niwrap-afni 0.6.2__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/v__djunct_overlap_check.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__DJUNCT_OVERLAP_CHECK_METADATA = Metadata(
-    id="a8443d34f687d1b2ea3ba63dfe89d00208145343.boutiques",
+    id="accf029860afec40eae3dd6f912ca3a7a899fc51.boutiques",
     name="@djunct_overlap_check",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,34 @@ V__DJUNCT_OVERLAP_CHECK_METADATA = Metadata(
 
 
 VDjunctOverlapCheckParameters = typing.TypedDict('VDjunctOverlapCheckParameters', {
-    "__STYXTYPE__": typing.Literal["@djunct_overlap_check"],
+    "@type": typing.NotRequired[typing.Literal["afni/@djunct_overlap_check"]],
+    "ulay": InputPathType,
+    "olay": InputPathType,
+    "prefix": str,
+    "box_focus_slices": typing.NotRequired[InputPathType | None],
+    "montgap": typing.NotRequired[float | None],
+    "montcolor": typing.NotRequired[str | None],
+    "cbar": typing.NotRequired[str | None],
+    "opacity": typing.NotRequired[float | None],
+    "zerocolor": typing.NotRequired[str | None],
+    "set_dicom_xyz": typing.NotRequired[list[float] | None],
+    "ulay_range": typing.NotRequired[list[float] | None],
+    "ulay_range_nz": typing.NotRequired[list[float] | None],
+    "montx": typing.NotRequired[float | None],
+    "monty": typing.NotRequired[float | None],
+    "montx_cat": typing.NotRequired[float | None],
+    "monty_cat": typing.NotRequired[float | None],
+    "label_mode": typing.NotRequired[str | None],
+    "pbar_posonly_off": bool,
+    "edgy_ulay": bool,
+    "set_dicom_xyz_off": bool,
+    "no_cor": bool,
+    "no_axi": bool,
+    "no_sag": bool,
+    "no_clean": bool,
+})
+VDjunctOverlapCheckParametersTagged = typing.TypedDict('VDjunctOverlapCheckParametersTagged', {
+    "@type": typing.Literal["afni/@djunct_overlap_check"],
     "ulay": InputPathType,
     "olay": InputPathType,
     "prefix": str,
@@ -40,42 +67,11 @@ VDjunctOverlapCheckParameters = typing.TypedDict('VDjunctOverlapCheckParameters'
     "no_sag": bool,
     "no_clean": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@djunct_overlap_check": v__djunct_overlap_check_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class VDjunctOverlapCheckOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__djunct_overlap_check(...)`.
+    Output object returned when calling `VDjunctOverlapCheckParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -106,7 +102,7 @@ def v__djunct_overlap_check_params(
     no_axi: bool = False,
     no_sag: bool = False,
     no_clean: bool = False,
-) -> VDjunctOverlapCheckParameters:
+) -> VDjunctOverlapCheckParametersTagged:
     """
     Build parameters.
     
