niwrap-afni 0.5.0__py3-none-any.whl

niwrap_afni/afni/get_afni_model_prf_6.py

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+# This file was auto generated by Styx.
+# Do not edit this file directly.
+
+import typing
+import pathlib
+from styxdefs import *
+
+GET_AFNI_MODEL_PRF_6_METADATA = Metadata(
+    id="a1644a25504c74d6961d86251212dfc9c7f6fb99.boutiques",
+    name="get_afni_model_PRF_6",
+    package="afni",
+    container_image_tag="afni/afni_make_build:AFNI_24.2.06",
+)
+
+
+GetAfniModelPrf6Parameters = typing.TypedDict('GetAfniModelPrf6Parameters', {
+    "__STYX_TYPE__": typing.Literal["get_afni_model_PRF_6"],
+    "NT": float,
+    "AMP": float,
+    "X": float,
+    "Y": float,
+    "SIGMA": float,
+    "SIGRAT": float,
+    "THETA": float,
+})
+
+
+def dyn_cargs(
+    t: str,
+) -> typing.Any:
+    """
+    Get build cargs function by command type.
+    
+    Args:
+        t: Command type.
+    Returns:
+        Build cargs function.
+    """
+    return {
+        "get_afni_model_PRF_6": get_afni_model_prf_6_cargs,
+    }.get(t)
+
+
+def dyn_outputs(
+    t: str,
+) -> typing.Any:
+    """
+    Get build outputs function by command type.
+    
+    Args:
+        t: Command type.
+    Returns:
+        Build outputs function.
+    """
+    return {
+    }.get(t)
+
+
+class GetAfniModelPrf6Outputs(typing.NamedTuple):
+    """
+    Output object returned when calling `get_afni_model_prf_6(...)`.
+    """
+    root: OutputPathType
+    """Output root folder. This is the root folder for all outputs."""
+
+
+def get_afni_model_prf_6_params(
+    nt_: float,
+    amp: float,
+    x: float,
+    y: float,
+    sigma: float,
+    sigrat: float,
+    theta: float,
+) -> GetAfniModelPrf6Parameters:
+    """
+    Build parameters.
+    
+    Args:
+        nt_: Number of time points of the stimulus dataset.
+        amp: Amplitude of the pRF model.
+        x: X coordinate of the pRF center.
+        y: Y coordinate of the pRF center.
+        sigma: Standard deviation of the Gaussian pRF.
+        sigrat: Ratio of standard deviations (sigma_x/sigma_y) of the Gaussian\
+            pRF.
+        theta: Rotation angle theta of the Gaussian pRF.
+    Returns:
+        Parameter dictionary
+    """
+    params = {
+        "__STYXTYPE__": "get_afni_model_PRF_6",
+        "NT": nt_,
+        "AMP": amp,
+        "X": x,
+        "Y": y,
+        "SIGMA": sigma,
+        "SIGRAT": sigrat,
+        "THETA": theta,
+    }
+    return params
+
+
+def get_afni_model_prf_6_cargs(
+    params: GetAfniModelPrf6Parameters,
+    execution: Execution,
+) -> list[str]:
+    """
+    Build command-line arguments from parameters.
+    
+    Args:
+        params: The parameters.
+        execution: The execution object for resolving input paths.
+    Returns:
+        Command-line arguments.
+    """
+    cargs = []
+    cargs.append("get_afni_model_PRF_6")
+    cargs.append(str(params.get("NT")))
+    cargs.append(str(params.get("AMP")))
+    cargs.append(str(params.get("X")))
+    cargs.append(str(params.get("Y")))
+    cargs.append(str(params.get("SIGMA")))
+    cargs.append(str(params.get("SIGRAT")))
+    cargs.append(str(params.get("THETA")))
+    return cargs
+
+
+def get_afni_model_prf_6_outputs(
+    params: GetAfniModelPrf6Parameters,
+    execution: Execution,
+) -> GetAfniModelPrf6Outputs:
+    """
+    Build outputs object containing output file paths and possibly stdout/stderr.
+    
+    Args:
+        params: The parameters.
+        execution: The execution object for resolving input paths.
+    Returns:
+        Outputs object.
+    """
+    ret = GetAfniModelPrf6Outputs(
+        root=execution.output_file("."),
+    )
+    return ret
+
+
+def get_afni_model_prf_6_execute(
+    params: GetAfniModelPrf6Parameters,
+    execution: Execution,
+) -> GetAfniModelPrf6Outputs:
+    """
+    A command to invoke AFNI's population receptive field (pRF) model.
