niwrap-afni 0.6.2__py3-none-any.whl → 0.7.0__py3-none-any.whl

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Files changed (573) hide show
  1. niwrap_afni/afni/__init__.py +601 -18
  2. niwrap_afni/afni/abids_json_info_py.py +35 -51
  3. niwrap_afni/afni/abids_json_tool_py.py +48 -59
  4. niwrap_afni/afni/{abids_tool.py → abids_tool_py.py} +60 -78
  5. niwrap_afni/afni/adjunct_apqc_tsnr_general.py +83 -84
  6. niwrap_afni/afni/adjunct_aw_tableize_roi_info_py.py +31 -50
  7. niwrap_afni/afni/adjunct_calc_mont_dims_py.py +20 -43
  8. niwrap_afni/afni/adjunct_combine_str_py.py +29 -51
  9. niwrap_afni/afni/adjunct_is_label_py.py +22 -44
  10. niwrap_afni/afni/adjunct_make_script_and_rst_py.py +35 -55
  11. niwrap_afni/afni/adjunct_select_str_py.py +24 -45
  12. niwrap_afni/afni/{adjunct_simplify_cost.py → adjunct_simplify_cost_py.py} +49 -70
  13. niwrap_afni/afni/adjunct_suma_fs_mask_and_qc.py +36 -55
  14. niwrap_afni/afni/adjunct_suma_fs_roi_info.py +28 -48
  15. niwrap_afni/afni/adjunct_tort_plot_dp_align.py +38 -58
  16. niwrap_afni/afni/adwarp.py +43 -59
  17. niwrap_afni/afni/afni.py +77 -77
  18. niwrap_afni/afni/afni_batch_r.py +28 -47
  19. niwrap_afni/afni/afni_check_omp.py +21 -44
  20. niwrap_afni/afni/afni_history.py +72 -75
  21. niwrap_afni/afni/afni_open.py +49 -58
  22. niwrap_afni/afni/afni_proc_py.py +50 -64
  23. niwrap_afni/afni/afni_run_r.py +22 -44
  24. niwrap_afni/afni/afni_system_check_py.py +43 -57
  25. niwrap_afni/afni/aiv.py +33 -51
  26. niwrap_afni/afni/{align_epi_anat.py → align_epi_anat_py.py} +84 -92
  27. niwrap_afni/afni/analyze_trace.py +48 -61
  28. niwrap_afni/afni/{ap_run_simple_rest.py → ap_run_simple_rest_tcsh.py} +72 -90
  29. niwrap_afni/afni/{apqc_make_html.py → apqc_make_html_py.py} +45 -68
  30. niwrap_afni/afni/apqc_make_tcsh_py.py +34 -53
  31. niwrap_afni/afni/apsearch.py +26 -48
  32. niwrap_afni/afni/auto_warp_py.py +98 -89
  33. niwrap_afni/afni/balloon.py +33 -51
  34. niwrap_afni/afni/bayes_view.py +29 -50
  35. niwrap_afni/afni/bayesian_group_ana_py.py +57 -68
  36. niwrap_afni/afni/brain_skin.py +64 -76
  37. niwrap_afni/afni/build_afni_py.py +62 -71
  38. niwrap_afni/afni/cat_matvec.py +26 -46
  39. niwrap_afni/afni/ccalc.py +23 -45
  40. niwrap_afni/afni/cifti_tool.py +42 -58
  41. niwrap_afni/afni/cjpeg.py +34 -52
  42. niwrap_afni/afni/clust_exp_hist_table_py.py +33 -54
  43. niwrap_afni/afni/clust_exp_stat_parse_py.py +57 -69
  44. niwrap_afni/afni/column_cat.py +32 -54
  45. niwrap_afni/afni/compare_surfaces.py +58 -68
  46. niwrap_afni/afni/{convert_cdiflist_to_grads.py → convert_cdiflist_to_grads_py.py} +60 -78
  47. niwrap_afni/afni/convert_dset.py +73 -77
  48. niwrap_afni/afni/convert_surface.py +47 -62
  49. niwrap_afni/afni/convex_hull.py +68 -77
  50. niwrap_afni/afni/count.py +56 -66
  51. niwrap_afni/afni/create_icosahedron.py +44 -58
  52. niwrap_afni/afni/dcm2niix_afni.py +102 -98
  53. niwrap_afni/afni/dicom_hdr.py +39 -53
  54. niwrap_afni/afni/dicom_hinfo.py +31 -49
  55. niwrap_afni/afni/dicom_to_raw.py +21 -45
  56. niwrap_afni/afni/dimon.py +45 -64
  57. niwrap_afni/afni/djpeg.py +34 -52
  58. niwrap_afni/afni/drive_suma.py +99 -92
  59. niwrap_afni/afni/dsetstat2p.py +30 -49
  60. niwrap_afni/afni/dtistudio_fiberto_segments.py +26 -48
  61. niwrap_afni/afni/{epi_b0_correct.py → epi_b0_correct_py.py} +110 -111
  62. niwrap_afni/afni/examine_xmat.py +45 -62
  63. niwrap_afni/afni/fat_mat2d_plot_py.py +88 -86
  64. niwrap_afni/afni/fat_mat_sel_py.py +87 -89
  65. niwrap_afni/afni/{fat_mat_tableize.py → fat_mat_tableize_py.py} +72 -87
  66. niwrap_afni/afni/fat_mvm_gridconv_py.py +24 -51
  67. niwrap_afni/afni/{fat_mvm_prep.py → fat_mvm_prep_py.py} +61 -79
  68. niwrap_afni/afni/fat_mvm_scripter_py.py +53 -65
  69. niwrap_afni/afni/fat_proc_align_anat_pair.py +50 -63
  70. niwrap_afni/afni/fat_proc_axialize_anat.py +76 -79
  71. niwrap_afni/afni/fat_proc_connec_vis.py +56 -70
  72. niwrap_afni/afni/fat_proc_convert_dcm_anat.py +44 -59
  73. niwrap_afni/afni/fat_proc_convert_dcm_dwis.py +74 -79
  74. niwrap_afni/afni/fat_proc_decmap.py +51 -65
  75. niwrap_afni/afni/fat_proc_dwi_to_dt.py +94 -93
  76. niwrap_afni/afni/fat_proc_filter_dwis.py +47 -61
  77. niwrap_afni/afni/fat_proc_imit2w_from_t1w.py +41 -62
  78. niwrap_afni/afni/fat_proc_map_to_dti.py +53 -65
  79. niwrap_afni/afni/fat_proc_select_vols.py +38 -55
  80. niwrap_afni/afni/{fat_roi_row.py → fat_roi_row_py.py} +58 -79
  81. niwrap_afni/afni/fatcat_matplot.py +22 -44
  82. niwrap_afni/afni/fdrval.py +34 -51
  83. niwrap_afni/afni/fftest.py +26 -46
  84. niwrap_afni/afni/file_tool.py +111 -94
  85. niwrap_afni/afni/fim2.py +85 -87
  86. niwrap_afni/afni/{find_variance_lines.py → find_variance_lines_tcsh.py} +90 -109
  87. niwrap_afni/afni/firdesign.py +33 -51
  88. niwrap_afni/afni/float_scan.py +27 -48
  89. niwrap_afni/afni/from3d.py +42 -60
  90. niwrap_afni/afni/fsread_annot.py +52 -66
  91. niwrap_afni/afni/gen_epi_review_py.py +47 -61
  92. niwrap_afni/afni/{gen_group_command.py → gen_group_command_py.py} +82 -95
  93. niwrap_afni/afni/{gen_ss_review_scripts.py → gen_ss_review_scripts_py.py} +100 -106
  94. niwrap_afni/afni/gen_ss_review_table_py.py +55 -66
  95. niwrap_afni/afni/get_afni_model_prf.py +26 -46
  96. niwrap_afni/afni/get_afni_model_prf_6.py +32 -49
  97. niwrap_afni/afni/get_afni_model_prf_6_bad.py +30 -48
  98. niwrap_afni/afni/gifti_tool.py +77 -80
  99. niwrap_afni/afni/gltsymtest.py +28 -49
  100. niwrap_afni/afni/help_format.py +20 -44
  101. niwrap_afni/afni/im2niml.py +24 -48
  102. niwrap_afni/afni/images_equal.py +24 -46
  103. niwrap_afni/afni/imand.py +30 -52
  104. niwrap_afni/afni/imaver.py +32 -54
  105. niwrap_afni/afni/imcalc.py +30 -51
  106. niwrap_afni/afni/imcat.py +89 -87
  107. niwrap_afni/afni/imcutup.py +35 -55
