._qp.prior
1687
+
1688
+ threshold = qp_prior.sum(dim=('slope', 'lower_asymptote', 'lapse_rate'))
1689
+ slope = qp_prior.sum(dim=('threshold', 'lower_asymptote', 'lapse_rate'))
1690
+ lowerAsymptote = qp_prior.sum(dim=('threshold', 'slope', 'lapse_rate'))
1691
+ lapseRate = qp_prior.sum(dim=('threshold', 'slope', 'lower_asymptote'))
1692
+
1693
+ qp_prior = dict(threshold=threshold.values,
1694
+ slope=slope.values,
1695
+ lowerAsymptote=lowerAsymptote.values,
1696
+ lapseRate=lapseRate.values)
1697
+ return qp_prior
1698
+
1699
+ @property
1700
+ def posterior(self):
1701
+ """
1702
+ The marginal posterior distributions.
1703
+
1704
+ Returns
1705
+ -------
1706
+ dict of np.ndarrays
1707
+ A dictionary whose keys correspond to the names of the estimated
1708
+ parameters.
1709
+
1710
+ """
1711
+ qp_posterior = self._qp.posterior
1712
+
1713
+ threshold = qp_posterior.sum(dim=('slope', 'lower_asymptote', 'lapse_rate'))
1714
+ slope = qp_posterior.sum(dim=('threshold', 'lower_asymptote', 'lapse_rate'))
1715
+ lowerAsymptote = qp_posterior.sum(dim=('threshold', 'slope', 'lapse_rate'))
1716
+ lapseRate = qp_posterior.sum(dim=('threshold', 'slope', 'lower_asymptote'))
1717
+
1718
+ posterior = dict(threshold=threshold.values,
1719
+ slope=slope.values,
1720
+ lowerAsymptote=lowerAsymptote.values,
1721
+ lapseRate=lapseRate.values)
1722
+ return posterior
1723
+
1724
+ def saveAsJson(self,
1725
+ fileName=None,
1726
+ encoding='utf-8-sig',
1727
+ fileCollisionMethod='rename'):
1728
+ self_copy = copy.deepcopy(self)
1729
+
1730
+ # Convert questplus.QuestPlus to JSON using questplus's built-in
1731
+ # functionality. questplus uses xarray, which cannot be easily
1732
+ # serialized directly using json_tricks (yet).
1733
+ self_copy._qp_json = self_copy._qp.to_json()
1734
+ del self_copy._qp
1735
+
1736
+ r = (super(QuestPlusHandler, self_copy)
1737
+ .saveAsJson(fileName=fileName,
1738
+ encoding=encoding,
1739
+ fileCollisionMethod=fileCollisionMethod))
1740
+
1741
+ if fileName is None:
1742
+ return r
1743
+
1744
+
1745
+ class MultiStairHandler(_BaseTrialHandler):
1746
+
1747
+ def __init__(
1748
+ self,
1749
+ stairType='simple',
1750
+ method='random',
1751
+ conditions=None,
1752
+ nTrials=50,
1753
+ randomSeed=None,
1754
+ originPath=None,
1755
+ isTrials=True,
1756
+ name='',
1757
+ autoLog=True,
1758
+ ):
1759
+ """A Handler to allow easy interleaved staircase procedures
1760
+ (simple or QUEST).
1761
+
1762
+ Parameters for the staircases, as used by the relevant
1763
+ :class:`StairHandler` or
1764
+ :class:`QuestHandler` (e.g. the `startVal`, `minVal`, `maxVal`...)
1765
+ should be specified in the `conditions` list and may vary between
1766
+ each staircase. In particular, the conditions **must** include
1767
+ a `startVal` (because this is a required argument to the above
1768
+ handlers), a `label` to tag the staircase and a `startValSd`
1769
+ (only for QUEST staircases). Any parameters not specified in the
1770
+ conditions file will revert to the default for that individual
1771
+ handler.
1772
+
1773
+ If you need to customize the behaviour further you may want to
1774
+ look at the recipe on :ref:`interleavedStairs`.
1775
+
1776
+ :params:
1777
+
1778
+ stairType: 'simple', 'quest', or 'questplus'
1779
+ Use a :class:`StairHandler`, a :class:`QuestHandler`, or a
1780
+ :class:`QuestPlusHandler`.
