opentrons 8.6.0__py3-none-any.whl

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  1. opentrons/__init__.py +150 -0
  2. opentrons/_version.py +34 -0
  3. opentrons/calibration_storage/__init__.py +54 -0
  4. opentrons/calibration_storage/deck_configuration.py +62 -0
  5. opentrons/calibration_storage/encoder_decoder.py +31 -0
  6. opentrons/calibration_storage/file_operators.py +142 -0
  7. opentrons/calibration_storage/helpers.py +103 -0
  8. opentrons/calibration_storage/ot2/__init__.py +34 -0
  9. opentrons/calibration_storage/ot2/deck_attitude.py +85 -0
  10. opentrons/calibration_storage/ot2/mark_bad_calibration.py +27 -0
  11. opentrons/calibration_storage/ot2/models/__init__.py +0 -0
  12. opentrons/calibration_storage/ot2/models/v1.py +149 -0
  13. opentrons/calibration_storage/ot2/pipette_offset.py +129 -0
  14. opentrons/calibration_storage/ot2/tip_length.py +281 -0
  15. opentrons/calibration_storage/ot3/__init__.py +31 -0
  16. opentrons/calibration_storage/ot3/deck_attitude.py +83 -0
  17. opentrons/calibration_storage/ot3/gripper_offset.py +156 -0
  18. opentrons/calibration_storage/ot3/models/__init__.py +0 -0
  19. opentrons/calibration_storage/ot3/models/v1.py +122 -0
  20. opentrons/calibration_storage/ot3/module_offset.py +138 -0
  21. opentrons/calibration_storage/ot3/pipette_offset.py +95 -0
  22. opentrons/calibration_storage/types.py +45 -0
  23. opentrons/cli/__init__.py +21 -0
  24. opentrons/cli/__main__.py +5 -0
  25. opentrons/cli/analyze.py +557 -0
  26. opentrons/config/__init__.py +631 -0
  27. opentrons/config/advanced_settings.py +871 -0
  28. opentrons/config/defaults_ot2.py +214 -0
  29. opentrons/config/defaults_ot3.py +499 -0
  30. opentrons/config/feature_flags.py +86 -0
  31. opentrons/config/gripper_config.py +55 -0
  32. opentrons/config/reset.py +203 -0
  33. opentrons/config/robot_configs.py +187 -0
  34. opentrons/config/types.py +183 -0
  35. opentrons/drivers/__init__.py +0 -0
  36. opentrons/drivers/absorbance_reader/__init__.py +11 -0
  37. opentrons/drivers/absorbance_reader/abstract.py +72 -0
  38. opentrons/drivers/absorbance_reader/async_byonoy.py +352 -0
  39. opentrons/drivers/absorbance_reader/driver.py +81 -0
  40. opentrons/drivers/absorbance_reader/hid_protocol.py +161 -0
  41. opentrons/drivers/absorbance_reader/simulator.py +84 -0
  42. opentrons/drivers/asyncio/__init__.py +0 -0
  43. opentrons/drivers/asyncio/communication/__init__.py +22 -0
  44. opentrons/drivers/asyncio/communication/async_serial.py +187 -0
  45. opentrons/drivers/asyncio/communication/errors.py +88 -0
  46. opentrons/drivers/asyncio/communication/serial_connection.py +557 -0
  47. opentrons/drivers/command_builder.py +102 -0
  48. opentrons/drivers/flex_stacker/__init__.py +13 -0
  49. opentrons/drivers/flex_stacker/abstract.py +214 -0
  50. opentrons/drivers/flex_stacker/driver.py +768 -0
  51. opentrons/drivers/flex_stacker/errors.py +68 -0
  52. opentrons/drivers/flex_stacker/simulator.py +309 -0
  53. opentrons/drivers/flex_stacker/types.py +367 -0
  54. opentrons/drivers/flex_stacker/utils.py +19 -0
  55. opentrons/drivers/heater_shaker/__init__.py +5 -0
  56. opentrons/drivers/heater_shaker/abstract.py +76 -0
  57. opentrons/drivers/heater_shaker/driver.py +204 -0
  58. opentrons/drivers/heater_shaker/simulator.py +94 -0
  59. opentrons/drivers/mag_deck/__init__.py +6 -0
  60. opentrons/drivers/mag_deck/abstract.py +44 -0
  61. opentrons/drivers/mag_deck/driver.py +208 -0
  62. opentrons/drivers/mag_deck/simulator.py +63 -0
  63. opentrons/drivers/rpi_drivers/__init__.py +33 -0
  64. opentrons/drivers/rpi_drivers/dev_types.py +94 -0
  65. opentrons/drivers/rpi_drivers/gpio.py +282 -0
  66. opentrons/drivers/rpi_drivers/gpio_simulator.py +127 -0
  67. opentrons/drivers/rpi_drivers/interfaces.py +15 -0
  68. opentrons/drivers/rpi_drivers/types.py +364 -0
  69. opentrons/drivers/rpi_drivers/usb.py +102 -0
  70. opentrons/drivers/rpi_drivers/usb_simulator.py +22 -0
  71. opentrons/drivers/serial_communication.py +151 -0
  72. opentrons/drivers/smoothie_drivers/__init__.py +4 -0
  73. opentrons/drivers/smoothie_drivers/connection.py +51 -0
  74. opentrons/drivers/smoothie_drivers/constants.py +121 -0
  75. opentrons/drivers/smoothie_drivers/driver_3_0.py +1933 -0
  76. opentrons/drivers/smoothie_drivers/errors.py +49 -0
  77. opentrons/drivers/smoothie_drivers/parse_utils.py +143 -0
  78. opentrons/drivers/smoothie_drivers/simulator.py +99 -0
  79. opentrons/drivers/smoothie_drivers/types.py +16 -0
  80. opentrons/drivers/temp_deck/__init__.py +10 -0
  81. opentrons/drivers/temp_deck/abstract.py +54 -0
  82. opentrons/drivers/temp_deck/driver.py +197 -0
  83. opentrons/drivers/temp_deck/simulator.py +57 -0
  84. opentrons/drivers/thermocycler/__init__.py +12 -0
  85. opentrons/drivers/thermocycler/abstract.py +99 -0
  86. opentrons/drivers/thermocycler/driver.py +395 -0
  87. opentrons/drivers/thermocycler/simulator.py +126 -0
  88. opentrons/drivers/types.py +107 -0
  89. opentrons/drivers/utils.py +222 -0
  90. opentrons/execute.py +742 -0
  91. opentrons/hardware_control/__init__.py +65 -0
  92. opentrons/hardware_control/__main__.py +77 -0
  93. opentrons/hardware_control/adapters.py +98 -0
  94. opentrons/hardware_control/api.py +1347 -0
  95. opentrons/hardware_control/backends/__init__.py +7 -0
  96. opentrons/hardware_control/backends/controller.py +400 -0
  97. opentrons/hardware_control/backends/errors.py +9 -0
  98. opentrons/hardware_control/backends/estop_state.py +164 -0
  99. opentrons/hardware_control/backends/flex_protocol.py +497 -0
  100. opentrons/hardware_control/backends/ot3controller.py +1930 -0
  101. opentrons/hardware_control/backends/ot3simulator.py +900 -0
  102. opentrons/hardware_control/backends/ot3utils.py +664 -0
  103. opentrons/hardware_control/backends/simulator.py +442 -0
  104. opentrons/hardware_control/backends/status_bar_state.py +240 -0
  105. opentrons/hardware_control/backends/subsystem_manager.py +431 -0
  106. opentrons/hardware_control/backends/tip_presence_manager.py +173 -0
  107. opentrons/hardware_control/backends/types.py +14 -0
  108. opentrons/hardware_control/constants.py +6 -0
  109. opentrons/hardware_control/dev_types.py +125 -0
  110. opentrons/hardware_control/emulation/__init__.py +0 -0
  111. opentrons/hardware_control/emulation/abstract_emulator.py +21 -0
  112. opentrons/hardware_control/emulation/app.py +56 -0
  113. opentrons/hardware_control/emulation/connection_handler.py +38 -0
  114. opentrons/hardware_control/emulation/heater_shaker.py +150 -0
  115. opentrons/hardware_control/emulation/magdeck.py +60 -0
  116. opentrons/hardware_control/emulation/module_server/__init__.py +8 -0
  117. opentrons/hardware_control/emulation/module_server/client.py +78 -0
  118. opentrons/hardware_control/emulation/module_server/helpers.py +130 -0
  119. opentrons/hardware_control/emulation/module_server/models.py +31 -0
  120. opentrons/hardware_control/emulation/module_server/server.py +110 -0
  121. opentrons/hardware_control/emulation/parser.py +74 -0
  122. opentrons/hardware_control/emulation/proxy.py +241 -0
  123. opentrons/hardware_control/emulation/run_emulator.py +68 -0
  124. opentrons/hardware_control/emulation/scripts/__init__.py +0 -0
  125. opentrons/hardware_control/emulation/scripts/run_app.py +54 -0
  126. opentrons/hardware_control/emulation/scripts/run_module_emulator.py +72 -0
  127. opentrons/hardware_control/emulation/scripts/run_smoothie.py +37 -0
  128. opentrons/hardware_control/emulation/settings.py +119 -0
  129. opentrons/hardware_control/emulation/simulations.py +133 -0
  130. opentrons/hardware_control/emulation/smoothie.py +192 -0
  131. opentrons/hardware_control/emulation/tempdeck.py +69 -0
  132. opentrons/hardware_control/emulation/thermocycler.py +128 -0
  133. opentrons/hardware_control/emulation/types.py +10 -0
  134. opentrons/hardware_control/emulation/util.py +38 -0
  135. opentrons/hardware_control/errors.py +43 -0
  136. opentrons/hardware_control/execution_manager.py +164 -0
  137. opentrons/hardware_control/instruments/__init__.py +5 -0
  138. opentrons/hardware_control/instruments/instrument_abc.py +39 -0
  139. opentrons/hardware_control/instruments/ot2/__init__.py +0 -0
  140. opentrons/hardware_control/instruments/ot2/instrument_calibration.py +152 -0
  141. opentrons/hardware_control/instruments/ot2/pipette.py +777 -0
  142. opentrons/hardware_control/instruments/ot2/pipette_handler.py +995 -0
  143. opentrons/hardware_control/instruments/ot3/__init__.py +0 -0
  144. opentrons/hardware_control/instruments/ot3/gripper.py +420 -0
  145. opentrons/hardware_control/instruments/ot3/gripper_handler.py +173 -0