@@ -139,7 +135,7 @@ def v__djunct_overlap_check_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@djunct_overlap_check",
+        "@type": "afni/@djunct_overlap_check",
         "ulay": ulay,
         "olay": olay,
         "prefix": prefix,
@@ -197,89 +193,89 @@ def v__djunct_overlap_check_cargs(
     """
     cargs = []
     cargs.append("@djunct_overlap_check")
-    cargs.append(execution.input_file(params.get("ulay")))
-    cargs.append(execution.input_file(params.get("olay")))
-    cargs.append(params.get("prefix"))
-    if params.get("box_focus_slices") is not None:
-        cargs.append(execution.input_file(params.get("box_focus_slices")))
-    if params.get("montgap") is not None:
+    cargs.append(execution.input_file(params.get("ulay", None)))
+    cargs.append(execution.input_file(params.get("olay", None)))
+    cargs.append(params.get("prefix", None))
+    if params.get("box_focus_slices", None) is not None:
+        cargs.append(execution.input_file(params.get("box_focus_slices", None)))
+    if params.get("montgap", None) is not None:
         cargs.extend([
             "-montgap",
-            str(params.get("montgap"))
+            str(params.get("montgap", None))
         ])
-    if params.get("montcolor") is not None:
+    if params.get("montcolor", None) is not None:
         cargs.extend([
             "-montcolor",
-            params.get("montcolor")
+            params.get("montcolor", None)
         ])
-    if params.get("cbar") is not None:
+    if params.get("cbar", None) is not None:
         cargs.extend([
             "-cbar",
-            params.get("cbar")
+            params.get("cbar", None)
         ])
-    if params.get("opacity") is not None:
+    if params.get("opacity", None) is not None:
         cargs.extend([
             "-opacity",
-            str(params.get("opacity"))
+            str(params.get("opacity", None))
         ])
-    if params.get("zerocolor") is not None:
+    if params.get("zerocolor", None) is not None:
         cargs.extend([
             "-zerocolor",
-            params.get("zerocolor")
+            params.get("zerocolor", None)
         ])
-    if params.get("set_dicom_xyz") is not None:
+    if params.get("set_dicom_xyz", None) is not None:
         cargs.extend([
             "-set_dicom_xyz",
-            *map(str, params.get("set_dicom_xyz"))
+            *map(str, params.get("set_dicom_xyz", None))
         ])
-    if params.get("ulay_range") is not None:
+    if params.get("ulay_range", None) is not None:
         cargs.extend([
             "-ulay_range",
-            *map(str, params.get("ulay_range"))
+            *map(str, params.get("ulay_range", None))
         ])
-    if params.get("ulay_range_nz") is not None:
+    if params.get("ulay_range_nz", None) is not None:
         cargs.extend([
             "-ulay_range_nz",
-            *map(str, params.get("ulay_range_nz"))
+            *map(str, params.get("ulay_range_nz", None))
         ])
-    if params.get("montx") is not None:
+    if params.get("montx", None) is not None:
         cargs.extend([
             "-montx",
-            str(params.get("montx"))
+            str(params.get("montx", None))
         ])
-    if params.get("monty") is not None:
+    if params.get("monty", None) is not None:
         cargs.extend([
             "-monty",
-            str(params.get("monty"))
+            str(params.get("monty", None))
         ])
-    if params.get("montx_cat") is not None:
+    if params.get("montx_cat", None) is not None:
         cargs.extend([
             "-montx_cat",
-            str(params.get("montx_cat"))
+            str(params.get("montx_cat", None))
         ])
-    if params.get("monty_cat") is not None:
+    if params.get("monty_cat", None) is not None:
         cargs.extend([
             "-monty_cat",
-            str(params.get("monty_cat"))
+            str(params.get("monty_cat", None))
         ])
-    if params.get("label_mode") is not None:
+    if params.get("label_mode", None) is not None:
         cargs.extend([
             "-label_mode",
-            params.get("label_mode")
+            params.get("label_mode", None)
         ])
-    if params.get("pbar_posonly_off"):
+    if params.get("pbar_posonly_off", False):
         cargs.append("-pbar_posonly_off")
-    if params.get("edgy_ulay"):
+    if params.get("edgy_ulay", False):
         cargs.append("-edgy_ulay")
-    if params.get("set_dicom_xyz_off"):
+    if params.get("set_dicom_xyz_off", False):
         cargs.append("-set_dicom_xyz_off")
-    if params.get("no_cor"):
+    if params.get("no_cor", False):
         cargs.append("-no_cor")
-    if params.get("no_axi"):
+    if params.get("no_axi", False):
         cargs.append("-no_axi")
-    if params.get("no_sag"):
+    if params.get("no_sag", False):
         cargs.append("-no_sag")
-    if params.get("no_clean"):
+    if params.get("no_clean", False):
         cargs.append("-no_clean")
     return cargs
 
@@ -305,9 +301,11 @@ def v__djunct_overlap_check_outputs(
 
 def v__djunct_overlap_check_execute(
     params: VDjunctOverlapCheckParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VDjunctOverlapCheckOutputs:
     """
+    @djunct_overlap_check
+    
     A helper script for visualizing overlap between datasets in AFNI.
     