1781
+
1782
+ method: 'random', 'fullRandom', or 'sequential'
1783
+ If `random`, stairs are shuffled in each repeat but not
1784
+ randomized more than that (so you can't have 3 repeats of the
1785
+ same staircase in a row unless it's the only one still
1786
+ running). If `fullRandom`, the staircase order is "fully"
1787
+ randomized, meaning that, theoretically, a large number of
1788
+ subsequent trials could invoke the same staircase repeatedly.
1789
+ If `sequential`, don't perform any randomization.
1790
+
1791
+ conditions: a list of dictionaries specifying conditions
1792
+ Can be used to control parameters for the different staircases.
1793
+ Can be imported from an Excel file using
1794
+ `psychopy.data.importConditions`
1795
+ MUST include keys providing, 'startVal', 'label' and
1796
+ 'startValSd' (QUEST only).
1797
+ The 'label' will be used in data file saving so should
1798
+ be unique.
1799
+ See Example Usage below.
1800
+
1801
+ nTrials=50
1802
+ Minimum trials to run (but may take more if the staircase
1803
+ hasn't also met its minimal reversals.
1804
+ See :class:`~psychopy.data.StairHandler`
1805
+
1806
+ randomSeed : int or None
1807
+ The seed with which to initialize the random number generator
1808
+ (RNG). If `None` (default), do not initialize the RNG with
1809
+ a specific value.
1810
+
1811
+ isTrials : bool
1812
+ Is this controlling trials, or created for another purpose (e.g. iterating a
1813
+ stimulus within a trial)?
1814
+
1815
+ Example usage::
1816
+
1817
+ conditions=[
1818
+ {'label':'low', 'startVal': 0.1, 'ori':45},
1819
+ {'label':'high','startVal': 0.8, 'ori':45},
1820
+ {'label':'low', 'startVal': 0.1, 'ori':90},
1821
+ {'label':'high','startVal': 0.8, 'ori':90},
1822
+ ]
1823
+ stairs = data.MultiStairHandler(conditions=conditions, nTrials=50)
1824
+
1825
+ for thisIntensity, thisCondition in stairs:
1826
+ thisOri = thisCondition['ori']
1827
+
1828
+ # do something with thisIntensity and thisOri
1829
+
1830
+ stairs.addResponse(correctIncorrect) # this is ESSENTIAL
1831
+
1832
+ # save data as multiple formats
1833
+ stairs.saveDataAsExcel(fileName) # easy to browse
1834
+ stairs.saveAsPickle(fileName) # contains more info
1835
+
1836
+ Raises
1837
+ ------
1838
+ ValueError
1839
+ If an unknown randomization option was passed via the `method`
1840
+ keyword argument.
1841
+
1842
+ """
1843
+ self.name = name
1844
+ self.autoLog = autoLog
1845
+ self.type = stairType
1846
+ self.method = method
1847
+ self.randomSeed = randomSeed
1848
+ self._rng = np.random.RandomState(seed=randomSeed)
1849
+ self.conditions = conditions
1850
+ self.nTrials = nTrials
1851
+ self.finished = False
1852
+ self.totalTrials = 0
1853
+ self.isTrials = isTrials
1854
+ self._checkArguments()
1855
+ # create staircases
1856
+ self.staircases = [] # all staircases
1857
+ self.runningStaircases = [] # staircases that haven't finished yet
1858
+ self.thisPassRemaining = [] # staircases to run this pass
1859
+ self._createStairs()
1860
+
1861
+ # fetch first staircase/value (without altering/advancing it)
1862
+ self._startNewPass()
1863
+ self.currentStaircase = self.thisPassRemaining[0] # take the first
1864
+ # gets updated by self.addData()
1865
+ self._nextIntensity = self.currentStaircase._nextIntensity
1866
+ # store the origin file and its path
1867
+ self.originPath, self.origin = self.getOriginPathAndFile(originPath)
1868
+ self._exp = None # the experiment handler that owns me!
1869
+
1870
+ def _checkArguments(self):
1871
+ # Did we get a `conditions` parameter, correctly formatted?