  146. opentrons/hardware_control/instruments/ot3/instrument_calibration.py +214 -0
  147. opentrons/hardware_control/instruments/ot3/pipette.py +858 -0
  148. opentrons/hardware_control/instruments/ot3/pipette_handler.py +1030 -0
  149. opentrons/hardware_control/module_control.py +332 -0
  150. opentrons/hardware_control/modules/__init__.py +69 -0
  151. opentrons/hardware_control/modules/absorbance_reader.py +373 -0
  152. opentrons/hardware_control/modules/errors.py +7 -0
  153. opentrons/hardware_control/modules/flex_stacker.py +948 -0
  154. opentrons/hardware_control/modules/heater_shaker.py +426 -0
  155. opentrons/hardware_control/modules/lid_temp_status.py +35 -0
  156. opentrons/hardware_control/modules/magdeck.py +233 -0
  157. opentrons/hardware_control/modules/mod_abc.py +245 -0
  158. opentrons/hardware_control/modules/module_calibration.py +93 -0
  159. opentrons/hardware_control/modules/plate_temp_status.py +61 -0
  160. opentrons/hardware_control/modules/tempdeck.py +299 -0
  161. opentrons/hardware_control/modules/thermocycler.py +731 -0
  162. opentrons/hardware_control/modules/types.py +417 -0
  163. opentrons/hardware_control/modules/update.py +255 -0
  164. opentrons/hardware_control/modules/utils.py +73 -0
  165. opentrons/hardware_control/motion_utilities.py +318 -0
  166. opentrons/hardware_control/nozzle_manager.py +422 -0
  167. opentrons/hardware_control/ot3_calibration.py +1171 -0
  168. opentrons/hardware_control/ot3api.py +3227 -0
  169. opentrons/hardware_control/pause_manager.py +31 -0
  170. opentrons/hardware_control/poller.py +112 -0
  171. opentrons/hardware_control/protocols/__init__.py +106 -0
  172. opentrons/hardware_control/protocols/asyncio_configurable.py +11 -0
  173. opentrons/hardware_control/protocols/calibratable.py +45 -0
  174. opentrons/hardware_control/protocols/chassis_accessory_manager.py +90 -0
  175. opentrons/hardware_control/protocols/configurable.py +48 -0
  176. opentrons/hardware_control/protocols/event_sourcer.py +18 -0
  177. opentrons/hardware_control/protocols/execution_controllable.py +33 -0
  178. opentrons/hardware_control/protocols/flex_calibratable.py +96 -0
  179. opentrons/hardware_control/protocols/flex_instrument_configurer.py +52 -0
  180. opentrons/hardware_control/protocols/gripper_controller.py +55 -0
  181. opentrons/hardware_control/protocols/hardware_manager.py +51 -0
  182. opentrons/hardware_control/protocols/identifiable.py +16 -0
  183. opentrons/hardware_control/protocols/instrument_configurer.py +206 -0
  184. opentrons/hardware_control/protocols/liquid_handler.py +266 -0
  185. opentrons/hardware_control/protocols/module_provider.py +16 -0
  186. opentrons/hardware_control/protocols/motion_controller.py +243 -0
  187. opentrons/hardware_control/protocols/position_estimator.py +45 -0
  188. opentrons/hardware_control/protocols/simulatable.py +10 -0
  189. opentrons/hardware_control/protocols/stoppable.py +9 -0
  190. opentrons/hardware_control/protocols/types.py +27 -0
  191. opentrons/hardware_control/robot_calibration.py +224 -0
  192. opentrons/hardware_control/scripts/README.md +28 -0
  193. opentrons/hardware_control/scripts/__init__.py +1 -0
  194. opentrons/hardware_control/scripts/gripper_control.py +208 -0
  195. opentrons/hardware_control/scripts/ot3gripper +7 -0
  196. opentrons/hardware_control/scripts/ot3repl +7 -0
  197. opentrons/hardware_control/scripts/repl.py +187 -0
  198. opentrons/hardware_control/scripts/tc_control.py +97 -0
  199. opentrons/hardware_control/scripts/update_module_fw.py +274 -0
  200. opentrons/hardware_control/simulator_setup.py +260 -0
  201. opentrons/hardware_control/thread_manager.py +431 -0
  202. opentrons/hardware_control/threaded_async_lock.py +97 -0
  203. opentrons/hardware_control/types.py +792 -0
  204. opentrons/hardware_control/util.py +234 -0
  205. opentrons/legacy_broker.py +53 -0
  206. opentrons/legacy_commands/__init__.py +1 -0
  207. opentrons/legacy_commands/commands.py +483 -0
  208. opentrons/legacy_commands/helpers.py +153 -0
  209. opentrons/legacy_commands/module_commands.py +276 -0
  210. opentrons/legacy_commands/protocol_commands.py +54 -0
  211. opentrons/legacy_commands/publisher.py +155 -0
  212. opentrons/legacy_commands/robot_commands.py +51 -0
  213. opentrons/legacy_commands/types.py +1186 -0
  214. opentrons/motion_planning/__init__.py +32 -0
  215. opentrons/motion_planning/adjacent_slots_getters.py +168 -0
  216. opentrons/motion_planning/deck_conflict.py +501 -0
  217. opentrons/motion_planning/errors.py +35 -0
  218. opentrons/motion_planning/types.py +42 -0
  219. opentrons/motion_planning/waypoints.py +218 -0
  220. opentrons/ordered_set.py +138 -0
  221. opentrons/protocol_api/__init__.py +105 -0
  222. opentrons/protocol_api/_liquid.py +157 -0
  223. opentrons/protocol_api/_liquid_properties.py +814 -0
  224. opentrons/protocol_api/_nozzle_layout.py +31 -0
  225. opentrons/protocol_api/_parameter_context.py +300 -0
  226. opentrons/protocol_api/_parameters.py +31 -0
  227. opentrons/protocol_api/_transfer_liquid_validation.py +108 -0
  228. opentrons/protocol_api/_types.py +43 -0
  229. opentrons/protocol_api/config.py +23 -0
  230. opentrons/protocol_api/core/__init__.py +23 -0
  231. opentrons/protocol_api/core/common.py +33 -0
  232. opentrons/protocol_api/core/core_map.py +74 -0
  233. opentrons/protocol_api/core/engine/__init__.py +22 -0
  234. opentrons/protocol_api/core/engine/_default_labware_versions.py +179 -0
  235. opentrons/protocol_api/core/engine/deck_conflict.py +400 -0
  236. opentrons/protocol_api/core/engine/exceptions.py +19 -0
  237. opentrons/protocol_api/core/engine/instrument.py +2391 -0
  238. opentrons/protocol_api/core/engine/labware.py +238 -0
  239. opentrons/protocol_api/core/engine/load_labware_params.py +73 -0
  240. opentrons/protocol_api/core/engine/module_core.py +1027 -0
  241. opentrons/protocol_api/core/engine/overlap_versions.py +20 -0
  242. opentrons/protocol_api/core/engine/pipette_movement_conflict.py +358 -0
  243. opentrons/protocol_api/core/engine/point_calculations.py +64 -0
  244. opentrons/protocol_api/core/engine/protocol.py +1153 -0
  245. opentrons/protocol_api/core/engine/robot.py +139 -0
  246. opentrons/protocol_api/core/engine/stringify.py +74 -0
  247. opentrons/protocol_api/core/engine/transfer_components_executor.py +1006 -0
  248. opentrons/protocol_api/core/engine/well.py +241 -0
  249. opentrons/protocol_api/core/instrument.py +459 -0
  250. opentrons/protocol_api/core/labware.py +151 -0
  251. opentrons/protocol_api/core/legacy/__init__.py +11 -0
  252. opentrons/protocol_api/core/legacy/_labware_geometry.py +37 -0
  253. opentrons/protocol_api/core/legacy/deck.py +369 -0
  254. opentrons/protocol_api/core/legacy/labware_offset_provider.py +108 -0
  255. opentrons/protocol_api/core/legacy/legacy_instrument_core.py +709 -0
  256. opentrons/protocol_api/core/legacy/legacy_labware_core.py +235 -0
  257. opentrons/protocol_api/core/legacy/legacy_module_core.py +592 -0
  258. opentrons/protocol_api/core/legacy/legacy_protocol_core.py +612 -0
  259. opentrons/protocol_api/core/legacy/legacy_well_core.py +162 -0
  260. opentrons/protocol_api/core/legacy/load_info.py +67 -0
  261. opentrons/protocol_api/core/legacy/module_geometry.py +547 -0
  262. opentrons/protocol_api/core/legacy/well_geometry.py +148 -0
  263. opentrons/protocol_api/core/legacy_simulator/__init__.py +16 -0
  264. opentrons/protocol_api/core/legacy_simulator/legacy_instrument_core.py +624 -0
  265. opentrons/protocol_api/core/legacy_simulator/legacy_protocol_core.py +85 -0
  266. opentrons/protocol_api/core/module.py +484 -0
  267. opentrons/protocol_api/core/protocol.py +311 -0
  268. opentrons/protocol_api/core/robot.py +51 -0
  269. opentrons/protocol_api/core/well.py +116 -0
  270. opentrons/protocol_api/core/well_grid.py +45 -0
  271. opentrons/protocol_api/create_protocol_context.py +177 -0
  272. opentrons/protocol_api/deck.py +223 -0
  273. opentrons/protocol_api/disposal_locations.py +244 -0
  274. opentrons/protocol_api/instrument_context.py +3272 -0
  275. opentrons/protocol_api/labware.py +1579 -0
  276. opentrons/protocol_api/module_contexts.py +1447 -0
  277. opentrons/protocol_api/module_validation_and_errors.py +61 -0
  278. opentrons/protocol_api/protocol_context.py +1688 -0
  279. opentrons/protocol_api/robot_context.py +303 -0
  280. opentrons/protocol_api/validation.py +761 -0
  281. opentrons/protocol_engine/__init__.py +155 -0
  282. opentrons/protocol_engine/actions/__init__.py +65 -0
  283. opentrons/protocol_engine/actions/action_dispatcher.py +30 -0
  284. opentrons/protocol_engine/actions/action_handler.py +13 -0