     Author: AFNI Developers
@@ -316,10 +314,12 @@ def v__djunct_overlap_check_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VDjunctOverlapCheckOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__DJUNCT_OVERLAP_CHECK_METADATA)
     params = execution.params(params)
     cargs = v__djunct_overlap_check_cargs(params, execution)
     ret = v__djunct_overlap_check_outputs(params, execution)
@@ -355,6 +355,8 @@ def v__djunct_overlap_check(
     runner: Runner | None = None,
 ) -> VDjunctOverlapCheckOutputs:
     """
+    @djunct_overlap_check
+    
     A helper script for visualizing overlap between datasets in AFNI.
     
     Author: AFNI Developers
@@ -390,8 +392,6 @@ def v__djunct_overlap_check(
     Returns:
         NamedTuple of outputs (described in `VDjunctOverlapCheckOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__DJUNCT_OVERLAP_CHECK_METADATA)
     params = v__djunct_overlap_check_params(
         ulay=ulay,
         olay=olay,
@@ -418,13 +418,13 @@ def v__djunct_overlap_check(
         no_sag=no_sag,
         no_clean=no_clean,
     )
-    return v__djunct_overlap_check_execute(params, execution)
+    return v__djunct_overlap_check_execute(params, runner)
 
 
 __all__ = [
     "VDjunctOverlapCheckOutputs",
-    "VDjunctOverlapCheckParameters",
     "V__DJUNCT_OVERLAP_CHECK_METADATA",
     "v__djunct_overlap_check",
+    "v__djunct_overlap_check_execute",
     "v__djunct_overlap_check_params",
 ]

niwrap_afni/afni/v__djunct_ssw_intermed_edge_imgs.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__DJUNCT_SSW_INTERMED_EDGE_IMGS_METADATA = Metadata(
-    id="507a949957346d46571199c4a62b2855ae7d092e.boutiques",
+    id="73d44565de02bb65620475a843396d62b14f4d35.boutiques",
     name="@djunct_ssw_intermed_edge_imgs",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,23 @@ V__DJUNCT_SSW_INTERMED_EDGE_IMGS_METADATA = Metadata(
 
 
 VDjunctSswIntermedEdgeImgsParameters = typing.TypedDict('VDjunctSswIntermedEdgeImgsParameters', {
-    "__STYXTYPE__": typing.Literal["@djunct_ssw_intermed_edge_imgs"],
+    "@type": typing.NotRequired[typing.Literal["afni/@djunct_ssw_intermed_edge_imgs"]],
+    "prefix": str,
+    "ulay": InputPathType,
+    "olay": InputPathType,
+    "box_focus_slices": typing.NotRequired[str | None],
+    "montgap": typing.NotRequired[str | None],
+    "cbar": typing.NotRequired[str | None],
+    "ulay_range": typing.NotRequired[str | None],
+    "montx": typing.NotRequired[str | None],
+    "monty": typing.NotRequired[str | None],
+    "help_view": bool,
+    "help": bool,
+    "version": bool,
+    "no_clean": bool,
+})
+VDjunctSswIntermedEdgeImgsParametersTagged = typing.TypedDict('VDjunctSswIntermedEdgeImgsParametersTagged', {
+    "@type": typing.Literal["afni/@djunct_ssw_intermed_edge_imgs"],
     "prefix": str,
     "ulay": InputPathType,
     "olay": InputPathType,
@@ -29,42 +45,11 @@ VDjunctSswIntermedEdgeImgsParameters = typing.TypedDict('VDjunctSswIntermedEdgeI
     "version": bool,
     "no_clean": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@djunct_ssw_intermed_edge_imgs": v__djunct_ssw_intermed_edge_imgs_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class VDjunctSswIntermedEdgeImgsOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__djunct_ssw_intermed_edge_imgs(...)`.
+    Output object returned when calling `VDjunctSswIntermedEdgeImgsParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -84,7 +69,7 @@ def v__djunct_ssw_intermed_edge_imgs_params(
     help_: bool = False,
     version: bool = False,
     no_clean: bool = False,
-) -> VDjunctSswIntermedEdgeImgsParameters:
+) -> VDjunctSswIntermedEdgeImgsParametersTagged:
     """
     Build parameters.
     