1872
+ if not isinstance(self.conditions, Iterable):
1873
+ raise TypeError(
1874
+ '`conditions` parameter passed to MultiStairHandler '
1875
+ 'should be a list, not a %s.' % type(self.conditions))
1876
+
1877
+ c0 = self.conditions[0]
1878
+ if not isinstance(c0, dict):
1879
+ raise TypeError(
1880
+ '`conditions` passed to MultiStairHandler should be a '
1881
+ 'list of python dictionaries, not a list of %ss.' %
1882
+ type(c0))
1883
+
1884
+ # Did `conditions` contain the things we need?
1885
+ params = list(c0.keys())
1886
+ if self.type not in ['simple', 'quest', 'QUEST', 'questplus']:
1887
+ raise ValueError(
1888
+ 'MultiStairHandler `stairType` should be \'simple\', '
1889
+ '\'QUEST\' or \'quest\', not \'%s\'' % self.type)
1890
+
1891
+ if self.type != 'questplus' and 'startVal' not in params:
1892
+ raise AttributeError('MultiStairHandler needs a parameter called '
1893
+ '`startVal` in conditions')
1894
+ if 'label' not in params:
1895
+ raise AttributeError('MultiStairHandler needs a parameter called'
1896
+ ' `label` in conditions')
1897
+ if self.type in ['QUEST', 'quest'] and 'startValSd' not in params:
1898
+ raise AttributeError(
1899
+ 'MultiStairHandler needs a parameter called '
1900
+ '`startValSd` in conditions for QUEST staircases.')
1901
+
1902
+ def _createStairs(self):
1903
+ for condition in self.conditions:
1904
+ # We create a copy, because we are going to remove items from
1905
+ # this dictionary in this loop, but don't want these
1906
+ # changes to alter the originals in self.conditions.
1907
+ args = dict(condition)
1908
+
1909
+ # If no individual `nTrials` parameter was supplied for this
1910
+ # staircase, use the `nTrials` that were passed to
1911
+ # the MultiStairHandler on instantiation.
1912
+ if 'nTrials' not in args:
1913
+ args['nTrials'] = self.nTrials
1914
+
1915
+ if self.type == 'simple':
1916
+ startVal = args.pop('startVal')
1917
+ thisStair = StairHandler(startVal, **args)
1918
+ elif self.type in ['QUEST', 'quest']:
1919
+ startVal = args.pop('startVal')
1920
+ startValSd = args.pop('startValSd')
1921
+ thisStair = QuestHandler(startVal, startValSd, **args)
1922
+ elif self.type == 'questplus':
1923
+ thisStair = QuestPlusHandler(**args)
1924
+
1925
+ # This isn't normally part of handler.
1926
+ thisStair.condition = condition
1927
+
1928
+ # And finally, add it to the list.
1929
+ self.staircases.append(thisStair)
1930
+ self.runningStaircases.append(thisStair)
1931
+
1932
+ def __iter__(self):
1933
+ return self
1934
+
1935
+ def __next__(self):
1936
+ """Advances to next trial and returns it.
1937
+
1938
+ This can be handled with code such as::
1939
+
1940
+ staircase = data.MultiStairHandler(.......)
1941
+ for eachTrial in staircase: # automatically stops when done
1942
+ # do stuff here for the trial
1943
+
1944
+ or::
1945
+
1946
+ staircase = data.MultiStairHandler(.......)
