niwrap-afni 0.6.2__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/v__4_daverage.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__4_DAVERAGE_METADATA = Metadata(
-    id="48ae0996463928a201144da1e797f6f4415ed5c4.boutiques",
+    id="cfb332d0717a18e6198e0993e02a43b342500a1f.boutiques",
     name="@4Daverage",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,20 @@ V__4_DAVERAGE_METADATA = Metadata(
 
 
 V4DaverageParameters = typing.TypedDict('V4DaverageParameters', {
-    "__STYXTYPE__": typing.Literal["@4Daverage"],
+    "@type": typing.NotRequired[typing.Literal["afni/@4Daverage"]],
+    "output_prefix": str,
+    "input_files": list[InputPathType],
+})
+V4DaverageParametersTagged = typing.TypedDict('V4DaverageParametersTagged', {
+    "@type": typing.Literal["afni/@4Daverage"],
     "output_prefix": str,
     "input_files": list[InputPathType],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@4Daverage": v__4_daverage_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class V4DaverageOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__4_daverage(...)`.
+    Output object returned when calling `V4DaverageParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -62,7 +36,7 @@ class V4DaverageOutputs(typing.NamedTuple):
 def v__4_daverage_params(
     output_prefix: str,
     input_files: list[InputPathType],
-) -> V4DaverageParameters:
+) -> V4DaverageParametersTagged:
     """
     Build parameters.
     
@@ -74,7 +48,7 @@ def v__4_daverage_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@4Daverage",
+        "@type": "afni/@4Daverage",
         "output_prefix": output_prefix,
         "input_files": input_files,
     }
@@ -96,8 +70,8 @@ def v__4_daverage_cargs(
     """
     cargs = []
     cargs.append("@4Daverage")
-    cargs.append(params.get("output_prefix"))
-    cargs.extend([execution.input_file(f) for f in params.get("input_files")])
+    cargs.append(params.get("output_prefix", None))
+    cargs.extend([execution.input_file(f) for f in params.get("input_files", None)])
     return cargs
 
 
@@ -122,9 +96,11 @@ def v__4_daverage_outputs(
 
 def v__4_daverage_execute(
     params: V4DaverageParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> V4DaverageOutputs:
     """
+    @4Daverage
+    
     Script for computing average 3D+time bricks using 3Dcalc.
     
     Author: AFNI Developers
@@ -133,10 +109,12 @@ def v__4_daverage_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V4DaverageOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__4_DAVERAGE_METADATA)
     params = execution.params(params)
     cargs = v__4_daverage_cargs(params, execution)
     ret = v__4_daverage_outputs(params, execution)
@@ -150,6 +128,8 @@ def v__4_daverage(
     runner: Runner | None = None,
 ) -> V4DaverageOutputs:
     """
+    @4Daverage
+    
     Script for computing average 3D+time bricks using 3Dcalc.
     
     Author: AFNI Developers
@@ -164,19 +144,17 @@ def v__4_daverage(
     Returns:
         NamedTuple of outputs (described in `V4DaverageOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__4_DAVERAGE_METADATA)
     params = v__4_daverage_params(
         output_prefix=output_prefix,
         input_files=input_files,
     )
-    return v__4_daverage_execute(params, execution)
+    return v__4_daverage_execute(params, runner)
 
 
 __all__ = [
     "V4DaverageOutputs",
-    "V4DaverageParameters",
     "V__4_DAVERAGE_METADATA",
     "v__4_daverage",
+    "v__4_daverage_execute",
     "v__4_daverage_params",
 ]

niwrap_afni/afni/v__add_edge.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__ADD_EDGE_METADATA = Metadata(
-    id="06a72814ee44ef3e2b9ca6f055c466f63cd08827.boutiques",
+    id="8cd52f727a7c5099091545565ae09d97e24fe8dd.boutiques",
     name="@AddEdge",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,25 @@ V__ADD_EDGE_METADATA = Metadata(
 