  108. niwrap_afni/afni/imdump.py +20 -44
  109. niwrap_afni/afni/immask.py +35 -53
  110. niwrap_afni/afni/imreg.py +70 -75
  111. niwrap_afni/afni/imrotate.py +33 -51
  112. niwrap_afni/afni/imstack.py +28 -50
  113. niwrap_afni/afni/imstat.py +29 -50
  114. niwrap_afni/afni/imupsam.py +27 -48
  115. niwrap_afni/afni/init_user_dotfiles_py.py +59 -66
  116. niwrap_afni/afni/inspec.py +37 -54
  117. niwrap_afni/afni/iso_surface.py +56 -67
  118. niwrap_afni/afni/make_color_map.py +77 -82
  119. niwrap_afni/afni/make_pq_script_py.py +27 -48
  120. niwrap_afni/afni/make_random_timing_py.py +85 -88
  121. niwrap_afni/afni/make_stim_times_py.py +49 -62
  122. niwrap_afni/afni/map_icosahedron.py +51 -62
  123. niwrap_afni/afni/map_track_id.py +35 -52
  124. niwrap_afni/afni/mba.py +62 -72
  125. niwrap_afni/afni/meica_py.py +38 -55
  126. niwrap_afni/afni/myget.py +26 -48
  127. niwrap_afni/afni/neuro_deconvolve_py.py +51 -66
  128. niwrap_afni/afni/nicat.py +27 -47
  129. niwrap_afni/afni/niccc.py +50 -63
  130. niwrap_afni/afni/nifti_tool.py +52 -65
  131. niwrap_afni/afni/niml_feedme.py +36 -53
  132. niwrap_afni/afni/nsize.py +23 -46
  133. niwrap_afni/afni/p2dsetstat.py +34 -51
  134. niwrap_afni/afni/parse_fs_lt_log_py.py +29 -48
  135. niwrap_afni/afni/plugout_drive.py +56 -65
  136. niwrap_afni/afni/plugout_ijk.py +46 -59
  137. niwrap_afni/afni/plugout_tt.py +48 -60
  138. niwrap_afni/afni/plugout_tta.py +49 -63
  139. niwrap_afni/afni/prompt_popup.py +35 -53
  140. niwrap_afni/afni/prompt_user.py +26 -47
  141. niwrap_afni/afni/pta.py +44 -61
  142. niwrap_afni/afni/qdelaunay.py +100 -91
  143. niwrap_afni/afni/qhull.py +63 -67
  144. niwrap_afni/afni/quick_alpha_vals_py.py +23 -46
  145. niwrap_afni/afni/quickspec.py +41 -59
  146. niwrap_afni/afni/quickspec_sl.py +46 -63
  147. niwrap_afni/afni/quotize.py +25 -47
  148. niwrap_afni/afni/r_pkgs_install.py +30 -50
  149. niwrap_afni/afni/rba.py +93 -92
  150. niwrap_afni/afni/rbox.py +68 -71
  151. niwrap_afni/afni/read_matlab_files_py.py +32 -51
  152. niwrap_afni/afni/{realtime_receiver.py → realtime_receiver_py.py} +76 -88
  153. niwrap_afni/afni/retro_ts_py.py +84 -84
  154. niwrap_afni/afni/rmz.py +27 -47
  155. niwrap_afni/afni/roi2dataset.py +47 -60
  156. niwrap_afni/afni/roigrow.py +38 -55
  157. niwrap_afni/afni/rotcom.py +27 -50
  158. niwrap_afni/afni/rsfgen.py +53 -65
  159. niwrap_afni/afni/rtfeedme.py +47 -60
  160. niwrap_afni/afni/samp_bias.py +42 -60
  161. niwrap_afni/afni/scale_to_map.py +98 -90
  162. niwrap_afni/afni/serial_helper.py +48 -60
  163. niwrap_afni/afni/sfim.py +31 -54
  164. niwrap_afni/afni/slow_surf_clustsim_py.py +44 -57
  165. niwrap_afni/afni/spharm_deco.py +47 -68
  166. niwrap_afni/afni/spharm_reco.py +38 -54
  167. niwrap_afni/afni/stimband.py +34 -53
  168. niwrap_afni/afni/strblast.py +38 -55
  169. niwrap_afni/afni/suma_change_spec.py +34 -53
  170. niwrap_afni/afni/suma_glxdino.py +24 -47
  171. niwrap_afni/afni/surf2_vol_coord.py +46 -60
  172. niwrap_afni/afni/surf_clust.py +113 -99
  173. niwrap_afni/afni/surf_dist.py +37 -54
  174. niwrap_afni/afni/surf_dset_info.py +59 -64
  175. niwrap_afni/afni/surf_extrema.py +43 -60
  176. niwrap_afni/afni/surf_fwhm.py +59 -70
  177. niwrap_afni/afni/surf_info.py +67 -72
  178. niwrap_afni/afni/surf_layers.py +49 -70
  179. niwrap_afni/afni/surf_localstat.py +33 -52
  180. niwrap_afni/afni/surf_measures.py +64 -71
  181. niwrap_afni/afni/surf_mesh.py +37 -54
  182. niwrap_afni/afni/surf_patch.py +68 -72
  183. niwrap_afni/afni/surf_qual.py +38 -57
  184. niwrap_afni/afni/surf_retino_map.py +32 -52
  185. niwrap_afni/afni/surf_smooth.py +63 -72
  186. niwrap_afni/afni/surf_to_surf.py +55 -67
  187. niwrap_afni/afni/surface_metrics.py +68 -69
  188. niwrap_afni/afni/tedana_wrapper_py.py +51 -63
  189. niwrap_afni/afni/tfim.py +39 -57
  190. niwrap_afni/afni/timing_tool_py.py +72 -78
  191. niwrap_afni/afni/to3d.py +125 -110
  192. niwrap_afni/afni/tokens.py +24 -46
  193. niwrap_afni/afni/trr.py +70 -77
  194. niwrap_afni/afni/uber_align_test_py.py +41 -55
  195. niwrap_afni/afni/uber_proc_py.py +21 -44
  196. niwrap_afni/afni/{uber_skel.py → uber_skel_py.py} +72 -85
  197. niwrap_afni/afni/uber_subject_py.py +143 -124
  198. niwrap_afni/afni/un_warp_epi_py.py +34 -50
  199. niwrap_afni/afni/uniq_images.py +26 -50
  200. niwrap_afni/afni/v_1d_apar2mat.py +42 -54
  201. niwrap_afni/afni/v_1d_astrip.py +20 -44
  202. niwrap_afni/afni/v_1d_bandpass.py +34 -51
  203. niwrap_afni/afni/v_1d_bport.py +47 -60
  204. niwrap_afni/afni/v_1d_correlate.py +42 -57
  205. niwrap_afni/afni/v_1d_dw_grad_o_mat__.py +72 -76
  206. niwrap_afni/afni/v_1d_flag_motion.py +30 -52
  207. niwrap_afni/afni/v_1d_marry.py +25 -47
  208. niwrap_afni/afni/v_1d_nlfit.py +29 -49
  209. niwrap_afni/afni/v_1d_rplot.py +72 -78
  210. niwrap_afni/afni/v_1d_sem.py +60 -69
  211. niwrap_afni/afni/v_1d_tool_py.py +53 -65
  212. niwrap_afni/afni/v_1d_tsort.py +31 -49
  213. niwrap_afni/afni/v_1d_upsample.py +24 -46
  214. niwrap_afni/afni/v_1dcat.py +38 -54
  215. niwrap_afni/afni/v_1ddot.py +34 -51
  216. niwrap_afni/afni/v_1deval.py +44 -61
  217. niwrap_afni/afni/v_1dfft.py +40 -56
  218. niwrap_afni/afni/v_1dgen_arma11.py +57 -70
  219. niwrap_afni/afni/v_1dgrayplot.py +38 -53
  220. niwrap_afni/afni/v_1dmatcalc.py +25 -49
  221. niwrap_afni/afni/v_1dnorm.py +31 -50
  222. niwrap_afni/afni/v_1dplot.py +191 -155
  223. niwrap_afni/afni/v_1dplot_py.py +110 -103
  224. niwrap_afni/afni/v_1dsound.py +44 -58
  225. niwrap_afni/afni/v_1dsum.py +36 -53
  226. niwrap_afni/afni/v_1dsvd.py +45 -59
  227. niwrap_afni/afni/v_1dtranspose.py +24 -47
  228. niwrap_afni/afni/v_24swap.py +25 -46
  229. niwrap_afni/afni/v_2d_im_reg.py +55 -68
  230. niwrap_afni/afni/v_2dcat.py +86 -86