  285. opentrons/protocol_engine/actions/actions.py +302 -0
  286. opentrons/protocol_engine/actions/get_state_update.py +38 -0
  287. opentrons/protocol_engine/clients/__init__.py +5 -0
  288. opentrons/protocol_engine/clients/sync_client.py +174 -0
  289. opentrons/protocol_engine/clients/transports.py +197 -0
  290. opentrons/protocol_engine/commands/__init__.py +757 -0
  291. opentrons/protocol_engine/commands/absorbance_reader/__init__.py +61 -0
  292. opentrons/protocol_engine/commands/absorbance_reader/close_lid.py +154 -0
  293. opentrons/protocol_engine/commands/absorbance_reader/common.py +6 -0
  294. opentrons/protocol_engine/commands/absorbance_reader/initialize.py +151 -0
  295. opentrons/protocol_engine/commands/absorbance_reader/open_lid.py +154 -0
  296. opentrons/protocol_engine/commands/absorbance_reader/read.py +226 -0
  297. opentrons/protocol_engine/commands/air_gap_in_place.py +162 -0
  298. opentrons/protocol_engine/commands/aspirate.py +244 -0
  299. opentrons/protocol_engine/commands/aspirate_in_place.py +184 -0
  300. opentrons/protocol_engine/commands/aspirate_while_tracking.py +211 -0
  301. opentrons/protocol_engine/commands/blow_out.py +146 -0
  302. opentrons/protocol_engine/commands/blow_out_in_place.py +119 -0
  303. opentrons/protocol_engine/commands/calibration/__init__.py +60 -0
  304. opentrons/protocol_engine/commands/calibration/calibrate_gripper.py +166 -0
  305. opentrons/protocol_engine/commands/calibration/calibrate_module.py +117 -0
  306. opentrons/protocol_engine/commands/calibration/calibrate_pipette.py +96 -0
  307. opentrons/protocol_engine/commands/calibration/move_to_maintenance_position.py +156 -0
  308. opentrons/protocol_engine/commands/command.py +308 -0
  309. opentrons/protocol_engine/commands/command_unions.py +974 -0
  310. opentrons/protocol_engine/commands/comment.py +57 -0
  311. opentrons/protocol_engine/commands/configure_for_volume.py +108 -0
  312. opentrons/protocol_engine/commands/configure_nozzle_layout.py +115 -0
  313. opentrons/protocol_engine/commands/custom.py +67 -0
  314. opentrons/protocol_engine/commands/dispense.py +194 -0
  315. opentrons/protocol_engine/commands/dispense_in_place.py +179 -0
  316. opentrons/protocol_engine/commands/dispense_while_tracking.py +204 -0
  317. opentrons/protocol_engine/commands/drop_tip.py +232 -0
  318. opentrons/protocol_engine/commands/drop_tip_in_place.py +205 -0
  319. opentrons/protocol_engine/commands/flex_stacker/__init__.py +64 -0
  320. opentrons/protocol_engine/commands/flex_stacker/common.py +900 -0
  321. opentrons/protocol_engine/commands/flex_stacker/empty.py +293 -0
  322. opentrons/protocol_engine/commands/flex_stacker/fill.py +281 -0
  323. opentrons/protocol_engine/commands/flex_stacker/retrieve.py +339 -0
  324. opentrons/protocol_engine/commands/flex_stacker/set_stored_labware.py +328 -0
  325. opentrons/protocol_engine/commands/flex_stacker/store.py +339 -0
  326. opentrons/protocol_engine/commands/generate_command_schema.py +61 -0
  327. opentrons/protocol_engine/commands/get_next_tip.py +134 -0
  328. opentrons/protocol_engine/commands/get_tip_presence.py +87 -0
  329. opentrons/protocol_engine/commands/hash_command_params.py +38 -0
  330. opentrons/protocol_engine/commands/heater_shaker/__init__.py +102 -0
  331. opentrons/protocol_engine/commands/heater_shaker/close_labware_latch.py +83 -0
  332. opentrons/protocol_engine/commands/heater_shaker/deactivate_heater.py +82 -0
  333. opentrons/protocol_engine/commands/heater_shaker/deactivate_shaker.py +84 -0
  334. opentrons/protocol_engine/commands/heater_shaker/open_labware_latch.py +110 -0
  335. opentrons/protocol_engine/commands/heater_shaker/set_and_wait_for_shake_speed.py +125 -0
  336. opentrons/protocol_engine/commands/heater_shaker/set_target_temperature.py +90 -0
  337. opentrons/protocol_engine/commands/heater_shaker/wait_for_temperature.py +102 -0
  338. opentrons/protocol_engine/commands/home.py +100 -0
  339. opentrons/protocol_engine/commands/identify_module.py +86 -0
  340. opentrons/protocol_engine/commands/labware_handling_common.py +29 -0
  341. opentrons/protocol_engine/commands/liquid_probe.py +464 -0
  342. opentrons/protocol_engine/commands/load_labware.py +210 -0
  343. opentrons/protocol_engine/commands/load_lid.py +154 -0
  344. opentrons/protocol_engine/commands/load_lid_stack.py +272 -0
  345. opentrons/protocol_engine/commands/load_liquid.py +95 -0
  346. opentrons/protocol_engine/commands/load_liquid_class.py +144 -0
  347. opentrons/protocol_engine/commands/load_module.py +223 -0
  348. opentrons/protocol_engine/commands/load_pipette.py +167 -0
  349. opentrons/protocol_engine/commands/magnetic_module/__init__.py +32 -0
  350. opentrons/protocol_engine/commands/magnetic_module/disengage.py +97 -0
  351. opentrons/protocol_engine/commands/magnetic_module/engage.py +119 -0
  352. opentrons/protocol_engine/commands/move_labware.py +546 -0
  353. opentrons/protocol_engine/commands/move_relative.py +102 -0
  354. opentrons/protocol_engine/commands/move_to_addressable_area.py +176 -0
  355. opentrons/protocol_engine/commands/move_to_addressable_area_for_drop_tip.py +198 -0
  356. opentrons/protocol_engine/commands/move_to_coordinates.py +107 -0
  357. opentrons/protocol_engine/commands/move_to_well.py +119 -0
  358. opentrons/protocol_engine/commands/movement_common.py +338 -0
  359. opentrons/protocol_engine/commands/pick_up_tip.py +241 -0
  360. opentrons/protocol_engine/commands/pipetting_common.py +443 -0
  361. opentrons/protocol_engine/commands/prepare_to_aspirate.py +121 -0
  362. opentrons/protocol_engine/commands/pressure_dispense.py +155 -0
  363. opentrons/protocol_engine/commands/reload_labware.py +90 -0
  364. opentrons/protocol_engine/commands/retract_axis.py +75 -0
  365. opentrons/protocol_engine/commands/robot/__init__.py +70 -0
  366. opentrons/protocol_engine/commands/robot/close_gripper_jaw.py +96 -0
  367. opentrons/protocol_engine/commands/robot/common.py +18 -0
  368. opentrons/protocol_engine/commands/robot/move_axes_relative.py +101 -0
  369. opentrons/protocol_engine/commands/robot/move_axes_to.py +100 -0
  370. opentrons/protocol_engine/commands/robot/move_to.py +94 -0
  371. opentrons/protocol_engine/commands/robot/open_gripper_jaw.py +86 -0
  372. opentrons/protocol_engine/commands/save_position.py +109 -0
  373. opentrons/protocol_engine/commands/seal_pipette_to_tip.py +353 -0
  374. opentrons/protocol_engine/commands/set_rail_lights.py +67 -0
  375. opentrons/protocol_engine/commands/set_status_bar.py +89 -0
  376. opentrons/protocol_engine/commands/temperature_module/__init__.py +46 -0
  377. opentrons/protocol_engine/commands/temperature_module/deactivate.py +86 -0
  378. opentrons/protocol_engine/commands/temperature_module/set_target_temperature.py +97 -0
  379. opentrons/protocol_engine/commands/temperature_module/wait_for_temperature.py +104 -0
  380. opentrons/protocol_engine/commands/thermocycler/__init__.py +152 -0
  381. opentrons/protocol_engine/commands/thermocycler/close_lid.py +87 -0
  382. opentrons/protocol_engine/commands/thermocycler/deactivate_block.py +80 -0
  383. opentrons/protocol_engine/commands/thermocycler/deactivate_lid.py +80 -0
  384. opentrons/protocol_engine/commands/thermocycler/open_lid.py +87 -0
  385. opentrons/protocol_engine/commands/thermocycler/run_extended_profile.py +171 -0
  386. opentrons/protocol_engine/commands/thermocycler/run_profile.py +124 -0
  387. opentrons/protocol_engine/commands/thermocycler/set_target_block_temperature.py +140 -0
  388. opentrons/protocol_engine/commands/thermocycler/set_target_lid_temperature.py +100 -0
  389. opentrons/protocol_engine/commands/thermocycler/wait_for_block_temperature.py +93 -0
  390. opentrons/protocol_engine/commands/thermocycler/wait_for_lid_temperature.py +89 -0
  391. opentrons/protocol_engine/commands/touch_tip.py +189 -0
  392. opentrons/protocol_engine/commands/unsafe/__init__.py +161 -0
  393. opentrons/protocol_engine/commands/unsafe/unsafe_blow_out_in_place.py +100 -0
  394. opentrons/protocol_engine/commands/unsafe/unsafe_drop_tip_in_place.py +121 -0
  395. opentrons/protocol_engine/commands/unsafe/unsafe_engage_axes.py +82 -0
  396. opentrons/protocol_engine/commands/unsafe/unsafe_place_labware.py +208 -0
  397. opentrons/protocol_engine/commands/unsafe/unsafe_stacker_close_latch.py +94 -0
  398. opentrons/protocol_engine/commands/unsafe/unsafe_stacker_manual_retrieve.py +295 -0
  399. opentrons/protocol_engine/commands/unsafe/unsafe_stacker_open_latch.py +91 -0
  400. opentrons/protocol_engine/commands/unsafe/unsafe_stacker_prepare_shuttle.py +136 -0
  401. opentrons/protocol_engine/commands/unsafe/unsafe_ungrip_labware.py +77 -0