1947
+ while True: # ie forever
1948
+ try:
1949
+ thisTrial = staircase.next()
1950
+ except StopIteration: # we got a StopIteration error
1951
+ break # break out of the forever loop
1952
+ # do stuff here for the trial
1953
+
1954
+ """
1955
+ # create a new set for this pass if needed
1956
+ if (not hasattr(self, 'thisPassRemaining') or
1957
+ not self.thisPassRemaining):
1958
+ if self.runningStaircases:
1959
+ self._startNewPass()
1960
+ else:
1961
+ self.finished = True
1962
+ raise StopIteration
1963
+
1964
+ # fetch next staircase/value
1965
+ self.currentStaircase = self.thisPassRemaining.pop(
1966
+ 0) # take the first and remove it
1967
+ # if staircase.next() not called, staircaseHandler would not
1968
+ # save the first intensity,
1969
+ # Error: miss align intensities and responses
1970
+ # gets updated by self.addResponse()
1971
+ self._nextIntensity = next(self.currentStaircase)
1972
+
1973
+ # return value
1974
+ if not self.finished:
1975
+ # inform experiment of the condition (but not intensity,
1976
+ # that might be overridden by user)
1977
+ if self.getExp() != None:
1978
+ exp = self.getExp()
1979
+ stair = self.currentStaircase
1980
+ for key, value in list(stair.condition.items()):
1981
+ exp.addData("%s.%s" % (self.name, key), value)
1982
+ exp.addData(self.name + '.thisIndex',
1983
+ self.conditions.index(stair.condition))
1984
+ exp.addData(self.name + '.thisRepN', stair.thisTrialN + 1)
1985
+ exp.addData(self.name + '.thisN', self.totalTrials)
1986
+
1987
+ if self.type != 'questplus':
1988
+ exp.addData(self.name + '.direction', stair.currentDirection)
1989
+ exp.addData(self.name + '.stepSize', stair.stepSizeCurrent)
1990
+ exp.addData(self.name + '.stepType', stair.stepType)
1991
+
1992
+ exp.addData(self.name + '.intensity', self._nextIntensity)
1993
+
1994
+ self._trialAborted = False # reset this flag
1995
+ return self._nextIntensity, self.currentStaircase.condition
1996
+ else:
1997
+ raise StopIteration
1998
+
1999
+ next = __next__ # allows user to call without a loop `val = trials.next()`
2000
+
2001
+ def _startNewPass(self):
2002
+ """Create a new iteration of the running staircases for this pass.
2003
+
2004
+ This is not normally needed by the user - it gets called at __init__
2005
+ and every time that next() runs out of trials for this pass.
2006
+ """
2007
+ if self.method == 'sequential':
2008
+ self.thisPassRemaining = copy.copy(self.runningStaircases)
2009
+ elif self.method == 'random':
2010
+ # np.random.shuffle() works in-place!
2011
+ self.thisPassRemaining = copy.copy(self.runningStaircases)
2012
+ self._rng.shuffle(self.thisPassRemaining)
2013
+ elif self.method == 'fullRandom':
2014
+ n = len(self.runningStaircases)
2015
+ self.thisPassRemaining = self._rng.choice(self.runningStaircases,
2016
+ size=n, replace=True)
2017
+ # np.random.choice() returns an ndarray, so convert back to a list
2018
+ # again.
2019
+ self.thisPassRemaining = list(self.thisPassRemaining)
2020
+ else:
2021
+ raise ValueError('Unknown randomization method requested.')
2022
+
2023
+ @property
2024
+ def intensity(self):
2025
+ """The intensity (level) of the current staircase"""
2026
+ return self.currentStaircase._nextIntensity
2027
+
2028
+ @intensity.setter
2029
+ def intensity(self, intensity):
2030
+ """The intensity (level) of the current staircase"""
2031
+ self.currentStaircase._nextIntensity = intensity
2032
+
2033
+ def abortCurrentTrial(self, action='random'):
2034
+ """Abort the current trial (staircase).
2035
+
2036
+ Calling this during an experiment abort the current staircase used this
2037
+ trial. The current staircase will be reshuffled into available
2038
+ staircases depending on the `action` parameter.
2039
+
2040
+ Parameters
2041
+ ----------
2042
+ action : str
2043
+ Action to take with the aborted trial. Can be either of `'random'`,
2044
+ or `'append'`. The default action is `'random'`.
2045
+
2046
+ Notes
2047
+ -----
2048
+ * When using `action='random'`, the RNG state for the trial handler is
2049
+ not used.
2050
+
2051
+ """
2052
+ # check if value for parameter `action` is valid
2053
+ if not isinstance(action, str): # type checks for params
2054
+ raise TypeError(
2055
+ "Parameter `action` specified incorrect type, must be `str`.")
2056
+
2057
+ # reinsert the current staircase into the list of running staircases
2058
+ if action == 'append':
2059
+ self.thisPassRemaining.append(self.currentStaircase)
2060
+ elif action == 'random':
2061
+ self.thisPassRemaining.append(self.currentStaircase)
2062
+ # shuffle using the numpy RNG to preserve state
2063
+ np.random.shuffle(self.thisPassRemaining)
2064
+ else:
2065
+ raise ValueError(
2066
+ "Value for parameter `action` must be either 'random' or "
2067
+ "'append'.")