 
 VAddEdgeParameters = typing.TypedDict('VAddEdgeParameters', {
-    "__STYXTYPE__": typing.Literal["@AddEdge"],
+    "@type": typing.NotRequired[typing.Literal["afni/@AddEdge"]],
+    "input_files": list[InputPathType],
+    "examine_list": typing.NotRequired[str | None],
+    "ax_mont": typing.NotRequired[str | None],
+    "ax_geom": typing.NotRequired[str | None],
+    "sag_geom": typing.NotRequired[str | None],
+    "layout_file": typing.NotRequired[str | None],
+    "no_layout": bool,
+    "edge_percentile": typing.NotRequired[int | None],
+    "single_edge": bool,
+    "opacity": typing.NotRequired[int | None],
+    "keep_temp": bool,
+    "no_deoblique": bool,
+    "auto_record": bool,
+    "auto": bool,
+    "no_auto": bool,
+})
+VAddEdgeParametersTagged = typing.TypedDict('VAddEdgeParametersTagged', {
+    "@type": typing.Literal["afni/@AddEdge"],
     "input_files": list[InputPathType],
     "examine_list": typing.NotRequired[str | None],
     "ax_mont": typing.NotRequired[str | None],
@@ -31,43 +49,11 @@ VAddEdgeParameters = typing.TypedDict('VAddEdgeParameters', {
     "auto": bool,
     "no_auto": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@AddEdge": v__add_edge_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@AddEdge": v__add_edge_outputs,
-    }.get(t)
 
 
 class VAddEdgeOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__add_edge(...)`.
+    Output object returned when calling `VAddEdgeParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -98,7 +84,7 @@ def v__add_edge_params(
     auto_record: bool = False,
     auto: bool = False,
     no_auto: bool = False,
-) -> VAddEdgeParameters:
+) -> VAddEdgeParametersTagged:
     """
     Build parameters.
     
@@ -123,7 +109,7 @@ def v__add_edge_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@AddEdge",
+        "@type": "afni/@AddEdge",
         "input_files": input_files,
         "no_layout": no_layout,
         "single_edge": single_edge,
@@ -165,55 +151,55 @@ def v__add_edge_cargs(
     """
     cargs = []
     cargs.append("@AddEdge")
-    cargs.extend([execution.input_file(f) for f in params.get("input_files")])
-    if params.get("examine_list") is not None:
+    cargs.extend([execution.input_file(f) for f in params.get("input_files", None)])
+    if params.get("examine_list", None) is not None:
         cargs.extend([
             "-examinelist",
-            params.get("examine_list")
+            params.get("examine_list", None)
         ])
-    if params.get("ax_mont") is not None:
+    if params.get("ax_mont", None) is not None:
         cargs.extend([
             "-ax_mont",
-            params.get("ax_mont")
+            params.get("ax_mont", None)
         ])
-    if params.get("ax_geom") is not None:
+    if params.get("ax_geom", None) is not None:
         cargs.extend([
             "-ax_geom",
-            params.get("ax_geom")
+            params.get("ax_geom", None)
         ])
-    if params.get("sag_geom") is not None:
+    if params.get("sag_geom", None) is not None:
         cargs.extend([
             "-sag_geom",
-            params.get("sag_geom")
+            params.get("sag_geom", None)
         ])
-    if params.get("layout_file") is not None:
+    if params.get("layout_file", None) is not None:
         cargs.extend([
             "-layout",
-            params.get("layout_file")
+            params.get("layout_file", None)
         ])
-    if params.get("no_layout"):
+    if params.get("no_layout", False):
         cargs.append("-no_layout")
-    if params.get("edge_percentile") is not None:
+    if params.get("edge_percentile", None) is not None:
         cargs.extend([
             "-edge_percentile",
-            str(params.get("edge_percentile"))
+            str(params.get("edge_percentile", None))
         ])
-    if params.get("single_edge"):
+    if params.get("single_edge", False):
         cargs.append("-single_edge")
-    if params.get("opacity") is not None:
+    if params.get("opacity", None) is not None:
         cargs.extend([
             "-opa",
-            str(params.get("opacity"))
+            str(params.get("opacity", None))
         ])
-    if params.get("keep_temp"):
+    if params.get("keep_temp", False):
         cargs.append("-keep_temp")
-    if params.get("no_deoblique"):
+    if params.get("no_deoblique", False):
         cargs.append("-no_deoblique")
-    if params.get("auto_record"):
+    if params.get("auto_record", False):
         cargs.append("-auto_record")
-    if params.get("auto"):
+    if params.get("auto", False):
         cargs.append("-auto")
-    if params.get("no_auto"):
+    if params.get("no_auto", False):
         cargs.append("-no_auto")
     return cargs
 