  402. opentrons/protocol_engine/commands/unsafe/update_position_estimators.py +90 -0
  403. opentrons/protocol_engine/commands/unseal_pipette_from_tip.py +153 -0
  404. opentrons/protocol_engine/commands/verify_tip_presence.py +100 -0
  405. opentrons/protocol_engine/commands/wait_for_duration.py +76 -0
  406. opentrons/protocol_engine/commands/wait_for_resume.py +75 -0
  407. opentrons/protocol_engine/create_protocol_engine.py +193 -0
  408. opentrons/protocol_engine/engine_support.py +28 -0
  409. opentrons/protocol_engine/error_recovery_policy.py +81 -0
  410. opentrons/protocol_engine/errors/__init__.py +191 -0
  411. opentrons/protocol_engine/errors/error_occurrence.py +182 -0
  412. opentrons/protocol_engine/errors/exceptions.py +1308 -0
  413. opentrons/protocol_engine/execution/__init__.py +50 -0
  414. opentrons/protocol_engine/execution/command_executor.py +216 -0
  415. opentrons/protocol_engine/execution/create_queue_worker.py +102 -0
  416. opentrons/protocol_engine/execution/door_watcher.py +119 -0
  417. opentrons/protocol_engine/execution/equipment.py +819 -0
  418. opentrons/protocol_engine/execution/error_recovery_hardware_state_synchronizer.py +101 -0
  419. opentrons/protocol_engine/execution/gantry_mover.py +686 -0
  420. opentrons/protocol_engine/execution/hardware_stopper.py +147 -0
  421. opentrons/protocol_engine/execution/heater_shaker_movement_flagger.py +207 -0
  422. opentrons/protocol_engine/execution/labware_movement.py +297 -0
  423. opentrons/protocol_engine/execution/movement.py +350 -0
  424. opentrons/protocol_engine/execution/pipetting.py +607 -0
  425. opentrons/protocol_engine/execution/queue_worker.py +86 -0
  426. opentrons/protocol_engine/execution/rail_lights.py +25 -0
  427. opentrons/protocol_engine/execution/run_control.py +33 -0
  428. opentrons/protocol_engine/execution/status_bar.py +34 -0
  429. opentrons/protocol_engine/execution/thermocycler_movement_flagger.py +188 -0
  430. opentrons/protocol_engine/execution/thermocycler_plate_lifter.py +81 -0
  431. opentrons/protocol_engine/execution/tip_handler.py +550 -0
  432. opentrons/protocol_engine/labware_offset_standardization.py +194 -0
  433. opentrons/protocol_engine/notes/__init__.py +17 -0
  434. opentrons/protocol_engine/notes/notes.py +59 -0
  435. opentrons/protocol_engine/plugins.py +104 -0
  436. opentrons/protocol_engine/protocol_engine.py +683 -0
  437. opentrons/protocol_engine/resources/__init__.py +26 -0
  438. opentrons/protocol_engine/resources/deck_configuration_provider.py +232 -0
  439. opentrons/protocol_engine/resources/deck_data_provider.py +94 -0
  440. opentrons/protocol_engine/resources/file_provider.py +161 -0
  441. opentrons/protocol_engine/resources/fixture_validation.py +68 -0
  442. opentrons/protocol_engine/resources/labware_data_provider.py +106 -0
  443. opentrons/protocol_engine/resources/labware_validation.py +73 -0
  444. opentrons/protocol_engine/resources/model_utils.py +32 -0
  445. opentrons/protocol_engine/resources/module_data_provider.py +44 -0
  446. opentrons/protocol_engine/resources/ot3_validation.py +21 -0
  447. opentrons/protocol_engine/resources/pipette_data_provider.py +379 -0
  448. opentrons/protocol_engine/slot_standardization.py +128 -0
  449. opentrons/protocol_engine/state/__init__.py +1 -0
  450. opentrons/protocol_engine/state/_abstract_store.py +27 -0
  451. opentrons/protocol_engine/state/_axis_aligned_bounding_box.py +50 -0
  452. opentrons/protocol_engine/state/_labware_origin_math.py +636 -0
  453. opentrons/protocol_engine/state/_move_types.py +83 -0
  454. opentrons/protocol_engine/state/_well_math.py +193 -0
  455. opentrons/protocol_engine/state/addressable_areas.py +699 -0
  456. opentrons/protocol_engine/state/command_history.py +309 -0
  457. opentrons/protocol_engine/state/commands.py +1164 -0
  458. opentrons/protocol_engine/state/config.py +39 -0
  459. opentrons/protocol_engine/state/files.py +57 -0
  460. opentrons/protocol_engine/state/fluid_stack.py +138 -0
  461. opentrons/protocol_engine/state/geometry.py +2408 -0
  462. opentrons/protocol_engine/state/inner_well_math_utils.py +548 -0
  463. opentrons/protocol_engine/state/labware.py +1432 -0
  464. opentrons/protocol_engine/state/liquid_classes.py +82 -0
  465. opentrons/protocol_engine/state/liquids.py +73 -0
  466. opentrons/protocol_engine/state/module_substates/__init__.py +45 -0
  467. opentrons/protocol_engine/state/module_substates/absorbance_reader_substate.py +35 -0
  468. opentrons/protocol_engine/state/module_substates/flex_stacker_substate.py +112 -0
  469. opentrons/protocol_engine/state/module_substates/heater_shaker_module_substate.py +115 -0
  470. opentrons/protocol_engine/state/module_substates/magnetic_block_substate.py +17 -0
  471. opentrons/protocol_engine/state/module_substates/magnetic_module_substate.py +65 -0
  472. opentrons/protocol_engine/state/module_substates/temperature_module_substate.py +67 -0
  473. opentrons/protocol_engine/state/module_substates/thermocycler_module_substate.py +163 -0
  474. opentrons/protocol_engine/state/modules.py +1515 -0
  475. opentrons/protocol_engine/state/motion.py +373 -0
  476. opentrons/protocol_engine/state/pipettes.py +905 -0
  477. opentrons/protocol_engine/state/state.py +421 -0
  478. opentrons/protocol_engine/state/state_summary.py +36 -0
  479. opentrons/protocol_engine/state/tips.py +420 -0
  480. opentrons/protocol_engine/state/update_types.py +904 -0
  481. opentrons/protocol_engine/state/wells.py +290 -0
  482. opentrons/protocol_engine/types/__init__.py +310 -0
  483. opentrons/protocol_engine/types/automatic_tip_selection.py +39 -0
  484. opentrons/protocol_engine/types/command_annotations.py +53 -0
  485. opentrons/protocol_engine/types/deck_configuration.py +81 -0
  486. opentrons/protocol_engine/types/execution.py +96 -0
  487. opentrons/protocol_engine/types/hardware_passthrough.py +25 -0
  488. opentrons/protocol_engine/types/instrument.py +47 -0
  489. opentrons/protocol_engine/types/instrument_sensors.py +47 -0
  490. opentrons/protocol_engine/types/labware.py +131 -0
  491. opentrons/protocol_engine/types/labware_movement.py +22 -0
  492. opentrons/protocol_engine/types/labware_offset_location.py +111 -0
  493. opentrons/protocol_engine/types/labware_offset_vector.py +16 -0
  494. opentrons/protocol_engine/types/liquid.py +40 -0
  495. opentrons/protocol_engine/types/liquid_class.py +59 -0
  496. opentrons/protocol_engine/types/liquid_handling.py +13 -0
  497. opentrons/protocol_engine/types/liquid_level_detection.py +191 -0
  498. opentrons/protocol_engine/types/location.py +194 -0
  499. opentrons/protocol_engine/types/module.py +310 -0
  500. opentrons/protocol_engine/types/partial_tip_configuration.py +76 -0
  501. opentrons/protocol_engine/types/run_time_parameters.py +133 -0
  502. opentrons/protocol_engine/types/tip.py +18 -0
  503. opentrons/protocol_engine/types/util.py +21 -0
  504. opentrons/protocol_engine/types/well_position.py +124 -0
  505. opentrons/protocol_reader/__init__.py +37 -0
  506. opentrons/protocol_reader/extract_labware_definitions.py +66 -0
  507. opentrons/protocol_reader/file_format_validator.py +152 -0
  508. opentrons/protocol_reader/file_hasher.py +27 -0
  509. opentrons/protocol_reader/file_identifier.py +284 -0
  510. opentrons/protocol_reader/file_reader_writer.py +90 -0
  511. opentrons/protocol_reader/input_file.py +16 -0
  512. opentrons/protocol_reader/protocol_files_invalid_error.py +6 -0
  513. opentrons/protocol_reader/protocol_reader.py +188 -0
  514. opentrons/protocol_reader/protocol_source.py +124 -0
  515. opentrons/protocol_reader/role_analyzer.py +86 -0
  516. opentrons/protocol_runner/__init__.py +26 -0
  517. opentrons/protocol_runner/create_simulating_orchestrator.py +118 -0
  518. opentrons/protocol_runner/json_file_reader.py +55 -0
  519. opentrons/protocol_runner/json_translator.py +314 -0
  520. opentrons/protocol_runner/legacy_command_mapper.py +852 -0
  521. opentrons/protocol_runner/legacy_context_plugin.py +116 -0
  522. opentrons/protocol_runner/protocol_runner.py +530 -0
  523. opentrons/protocol_runner/python_protocol_wrappers.py +179 -0
  524. opentrons/protocol_runner/run_orchestrator.py +496 -0
  525. opentrons/protocol_runner/task_queue.py +95 -0
  526. opentrons/protocols/__init__.py +6 -0
  527. opentrons/protocols/advanced_control/__init__.py +0 -0
  528. opentrons/protocols/advanced_control/common.py +38 -0
  529. opentrons/protocols/advanced_control/mix.py +60 -0
  530. opentrons/protocols/advanced_control/transfers/__init__.py +0 -0
  531. opentrons/protocols/advanced_control/transfers/common.py +180 -0
  532. opentrons/protocols/advanced_control/transfers/transfer.py +972 -0