2068
+
2069
+ # set flag to indicate that the trial was aborted
2070
+ self._trialAborted = True
2071
+
2072
+ def addResponse(self, result, intensity=None):
2073
+ """Add a 1 or 0 to signify a correct / detected or
2074
+ incorrect / missed trial
2075
+
2076
+ This is essential to advance the staircase to a new intensity level!
2077
+ """
2078
+ self.currentStaircase.addResponse(result, intensity)
2079
+ if self.currentStaircase.finished:
2080
+ self.runningStaircases.remove(self.currentStaircase)
2081
+ # add the current data to experiment if poss
2082
+ if self.getExp() != None: # update the experiment handler too
2083
+ self.getExp().addData(self.name + ".response", result)
2084
+ self.totalTrials += 1
2085
+
2086
+ def addOtherData(self, name, value):
2087
+ """Add some data about the current trial that will not be used to
2088
+ control the staircase(s) such as reaction time data
2089
+ """
2090
+ self.currentStaircase.addOtherData(name, value)
2091
+
2092
+ def addData(self, result, intensity=None):
2093
+ """Deprecated 1.79.00: It was ambiguous whether you were adding
2094
+ the response (0 or 1) or some other data concerning the trial so
2095
+ there is now a pair of explicit methods:
2096
+
2097
+ * addResponse(corr,intensity) #some data that alters the next
2098
+ trial value
2099
+ * addOtherData('RT', reactionTime) #some other data that won't
2100
+ control staircase
2101
+
2102
+ """
2103
+ self.addResponse(result, intensity)
2104
+ if isinstance(result, str):
2105
+ raise TypeError("MultiStairHandler.addData should only receive "
2106
+ "corr / incorr. Use .addOtherData('datName',val)")
2107
+
2108
+ def saveAsPickle(self, fileName, fileCollisionMethod='rename'):
2109
+ """Saves a copy of self (with data) to a pickle file.
2110
+
2111
+ This can be reloaded later and further analyses carried out.
2112
+
2113
+ :Parameters:
2114
+
2115
+ fileCollisionMethod: Collision method passed to
2116
+ :func:`~psychopy.tools.fileerrortools.handleFileCollision`
2117
+
2118
+ """
2119
+ if self.totalTrials < 1:
2120
+ if self.autoLog:
2121
+ logging.debug('StairHandler.saveAsPickle called but no '
2122
+ 'trials completed. Nothing saved')
2123
+ return -1
2124
+
2125
+ # otherwise use default location
2126
+ if not fileName.endswith('.psydat'):
2127
+ fileName += '.psydat'
2128
+
2129
+ with openOutputFile(fileName=fileName, append=False,
2130
+ fileCollisionMethod=fileCollisionMethod) as f:
2131
+ pickle.dump(self, f)
2132
+
2133
+ if (fileName is not None) and (fileName != 'stdout'):
2134
+ logging.info('saved data to %s' % f.name)
2135
+
2136
+ def saveAsExcel(self, fileName, matrixOnly=False, appendFile=False,
2137
+ fileCollisionMethod='rename'):
2138
+ """Save a summary data file in Excel OpenXML format workbook
2139
+ (:term:`xlsx`) for processing in most spreadsheet packages.
2140
+ This format is compatible with versions of Excel (2007 or greater)
2141
+ and with OpenOffice (>=3.0).
2142
+
2143
+ It has the advantage over the simpler text files (see
2144
+ :func:`TrialHandler.saveAsText()` )
2145
+ that the data from each staircase will be save in the same file, with
2146
+ the sheet name coming from the 'label' given in the dictionary of
2147
+ conditions during initialisation of the Handler.
2148
+
2149
+ The file extension `.xlsx` will be added if not given already.
2150
+
2151
+ The file will contain a set of values specifying the staircase level
2152
+ ('intensity') at each reversal, a list of reversal indices
2153
+ (trial numbers), the raw staircase/intensity level on *every* trial
2154
+ and the corresponding responses of the participant on every trial.
2155
+
2156
+ :Parameters:
2157
+
2158
+ fileName: string
2159
+ the name of the file to create or append. Can include
2160
+ relative or absolute path
2161
+
2162
+ matrixOnly: True or False
2163
+ If set to True then only the data itself will be output
2164
+ (no additional info)
2165
+
2166
+ appendFile: True or False
2167
+ If False any existing file with this name will be overwritten.