+    
+    Author: AFNI Developers
+    
+    URL: https://afni.nimh.nih.gov/
+    
+    Args:
+        params: The parameters.
+        execution: The execution object.
+    Returns:
+        NamedTuple of outputs (described in `GetAfniModelPrf6Outputs`).
+    """
+    params = execution.params(params)
+    cargs = get_afni_model_prf_6_cargs(params, execution)
+    ret = get_afni_model_prf_6_outputs(params, execution)
+    execution.run(cargs)
+    return ret
+
+
+def get_afni_model_prf_6(
+    nt_: float,
+    amp: float,
+    x: float,
+    y: float,
+    sigma: float,
+    sigrat: float,
+    theta: float,
+    runner: Runner | None = None,
+) -> GetAfniModelPrf6Outputs:
+    """
+    A command to invoke AFNI's population receptive field (pRF) model.
+    
+    Author: AFNI Developers
+    
+    URL: https://afni.nimh.nih.gov/
+    
+    Args:
+        nt_: Number of time points of the stimulus dataset.
+        amp: Amplitude of the pRF model.
+        x: X coordinate of the pRF center.
+        y: Y coordinate of the pRF center.
+        sigma: Standard deviation of the Gaussian pRF.
+        sigrat: Ratio of standard deviations (sigma_x/sigma_y) of the Gaussian\
+            pRF.
+        theta: Rotation angle theta of the Gaussian pRF.
+        runner: Command runner.
+    Returns:
+        NamedTuple of outputs (described in `GetAfniModelPrf6Outputs`).
+    """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(GET_AFNI_MODEL_PRF_6_METADATA)
+    params = get_afni_model_prf_6_params(
+        nt_=nt_,
+        amp=amp,
+        x=x,
+        y=y,
+        sigma=sigma,
+        sigrat=sigrat,
+        theta=theta,
+    )
+    return get_afni_model_prf_6_execute(params, execution)
+
+
+__all__ = [
+    "GET_AFNI_MODEL_PRF_6_METADATA",
+    "GetAfniModelPrf6Outputs",
+    "GetAfniModelPrf6Parameters",
+    "get_afni_model_prf_6",
+    "get_afni_model_prf_6_params",
+]

niwrap_afni/afni/get_afni_model_prf_6_bad.py

@@ -0,0 +1,212 @@
+# This file was auto generated by Styx.
+# Do not edit this file directly.
+
+import typing
+import pathlib
+from styxdefs import *
+
+GET_AFNI_MODEL_PRF_6_BAD_METADATA = Metadata(
+    id="f7614b8ced72773ab9bfd46ff569ff9a092b84e3.boutiques",
+    name="get_afni_model_PRF_6_BAD",
+    package="afni",
+    container_image_tag="afni/afni_make_build:AFNI_24.2.06",
+)
+
+
+GetAfniModelPrf6BadParameters = typing.TypedDict('GetAfniModelPrf6BadParameters', {
+    "__STYX_TYPE__": typing.Literal["get_afni_model_PRF_6_BAD"],
+    "amplitude": float,
+    "x_coord": float,
+    "y_coord": float,
+    "sigma": float,
+    "sigrat": float,
+    "theta": float,
+})
+
+
+def dyn_cargs(
+    t: str,
+) -> typing.Any:
+    """
+    Get build cargs function by command type.
+    
+    Args:
+        t: Command type.
+    Returns:
+        Build cargs function.
+    """
+    return {
+        "get_afni_model_PRF_6_BAD": get_afni_model_prf_6_bad_cargs,
+    }.get(t)
+
+
+def dyn_outputs(
+    t: str,
+) -> typing.Any:
+    """
+    Get build outputs function by command type.
+    
+    Args:
+        t: Command type.
+    Returns:
+        Build outputs function.
+    """
+    return {
+    }.get(t)
+
+
+class GetAfniModelPrf6BadOutputs(typing.NamedTuple):
+    """
+    Output object returned when calling `get_afni_model_prf_6_bad(...)`.
+    """
+    root: OutputPathType
+    """Output root folder. This is the root folder for all outputs."""
+
+
+def get_afni_model_prf_6_bad_params(
+    amplitude: float,
+    x_coord: float,
+    y_coord: float,
+    sigma: float,
+    sigrat: float,
+    theta: float,
+) -> GetAfniModelPrf6BadParameters:
+    """
+    Build parameters.