  533. opentrons/protocols/advanced_control/transfers/transfer_liquid_utils.py +231 -0
  534. opentrons/protocols/api_support/__init__.py +0 -0
  535. opentrons/protocols/api_support/constants.py +8 -0
  536. opentrons/protocols/api_support/deck_type.py +110 -0
  537. opentrons/protocols/api_support/definitions.py +18 -0
  538. opentrons/protocols/api_support/instrument.py +151 -0
  539. opentrons/protocols/api_support/labware_like.py +233 -0
  540. opentrons/protocols/api_support/tip_tracker.py +175 -0
  541. opentrons/protocols/api_support/types.py +32 -0
  542. opentrons/protocols/api_support/util.py +403 -0
  543. opentrons/protocols/bundle.py +89 -0
  544. opentrons/protocols/duration/__init__.py +4 -0
  545. opentrons/protocols/duration/errors.py +5 -0
  546. opentrons/protocols/duration/estimator.py +628 -0
  547. opentrons/protocols/execution/__init__.py +0 -0
  548. opentrons/protocols/execution/dev_types.py +181 -0
  549. opentrons/protocols/execution/errors.py +40 -0
  550. opentrons/protocols/execution/execute.py +84 -0
  551. opentrons/protocols/execution/execute_json_v3.py +275 -0
  552. opentrons/protocols/execution/execute_json_v4.py +359 -0
  553. opentrons/protocols/execution/execute_json_v5.py +28 -0
  554. opentrons/protocols/execution/execute_python.py +169 -0
  555. opentrons/protocols/execution/json_dispatchers.py +87 -0
  556. opentrons/protocols/execution/types.py +7 -0
  557. opentrons/protocols/geometry/__init__.py +0 -0
  558. opentrons/protocols/geometry/planning.py +297 -0
  559. opentrons/protocols/labware.py +312 -0
  560. opentrons/protocols/models/__init__.py +0 -0
  561. opentrons/protocols/models/json_protocol.py +679 -0
  562. opentrons/protocols/parameters/__init__.py +0 -0
  563. opentrons/protocols/parameters/csv_parameter_definition.py +77 -0
  564. opentrons/protocols/parameters/csv_parameter_interface.py +96 -0
  565. opentrons/protocols/parameters/exceptions.py +34 -0
  566. opentrons/protocols/parameters/parameter_definition.py +272 -0
  567. opentrons/protocols/parameters/types.py +17 -0
  568. opentrons/protocols/parameters/validation.py +267 -0
  569. opentrons/protocols/parse.py +671 -0
  570. opentrons/protocols/types.py +159 -0
  571. opentrons/py.typed +0 -0
  572. opentrons/resources/scripts/lpc21isp +0 -0
  573. opentrons/resources/smoothie-edge-8414642.hex +23010 -0
  574. opentrons/simulate.py +1065 -0
  575. opentrons/system/__init__.py +6 -0
  576. opentrons/system/camera.py +51 -0
  577. opentrons/system/log_control.py +59 -0
  578. opentrons/system/nmcli.py +856 -0
  579. opentrons/system/resin.py +24 -0
  580. opentrons/system/smoothie_update.py +15 -0
  581. opentrons/system/wifi.py +204 -0
  582. opentrons/tools/__init__.py +0 -0
  583. opentrons/tools/args_handler.py +22 -0
  584. opentrons/tools/write_pipette_memory.py +157 -0
  585. opentrons/types.py +618 -0
  586. opentrons/util/__init__.py +1 -0
  587. opentrons/util/async_helpers.py +166 -0
  588. opentrons/util/broker.py +84 -0
  589. opentrons/util/change_notifier.py +47 -0
  590. opentrons/util/entrypoint_util.py +278 -0
  591. opentrons/util/get_union_elements.py +26 -0
  592. opentrons/util/helpers.py +6 -0
  593. opentrons/util/linal.py +178 -0
  594. opentrons/util/logging_config.py +265 -0
  595. opentrons/util/logging_queue_handler.py +61 -0
  596. opentrons/util/performance_helpers.py +157 -0
  597. opentrons-8.6.0.dist-info/METADATA +37 -0
  598. opentrons-8.6.0.dist-info/RECORD +601 -0
  599. opentrons-8.6.0.dist-info/WHEEL +4 -0
  600. opentrons-8.6.0.dist-info/entry_points.txt +3 -0
  601. opentrons-8.6.0.dist-info/licenses/LICENSE +202 -0
@@ -0,0 +1,852 @@
1
+ """Translate events from a legacy ``ProtocolContext`` into Protocol Engine commands."""
2
+
3
+ from collections import defaultdict
4
+ from datetime import datetime
5
+ from typing import Dict, List, Optional, Tuple, Union
6
+
7
+ from opentrons.hardware_control.modules.types import (
8
+ ModuleModel as HardwareModuleModel,
9
+ TemperatureModuleModel,
10
+ MagneticModuleModel,
11
+ ThermocyclerModuleModel,
12
+ HeaterShakerModuleModel,
13
+ AbsorbanceReaderModel,
14
+ FlexStackerModuleModel,
15
+ )
16
+ from opentrons_shared_data.pipette.types import PipetteNameType
17
+ from opentrons.types import MountType, DeckSlotName, Location
18
+ from opentrons.legacy_commands import types as legacy_command_types
19
+ from opentrons.protocol_api import InstrumentContext
20
+ from opentrons.protocol_api.core.legacy.deck import FIXED_TRASH_ID
21
+ from opentrons.protocol_api.core.legacy.load_info import (
22
+ LoadInfo as LegacyLoadInfo,
23
+ LabwareLoadInfo as LegacyLabwareLoadInfo,
24
+ InstrumentLoadInfo as LegacyInstrumentLoadInfo,
25
+ ModuleLoadInfo as LegacyModuleLoadInfo,
26
+ )
27
+ from opentrons.protocol_engine import (
28
+ ProtocolEngineError,
29
+ actions as pe_actions,
30
+ commands as pe_commands,
31
+ types as pe_types,
32
+ )
33
+ from opentrons.protocol_engine.error_recovery_policy import ErrorRecoveryType
34
+ from opentrons.protocol_engine.resources import (
35
+ ModelUtils,
36
+ ModuleDataProvider,
37
+ pipette_data_provider,
38
+ )
39
+ from opentrons.protocol_engine.state.update_types import (
40
+ StateUpdate,
41
+ )
42
+
43
+ from opentrons_shared_data.labware.labware_definition import (
44
+ labware_definition_type_adapter,
45
+ )
46
+ from opentrons_shared_data.errors import ErrorCodes, EnumeratedError, PythonException
47
+
48
+
49
+ class LegacyCommandParams(pe_commands.CustomParams):
50
+ """Custom command data payload for mapped legacy commands."""
51
+
52
+ legacyCommandType: str
53
+ legacyCommandText: str
54
+
55
+
56
+ class LegacyContextCommandError(ProtocolEngineError):
57
+ """An error returned when a PAPIv2 ProtocolContext command fails."""
58
+
59
+ def __init__(self, wrapping_exc: BaseException) -> None:
60
+ if isinstance(wrapping_exc, EnumeratedError):
61
+ super().__init__(
62
+ wrapping_exc.code,
63
+ wrapping_exc.message,
64
+ wrapping_exc.detail,
65
+ wrapping_exc.wrapping,
66
+ )
67
+ else:
68
+ super().__init__(
69
+ code=ErrorCodes.GENERAL_ERROR,
70
+ message=str(wrapping_exc),
71
+ wrapping=[PythonException(wrapping_exc)],
72
+ )
73
+
74
+
75
+ _HARDWARE_TO_PE_MODULE: Dict[HardwareModuleModel, pe_types.ModuleModel] = {
76
+ MagneticModuleModel.MAGNETIC_V1: pe_types.ModuleModel.MAGNETIC_MODULE_V1,
77
+ MagneticModuleModel.MAGNETIC_V2: pe_types.ModuleModel.MAGNETIC_MODULE_V2,
78
+ TemperatureModuleModel.TEMPERATURE_V1: pe_types.ModuleModel.TEMPERATURE_MODULE_V1,
79
+ TemperatureModuleModel.TEMPERATURE_V2: pe_types.ModuleModel.TEMPERATURE_MODULE_V2,
80
+ ThermocyclerModuleModel.THERMOCYCLER_V1: pe_types.ModuleModel.THERMOCYCLER_MODULE_V1,
81
+ ThermocyclerModuleModel.THERMOCYCLER_V2: pe_types.ModuleModel.THERMOCYCLER_MODULE_V2,
82
+ HeaterShakerModuleModel.HEATER_SHAKER_V1: pe_types.ModuleModel.HEATER_SHAKER_MODULE_V1,
83
+ AbsorbanceReaderModel.ABSORBANCE_READER_V1: pe_types.ModuleModel.ABSORBANCE_READER_V1,
84
+ FlexStackerModuleModel.FLEX_STACKER_V1: pe_types.ModuleModel.FLEX_STACKER_MODULE_V1,
85
+ }
86
+
87
+ _HIGHER_ORDER_COMMAND_TYPES = {
88
+ legacy_command_types.MIX,
89
+ legacy_command_types.CONSOLIDATE,
90
+ legacy_command_types.DISTRIBUTE,
91
+ legacy_command_types.TRANSFER,
92
+ legacy_command_types.RETURN_TIP,
93
+ legacy_command_types.AIR_GAP,
94
+ }
95
+
96
+
97
+ class LegacyCommandMapper:
98
+ """Map broker commands to protocol engine commands.
99
+
100
+ Each protocol should use its own instance of this class.
101
+ """
102
+
103
+ def __init__(
104
+ self, module_data_provider: Optional[ModuleDataProvider] = None
105
+ ) -> None:
106
+ """Initialize the command mapper."""
107
+ # commands keyed by broker message ID
108
+ self._commands_by_broker_id: Dict[str, pe_commands.Command] = {}
109
+
110
+ # running count of each legacy command type, to construct IDs
111
+ self._command_count: Dict[str, int] = defaultdict(lambda: 0)
112
+
113
+ # equipment IDs by physical location
114
+ self._labware_id_by_slot: Dict[DeckSlotName, str] = {
115
+ DeckSlotName.FIXED_TRASH: FIXED_TRASH_ID
116
+ }
117
+ self._labware_id_by_module_id: Dict[str, str] = {}
118
+ self._pipette_id_by_mount: Dict[MountType, str] = {}
119
+ self._module_id_by_slot: Dict[DeckSlotName, str] = {}
120
+
121
+ # module definition state and provider depedency
122
+ self._module_definition_by_model: Dict[
123
+ pe_types.ModuleModel, pe_types.ModuleDefinition
124
+ ] = {}
125
+ self._module_data_provider = module_data_provider or ModuleDataProvider()
126
+
127
+ def map_command( # noqa: C901
128
+ self,
129
+ command: legacy_command_types.CommandMessage,
130
+ ) -> List[pe_actions.Action]:
131
+ """Map a legacy Broker command to a ProtocolEngine command.