2168
+ If True then a new worksheet will be appended.
2169
+ If a worksheet already exists with that name a number will
2170
+ be added to make it unique.
2171
+
2172
+ fileCollisionMethod: string
2173
+ Collision method passed to
2174
+ :func:`~psychopy.tools.fileerrortools.handleFileCollision`
2175
+ This is ignored if ``append`` is ``True``.
2176
+
2177
+ """
2178
+ if self.totalTrials < 1:
2179
+ if self.autoLog:
2180
+ logging.debug('StairHandler.saveAsExcel called but no'
2181
+ ' trials completed. Nothing saved')
2182
+ return -1
2183
+
2184
+ append = appendFile
2185
+ for thisStair in self.staircases:
2186
+ # make a filename
2187
+ label = thisStair.condition['label']
2188
+ thisStair.saveAsExcel(
2189
+ fileName, sheetName=label, matrixOnly=matrixOnly,
2190
+ appendFile=append, fileCollisionMethod=fileCollisionMethod)
2191
+ append = True
2192
+
2193
+ def saveAsText(self, fileName,
2194
+ delim=None,
2195
+ matrixOnly=False,
2196
+ fileCollisionMethod='rename',
2197
+ encoding='utf-8-sig'):
2198
+ """Write out text files with the data.
2199
+
2200
+ For MultiStairHandler this will output one file for each staircase
2201
+ that was run, with _label added to the fileName that you specify above
2202
+ (label comes from the condition dictionary you specified when you
2203
+ created the Handler).
2204
+
2205
+ :Parameters:
2206
+
2207
+ fileName: a string
2208
+ The name of the file, including path if needed. The extension
2209
+ `.tsv` will be added if not included.
2210
+
2211
+ delim: a string
2212
+ the delimiter to be used (e.g. '\t' for tab-delimited,
2213
+ ',' for csv files)
2214
+
2215
+ matrixOnly: True/False
2216
+ If True, prevents the output of the `extraInfo` provided
2217
+ at initialisation.
2218
+
2219
+ fileCollisionMethod:
2220
+ Collision method passed to
2221
+ :func:`~psychopy.tools.fileerrortools.handleFileCollision`
2222
+
2223
+ encoding:
2224
+ The encoding to use when saving a the file.
2225
+ Defaults to `utf-8-sig`.
2226
+
2227
+ """
2228
+ if self.totalTrials < 1:
2229
+ if self.autoLog:
2230
+ logging.debug('StairHandler.saveAsText called but no trials'
2231
+ ' completed. Nothing saved')
2232
+ return -1
2233
+ for thisStair in self.staircases:
2234
+ # make a filename
2235
+ label = thisStair.condition['label']
2236
+ thisFileName = fileName + "_" + label
2237
+ thisStair.saveAsText(
2238
+ fileName=thisFileName, delim=delim, matrixOnly=matrixOnly,
2239
+ fileCollisionMethod=fileCollisionMethod, encoding=encoding
2240
+ )
2241
+
2242
+ def printAsText(self,
2243
+ delim='\t',
2244
+ matrixOnly=False):
2245
+ """Write the data to the standard output stream
2246
+
2247
+ :Parameters:
2248
+
2249
+ delim: a string
2250
+ the delimitter to be used (e.g. '\t' for tab-delimitted,
2251
+ ',' for csv files)
2252
+
2253
+ matrixOnly: True/False
2254
+ If True, prevents the output of the `extraInfo` provided
2255
+ at initialisation.
2256
+ """
2257
+ nStairs = len(self.staircases)
2258
+ for stairN, thisStair in enumerate(self.staircases):
2259
+ if stairN < nStairs - 1:
2260
+ thisMatrixOnly = True # no header info for first files
2261
+ else:
2262
+ thisMatrixOnly = matrixOnly
2263
+ # make a filename
2264
+ label = thisStair.condition['label']
2265
+ thisStair.saveAsText(fileName='stdout', delim=delim,
2266
+ matrixOnly=thisMatrixOnly)
2267
+
2268
+
2269
+ if __name__ == "__main__":
2270
+ pass