  231. niwrap_afni/afni/v_2perm.py +35 -54
  232. niwrap_afni/afni/v_2swap.py +22 -44
  233. niwrap_afni/afni/v_3d_aboverlap.py +32 -51
  234. niwrap_afni/afni/v_3d_acost.py +28 -49
  235. niwrap_afni/afni/v_3d_afnito3_d.py +28 -49
  236. niwrap_afni/afni/v_3d_afnito_analyze.py +31 -52
  237. niwrap_afni/afni/v_3d_afnito_nifti.py +36 -53
  238. niwrap_afni/afni/v_3d_afnito_niml.py +27 -47
  239. niwrap_afni/afni/v_3d_afnito_raw.py +25 -46
  240. niwrap_afni/afni/v_3d_allineate.py +63 -74
  241. niwrap_afni/afni/v_3d_amp_to_rsfc.py +39 -58
  242. niwrap_afni/afni/v_3d_anhist.py +41 -56
  243. niwrap_afni/afni/v_3d_anova.py +64 -75
  244. niwrap_afni/afni/v_3d_anova2.py +101 -100
  245. niwrap_afni/afni/v_3d_anova3.py +138 -126
  246. niwrap_afni/afni/v_3d_attribute.py +40 -55
  247. niwrap_afni/afni/v_3d_auto_tcorrelate.py +52 -64
  248. niwrap_afni/afni/v_3d_autobox.py +56 -66
  249. niwrap_afni/afni/v_3d_automask.py +40 -58
  250. niwrap_afni/afni/v_3d_ball_match.py +38 -56
  251. niwrap_afni/afni/v_3d_bandpass.py +66 -74
  252. niwrap_afni/afni/v_3d_blur_in_mask.py +45 -59
  253. niwrap_afni/afni/v_3d_blur_to_fwhm.py +41 -58
  254. niwrap_afni/afni/v_3d_brain_sync.py +40 -58
  255. niwrap_afni/afni/v_3d_brain_voyagerto_afni.py +52 -63
  256. niwrap_afni/afni/v_3d_brick_stat.py +83 -78
  257. niwrap_afni/afni/v_3d_clip_level.py +32 -52
  258. niwrap_afni/afni/v_3d_clust_count.py +30 -51
  259. niwrap_afni/afni/v_3d_clust_sim.py +85 -88
  260. niwrap_afni/afni/v_3d_clusterize.py +81 -82
  261. niwrap_afni/afni/v_3d_cm.py +43 -59
  262. niwrap_afni/afni/v_3d_compare_affine.py +31 -53
  263. niwrap_afni/afni/v_3d_conformist.py +24 -46
  264. niwrap_afni/afni/v_3d_convolve.py +26 -48
  265. niwrap_afni/afni/v_3d_cruiseto_afni.py +48 -60
  266. niwrap_afni/afni/v_3d_deconvolve.py +68 -78
  267. niwrap_afni/afni/v_3d_degree_centrality.py +49 -66
  268. niwrap_afni/afni/v_3d_depth_map.py +53 -65
  269. niwrap_afni/afni/v_3d_despike.py +28 -51
  270. niwrap_afni/afni/v_3d_detrend.py +24 -47
  271. niwrap_afni/afni/v_3d_dft.py +40 -58
  272. niwrap_afni/afni/v_3d_diff.py +37 -54
  273. niwrap_afni/afni/v_3d_dteig.py +35 -55
  274. niwrap_afni/afni/v_3d_dtto_dwi.py +37 -54
  275. niwrap_afni/afni/v_3d_dtto_noisy_dwi.py +45 -60
  276. niwrap_afni/afni/v_3d_dwito_dt.py +84 -86
  277. niwrap_afni/afni/v_3d_dwuncert.py +43 -59
  278. niwrap_afni/afni/v_3d_ecm.py +65 -73
  279. niwrap_afni/afni/v_3d_edu_01_scale.py +28 -53
  280. niwrap_afni/afni/v_3d_eigs_to_dt.py +38 -55
  281. niwrap_afni/afni/v_3d_empty.py +31 -52
  282. niwrap_afni/afni/v_3d_entropy.py +22 -44
  283. niwrap_afni/afni/v_3d_errts_cormat.py +39 -58
  284. niwrap_afni/afni/v_3d_exchange.py +30 -50
  285. niwrap_afni/afni/v_3d_extract_group_in_corr.py +28 -51
  286. niwrap_afni/afni/v_3d_extrema.py +67 -72
  287. niwrap_afni/afni/v_3d_fdr.py +54 -65
  288. niwrap_afni/afni/v_3d_fft.py +52 -65
  289. niwrap_afni/afni/v_3d_friedman.py +30 -53
  290. niwrap_afni/afni/v_3d_fwhmx.py +51 -63
  291. niwrap_afni/afni/v_3d_gen_feature_dist.py +50 -63
  292. niwrap_afni/afni/v_3d_gen_priors.py +87 -86
  293. niwrap_afni/afni/v_3d_getrow.py +34 -54
  294. niwrap_afni/afni/v_3d_grayplot.py +58 -69
  295. niwrap_afni/afni/v_3d_group_in_corr.py +87 -84
  296. niwrap_afni/afni/v_3d_hist.py +74 -78
  297. niwrap_afni/afni/v_3d_icc.py +55 -66
  298. niwrap_afni/afni/v_3d_intracranial.py +41 -57
  299. niwrap_afni/afni/v_3d_inv_fmri.py +48 -62
  300. niwrap_afni/afni/v_3d_isc.py +43 -59
  301. niwrap_afni/afni/v_3d_kruskal_wallis.py +31 -51
  302. niwrap_afni/afni/v_3d_lfcd.py +47 -63
  303. niwrap_afni/afni/v_3d_lme.py +97 -92
  304. niwrap_afni/afni/v_3d_lmer.py +77 -80
  305. niwrap_afni/afni/v_3d_local_acf.py +35 -55
  306. niwrap_afni/afni/v_3d_local_bistat.py +50 -63
  307. niwrap_afni/afni/v_3d_local_histog.py +46 -61
  308. niwrap_afni/afni/v_3d_local_pv.py +50 -64
  309. niwrap_afni/afni/v_3d_local_svd.py +38 -54
  310. niwrap_afni/afni/v_3d_local_unifize.py +46 -62
  311. niwrap_afni/afni/v_3d_localstat.py +76 -81
  312. niwrap_afni/afni/v_3d_lomb_scargle.py +42 -59
  313. niwrap_afni/afni/v_3d_lrflip.py +35 -55
  314. niwrap_afni/afni/v_3d_lss.py +39 -56
  315. niwrap_afni/afni/v_3d_mann_whitney.py +30 -54
  316. niwrap_afni/afni/v_3d_mask_to_ascii.py +25 -47
  317. niwrap_afni/afni/v_3d_match.py +49 -65
  318. niwrap_afni/afni/v_3d_mean.py +64 -70
  319. niwrap_afni/afni/v_3d_median_filter.py +39 -58
  320. niwrap_afni/afni/v_3d_mema.py +89 -87
  321. niwrap_afni/afni/v_3d_mepfm.py +43 -63
  322. niwrap_afni/afni/v_3d_mse.py +44 -60
  323. niwrap_afni/afni/v_3d_mss.py +66 -73
  324. niwrap_afni/afni/v_3d_multi_thresh.py +47 -61
  325. niwrap_afni/afni/v_3d_mvm.py +62 -72
  326. niwrap_afni/afni/v_3d_mvm_validator.py +23 -49
  327. niwrap_afni/afni/v_3d_net_corr.py +67 -72
  328. niwrap_afni/afni/v_3d_nlfim.py +134 -122
  329. niwrap_afni/afni/v_3d_normality_test.py +27 -48
  330. niwrap_afni/afni/v_3d_notes.py +36 -53
  331. niwrap_afni/afni/v_3d_nwarp_adjust.py +34 -56
  332. niwrap_afni/afni/v_3d_nwarp_apply.py +59 -73
  333. niwrap_afni/afni/v_3d_nwarp_cat.py +42 -58
  334. niwrap_afni/afni/v_3d_nwarp_funcs.py +35 -54
  335. niwrap_afni/afni/v_3d_nwarp_xyz.py +31 -52
  336. niwrap_afni/afni/v_3d_overlap.py +27 -49
  337. niwrap_afni/afni/{v_3d_par2_afni.py → v_3d_par2_afni_pl.py} +65 -80
  338. niwrap_afni/afni/v_3d_periodogram.py +35 -56
  339. niwrap_afni/afni/v_3d_pfm.py +62 -72
  340. niwrap_afni/afni/v_3d_polyfit.py +62 -73
  341. niwrap_afni/afni/v_3d_pval.py +32 -51
  342. niwrap_afni/afni/v_3d_pvmap.py +31 -52
  343. niwrap_afni/afni/v_3d_qwarp.py +64 -67
  344. niwrap_afni/afni/v_3d_rank.py +30 -51
  345. niwrap_afni/afni/v_3d_rankizer.py +37 -56
  346. niwrap_afni/afni/v_3d_re_ho.py +65 -76
  347. niwrap_afni/afni/v_3d_reg_ana.py +58 -68
