niwrap-afni 0.6.2__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/dsetstat2p.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 DSETSTAT2P_METADATA = Metadata(
-    id="fb3a7f92243aa4cb63be144e3742b4a9615c1b61.boutiques",
+    id="763f6057636a308d7dcd89787bf6f408096c2b9b.boutiques",
     name="dsetstat2p",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,16 @@ DSETSTAT2P_METADATA = Metadata(
 
 
 Dsetstat2pParameters = typing.TypedDict('Dsetstat2pParameters', {
-    "__STYXTYPE__": typing.Literal["dsetstat2p"],
+    "@type": typing.NotRequired[typing.Literal["afni/dsetstat2p"]],
+    "dataset": str,
+    "statval": float,
+    "bisided": bool,
+    "two_sided": bool,
+    "one_sided": bool,
+    "quiet": bool,
+})
+Dsetstat2pParametersTagged = typing.TypedDict('Dsetstat2pParametersTagged', {
+    "@type": typing.Literal["afni/dsetstat2p"],
     "dataset": str,
     "statval": float,
     "bisided": bool,
@@ -22,43 +31,11 @@ Dsetstat2pParameters = typing.TypedDict('Dsetstat2pParameters', {
     "one_sided": bool,
     "quiet": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "dsetstat2p": dsetstat2p_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "dsetstat2p": dsetstat2p_outputs,
-    }.get(t)
 
 
 class Dsetstat2pOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `dsetstat2p(...)`.
+    Output object returned when calling `Dsetstat2pParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -73,7 +50,7 @@ def dsetstat2p_params(
     two_sided: bool = False,
     one_sided: bool = False,
     quiet: bool = False,
-) -> Dsetstat2pParameters:
+) -> Dsetstat2pParametersTagged:
     """
     Build parameters.
     
@@ -96,7 +73,7 @@ def dsetstat2p_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "dsetstat2p",
+        "@type": "afni/dsetstat2p",
         "dataset": dataset,
         "statval": statval,
         "bisided": bisided,
@@ -122,15 +99,15 @@ def dsetstat2p_cargs(
     """
     cargs = []
     cargs.append("dsetstat2p")
-    cargs.append(params.get("dataset"))
-    cargs.append(str(params.get("statval")))
-    if params.get("bisided"):
+    cargs.append(params.get("dataset", None))
+    cargs.append(str(params.get("statval", None)))
+    if params.get("bisided", False):
         cargs.append("-bisided")
-    if params.get("two_sided"):
+    if params.get("two_sided", False):
         cargs.append("-2sided")
-    if params.get("one_sided"):
+    if params.get("one_sided", False):
         cargs.append("-1sided")
-    if params.get("quiet"):
+    if params.get("quiet", False):
         cargs.append("-quiet")
     return cargs
 
@@ -157,9 +134,11 @@ def dsetstat2p_outputs(
 
 def dsetstat2p_execute(
     params: Dsetstat2pParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> Dsetstat2pOutputs:
     """
+    dsetstat2p
+    
     Converts a statistic to a p-value with reference to a particular dataset.
     
     Author: AFNI Developers
@@ -168,10 +147,12 @@ def dsetstat2p_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `Dsetstat2pOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(DSETSTAT2P_METADATA)
     params = execution.params(params)
     cargs = dsetstat2p_cargs(params, execution)
     ret = dsetstat2p_outputs(params, execution)
@@ -189,6 +170,8 @@ def dsetstat2p(
     runner: Runner | None = None,
 ) -> Dsetstat2pOutputs:
     """
+    dsetstat2p
+    
     Converts a statistic to a p-value with reference to a particular dataset.
     
     Author: AFNI Developers
@@ -214,8 +197,6 @@ def dsetstat2p(
     Returns:
         NamedTuple of outputs (described in `Dsetstat2pOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(DSETSTAT2P_METADATA)
     params = dsetstat2p_params(
         dataset=dataset,
         statval=statval,
@@ -224,13 +205,13 @@ def dsetstat2p(
         one_sided=one_sided,
         quiet=quiet,
     )
-    return dsetstat2p_execute(params, execution)
+    return dsetstat2p_execute(params, runner)
 
 
 __all__ = [
     "DSETSTAT2P_METADATA",
     "Dsetstat2pOutputs",
-    "Dsetstat2pParameters",
     "dsetstat2p",
+    "dsetstat2p_execute",
     "dsetstat2p_params",
 ]

niwrap_afni/afni/dtistudio_fiberto_segments.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 DTISTUDIO_FIBERTO_SEGMENTS_METADATA = Metadata(
-    id="7b645090f91e42ee064699f7e346fa9a87d9da30.boutiques",
+    id="153d8358c9e73a90c71c3f69eea088cdcd8f1746.boutiques",
     name="DTIStudioFibertoSegments",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,48 +14,22 @@ DTISTUDIO_FIBERTO_SEGMENTS_METADATA = Metadata(
 