@@ -243,11 +229,13 @@ def v__add_edge_outputs(
 
 def v__add_edge_execute(
     params: VAddEdgeParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VAddEdgeOutputs:
     """
-    A script to create composite edge-enhanced datasets and drive the AFNI interface
-    to display the results.
+    @AddEdge
+    
+    A script to create composite edge-enhanced datasets and drive the AFNI
+    interface to display the results.
     
     Author: AFNI Developers
     
@@ -255,10 +243,12 @@ def v__add_edge_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VAddEdgeOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__ADD_EDGE_METADATA)
     params = execution.params(params)
     cargs = v__add_edge_cargs(params, execution)
     ret = v__add_edge_outputs(params, execution)
@@ -285,8 +275,10 @@ def v__add_edge(
     runner: Runner | None = None,
 ) -> VAddEdgeOutputs:
     """
-    A script to create composite edge-enhanced datasets and drive the AFNI interface
-    to display the results.
+    @AddEdge
+    
+    A script to create composite edge-enhanced datasets and drive the AFNI
+    interface to display the results.
     
     Author: AFNI Developers
     
@@ -313,8 +305,6 @@ def v__add_edge(
     Returns:
         NamedTuple of outputs (described in `VAddEdgeOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__ADD_EDGE_METADATA)
     params = v__add_edge_params(
         input_files=input_files,
         examine_list=examine_list,
@@ -332,13 +322,13 @@ def v__add_edge(
         auto=auto,
         no_auto=no_auto,
     )
-    return v__add_edge_execute(params, execution)
+    return v__add_edge_execute(params, runner)
 
 
 __all__ = [
     "VAddEdgeOutputs",
-    "VAddEdgeParameters",
     "V__ADD_EDGE_METADATA",
     "v__add_edge",
+    "v__add_edge_execute",
     "v__add_edge_params",
 ]

niwrap_afni/afni/v__afni_env.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__AFNI_ENV_METADATA = Metadata(
-    id="52cb0ae7352ad7f5ead3b8244b3ec7d72851eecc.boutiques",
+    id="94c9a0b39d409448fae9a4947b634d3afd5edb15.boutiques",
     name="@AfniEnv",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,20 @@ V__AFNI_ENV_METADATA = Metadata(
 
 
 VAfniEnvParameters = typing.TypedDict('VAfniEnvParameters', {
-    "__STYXTYPE__": typing.Literal["@AfniEnv"],
+    "@type": typing.NotRequired[typing.Literal["afni/@AfniEnv"]],
+    "set_flag": typing.NotRequired[list[str] | None],
+    "unset_flag": typing.NotRequired[str | None],
+    "get_flag": typing.NotRequired[str | None],
+    "help_flag": bool,
+    "help_web_flag": bool,
+    "help_web_flag_alias": bool,
+    "help_view_flag": bool,
+    "help_view_flag_alias": bool,
+    "all_opts_flag": bool,
+    "help_find_flag": typing.NotRequired[str | None],
+})
+VAfniEnvParametersTagged = typing.TypedDict('VAfniEnvParametersTagged', {
+    "@type": typing.Literal["afni/@AfniEnv"],
     "set_flag": typing.NotRequired[list[str] | None],
     "unset_flag": typing.NotRequired[str | None],
     "get_flag": typing.NotRequired[str | None],
@@ -26,42 +39,11 @@ VAfniEnvParameters = typing.TypedDict('VAfniEnvParameters', {
     "all_opts_flag": bool,
     "help_find_flag": typing.NotRequired[str | None],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@AfniEnv": v__afni_env_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class VAfniEnvOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__afni_env(...)`.
+    Output object returned when calling `VAfniEnvParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -78,7 +60,7 @@ def v__afni_env_params(
     help_view_flag_alias: bool = False,
     all_opts_flag: bool = False,
     help_find_flag: str | None = None,
-) -> VAfniEnvParameters:
+) -> VAfniEnvParametersTagged:
     """
     Build parameters.
     