  348. niwrap_afni/afni/v_3d_remlfit.py +64 -74
  349. niwrap_afni/afni/v_3d_retino_phase.py +71 -80
  350. niwrap_afni/afni/{v_3_droimaker.py → v_3d_roimaker.py} +100 -105
  351. niwrap_afni/afni/v_3d_roistats.py +52 -62
  352. niwrap_afni/afni/v_3d_row_fillin.py +33 -53
  353. niwrap_afni/afni/v_3d_rprog_demo.py +43 -57
  354. niwrap_afni/afni/v_3d_rsfc.py +78 -79
  355. niwrap_afni/afni/v_3d_seg.py +80 -86
  356. niwrap_afni/afni/v_3d_setup_group_in_corr.py +46 -60
  357. niwrap_afni/afni/v_3d_sharpen.py +30 -52
  358. niwrap_afni/afni/v_3d_signatures.py +33 -52
  359. niwrap_afni/afni/v_3d_skull_strip.py +27 -49
  360. niwrap_afni/afni/v_3d_slice_ndice.py +36 -54
  361. niwrap_afni/afni/v_3d_space_time_corr.py +36 -54
  362. niwrap_afni/afni/v_3d_spat_norm.py +40 -56
  363. niwrap_afni/afni/v_3d_stat_clust.py +44 -60
  364. niwrap_afni/afni/v_3d_surf2_vol.py +84 -87
  365. niwrap_afni/afni/v_3d_surf_mask.py +44 -60
  366. niwrap_afni/afni/v_3d_synthesize.py +34 -51
  367. niwrap_afni/afni/v_3d_tagalign.py +54 -64
  368. niwrap_afni/afni/v_3d_tcat.py +34 -53
  369. niwrap_afni/afni/v_3d_tcorr1_d.py +40 -57
  370. niwrap_afni/afni/v_3d_tcorr_map.py +66 -73
  371. niwrap_afni/afni/v_3d_tcorrelate.py +59 -68
  372. niwrap_afni/afni/v_3d_tfilter.py +29 -51
  373. niwrap_afni/afni/v_3d_tfitter.py +71 -78
  374. niwrap_afni/afni/v_3d_threeto_rgb.py +41 -58
  375. niwrap_afni/afni/v_3d_tnorm.py +37 -54
  376. niwrap_afni/afni/v_3d_tortoiseto_here.py +36 -55
  377. niwrap_afni/afni/v_3d_toutcount.py +44 -59
  378. niwrap_afni/afni/v_3d_toy_prog.py +54 -62
  379. niwrap_afni/afni/v_3d_tproject.py +77 -83
  380. niwrap_afni/afni/v_3d_tqual.py +36 -53
  381. niwrap_afni/afni/v_3d_track_id.py +139 -120
  382. niwrap_afni/afni/v_3d_trfix.py +33 -53
  383. niwrap_afni/afni/v_3d_tsgen.py +55 -66
  384. niwrap_afni/afni/v_3d_tshift.py +59 -71
  385. niwrap_afni/afni/v_3d_tsmooth.py +58 -69
  386. niwrap_afni/afni/v_3d_tsort.py +43 -57
  387. niwrap_afni/afni/v_3d_tsplit4_d.py +27 -51
  388. niwrap_afni/afni/v_3d_tstat.py +151 -115
  389. niwrap_afni/afni/v_3d_tto1_d.py +34 -53
  390. niwrap_afni/afni/v_3d_twoto_complex.py +35 -54
  391. niwrap_afni/afni/v_3d_undump.py +65 -72
  392. niwrap_afni/afni/v_3d_unifize.py +56 -67
  393. niwrap_afni/afni/v_3d_upsample.py +34 -53
  394. niwrap_afni/afni/v_3d_vec_rgb_to_hsl.py +33 -54
  395. niwrap_afni/afni/v_3d_vol2_surf.py +125 -108
  396. niwrap_afni/afni/v_3d_warp.py +73 -75
  397. niwrap_afni/afni/v_3d_warp_drive.py +108 -95
  398. niwrap_afni/afni/v_3d_wilcoxon.py +35 -53
  399. niwrap_afni/afni/v_3d_winsor.py +45 -61
  400. niwrap_afni/afni/v_3d_xclust_sim.py +64 -74
  401. niwrap_afni/afni/v_3d_xyzcat.py +30 -51
  402. niwrap_afni/afni/v_3d_zcat.py +36 -54
  403. niwrap_afni/afni/v_3d_zcutup.py +27 -49
  404. niwrap_afni/afni/v_3d_zeropad.py +62 -72
  405. niwrap_afni/afni/v_3d_zipper_zapper.py +63 -72
  406. niwrap_afni/afni/v_3d_zregrid.py +36 -55
  407. niwrap_afni/afni/v_3danisosmooth.py +72 -75
  408. niwrap_afni/afni/v_3daxialize.py +41 -56
  409. niwrap_afni/afni/v_3dbucket.py +43 -57
  410. niwrap_afni/afni/v_3dcalc.py +46 -61
  411. niwrap_afni/afni/v_3dclust.py +64 -69
  412. niwrap_afni/afni/v_3dcopy.py +32 -49
  413. niwrap_afni/afni/v_3ddelay.py +83 -84
  414. niwrap_afni/afni/v_3ddot.py +50 -60
  415. niwrap_afni/afni/v_3ddot_beta.py +28 -49
  416. niwrap_afni/afni/v_3dedge3.py +40 -56
  417. niwrap_afni/afni/v_3dedgedog.py +59 -72
  418. niwrap_afni/afni/v_3dfim_.py +60 -73
  419. niwrap_afni/afni/v_3dfractionize.py +36 -54
  420. niwrap_afni/afni/v_3dhistog.py +63 -70
  421. niwrap_afni/afni/v_3dinfill.py +48 -63
  422. niwrap_afni/afni/v_3dinfo.py +250 -161
  423. niwrap_afni/afni/v_3dkmeans.py +73 -79
  424. niwrap_afni/afni/v_3dmask_svd.py +46 -62
  425. niwrap_afni/afni/v_3dmask_tool.py +53 -65
  426. niwrap_afni/afni/v_3dmaskave.py +36 -56
  427. niwrap_afni/afni/v_3dmaskdump.py +73 -78
  428. niwrap_afni/afni/v_3dmatcalc.py +29 -50
  429. niwrap_afni/afni/v_3dmatmult.py +31 -51
  430. niwrap_afni/afni/v_3dmaxdisp.py +30 -50
  431. niwrap_afni/afni/v_3dmaxima.py +68 -70
  432. niwrap_afni/afni/v_3dmerge.py +48 -61
  433. niwrap_afni/afni/v_3dnewid.py +37 -53
  434. niwrap_afni/afni/v_3dnvals.py +24 -45
  435. niwrap_afni/afni/v_3dpc.py +58 -68
  436. niwrap_afni/afni/v_3drefit.py +65 -73
  437. niwrap_afni/afni/v_3drename.py +22 -44
  438. niwrap_afni/afni/v_3dresample.py +38 -56
  439. niwrap_afni/afni/v_3dretroicor.py +51 -67
  440. niwrap_afni/afni/v_3drotate.py +83 -83
  441. niwrap_afni/afni/v_3dsvm.py +90 -88
  442. niwrap_afni/afni/v_3dsvm_linpredict.py +25 -47
  443. niwrap_afni/afni/v_3dto_xdataset.py +25 -47
  444. niwrap_afni/afni/v_3dttest__.py +77 -81
  445. niwrap_afni/afni/v_3dvolreg.py +60 -70
  446. niwrap_afni/afni/v_4swap.py +22 -44
  447. niwrap_afni/afni/v__1d_diff_mag.py +20 -44
  448. niwrap_afni/afni/v__2dwarper.py +20 -44
  449. niwrap_afni/afni/v__2dwarper_allin.py +28 -50
  450. niwrap_afni/afni/v__4_daverage.py +22 -44
  451. niwrap_afni/afni/v__add_edge.py +59 -69
  452. niwrap_afni/afni/v__afni_env.py +42 -56
  453. niwrap_afni/afni/v__afni_orient2_raimap.py +20 -43
  454. niwrap_afni/afni/v__afni_orient_sign.py +21 -45
  455. niwrap_afni/afni/v__afni_r_package_install.py +34 -52
  456. niwrap_afni/afni/v__afni_refacer_make_master.py +20 -44
  457. niwrap_afni/afni/v__afni_refacer_make_onebig_a12.py +21 -45
  458. niwrap_afni/afni/v__afni_refacer_run.py +55 -67
  459. niwrap_afni/afni/v__afni_run_me.py +24 -45
  460. niwrap_afni/afni/v__align_centers.py +57 -68
  461. niwrap_afni/afni/v__align_partial_oblique.py +42 -58
  462. niwrap_afni/afni/v__anaticor.py +50 -61
  463. niwrap_afni/afni/v__animal_warper.py +113 -104
  464. niwrap_afni/afni/v__atlasize.py +67 -74
  465. niwrap_afni/afni/v__auto_tlrc.py +119 -105