 
 DtistudioFibertoSegmentsParameters = typing.TypedDict('DtistudioFibertoSegmentsParameters', {
-    "__STYXTYPE__": typing.Literal["DTIStudioFibertoSegments"],
+    "@type": typing.NotRequired[typing.Literal["afni/DTIStudioFibertoSegments"]],
+    "dataset": InputPathType,
+    "output_file": typing.NotRequired[str | None],
+    "swap_flag": bool,
+})
+DtistudioFibertoSegmentsParametersTagged = typing.TypedDict('DtistudioFibertoSegmentsParametersTagged', {
+    "@type": typing.Literal["afni/DTIStudioFibertoSegments"],
     "dataset": InputPathType,
     "output_file": typing.NotRequired[str | None],
     "swap_flag": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "DTIStudioFibertoSegments": dtistudio_fiberto_segments_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "DTIStudioFibertoSegments": dtistudio_fiberto_segments_outputs,
-    }.get(t)
 
 
 class DtistudioFibertoSegmentsOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `dtistudio_fiberto_segments(...)`.
+    Output object returned when calling `DtistudioFibertoSegmentsParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -67,7 +41,7 @@ def dtistudio_fiberto_segments_params(
     dataset: InputPathType,
     output_file: str | None = None,
     swap_flag: bool = False,
-) -> DtistudioFibertoSegmentsParameters:
+) -> DtistudioFibertoSegmentsParametersTagged:
     """
     Build parameters.
     
@@ -79,7 +53,7 @@ def dtistudio_fiberto_segments_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "DTIStudioFibertoSegments",
+        "@type": "afni/DTIStudioFibertoSegments",
         "dataset": dataset,
         "swap_flag": swap_flag,
     }
@@ -103,13 +77,13 @@ def dtistudio_fiberto_segments_cargs(
     """
     cargs = []
     cargs.append("DTIStudioFibertoSegments")
-    cargs.append(execution.input_file(params.get("dataset")))
-    if params.get("output_file") is not None:
+    cargs.append(execution.input_file(params.get("dataset", None)))
+    if params.get("output_file", None) is not None:
         cargs.extend([
             "-output",
-            params.get("output_file")
+            params.get("output_file", None)
         ])
-    if params.get("swap_flag"):
+    if params.get("swap_flag", False):
         cargs.append("-swap")
     return cargs
 
@@ -129,16 +103,18 @@ def dtistudio_fiberto_segments_outputs(
     """
     ret = DtistudioFibertoSegmentsOutputs(
         root=execution.output_file("."),
-        output_segment_file=execution.output_file(params.get("output_file")) if (params.get("output_file") is not None) else None,
+        output_segment_file=execution.output_file(params.get("output_file", None)) if (params.get("output_file") is not None) else None,
     )
     return ret
 
 
 def dtistudio_fiberto_segments_execute(
     params: DtistudioFibertoSegmentsParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> DtistudioFibertoSegmentsOutputs:
     """
+    DTIStudioFibertoSegments
+    
     Convert a DTIStudio Fiber file to a SUMA segment file.
     
     Author: AFNI Developers
@@ -147,10 +123,12 @@ def dtistudio_fiberto_segments_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `DtistudioFibertoSegmentsOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(DTISTUDIO_FIBERTO_SEGMENTS_METADATA)
     params = execution.params(params)
     cargs = dtistudio_fiberto_segments_cargs(params, execution)
     ret = dtistudio_fiberto_segments_outputs(params, execution)
@@ -165,6 +143,8 @@ def dtistudio_fiberto_segments(
     runner: Runner | None = None,
 ) -> DtistudioFibertoSegmentsOutputs:
     """
+    DTIStudioFibertoSegments
+    
     Convert a DTIStudio Fiber file to a SUMA segment file.
     
     Author: AFNI Developers
@@ -179,20 +159,18 @@ def dtistudio_fiberto_segments(
     Returns:
         NamedTuple of outputs (described in `DtistudioFibertoSegmentsOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(DTISTUDIO_FIBERTO_SEGMENTS_METADATA)
     params = dtistudio_fiberto_segments_params(
         dataset=dataset,
         output_file=output_file,
         swap_flag=swap_flag,
     )
-    return dtistudio_fiberto_segments_execute(params, execution)
+    return dtistudio_fiberto_segments_execute(params, runner)
 
 
 __all__ = [
     "DTISTUDIO_FIBERTO_SEGMENTS_METADATA",
     "DtistudioFibertoSegmentsOutputs",
-    "DtistudioFibertoSegmentsParameters",
     "dtistudio_fiberto_segments",
+    "dtistudio_fiberto_segments_execute",
     "dtistudio_fiberto_segments_params",
 ]