+    
+    Args:
+        amplitude: Amplitude parameter A.
+        x_coord: X coordinate parameter x.
+        y_coord: Y coordinate parameter y.
+        sigma: Sigma parameter sigma.
+        sigrat: Sigma ratio parameter sigrat.
+        theta: Theta parameter theta (in radians).
+    Returns:
+        Parameter dictionary
+    """
+    params = {
+        "__STYXTYPE__": "get_afni_model_PRF_6_BAD",
+        "amplitude": amplitude,
+        "x_coord": x_coord,
+        "y_coord": y_coord,
+        "sigma": sigma,
+        "sigrat": sigrat,
+        "theta": theta,
+    }
+    return params
+
+
+def get_afni_model_prf_6_bad_cargs(
+    params: GetAfniModelPrf6BadParameters,
+    execution: Execution,
+) -> list[str]:
+    """
+    Build command-line arguments from parameters.
+    
+    Args:
+        params: The parameters.
+        execution: The execution object for resolving input paths.
+    Returns:
+        Command-line arguments.
+    """
+    cargs = []
+    cargs.append("get_afni_model_PRF_6_BAD")
+    cargs.append(str(params.get("amplitude")))
+    cargs.append(str(params.get("x_coord")))
+    cargs.append(str(params.get("y_coord")))
+    cargs.append(str(params.get("sigma")))
+    cargs.append(str(params.get("sigrat")))
+    cargs.append(str(params.get("theta")))
+    return cargs
+
+
+def get_afni_model_prf_6_bad_outputs(
+    params: GetAfniModelPrf6BadParameters,
+    execution: Execution,
+) -> GetAfniModelPrf6BadOutputs:
+    """
+    Build outputs object containing output file paths and possibly stdout/stderr.
+    
+    Args:
+        params: The parameters.
+        execution: The execution object for resolving input paths.
+    Returns:
+        Outputs object.
+    """
+    ret = GetAfniModelPrf6BadOutputs(
+        root=execution.output_file("."),
+    )
+    return ret
+
+
+def get_afni_model_prf_6_bad_execute(
+    params: GetAfniModelPrf6BadParameters,
+    execution: Execution,
+) -> GetAfniModelPrf6BadOutputs:
+    """
+    Command line tool for obtaining AFNI pRF model.
+    
+    Author: AFNI Developers
+    
+    URL: https://afni.nimh.nih.gov/
+    
+    Args:
+        params: The parameters.
+        execution: The execution object.
+    Returns:
+        NamedTuple of outputs (described in `GetAfniModelPrf6BadOutputs`).
+    """
+    params = execution.params(params)
+    cargs = get_afni_model_prf_6_bad_cargs(params, execution)
+    ret = get_afni_model_prf_6_bad_outputs(params, execution)
+    execution.run(cargs)
+    return ret
+
+
+def get_afni_model_prf_6_bad(
+    amplitude: float,
+    x_coord: float,
+    y_coord: float,
+    sigma: float,
+    sigrat: float,
+    theta: float,
+    runner: Runner | None = None,
+) -> GetAfniModelPrf6BadOutputs:
+    """
+    Command line tool for obtaining AFNI pRF model.
+    
+    Author: AFNI Developers
+    
+    URL: https://afni.nimh.nih.gov/
+    
+    Args:
+        amplitude: Amplitude parameter A.
+        x_coord: X coordinate parameter x.
+        y_coord: Y coordinate parameter y.
+        sigma: Sigma parameter sigma.
+        sigrat: Sigma ratio parameter sigrat.
+        theta: Theta parameter theta (in radians).
+        runner: Command runner.
+    Returns:
+        NamedTuple of outputs (described in `GetAfniModelPrf6BadOutputs`).
+    """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(GET_AFNI_MODEL_PRF_6_BAD_METADATA)
+    params = get_afni_model_prf_6_bad_params(
+        amplitude=amplitude,
+        x_coord=x_coord,
+        y_coord=y_coord,
+        sigma=sigma,
+        sigrat=sigrat,
+        theta=theta,
+    )
+    return get_afni_model_prf_6_bad_execute(params, execution)
+
+
+__all__ = [
+    "GET_AFNI_MODEL_PRF_6_BAD_METADATA",
+    "GetAfniModelPrf6BadOutputs",
+    "GetAfniModelPrf6BadParameters",
+    "get_afni_model_prf_6_bad",
+    "get_afni_model_prf_6_bad_params",
+]