  466. niwrap_afni/afni/v__build_afni_xlib.py +30 -48
  467. niwrap_afni/afni/v__center_distance.py +22 -45
  468. niwrap_afni/afni/v__chauffeur_afni.py +68 -75
  469. niwrap_afni/afni/v__check_for_afni_dset.py +21 -45
  470. niwrap_afni/afni/v__clip_volume.py +71 -78
  471. niwrap_afni/afni/v__clust_exp_cat_lab.py +25 -47
  472. niwrap_afni/afni/v__clust_exp_run_shiny.py +22 -44
  473. niwrap_afni/afni/v__command_globb.py +27 -51
  474. niwrap_afni/afni/v__compute_gcor.py +38 -56
  475. niwrap_afni/afni/v__compute_oc_weights.py +47 -62
  476. niwrap_afni/afni/v__deblank_file_names.py +35 -51
  477. niwrap_afni/afni/v__demo_prompt.py +20 -44
  478. niwrap_afni/afni/v__dice_metric.py +48 -59
  479. niwrap_afni/afni/v__diff_files.py +47 -58
  480. niwrap_afni/afni/v__diff_tree.py +61 -67
  481. niwrap_afni/afni/v__djunct_4d_imager.py +37 -58
  482. niwrap_afni/afni/v__djunct_4d_slices_to_3d_vol.py +20 -44
  483. niwrap_afni/afni/v__djunct_anonymize.py +28 -48
  484. niwrap_afni/afni/v__djunct_dwi_selector_tcsh.py +170 -0
  485. niwrap_afni/afni/v__djunct_edgy_align_check.py +88 -86
  486. niwrap_afni/afni/v__djunct_modal_smoothing_with_rep.py +43 -60
  487. niwrap_afni/afni/v__djunct_montage_coordinator.py +36 -54
  488. niwrap_afni/afni/v__djunct_overlap_check.py +80 -80
  489. niwrap_afni/afni/v__djunct_ssw_intermed_edge_imgs.py +54 -63
  490. niwrap_afni/afni/v__do_examples.py +20 -44
  491. niwrap_afni/afni/v__electro_grid.py +35 -54
  492. niwrap_afni/afni/v__examine_gen_feat_dists.py +42 -57
  493. niwrap_afni/afni/v__extract_meica_ortvec.py +36 -55
  494. niwrap_afni/afni/v__fast_roi.py +41 -56
  495. niwrap_afni/afni/v__fat_tract_colorize.py +37 -55
  496. niwrap_afni/afni/v__find_afni_dset_path.py +30 -48
  497. niwrap_afni/afni/v__fix_fssphere.py +32 -51
  498. niwrap_afni/afni/v__float_fix.py +24 -47
  499. niwrap_afni/afni/v__from_rai.py +22 -44
  500. niwrap_afni/afni/v__fs_roi_label.py +45 -60
  501. niwrap_afni/afni/v__fslabel2dset.py +33 -52
  502. niwrap_afni/afni/v__get_afni_dims.py +20 -44
  503. niwrap_afni/afni/v__get_afni_id.py +20 -44
  504. niwrap_afni/afni/v__get_afni_orient.py +23 -46
  505. niwrap_afni/afni/v__get_afni_prefix.py +23 -45
  506. niwrap_afni/afni/v__get_afni_res.py +23 -45
  507. niwrap_afni/afni/v__get_afni_version.py +21 -45
  508. niwrap_afni/afni/v__get_afni_view.py +20 -44
  509. niwrap_afni/afni/v__grad_flip_test.py +58 -69
  510. niwrap_afni/afni/v__grayplot.py +33 -53
  511. niwrap_afni/afni/v__help_afni.py +31 -49
  512. niwrap_afni/afni/v__is_oblique.py +20 -44
  513. niwrap_afni/afni/v__iso_masks.py +23 -45
  514. niwrap_afni/afni/v__make_label_table.py +116 -106
  515. niwrap_afni/afni/v__make_plug_diff.py +32 -49
  516. niwrap_afni/afni/v__measure_bb_thick.py +59 -72
  517. niwrap_afni/afni/v__measure_erosion_thick.py +45 -60
  518. niwrap_afni/afni/v__measure_in2out.py +50 -63
  519. niwrap_afni/afni/v__move_to_series_dirs.py +41 -57
  520. niwrap_afni/afni/v__no_ext.py +23 -46
  521. niwrap_afni/afni/v__no_pound.py +20 -43
  522. niwrap_afni/afni/v__noisy_skull_strip.py +29 -51
  523. niwrap_afni/afni/v__np.py +28 -50
  524. niwrap_afni/afni/v__parse_afni_name.py +24 -48
  525. niwrap_afni/afni/v__purify_1_d.py +26 -47
  526. niwrap_afni/afni/v__quiet_talkers.py +38 -54
  527. niwrap_afni/afni/v__radial_correlate.py +74 -79
  528. niwrap_afni/afni/v__rename_panga.py +43 -58
  529. niwrap_afni/afni/v__reorder.py +38 -56
  530. niwrap_afni/afni/v__retino_proc.py +130 -114
  531. niwrap_afni/afni/v__roi_corr_mat.py +42 -57
  532. niwrap_afni/afni/v__roi_decluster.py +40 -57
  533. niwrap_afni/afni/v__roi_modal_grow.py +39 -56
  534. niwrap_afni/afni/v__scale_volume.py +38 -55
  535. niwrap_afni/afni/v__script_check.py +25 -47
  536. niwrap_afni/afni/v__shift_volume.py +36 -55
  537. niwrap_afni/afni/v__show_dynamic_range.py +26 -50
  538. niwrap_afni/afni/v__simulate_motion.py +58 -67
  539. niwrap_afni/afni/v__skull_strip_touch_up.py +36 -55
  540. niwrap_afni/afni/v__snapshot_volreg.py +29 -50
  541. niwrap_afni/afni/v__spharm_examples.py +31 -49
  542. niwrap_afni/afni/v__sswarper.py +89 -89
  543. niwrap_afni/afni/v__statauxcode.py +20 -44
  544. niwrap_afni/afni/v__suma_acknowledge.py +40 -58
  545. niwrap_afni/afni/v__suma_align_to_experiment.py +75 -78
  546. niwrap_afni/afni/v__suma_fsvol_to_brik.py +24 -47
  547. niwrap_afni/afni/v__suma_make_spec_caret.py +35 -54
  548. niwrap_afni/afni/v__suma_make_spec_fs.py +60 -69
  549. niwrap_afni/afni/v__suma_make_spec_sf.py +28 -50
  550. niwrap_afni/afni/v__suma_renumber_fs.py +29 -53
  551. niwrap_afni/afni/v__suma_reprefixize_spec.py +28 -51
  552. niwrap_afni/afni/v__surf_smooth_heat_07_examples.py +20 -43
  553. niwrap_afni/afni/v__surf_to_vol_spackle.py +57 -68
  554. niwrap_afni/afni/v__t1scale.py +50 -61
  555. niwrap_afni/afni/v__thickness_master.py +28 -50
  556. niwrap_afni/afni/v__time_diff.py +22 -44
  557. niwrap_afni/afni/v__to_mni_awarp.py +22 -48
  558. niwrap_afni/afni/v__to_mni_qwarpar.py +23 -46
  559. niwrap_afni/afni/v__to_rai.py +22 -44
  560. niwrap_afni/afni/v__update_afni_binaries.py +73 -73
  561. niwrap_afni/afni/v__vol_center.py +23 -45
  562. niwrap_afni/afni/v__xyz_to_ijk.py +30 -50
  563. niwrap_afni/afni/vecwarp.py +41 -59
  564. niwrap_afni/afni/waver.py +80 -83
  565. niwrap_afni/afni/whirlgif.py +42 -60
  566. niwrap_afni/afni/xmat_tool_py.py +66 -70
  567. niwrap_afni-0.7.0.dist-info/METADATA +8 -0
  568. niwrap_afni-0.7.0.dist-info/RECORD +569 -0
  569. niwrap_afni-0.7.0.dist-info/WHEEL +4 -0
  570. niwrap_afni/afni/v__djunct_dwi_selector.py +0 -192
  571. niwrap_afni-0.6.2.dist-info/METADATA +0 -8
  572. niwrap_afni-0.6.2.dist-info/RECORD +0 -569
  573. niwrap_afni-0.6.2.dist-info/WHEEL +0 -4
@@ -6,7 +6,7 @@ import pathlib
6
6
  from styxdefs import *
7
7
 