132
+
133
+ A "before" message from the Broker
134
+ is mapped to a ``RUNNING`` ProtocolEngine command.
135
+
136
+ An "after" message from the Broker
137
+ is mapped to a ``SUCCEEDED`` ProtocolEngine command.
138
+ It has the same ID as the original ``RUNNING`` command,
139
+ so when you send it to the ProtocolEngine, it will update the original
140
+ command's status in-place.
141
+ """
142
+ command_type = command["name"]
143
+
144
+ if command_type in _HIGHER_ORDER_COMMAND_TYPES:
145
+ return []
146
+
147
+ command_error = command["error"]
148
+ stage = command["$"]
149
+ # TODO(mc, 2021-12-08): use message ID as command ID directly once
150
+ # https://github.com/Opentrons/opentrons/issues/8986 is resolved
151
+ broker_id = command["id"]
152
+ now = ModelUtils.get_timestamp()
153
+
154
+ results: List[pe_actions.Action] = []
155
+
156
+ if stage == "before":
157
+ count = self._command_count[command_type]
158
+ command_id = f"{command_type}-{count}"
159
+ command_create, running_command = self._build_initial_command(
160
+ command, command_id, now
161
+ )
162
+
163
+ self._command_count[command_type] = count + 1
164
+ self._commands_by_broker_id[broker_id] = running_command
165
+
166
+ results.append(
167
+ pe_actions.QueueCommandAction(
168
+ command_id=command_id,
169
+ created_at=running_command.createdAt,
170
+ request=command_create,
171
+ request_hash=None,
172
+ )
173
+ )
174
+ assert running_command.startedAt is not None
175
+ results.append(
176
+ pe_actions.RunCommandAction(
177
+ running_command.id, started_at=running_command.startedAt
178
+ )
179
+ )
180
+
181
+ elif stage == "after":
182
+ running_command = self._commands_by_broker_id[broker_id]
183
+ completed_command: pe_commands.Command
184
+ if command_error is None:
185
+ if isinstance(running_command, pe_commands.PickUpTip):
186
+ completed_command = running_command.model_copy(
187
+ update={
188
+ "result": pe_commands.PickUpTipResult.model_construct(
189
+ tipVolume=command["payload"]["location"].max_volume, # type: ignore[typeddict-item]
190
+ tipLength=command["payload"]["instrument"].hw_pipette[ # type: ignore[typeddict-item]
191
+ "tip_length"
192
+ ],
193
+ position=pe_types.DeckPoint(x=0, y=0, z=0),
194
+ ),
195
+ "status": pe_commands.CommandStatus.SUCCEEDED,
196
+ "completedAt": now,
197
+ "notes": [],
198
+ }
199
+ )
200
+ elif isinstance(running_command, pe_commands.DropTip):
201
+ completed_command = running_command.model_copy(
202
+ update={
203
+ "result": pe_commands.DropTipResult.model_construct(
204
+ position=pe_types.DeckPoint(x=0, y=0, z=0)
205
+ ),
206
+ "status": pe_commands.CommandStatus.SUCCEEDED,
207
+ "completedAt": now,
208
+ "notes": [],
209
+ }
210
+ )
211
+ elif isinstance(running_command, pe_commands.Aspirate):
212
+ completed_command = running_command.model_copy(
213
+ update={
214
+ # Don't .model_construct() result, because we want to validate
215
+ # volume.
216
+ "result": pe_commands.AspirateResult(
217
+ volume=running_command.params.volume,
218
+ position=pe_types.DeckPoint(x=0, y=0, z=0),
219
+ ),
220
+ "status": pe_commands.CommandStatus.SUCCEEDED,
221
+ "completedAt": now,
222
+ "notes": [],
223
+ }
224
+ )
225
+ elif isinstance(running_command, pe_commands.Dispense):
226
+ completed_command = running_command.model_copy(
227
+ update={
228
+ # Don't .model_construct() result, because we want to validate
229
+ # volume.
230
+ "result": pe_commands.DispenseResult(
231
+ volume=running_command.params.volume,
232
+ position=pe_types.DeckPoint(x=0, y=0, z=0),
233
+ ),
234
+ "status": pe_commands.CommandStatus.SUCCEEDED,
235
+ "completedAt": now,
236
+ "notes": [],
237
+ }
238
+ )
239
+ elif isinstance(running_command, pe_commands.BlowOut):
240
+ completed_command = running_command.model_copy(
241
+ update={
242
+ "result": pe_commands.BlowOutResult.model_construct(
243
+ position=pe_types.DeckPoint(x=0, y=0, z=0)
244
+ ),
245
+ "status": pe_commands.CommandStatus.SUCCEEDED,
246
+ "completedAt": now,
247
+ "notes": [],
248
+ }
249
+ )
250
+ elif isinstance(running_command, pe_commands.Comment):
251
+ completed_command = running_command.model_copy(
252
+ update={
253
+ "result": pe_commands.CommentResult.model_construct(),
254
+ "status": pe_commands.CommandStatus.SUCCEEDED,
255
+ "completedAt": now,
256
+ "notes": [],
257
+ }
258
+ )
259
+ elif isinstance(running_command, pe_commands.Custom):
260
+ completed_command = running_command.model_copy(
261
+ update={
262
+ "result": pe_commands.CustomResult.model_construct(),
263
+ "status": pe_commands.CommandStatus.SUCCEEDED,
264
+ "completedAt": now,
265
+ "notes": [],
266
+ }
267
+ )
268
+ else:
269
+ # TODO(mm, 2024-06-13): This looks potentially wrong.
270
+ # We're creating a `SUCCEEDED` command that does not have a `result`,
271
+ # which is not normally possible.
272
+ completed_command = running_command.model_copy(
273
+ update={
274
+ "status": pe_commands.CommandStatus.SUCCEEDED,
275
+ "completedAt": now,
276
+ "notes": [],
277
+ }
278
+ )
279
+ results.append(
280
+ pe_actions.SucceedCommandAction(
281
+ completed_command,
282
+ state_update=StateUpdate(),
283
+ )
284
+ )
285
+
286
+ if isinstance(completed_command, pe_commands.WaitForResume):
287
+ results.append(
288
+ pe_actions.PauseAction(source=pe_actions.PauseSource.PROTOCOL)
289
+ )
290
+
291
+ else:
292
+ results.append(
293
+ pe_actions.FailCommandAction(
294
+ command_id=running_command.id,
295
+ running_command=running_command,
296
+ error_id=ModelUtils.generate_id(),
297
+ failed_at=now,
298
+ error=LegacyContextCommandError(command_error),
299
+ notes=[],
300
+ # For legacy protocols, we don't attempt to support any kind
301
+ # of error recovery at the Protocol Engine level.
302
+ # These protocols only run on the OT-2, which doesn't have
303
+ # any recoverable errors, anyway.
304
+ type=ErrorRecoveryType.FAIL_RUN,
305
+ )
306
+ )
307
+
308
+ return results
309
+
310
+ def map_equipment_load(self, load_info: LegacyLoadInfo) -> List[pe_actions.Action]:
311
+ """Map a labware, instrument (pipette), or module load to a PE command."""
312
+ if isinstance(load_info, LegacyLabwareLoadInfo):
313
+ return self._map_labware_load(load_info)
314
+ elif isinstance(load_info, LegacyInstrumentLoadInfo):
315
+ return self._map_instrument_load(load_info)
316
+ elif isinstance(load_info, LegacyModuleLoadInfo):
317
+ return self._map_module_load(load_info)
318
+
319
+ def _build_initial_command(
320
+ self,
321
+ command: legacy_command_types.CommandMessage,
322
+ command_id: str,
323
+ now: datetime,
324
+ ) -> Tuple[pe_commands.CommandCreate, pe_commands.Command]:
325
+ if command["name"] == legacy_command_types.PICK_UP_TIP:
326
+ return self._build_pick_up_tip(
327
+ command=command, command_id=command_id, now=now
328
+ )
329
+ elif command["name"] == legacy_command_types.DROP_TIP:
330
+ return self._build_drop_tip(command=command, command_id=command_id, now=now)
331
+
332
+ elif (
333
+ command["name"] == legacy_command_types.ASPIRATE
334
+ or command["name"] == legacy_command_types.DISPENSE
335
+ ):
336
+ return self._build_liquid_handling(
337
+ command=command, command_id=command_id, now=now
338
+ )
339
+ elif command["name"] == legacy_command_types.BLOW_OUT:
340
+ return self._build_blow_out(command=command, command_id=command_id, now=now)
341
+ elif command["name"] == legacy_command_types.PAUSE:
342
+ wait_for_resume_running = pe_commands.WaitForResume.model_construct(
343
+ id=command_id,
344
+ key=command_id,
345
+ status=pe_commands.CommandStatus.RUNNING,
346
+ createdAt=now,
347
+ startedAt=now,
348
+ params=pe_commands.WaitForResumeParams.model_construct(
349
+ message=command["payload"]["userMessage"],
350
+ ),
351
+ )
352
+ wait_for_resume_create: pe_commands.CommandCreate = (
353
+ pe_commands.WaitForResumeCreate.model_construct(
354
+ key=wait_for_resume_running.key,
355
+ params=wait_for_resume_running.params,
356
+ )
357
+ )
358
+ return wait_for_resume_create, wait_for_resume_running
359
+ elif command["name"] == legacy_command_types.COMMENT:
360
+ comment_running = pe_commands.Comment.model_construct(
361
+ id=command_id,
362
+ key=command_id,
363
+ status=pe_commands.CommandStatus.RUNNING,
364
+ createdAt=now,
365
+ startedAt=now,
366
+ params=pe_commands.CommentParams.model_construct(
367
+ message=command["payload"]["text"],
368
+ ),
369
+ )
370
+ comment_create = pe_commands.CommentCreate.model_construct(
371
+ key=comment_running.key, params=comment_running.params
372
+ )
373
+ return comment_create, comment_running
374
+ else:
375
+ custom_running = pe_commands.Custom.model_construct(
376
+ id=command_id,
377
+ key=command_id,
378
+ status=pe_commands.CommandStatus.RUNNING,
379
+ createdAt=now,
380
+ startedAt=now,
381
+ params=LegacyCommandParams.model_construct(
382
+ legacyCommandType=command["name"],
383
+ legacyCommandText=command["payload"]["text"],
384
+ ),
385
+ )
386
+ custom_create = pe_commands.CustomCreate.model_construct(
387
+ key=custom_running.key,
388
+ params=custom_running.params,
389
+ )
390
+ return custom_create, custom_running
391
+
392
+ def _build_drop_tip(
393
+ self,
394