@@ -106,7 +91,7 @@ def v__djunct_ssw_intermed_edge_imgs_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@djunct_ssw_intermed_edge_imgs",
+        "@type": "afni/@djunct_ssw_intermed_edge_imgs",
         "prefix": prefix,
         "ulay": ulay,
         "olay": olay,
@@ -147,53 +132,53 @@ def v__djunct_ssw_intermed_edge_imgs_cargs(
     cargs.append("@djunct_ssw_intermed_edge_imgs")
     cargs.extend([
         "-prefix",
-        params.get("prefix")
+        params.get("prefix", None)
     ])
     cargs.extend([
         "-ulay",
-        execution.input_file(params.get("ulay"))
+        execution.input_file(params.get("ulay", None))
     ])
     cargs.extend([
         "-olay",
-        execution.input_file(params.get("olay"))
+        execution.input_file(params.get("olay", None))
     ])
-    if params.get("box_focus_slices") is not None:
+    if params.get("box_focus_slices", None) is not None:
         cargs.extend([
             "-box_focus_slices",
-            params.get("box_focus_slices")
+            params.get("box_focus_slices", None)
         ])
-    if params.get("montgap") is not None:
+    if params.get("montgap", None) is not None:
         cargs.extend([
             "-montgap",
-            params.get("montgap")
+            params.get("montgap", None)
         ])
-    if params.get("cbar") is not None:
+    if params.get("cbar", None) is not None:
         cargs.extend([
             "-cbar",
-            params.get("cbar")
+            params.get("cbar", None)
         ])
-    if params.get("ulay_range") is not None:
+    if params.get("ulay_range", None) is not None:
         cargs.extend([
             "-ulay_range",
-            params.get("ulay_range")
+            params.get("ulay_range", None)
         ])
-    if params.get("montx") is not None:
+    if params.get("montx", None) is not None:
         cargs.extend([
             "-montx",
-            params.get("montx")
+            params.get("montx", None)
         ])
-    if params.get("monty") is not None:
+    if params.get("monty", None) is not None:
         cargs.extend([
             "-monty",
-            params.get("monty")
+            params.get("monty", None)
         ])
-    if params.get("help_view"):
+    if params.get("help_view", False):
         cargs.append("-hview")
-    if params.get("help"):
+    if params.get("help", False):
         cargs.append("-help")
-    if params.get("version"):
+    if params.get("version", False):
         cargs.append("-ver")
-    if params.get("no_clean"):
+    if params.get("no_clean", False):
         cargs.append("-no_clean")
     return cargs
 
@@ -219,10 +204,13 @@ def v__djunct_ssw_intermed_edge_imgs_outputs(
 
 def v__djunct_ssw_intermed_edge_imgs_execute(
     params: VDjunctSswIntermedEdgeImgsParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VDjunctSswIntermedEdgeImgsOutputs:
     """
-    Helper script to generate intermediate edge images for SSW-related processing.
+    @djunct_ssw_intermed_edge_imgs
+    
+    Helper script to generate intermediate edge images for SSW-related
+    processing.
     
     Author: AFNI Developers
     
@@ -230,10 +218,12 @@ def v__djunct_ssw_intermed_edge_imgs_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VDjunctSswIntermedEdgeImgsOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__DJUNCT_SSW_INTERMED_EDGE_IMGS_METADATA)
     params = execution.params(params)
     cargs = v__djunct_ssw_intermed_edge_imgs_cargs(params, execution)
     ret = v__djunct_ssw_intermed_edge_imgs_outputs(params, execution)
@@ -258,7 +248,10 @@ def v__djunct_ssw_intermed_edge_imgs(
     runner: Runner | None = None,
 ) -> VDjunctSswIntermedEdgeImgsOutputs:
     """
-    Helper script to generate intermediate edge images for SSW-related processing.
+    @djunct_ssw_intermed_edge_imgs
+    
+    Helper script to generate intermediate edge images for SSW-related
+    processing.
     