8
8
  PLUGOUT_TTA_METADATA = Metadata(
9
- id="26a67b6d99edd0b87b407eb196b2417061d34e4e.boutiques",
9
+ id="551fdf08760f91c16dd733cdd6396c9b13d3ec36.boutiques",
10
10
  name="plugout_tta",
11
11
  package="afni",
12
12
  container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,20 @@ PLUGOUT_TTA_METADATA = Metadata(
14
14
 
15
15
 
16
16
  PlugoutTtaParameters = typing.TypedDict('PlugoutTtaParameters', {
17
- "__STYXTYPE__": typing.Literal["plugout_tta"],
17
+ "@type": typing.NotRequired[typing.Literal["afni/plugout_tta"]],
18
+ "host": typing.NotRequired[str | None],
19
+ "port": typing.NotRequired[int | None],
20
+ "verbose": bool,
21
+ "port_offset": typing.NotRequired[int | None],
22
+ "port_offset_quiet": typing.NotRequired[int | None],
23
+ "port_offset_bloc": typing.NotRequired[int | None],
24
+ "max_port_bloc": bool,
25
+ "max_port_bloc_quiet": bool,
26
+ "num_assigned_ports": bool,
27
+ "num_assigned_ports_quiet": bool,
28
+ })
29
+ PlugoutTtaParametersTagged = typing.TypedDict('PlugoutTtaParametersTagged', {
30
+ "@type": typing.Literal["afni/plugout_tta"],
18
31
  "host": typing.NotRequired[str | None],
19
32
  "port": typing.NotRequired[int | None],
20
33
  "verbose": bool,
@@ -26,42 +39,11 @@ PlugoutTtaParameters = typing.TypedDict('PlugoutTtaParameters', {
26
39
  "num_assigned_ports": bool,
27
40
  "num_assigned_ports_quiet": bool,
28
41
  })
29
-
30
-
31
- def dyn_cargs(
32
- t: str,
33
- ) -> typing.Any:
34
- """
35
- Get build cargs function by command type.
36
-
37
- Args:
38
- t: Command type.
39
- Returns:
40
- Build cargs function.
41
- """
42
- return {
43
- "plugout_tta": plugout_tta_cargs,
44
- }.get(t)
45
-
46
-
47
- def dyn_outputs(
48
- t: str,
49
- ) -> typing.Any:
50
- """
51
- Get build outputs function by command type.
52
-
53
- Args:
54
- t: Command type.
55
- Returns:
56
- Build outputs function.
57
- """
58
- return {
59
- }.get(t)
60
42
 
61
43
 
62
44
  class PlugoutTtaOutputs(typing.NamedTuple):
63
45
  """
64
- Output object returned when calling `plugout_tta(...)`.
46
+ Output object returned when calling `PlugoutTtaParameters(...)`.
65
47
  """
66
48
  root: OutputPathType
67
49
  """Output root folder. This is the root folder for all outputs."""
@@ -78,7 +60,7 @@ def plugout_tta_params(
78
60
  max_port_bloc_quiet: bool = False,
79
61
  num_assigned_ports: bool = False,
80
62
  num_assigned_ports_quiet: bool = False,
81
- ) -> PlugoutTtaParameters:
63
+ ) -> PlugoutTtaParametersTagged:
82
64
  """
83
65
  Build parameters.
84
66
 
@@ -103,7 +85,7 @@ def plugout_tta_params(
103
85
  Parameter dictionary
104
86
  """
105
87
  params = {
106
- "__STYXTYPE__": "plugout_tta",
88
+ "@type": "afni/plugout_tta",
107
89
  "verbose": verbose,
108
90
  "max_port_bloc": max_port_bloc,
109
91
  "max_port_bloc_quiet": max_port_bloc_quiet,
@@ -138,40 +120,40 @@ def plugout_tta_cargs(
138
120
  """
139
121
  cargs = []
140
122
  cargs.append("plugout_tta")
141
- if params.get("host") is not None:
123
+ if params.get("host", None) is not None:
142
124
  cargs.extend([
143
125
  "-host",
144
- params.get("host")
126
+ params.get("host", None)
145
127
  ])
146
- if params.get("port") is not None:
128
+ if params.get("port", None) is not None:
147
129
  cargs.extend([
148
130
  "-port",
149
- str(params.get("port"))
131
+ str(params.get("port", None))
150
132
  ])
151
- if params.get("verbose"):
133
+ if params.get("verbose", False):
152
134
  cargs.append("-v")
153
- if params.get("port_offset") is not None:
135
+ if params.get("port_offset", None) is not None:
154
136
  cargs.extend([
155
137
  "-np",
156
- str(params.get("port_offset"))
138
+ str(params.get("port_offset", None))
157
139
  ])
158
- if params.get("port_offset_quiet") is not None:
140
+ if params.get("port_offset_quiet", None) is not None:
159
141
  cargs.extend([
160
142
  "-npq",
161
- str(params.get("port_offset_quiet"))
143
+ str(params.get("port_offset_quiet", None))
162
144
  ])
163
- if params.get("port_offset_bloc") is not None:
145
+ if params.get("port_offset_bloc", None) is not None:
164
146
  cargs.extend([
165
147
  "-npb",
166
- str(params.get("port_offset_bloc"))
148
+ str(params.get("port_offset_bloc", None))
167
149
  ])
168
- if params.get("max_port_bloc"):
150
+ if params.get("max_port_bloc", False):
169
151
  cargs.append("-max_port_bloc")
170
- if params.get("max_port_bloc_quiet"):
152
+ if params.get("max_port_bloc_quiet", False):
171
153
  cargs.append("-max_port_bloc_quiet")
172
- if params.get("num_assigned_ports"):
154
+ if params.get("num_assigned_ports", False):
173
155
  cargs.append("-num_assigned_ports")
174
- if params.get("num_assigned_ports_quiet"):
156
+ if params.get("num_assigned_ports_quiet", False):
175
157
  cargs.append("-num_assigned_ports_quiet")
176
158
  return cargs
177
159
 