@@ -98,7 +80,7 @@ def v__afni_env_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@AfniEnv",
+        "@type": "afni/@AfniEnv",
         "help_flag": help_flag,
         "help_web_flag": help_web_flag,
         "help_web_flag_alias": help_web_flag_alias,
@@ -132,37 +114,37 @@ def v__afni_env_cargs(
     """
     cargs = []
     cargs.append("@AfniEnv")
-    if params.get("set_flag") is not None:
+    if params.get("set_flag", None) is not None:
         cargs.extend([
             "-set",
-            *params.get("set_flag")
+            *params.get("set_flag", None)
         ])
-    if params.get("unset_flag") is not None:
+    if params.get("unset_flag", None) is not None:
         cargs.extend([
             "-unset",
-            params.get("unset_flag")
+            params.get("unset_flag", None)
         ])
-    if params.get("get_flag") is not None:
+    if params.get("get_flag", None) is not None:
         cargs.extend([
             "-get",
-            params.get("get_flag")
+            params.get("get_flag", None)
         ])
-    if params.get("help_flag"):
+    if params.get("help_flag", False):
         cargs.append("-help")
-    if params.get("help_web_flag"):
+    if params.get("help_web_flag", False):
         cargs.append("-h_web")
-    if params.get("help_web_flag_alias"):
+    if params.get("help_web_flag_alias", False):
         cargs.append("-hweb")
-    if params.get("help_view_flag"):
+    if params.get("help_view_flag", False):
         cargs.append("-h_view")
-    if params.get("help_view_flag_alias"):
+    if params.get("help_view_flag_alias", False):
         cargs.append("-hview")
-    if params.get("all_opts_flag"):
+    if params.get("all_opts_flag", False):
         cargs.append("-all_opts")
-    if params.get("help_find_flag") is not None:
+    if params.get("help_find_flag", None) is not None:
         cargs.extend([
             "-h_find",
-            params.get("help_find_flag")
+            params.get("help_find_flag", None)
         ])
     return cargs
 
@@ -188,9 +170,11 @@ def v__afni_env_outputs(
 
 def v__afni_env_execute(
     params: VAfniEnvParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VAfniEnvOutputs:
     """
+    @AfniEnv
+    
     Script to set or unset an AFNI environment variable in your .afnirc file.
     
     Author: AFNI Developers
@@ -199,10 +183,12 @@ def v__afni_env_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VAfniEnvOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__AFNI_ENV_METADATA)
     params = execution.params(params)
     cargs = v__afni_env_cargs(params, execution)
     ret = v__afni_env_outputs(params, execution)
@@ -224,6 +210,8 @@ def v__afni_env(
     runner: Runner | None = None,
 ) -> VAfniEnvOutputs:
     """
+    @AfniEnv
+    
     Script to set or unset an AFNI environment variable in your .afnirc file.
     
     Author: AFNI Developers
@@ -246,8 +234,6 @@ def v__afni_env(
     Returns:
         NamedTuple of outputs (described in `VAfniEnvOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__AFNI_ENV_METADATA)
     params = v__afni_env_params(
         set_flag=set_flag,
         unset_flag=unset_flag,
@@ -260,13 +246,13 @@ def v__afni_env(
         all_opts_flag=all_opts_flag,
         help_find_flag=help_find_flag,
     )
-    return v__afni_env_execute(params, execution)
+    return v__afni_env_execute(params, runner)
 
 
 __all__ = [
     "VAfniEnvOutputs",
-    "VAfniEnvParameters",
     "V__AFNI_ENV_METADATA",
     "v__afni_env",
+    "v__afni_env_execute",
     "v__afni_env_params",
 ]