+ command: legacy_command_types.DropTipMessage,
395
+ command_id: str,
396
+ now: datetime,
397
+ ) -> Tuple[pe_commands.CommandCreate, pe_commands.Command]:
398
+ pipette: InstrumentContext = command["payload"]["instrument"]
399
+ well = command["payload"]["location"]
400
+ mount = MountType(pipette.mount)
401
+ # the following type checking suppression assumes the tiprack is not loaded on top of a module
402
+ slot = DeckSlotName.from_primitive(well.parent.parent) # type: ignore[arg-type]
403
+ well_name = well.well_name
404
+ labware_id = self._labware_id_by_slot[slot]
405
+ pipette_id = self._pipette_id_by_mount[mount]
406
+
407
+ running = pe_commands.DropTip.model_construct(
408
+ id=command_id,
409
+ key=command_id,
410
+ status=pe_commands.CommandStatus.RUNNING,
411
+ createdAt=now,
412
+ startedAt=now,
413
+ params=pe_commands.DropTipParams.model_construct(
414
+ pipetteId=pipette_id,
415
+ labwareId=labware_id,
416
+ wellName=well_name,
417
+ ),
418
+ )
419
+ create = pe_commands.DropTipCreate.model_construct(
420
+ key=running.key,
421
+ params=running.params,
422
+ )
423
+ return create, running
424
+
425
+ def _build_pick_up_tip(
426
+ self,
427
+ command: legacy_command_types.PickUpTipMessage,
428
+ command_id: str,
429
+ now: datetime,
430
+ ) -> Tuple[pe_commands.CommandCreate, pe_commands.Command]:
431
+ pipette: InstrumentContext = command["payload"]["instrument"]
432
+ location = command["payload"]["location"]
433
+ well = location
434
+ mount = MountType(pipette.mount)
435
+ # the following type checking suppression assumes the tiprack is not loaded on top of a module
436
+ slot = DeckSlotName.from_primitive(well.parent.parent) # type: ignore[arg-type]
437
+ well_name = well.well_name
438
+ labware_id = self._labware_id_by_slot[slot]
439
+ pipette_id = self._pipette_id_by_mount[mount]
440
+
441
+ running = pe_commands.PickUpTip.model_construct(
442
+ id=command_id,
443
+ key=command_id,
444
+ status=pe_commands.CommandStatus.RUNNING,
445
+ createdAt=now,
446
+ startedAt=now,
447
+ params=pe_commands.PickUpTipParams.model_construct(
448
+ pipetteId=pipette_id,
449
+ labwareId=labware_id,
450
+ wellName=well_name,
451
+ ),
452
+ )
453
+ create = pe_commands.PickUpTipCreate.model_construct(
454
+ key=running.key, params=running.params
455
+ )
456
+ return create, running
457
+
458
+ def _build_liquid_handling(
459
+ self,
460
+ command: Union[
461
+ legacy_command_types.AspirateMessage, legacy_command_types.DispenseMessage
462
+ ],
463
+ command_id: str,
464
+ now: datetime,
465
+ ) -> Tuple[pe_commands.CommandCreate, pe_commands.Command]:
466
+ pipette: InstrumentContext = command["payload"]["instrument"]
467
+ location = command["payload"]["location"]
468
+ volume = command["payload"]["volume"]
469
+ # TODO:(jr, 15.08.2022): aspirate and dispense commands with no specified labware
470
+ # get filtered into custom. Refactor this in followup legacy command mapping
471
+ if location.labware.is_well:
472
+ well = location.labware.as_well()
473
+ slot = DeckSlotName(location.labware.first_parent())
474
+ parent_module_id = self._module_id_by_slot.get(slot)
475
+ labware_id = (
476
+ self._labware_id_by_module_id[parent_module_id]
477
+ if parent_module_id is not None
478
+ else self._labware_id_by_slot[slot]
479
+ )
480
+ mount = MountType(pipette.mount)
481
+ well_name = well.well_name
482
+ pipette_id = self._pipette_id_by_mount[mount]
483
+
484
+ if volume == 0:
485
+ # In edge cases, it's possible for a Python protocol to do dispense()
486
+ # or aspirate() with a volume of 0, which behaves roughly like
487
+ # move_to(). Protocol Engine aspirate and dispense commands must have
488
+ # volume > 0, so we can't map into those.
489
+ #
490
+ # TODO(mm, 2024-03-22): I don't think this has been true since
491
+ # https://github.com/Opentrons/opentrons/pull/14211. Can we just use
492
+ # aspirate and dispense commands now?
493
+ move_to_well_running = pe_commands.MoveToWell.model_construct(
494
+ id=command_id,
495
+ key=command_id,
496
+ status=pe_commands.CommandStatus.RUNNING,
497
+ createdAt=now,
498
+ startedAt=now,
499
+ params=pe_commands.MoveToWellParams.model_construct(
500
+ pipetteId=pipette_id,
501
+ labwareId=labware_id,
502
+ wellName=well_name,
503
+ ),
504
+ )
505
+ move_to_well_create = pe_commands.MoveToWellCreate.model_construct(
506
+ key=move_to_well_running.key, params=move_to_well_running.params
507
+ )
508
+ return move_to_well_create, move_to_well_running
509
+ elif command["name"] == legacy_command_types.ASPIRATE:
510
+ flow_rate = command["payload"]["rate"] * pipette.flow_rate.aspirate
511
+ aspirate_running = pe_commands.Aspirate.model_construct(
512
+ id=command_id,
513
+ key=command_id,
514
+ status=pe_commands.CommandStatus.RUNNING,
515
+ createdAt=now,
516
+ startedAt=now,
517
+ # Don't .model_construct() params, because we want to validate
518
+ # volume and flowRate.
519
+ params=pe_commands.AspirateParams(
520
+ pipetteId=pipette_id,
521
+ labwareId=labware_id,
522
+ wellName=well_name,
523
+ volume=volume,
524
+ flowRate=flow_rate,
525
+ ),
526
+ )
527
+ aspirate_create = pe_commands.AspirateCreate.model_construct(
528
+ key=aspirate_running.key, params=aspirate_running.params
529
+ )
530
+ return aspirate_create, aspirate_running
531
+ else:
532
+ flow_rate = command["payload"]["rate"] * pipette.flow_rate.dispense
533
+ dispense_running = pe_commands.Dispense.model_construct(
534
+ id=command_id,
535
+ key=command_id,
536
+ status=pe_commands.CommandStatus.RUNNING,
537
+ createdAt=now,
538
+ startedAt=now,
539
+ # Don't .model_construct params, because we want to validate
540
+ # volume and flowRate.
541
+ params=pe_commands.DispenseParams(
542
+ pipetteId=pipette_id,
543
+ labwareId=labware_id,
544
+ wellName=well_name,
545
+ volume=volume,
546
+ flowRate=flow_rate,
547
+ ),
548
+ )
549
+ dispense_create = pe_commands.DispenseCreate.model_construct(
550
+ key=dispense_running.key, params=dispense_running.params
551
+ )
552
+ return dispense_create, dispense_running
553
+
554
+ else:
555
+ running = pe_commands.Custom.model_construct(
556
+ id=command_id,
557
+ key=command_id,
558
+ status=pe_commands.CommandStatus.RUNNING,
559
+ createdAt=now,
560
+ startedAt=now,
561
+ params=LegacyCommandParams.model_construct(
562
+ legacyCommandType=command["name"],
563
+ legacyCommandText=command["payload"]["text"],
564
+ ),
565
+ )
566
+ create = pe_commands.CustomCreate.model_construct(
567
+ key=running.key, params=running.params
568
+ )
569
+ return create, running
570
+
571
+ def _build_blow_out(
572
+ self,
573
+ command: legacy_command_types.BlowOutMessage,
574
+ command_id: str,
575
+ now: datetime,
576
+ ) -> Tuple[pe_commands.CommandCreate, pe_commands.Command]:
577
+ pipette: InstrumentContext = command["payload"]["instrument"]
578
+ location = command["payload"]["location"]
579
+ flow_rate = pipette.flow_rate.blow_out
580
+ # TODO:(jr, 15.08.2022): blow_out commands with no specified labware get filtered
581
+ # into custom. Remove location.labware.is_empty is False when refactor is complete
582
+ if isinstance(location, Location) and location.labware.is_well:
583
+ well = location.labware.as_well()
584
+ slot = DeckSlotName(location.labware.first_parent())
585
+ parent_module_id = self._module_id_by_slot.get(slot)
586
+ labware_id = (
587
+ self._labware_id_by_module_id[parent_module_id]
588
+ if parent_module_id is not None
589
+ else self._labware_id_by_slot[slot]
590
+ )
591
+ mount = MountType(pipette.mount)
592
+ well_name = well.well_name
593
+ pipette_id = self._pipette_id_by_mount[mount]
594
+
595
+ blow_out_running = pe_commands.BlowOut.model_construct(
596
+ id=command_id,
597
+ key=command_id,
598
+ status=pe_commands.CommandStatus.RUNNING,
599
+ createdAt=now,
600
+ startedAt=now,
601
+ # Don't .model_construct() params, because we want to validate flowRate.
602
+ params=pe_commands.BlowOutParams(
603
+ pipetteId=pipette_id,
604
+ labwareId=labware_id,
605
+ wellName=well_name,
606
+ flowRate=flow_rate,
607
+ ),
608
+ )
609
+ blow_out_create = pe_commands.BlowOutCreate.model_construct(
610
+ key=blow_out_running.key, params=blow_out_running.params
611
+ )
612
+ return blow_out_create, blow_out_running
613
+
614
+ # TODO:(jr, 15.08.2022): blow_out commands with no specified labware get filtered
615
+ # into custom. Refactor this in followup legacy command mapping
616
+ else:
617
+ custom_running = pe_commands.Custom.model_construct(
618
+ id=command_id,
619
+ key=command_id,
620
+ status=pe_commands.CommandStatus.RUNNING,
621
+ createdAt=now,
622
+ startedAt=now,
623
+ params=LegacyCommandParams.model_construct(
624
+ legacyCommandType=command["name"],
625
+ legacyCommandText=command["payload"]["text"],
626
+ ),
627
+ )
628
+ custom_create = pe_commands.CustomCreate.model_construct(
629
+ key=custom_running.key, params=custom_running.params
630
+ )
631
+ return custom_create, custom_running
632
+
633
+ def _map_labware_load(
634
+ self, labware_load_info: LegacyLabwareLoadInfo
635
+ ) -> List[pe_actions.Action]:
636
+ """Map a legacy labware load to a ProtocolEngine command."""