@@ -197,12 +179,14 @@ def plugout_tta_outputs(
197
179
 
198
180
  def plugout_tta_execute(
199
181
  params: PlugoutTtaParameters,
200
- execution: Execution,
182
+ runner: Runner | None = None,
201
183
  ) -> PlugoutTtaOutputs:
202
184
  """
203
- Connects to AFNI and receives notification whenever the user changes Talairach
204
- coordinates, then drives Netscape to display the closest figures from the
205
- Talairach-Tournoux atlas.
185
+ plugout_tta
186
+
187
+ Connects to AFNI and receives notification whenever the user changes
188
+ Talairach coordinates, then drives Netscape to display the closest figures
189
+ from the Talairach-Tournoux atlas.
206
190
 
207
191
  Author: AFNI Developers
208
192
 
@@ -210,10 +194,12 @@ def plugout_tta_execute(
210
194
 
211
195
  Args:
212
196
  params: The parameters.
213
- execution: The execution object.
197
+ runner: Command runner.
214
198
  Returns:
215
199
  NamedTuple of outputs (described in `PlugoutTtaOutputs`).
216
200
  """
201
+ runner = runner or get_global_runner()
202
+ execution = runner.start_execution(PLUGOUT_TTA_METADATA)
217
203
  params = execution.params(params)
218
204
  cargs = plugout_tta_cargs(params, execution)
219
205
  ret = plugout_tta_outputs(params, execution)
@@ -235,9 +221,11 @@ def plugout_tta(
235
221
  runner: Runner | None = None,
236
222
  ) -> PlugoutTtaOutputs:
237
223
  """
238
- Connects to AFNI and receives notification whenever the user changes Talairach
239
- coordinates, then drives Netscape to display the closest figures from the
240
- Talairach-Tournoux atlas.
224
+ plugout_tta
225
+
226
+ Connects to AFNI and receives notification whenever the user changes
227
+ Talairach coordinates, then drives Netscape to display the closest figures
228
+ from the Talairach-Tournoux atlas.
241
229
 
242
230
  Author: AFNI Developers
243
231
 
@@ -264,8 +252,6 @@ def plugout_tta(
264
252
  Returns:
265
253
  NamedTuple of outputs (described in `PlugoutTtaOutputs`).
266
254
  """
267
- runner = runner or get_global_runner()
268
- execution = runner.start_execution(PLUGOUT_TTA_METADATA)
269
255
  params = plugout_tta_params(
270
256
  host=host,
271
257
  port=port,
@@ -278,13 +264,13 @@ def plugout_tta(
278
264
  num_assigned_ports=num_assigned_ports,
279
265
  num_assigned_ports_quiet=num_assigned_ports_quiet,
280
266
  )
281
- return plugout_tta_execute(params, execution)
267
+ return plugout_tta_execute(params, runner)
282
268
 
283
269
 
284
270
  __all__ = [
285
271
  "PLUGOUT_TTA_METADATA",
286
272
  "PlugoutTtaOutputs",
287
- "PlugoutTtaParameters",
288
273
  "plugout_tta",
274
+ "plugout_tta_execute",
289
275
  "plugout_tta_params",
290
276
  ]
@@ -6,7 +6,7 @@ import pathlib
6
6
  from styxdefs import *
7
7
 
8
8
  PROMPT_POPUP_METADATA = Metadata(
9
- id="c24519073e7efb98045929a1a4d42a4a25f3e8ef.boutiques",
9
+ id="1754fed0e11b63758a193b0de9198e3fac8f88c3.boutiques",
10
10
  name="prompt_popup",
11
11
  package="afni",
12
12
  container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,16 @@ PROMPT_POPUP_METADATA = Metadata(
14
14
 
15
15
 
16
16
  PromptPopupParameters = typing.TypedDict('PromptPopupParameters', {
17
- "__STYXTYPE__": typing.Literal["prompt_popup"],
17
+ "@type": typing.NotRequired[typing.Literal["afni/prompt_popup"]],
18
+ "message": str,
19
+ "message_pause": typing.NotRequired[str | None],
20
+ "buttons": typing.NotRequired[list[str] | None],
21
+ "buttons_b": typing.NotRequired[list[str] | None],
22
+ "timeout": typing.NotRequired[float | None],
23
+ "timeout_to": typing.NotRequired[float | None],
24
+ })
25
+ PromptPopupParametersTagged = typing.TypedDict('PromptPopupParametersTagged', {
26
+ "@type": typing.Literal["afni/prompt_popup"],
18
27
  "message": str,
19
28
  "message_pause": typing.NotRequired[str | None],
20
29
  "buttons": typing.NotRequired[list[str] | None],
@@ -22,42 +31,11 @@ PromptPopupParameters = typing.TypedDict('PromptPopupParameters', {
22
31
  "timeout": typing.NotRequired[float | None],
23
32
  "timeout_to": typing.NotRequired[float | None],
24
33
  })
25
-
26
-
27
- def dyn_cargs(
28
- t: str,
29
- ) -> typing.Any:
30
- """
31
- Get build cargs function by command type.
32
-
33
- Args:
34
- t: Command type.
35
- Returns:
36
- Build cargs function.
37
- """
38
- return {
39
- "prompt_popup": prompt_popup_cargs,
40
- }.get(t)
41
-
42
-
43
- def dyn_outputs(
44
- t: str,
45
- ) -> typing.Any:
46
- """
47
- Get build outputs function by command type.
48
-
49
- Args:
50
- t: Command type.
51
- Returns:
52
- Build outputs function.
53
- """
54
- return {
55
- }.get(t)
56
34
 
57
35
 
58
36
  class PromptPopupOutputs(typing.NamedTuple):
59
37
  """
60
- Output object returned when calling `prompt_popup(...)`.
38
+ Output object returned when calling `PromptPopupParameters(...)`.
61
39
  """
62
40
  root: OutputPathType
63
41
  """Output root folder. This is the root folder for all outputs."""
@@ -70,7 +48,7 @@ def prompt_popup_params(
70
48
  buttons_b: list[str] | None = None,
71
49
  timeout: float | None = None,
72
50
  timeout_to: float | None = None,
73
- ) -> PromptPopupParameters:
51
+ ) -> PromptPopupParametersTagged:
74
52
  """
75
53
  Build parameters.
76
54
 
@@ -89,7 +67,7 @@ def prompt_popup_params(
89
67
  Parameter dictionary
90
68
  """
91
69
  params = {
92
- "__STYXTYPE__": "prompt_popup",
70
+ "@type": "afni/prompt_popup",
93
71
  "message": message,
94
72
  }
95
73
  if message_pause is not None:
@@ -122,32 +100,32 @@ def prompt_popup_cargs(
122
100
  cargs.append("prompt_popup")
123
101
  cargs.extend([
124
102
  "-message",
125
- params.get("message")
103
+ params.get("message", None)
126
104
  ])
127
- if params.get("message_pause") is not None:
105
+ if params.get("message_pause", None) is not None:
128
106
  cargs.extend([
129
107
  "-pause",
130
- params.get("message_pause")
108
+ params.get("message_pause", None)
131
109
  ])
132
- if params.get("buttons") is not None:
110
+ if params.get("buttons", None) is not None:
133
111
  cargs.extend([
134
112
  "-button",
135
- *params.get("buttons")
113
+ *params.get("buttons", None)
136
114
  ])
137
- if params.get("buttons_b") is not None:
115
+ if params.get("buttons_b", None) is not None:
138
116
  cargs.extend([
139
117
  "-b",
140
- *params.get("buttons_b")
118
+ *params.get("buttons_b", None)
141
119
  ])
142
- if params.get("timeout") is not None:
120
+ if params.get("timeout", None) is not None:
143
121
  cargs.extend([
144
122
  "-timeout",
145
- str(params.get("timeout"))
123
+ str(params.get("timeout", None))
146
124
  ])
147
- if params.get("timeout_to") is not None:
125
+ if params.get("timeout_to", None) is not None:
148
126
  cargs.extend([
149
127
  "-to",
150
- str(params.get("timeout_to"))
128
+ str(params.get("timeout_to", None))
151
129
  ])
152
130
  return cargs
153
131
 