     Author: AFNI Developers
     
@@ -282,8 +275,6 @@ def v__djunct_ssw_intermed_edge_imgs(
     Returns:
         NamedTuple of outputs (described in `VDjunctSswIntermedEdgeImgsOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__DJUNCT_SSW_INTERMED_EDGE_IMGS_METADATA)
     params = v__djunct_ssw_intermed_edge_imgs_params(
         prefix=prefix,
         ulay=ulay,
@@ -299,13 +290,13 @@ def v__djunct_ssw_intermed_edge_imgs(
         version=version,
         no_clean=no_clean,
     )
-    return v__djunct_ssw_intermed_edge_imgs_execute(params, execution)
+    return v__djunct_ssw_intermed_edge_imgs_execute(params, runner)
 
 
 __all__ = [
     "VDjunctSswIntermedEdgeImgsOutputs",
-    "VDjunctSswIntermedEdgeImgsParameters",
     "V__DJUNCT_SSW_INTERMED_EDGE_IMGS_METADATA",
     "v__djunct_ssw_intermed_edge_imgs",
+    "v__djunct_ssw_intermed_edge_imgs_execute",
     "v__djunct_ssw_intermed_edge_imgs_params",
 ]

niwrap_afni/afni/v__do_examples.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__DO_EXAMPLES_METADATA = Metadata(
-    id="041620951ff1456ed8b022d545939d5cc49449c1.boutiques",
+    id="47272bd0f3dfa19e13c057cdd5402823540cb26b.boutiques",
     name="@DO.examples",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,18 @@ V__DO_EXAMPLES_METADATA = Metadata(
 
 
 VDoExamplesParameters = typing.TypedDict('VDoExamplesParameters', {
-    "__STYXTYPE__": typing.Literal["@DO.examples"],
+    "@type": typing.NotRequired[typing.Literal["afni/@DO.examples"]],
+    "auto_test": bool,
+})
+VDoExamplesParametersTagged = typing.TypedDict('VDoExamplesParametersTagged', {
+    "@type": typing.Literal["afni/@DO.examples"],
     "auto_test": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@DO.examples": v__do_examples_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@DO.examples": v__do_examples_outputs,
-    }.get(t)
 
 
 class VDoExamplesOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__do_examples(...)`.
+    Output object returned when calling `VDoExamplesParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -63,7 +35,7 @@ class VDoExamplesOutputs(typing.NamedTuple):
 
 def v__do_examples_params(
     auto_test: bool = False,
-) -> VDoExamplesParameters:
+) -> VDoExamplesParametersTagged:
     """
     Build parameters.
     
@@ -75,7 +47,7 @@ def v__do_examples_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@DO.examples",
+        "@type": "afni/@DO.examples",
         "auto_test": auto_test,
     }
     return params
@@ -96,7 +68,7 @@ def v__do_examples_cargs(
     """
     cargs = []
     cargs.append("@DO.examples")
-    if params.get("auto_test"):
+    if params.get("auto_test", False):
         cargs.append("-auto_test")
     return cargs
 
@@ -123,9 +95,11 @@ def v__do_examples_outputs(
 
 def v__do_examples_execute(
     params: VDoExamplesParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VDoExamplesOutputs:
     """
+    @DO.examples
+    
     A script to illustrate the use of Displayable Objects in SUMA.
     
     Author: AFNI Developers
@@ -134,10 +108,12 @@ def v__do_examples_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VDoExamplesOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__DO_EXAMPLES_METADATA)
     params = execution.params(params)
     cargs = v__do_examples_cargs(params, execution)
     ret = v__do_examples_outputs(params, execution)
@@ -150,6 +126,8 @@ def v__do_examples(
     runner: Runner | None = None,
 ) -> VDoExamplesOutputs:
     """
+    @DO.examples
+    
     A script to illustrate the use of Displayable Objects in SUMA.
     
     Author: AFNI Developers
@@ -164,18 +142,16 @@ def v__do_examples(
     Returns:
         NamedTuple of outputs (described in `VDoExamplesOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__DO_EXAMPLES_METADATA)
     params = v__do_examples_params(
         auto_test=auto_test,
     )
-    return v__do_examples_execute(params, execution)
+    return v__do_examples_execute(params, runner)
 
 
 __all__ = [
     "VDoExamplesOutputs",
-    "VDoExamplesParameters",
     "V__DO_EXAMPLES_METADATA",
     "v__do_examples",
+    "v__do_examples_execute",
     "v__do_examples_params",
 ]