637
+ now = ModelUtils.get_timestamp()
638
+ count = self._command_count["LOAD_LABWARE"]
639
+ slot = labware_load_info.deck_slot
640
+ location: pe_types.LabwareLocation
641
+ location_sequence: pe_types.LabwareLocationSequence = []
642
+ if labware_load_info.on_module:
643
+ module_id = self._module_id_by_slot[slot]
644
+ location = pe_types.ModuleLocation.model_construct(moduleId=module_id)
645
+ location_sequence.append(
646
+ pe_types.OnModuleLocationSequenceComponent(moduleId=module_id)
647
+ )
648
+ else:
649
+ location = pe_types.DeckSlotLocation.model_construct(slotName=slot)
650
+
651
+ location_sequence.append(
652
+ pe_types.OnAddressableAreaLocationSequenceComponent(
653
+ addressableAreaName=slot.value
654
+ )
655
+ )
656
+ command_id = f"commands.LOAD_LABWARE-{count}"
657
+ labware_id = f"labware-{count}"
658
+ succeeded_command = pe_commands.LoadLabware(
659
+ id=command_id,
660
+ key=command_id,
661
+ status=pe_commands.CommandStatus.SUCCEEDED,
662
+ createdAt=now,
663
+ startedAt=now,
664
+ completedAt=now,
665
+ params=pe_commands.LoadLabwareParams.model_construct(
666
+ location=location,
667
+ loadName=labware_load_info.labware_load_name,
668
+ namespace=labware_load_info.labware_namespace,
669
+ version=labware_load_info.labware_version,
670
+ displayName=labware_load_info.labware_display_name,
671
+ ),
672
+ notes=[],
673
+ result=pe_commands.LoadLabwareResult.model_construct(
674
+ labwareId=labware_id,
675
+ definition=labware_definition_type_adapter.validate_python(
676
+ labware_load_info.labware_definition
677
+ ),
678
+ offsetId=labware_load_info.offset_id,
679
+ locationSequence=location_sequence,
680
+ ),
681
+ )
682
+ queue_action = pe_actions.QueueCommandAction(
683
+ command_id=succeeded_command.id,
684
+ created_at=succeeded_command.createdAt,
685
+ request=pe_commands.LoadLabwareCreate.model_construct(
686
+ key=succeeded_command.key, params=succeeded_command.params
687
+ ),
688
+ request_hash=None,
689
+ )
690
+ run_action = pe_actions.RunCommandAction(
691
+ command_id=succeeded_command.id,
692
+ # We just set this above, so we know it's not None.
693
+ started_at=succeeded_command.startedAt, # type: ignore[arg-type]
694
+ )
695
+ state_update = StateUpdate()
696
+ assert succeeded_command.result is not None
697
+ state_update.set_loaded_labware(
698
+ labware_id=labware_id,
699
+ definition=succeeded_command.result.definition,
700
+ display_name=labware_load_info.labware_display_name,
701
+ offset_id=labware_load_info.offset_id,
702
+ location=location,
703
+ )
704
+
705
+ succeed_action = pe_actions.SucceedCommandAction(
706
+ command=succeeded_command,
707
+ state_update=state_update,
708
+ )
709
+
710
+ self._command_count["LOAD_LABWARE"] = count + 1
711
+ if isinstance(location, pe_types.DeckSlotLocation):
712
+ self._labware_id_by_slot[location.slotName] = labware_id
713
+ elif isinstance(location, pe_types.ModuleLocation):
714
+ self._labware_id_by_module_id[location.moduleId] = labware_id
715
+
716
+ return [queue_action, run_action, succeed_action]
717
+
718
+ def _map_instrument_load(
719
+ self,
720
+ instrument_load_info: LegacyInstrumentLoadInfo,
721
+ ) -> List[pe_actions.Action]:
722
+ """Map a legacy instrument (pipette) load to a ProtocolEngine command.
723
+
724
+ Also creates a `AddPipetteConfigAction`, which is not necessary for the run,
725
+ but is needed for stop so tip geometry is in state for the HardwareStopper.
726
+ """
727
+ now = ModelUtils.get_timestamp()
728
+ count = self._command_count["LOAD_PIPETTE"]
729
+ command_id = f"commands.LOAD_PIPETTE-{count}"
730
+ pipette_id = f"pipette-{count}"
731
+ mount = MountType(str(instrument_load_info.mount).lower())
732
+
733
+ succeeded_command = pe_commands.LoadPipette.model_construct(
734
+ id=command_id,
735
+ key=command_id,
736
+ status=pe_commands.CommandStatus.SUCCEEDED,
737
+ createdAt=now,
738
+ startedAt=now,
739
+ completedAt=now,
740
+ params=pe_commands.LoadPipetteParams.model_construct(
741
+ pipetteName=PipetteNameType(instrument_load_info.instrument_load_name),
742
+ mount=mount,
743
+ ),
744
+ notes=[],
745
+ result=pe_commands.LoadPipetteResult.model_construct(pipetteId=pipette_id),
746
+ )
747
+ serial = instrument_load_info.pipette_dict.get("pipette_id", None) or ""
748
+ state_update = StateUpdate()
749
+ state_update.set_load_pipette(
750
+ pipette_id=pipette_id,
751
+ mount=succeeded_command.params.mount,
752
+ pipette_name=succeeded_command.params.pipetteName,
753
+ liquid_presence_detection=succeeded_command.params.liquidPresenceDetection,
754
+ )
755
+ state_update.update_pipette_config(
756
+ pipette_id=pipette_id,
757
+ serial_number=serial,
758
+ config=pipette_data_provider.get_pipette_static_config(
759
+ # Compatibility note - this is the version of tip overlap data, it stays at 0
760
+ # so protocol behavior does not change when you run a legacy JSON protocol
761
+ instrument_load_info.pipette_dict,
762
+ "v0",
763
+ ),
764
+ )
765
+ queue_action = pe_actions.QueueCommandAction(
766
+ command_id=succeeded_command.id,
767
+ created_at=succeeded_command.createdAt,
768
+ request=pe_commands.LoadPipetteCreate.model_construct(
769
+ key=succeeded_command.key, params=succeeded_command.params
770
+ ),
771
+ request_hash=None,
772
+ )
773
+ run_action = pe_actions.RunCommandAction(
774
+ command_id=succeeded_command.id,
775
+ # We just set this above, so we know it's not None.
776
+ started_at=succeeded_command.startedAt, # type: ignore[arg-type]
777
+ )
778
+
779
+ succeed_action = pe_actions.SucceedCommandAction(
780
+ command=succeeded_command,
781
+ state_update=state_update,
782
+ )
783
+
784
+ self._command_count["LOAD_PIPETTE"] = count + 1
785
+ self._pipette_id_by_mount[mount] = pipette_id
786
+
787
+ return [queue_action, run_action, succeed_action]
788
+
789
+ def _map_module_load(
790
+ self, module_load_info: LegacyModuleLoadInfo
791
+ ) -> List[pe_actions.Action]:
792
+ """Map a legacy module load to a Protocol Engine command."""
793
+ now = ModelUtils.get_timestamp()
794
+
795
+ count = self._command_count["LOAD_MODULE"]
796
+ command_id = f"commands.LOAD_MODULE-{count}"
797
+ module_id = f"module-{count}"
798
+ requested_model = _HARDWARE_TO_PE_MODULE[module_load_info.requested_model]
799
+ loaded_model = _HARDWARE_TO_PE_MODULE[module_load_info.loaded_model]
800
+
801
+ # This will fetch a V2 definition only. PAPI < v2.3 use V1 definitions.
802
+ # When running a < v2.3 protocol, there will be a mismatch of definitions used
803
+ # during analysis+LPC (V2) and protocol execution (V1).
804
+ # But this shouldn't result in any problems since V2 and V1 definitions
805
+ # have similar info, with V2 having additional info fields.
806
+ loaded_definition = self._module_definition_by_model.get(
807
+ loaded_model
808
+ ) or self._module_data_provider.get_definition(loaded_model)
809
+
810
+ succeeded_command = pe_commands.LoadModule.model_construct(
811
+ id=command_id,
812
+ key=command_id,
813
+ status=pe_commands.CommandStatus.SUCCEEDED,
814
+ createdAt=now,
815
+ startedAt=now,
816
+ completedAt=now,
817
+ params=pe_commands.LoadModuleParams.model_construct(
818
+ model=requested_model,
819
+ location=pe_types.DeckSlotLocation(
820
+ slotName=module_load_info.deck_slot,
821
+ ),
822
+ moduleId=module_id,
823
+ ),
824
+ notes=[],
825
+ result=pe_commands.LoadModuleResult.model_construct(
826
+ moduleId=module_id,
827
+ serialNumber=module_load_info.module_serial,
828
+ model=loaded_model,
829
+ ),
830
+ )
831
+ queue_action = pe_actions.QueueCommandAction(
832
+ command_id=succeeded_command.id,
833
+ created_at=succeeded_command.createdAt,
834
+ request=pe_commands.LoadModuleCreate.model_construct(
835
+ key=succeeded_command.key, params=succeeded_command.params
836
+ ),
837
+ request_hash=None,
838
+ )
839
+ run_action = pe_actions.RunCommandAction(
840
+ command_id=succeeded_command.id,
841
+ # We just set this above, so we know it's not None.
842
+ started_at=succeeded_command.startedAt, # type: ignore[arg-type]
843
+ )
844
+ succeed_action = pe_actions.SucceedCommandAction(
845
+ command=succeeded_command, state_update=StateUpdate()
846
+ )
847
+
848
+ self._command_count["LOAD_MODULE"] = count + 1
849
+ self._module_id_by_slot[module_load_info.deck_slot] = module_id
850
+ self._module_definition_by_model[loaded_model] = loaded_definition
851
+
852
+ return [queue_action, run_action, succeed_action]