@@ -173,9 +151,11 @@ def prompt_popup_outputs(
173
151
 
174
152
  def prompt_popup_execute(
175
153
  params: PromptPopupParameters,
176
- execution: Execution,
154
+ runner: Runner | None = None,
177
155
  ) -> PromptPopupOutputs:
178
156
  """
157
+ prompt_popup
158
+
179
159
  A command-line tool that pops up a window prompting user interaction with a
180
160
  message and buttons.
181
161
 
@@ -185,10 +165,12 @@ def prompt_popup_execute(
185
165
 
186
166
  Args:
187
167
  params: The parameters.
188
- execution: The execution object.
168
+ runner: Command runner.
189
169
  Returns:
190
170
  NamedTuple of outputs (described in `PromptPopupOutputs`).
191
171
  """
172
+ runner = runner or get_global_runner()
173
+ execution = runner.start_execution(PROMPT_POPUP_METADATA)
192
174
  params = execution.params(params)
193
175
  cargs = prompt_popup_cargs(params, execution)
194
176
  ret = prompt_popup_outputs(params, execution)
@@ -206,6 +188,8 @@ def prompt_popup(
206
188
  runner: Runner | None = None,
207
189
  ) -> PromptPopupOutputs:
208
190
  """
191
+ prompt_popup
192
+
209
193
  A command-line tool that pops up a window prompting user interaction with a
210
194
  message and buttons.
211
195
 
@@ -228,8 +212,6 @@ def prompt_popup(
228
212
  Returns:
229
213
  NamedTuple of outputs (described in `PromptPopupOutputs`).
230
214
  """
231
- runner = runner or get_global_runner()
232
- execution = runner.start_execution(PROMPT_POPUP_METADATA)
233
215
  params = prompt_popup_params(
234
216
  message=message,
235
217
  message_pause=message_pause,
@@ -238,13 +220,13 @@ def prompt_popup(
238
220
  timeout=timeout,
239
221
  timeout_to=timeout_to,
240
222
  )
241
- return prompt_popup_execute(params, execution)
223
+ return prompt_popup_execute(params, runner)
242
224
 
243
225
 
244
226
  __all__ = [
245
227
  "PROMPT_POPUP_METADATA",
246
228
  "PromptPopupOutputs",
247
- "PromptPopupParameters",
248
229
  "prompt_popup",
230
+ "prompt_popup_execute",
249
231
  "prompt_popup_params",
250
232
  ]
@@ -6,7 +6,7 @@ import pathlib
6
6
  from styxdefs import *
7
7
 
8
8
  PROMPT_USER_METADATA = Metadata(
9
- id="50f7b3456cf7fa2cd699f8ebd295c575df5c9675.boutiques",
9
+ id="a02a912e9e37f8366cbffb8b82daed3927eaceab.boutiques",
10
10
  name="prompt_user",
11
11
  package="afni",
12
12
  container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,47 +14,22 @@ PROMPT_USER_METADATA = Metadata(
14
14
 
15
15
 
16
16
  PromptUserParameters = typing.TypedDict('PromptUserParameters', {
17
- "__STYXTYPE__": typing.Literal["prompt_user"],
17
+ "@type": typing.NotRequired[typing.Literal["afni/prompt_user"]],
18
+ "pause_message": str,
19
+ "timeout": typing.NotRequired[float | None],
20
+ "timeout_alias": typing.NotRequired[float | None],
21
+ })
22
+ PromptUserParametersTagged = typing.TypedDict('PromptUserParametersTagged', {
23
+ "@type": typing.Literal["afni/prompt_user"],
18
24
  "pause_message": str,
19
25
  "timeout": typing.NotRequired[float | None],
20
26
  "timeout_alias": typing.NotRequired[float | None],
21
27
  })
22
-
23
-
24
- def dyn_cargs(
25
- t: str,
26
- ) -> typing.Any:
27
- """
28
- Get build cargs function by command type.
29
-
30
- Args:
31
- t: Command type.
32
- Returns:
33
- Build cargs function.
34
- """
35
- return {
36
- "prompt_user": prompt_user_cargs,
37
- }.get(t)
38
-
39
-
40
- def dyn_outputs(
41
- t: str,
42
- ) -> typing.Any:
43
- """
44
- Get build outputs function by command type.
45
-
46
- Args:
47
- t: Command type.
48
- Returns:
49
- Build outputs function.
50
- """
51
- return {
52
- }.get(t)
53
28
 
54
29
 
55
30
  class PromptUserOutputs(typing.NamedTuple):
56
31
  """
57
- Output object returned when calling `prompt_user(...)`.
32
+ Output object returned when calling `PromptUserParameters(...)`.
58
33
  """
59
34
  root: OutputPathType
60
35
  """Output root folder. This is the root folder for all outputs."""
@@ -64,7 +39,7 @@ def prompt_user_params(
64
39
  pause_message: str,
65
40
  timeout: float | None = None,
66
41
  timeout_alias: float | None = None,
67
- ) -> PromptUserParameters:
42
+ ) -> PromptUserParametersTagged:
68
43
  """
69
44
  Build parameters.
70
45
 
@@ -78,7 +53,7 @@ def prompt_user_params(
78
53
  Parameter dictionary
79
54
  """
80
55
  params = {
81
- "__STYXTYPE__": "prompt_user",
56
+ "@type": "afni/prompt_user",
82
57
  "pause_message": pause_message,
83
58
  }
84
59
  if timeout is not None:
@@ -105,17 +80,17 @@ def prompt_user_cargs(
105
80
  cargs.append("prompt_user")
106
81
  cargs.extend([
107
82
  "<-pause>",
108
- params.get("pause_message")
83
+ params.get("pause_message", None)
109
84
  ])
110
- if params.get("timeout") is not None:
85
+ if params.get("timeout", None) is not None:
111
86
  cargs.extend([
112
87
  "-timeout",
113
- str(params.get("timeout"))
88
+ str(params.get("timeout", None))
114
89
  ])
115
- if params.get("timeout_alias") is not None:
90
+ if params.get("timeout_alias", None) is not None:
116
91
  cargs.extend([
117
92
  "-to",
118
- str(params.get("timeout_alias"))
93
+ str(params.get("timeout_alias", None))
119
94
  ])
120
95
  return cargs
121
96
 
@@ -141,9 +116,11 @@ def prompt_user_outputs(
141
116
 
142
117
  def prompt_user_execute(
143
118
  params: PromptUserParameters,
144
- execution: Execution,
119
+ runner: Runner | None = None,
145
120
  ) -> PromptUserOutputs:
146
121
  """
122
+ prompt_user
123
+
147
124
  Tool that prompts a window requesting user input with a custom message.
148
125
 
149
126
  Author: AFNI Developers
@@ -152,10 +129,12 @@ def prompt_user_execute(
152
129
 
153
130
  Args:
154
131
  params: The parameters.
155
- execution: The execution object.
132
+ runner: Command runner.
156
133
  Returns:
157
134
  NamedTuple of outputs (described in `PromptUserOutputs`).
158
135
  """
136
+ runner = runner or get_global_runner()
137
+ execution = runner.start_execution(PROMPT_USER_METADATA)
159
138
  params = execution.params(params)
160
139
  cargs = prompt_user_cargs(params, execution)
161
140
  ret = prompt_user_outputs(params, execution)
@@ -170,6 +149,8 @@ def prompt_user(
170
149
  runner: Runner | None = None,
171
150
  ) -> PromptUserOutputs:
172
151
  """
152
+ prompt_user
153
+
173
154
  Tool that prompts a window requesting user input with a custom message.
174
155
 
175
156
  Author: AFNI Developers
@@ -186,20 +167,18 @@ def prompt_user(
186
167
  Returns:
187
168
  NamedTuple of outputs (described in `PromptUserOutputs`).
188
169
  """
189
- runner = runner or get_global_runner()
190
- execution = runner.start_execution(PROMPT_USER_METADATA)
191
170
  params = prompt_user_params(
192
171
  pause_message=pause_message,
193
172
  timeout=timeout,
194
173
  timeout_alias=timeout_alias,
195
174
  )
196
- return prompt_user_execute(params, execution)
175
+ return prompt_user_execute(params, runner)
197
176
 
198
177
 
199
178
  __all__ = [
200
179
  "PROMPT_USER_METADATA",
201
180
  "PromptUserOutputs",
202
- "PromptUserParameters",
203
181
  "prompt_user",
182
+ "prompt_user_execute",
204
183
  "prompt_user_params",
205
184
  ]