niwrap-afni 0.5.0__py3-none-any.whl

niwrap_afni/afni/__init__.py

@@ -0,0 +1,582 @@
+"""
+AFNI
+
+AFNI (Analysis of Functional NeuroImages) is a leading software suite of C,
+Python, R programs and shell scripts primarily developed for the analysis and
+display of multiple MRI modalities: anatomical, functional MRI (FMRI) and
+diffusion weighted (DW) data. It is freely available (both as open source code
+and as precompiled binaries) for research purposes. The software is made to run
+on virtually any Unix system with X11 and Motif displays. Binary packages are
+provided for MacOS and Linux systems such as Fedora, CentOS/Red Hat and Ubuntu
+(which includes the Windows Subsystem for Linux).
+
+URL: https://afni.nimh.nih.gov/
+"""
+# This file was auto generated by Styx.
+# Do not edit this file directly.
+
+from .abids_json_info_py import *
+from .abids_json_tool_py import *
+from .abids_tool import *
+from .adjunct_apqc_tsnr_general import *
+from .adjunct_aw_tableize_roi_info_py import *
+from .adjunct_calc_mont_dims_py import *
+from .adjunct_combine_str_py import *
+from .adjunct_is_label_py import *
+from .adjunct_make_script_and_rst_py import *
+from .adjunct_select_str_py import *
+from .adjunct_simplify_cost import *
+from .adjunct_suma_fs_mask_and_qc import *
+from .adjunct_suma_fs_roi_info import *
+from .adjunct_tort_plot_dp_align import *
+from .adwarp import *
+from .afni import *
+from .afni_batch_r import *
+from .afni_check_omp import *
+from .afni_history import *
+from .afni_open import *
+from .afni_proc_py import *
+from .afni_run_r import *
+from .afni_system_check_py import *
+from .aiv import *
+from .align_epi_anat import *
+from .analyze_trace import *
+from .ap_run_simple_rest import *
+from .apqc_make_html import *
+from .apqc_make_tcsh_py import *
+from .apsearch import *
+from .auto_warp_py import *
+from .balloon import *
+from .bayes_view import *
+from .bayesian_group_ana_py import *
+from .brain_skin import *
+from .build_afni_py import *
+from .cat_matvec import *
+from .ccalc import *
+from .cifti_tool import *
+from .cjpeg import *
+from .clust_exp_hist_table_py import *
+from .clust_exp_stat_parse_py import *
+from .column_cat import *
+from .compare_surfaces import *
+from .convert_cdiflist_to_grads import *
+from .convert_dset import *
+from .convert_surface import *
+from .convex_hull import *
+from .count import *
+from .create_icosahedron import *
+from .dcm2niix_afni import *
+from .dicom_hdr import *
+from .dicom_hinfo import *
+from .dicom_to_raw import *
+from .dimon import *
+from .djpeg import *
+from .drive_suma import *
+from .dsetstat2p import *
+from .dtistudio_fiberto_segments import *
+from .epi_b0_correct import *
+from .examine_xmat import *
+from .fat_mat2d_plot_py import *
+from .fat_mat_sel_py import *
+from .fat_mat_tableize import *
+from .fat_mvm_gridconv_py import *
+from .fat_mvm_prep import *
+from .fat_mvm_scripter_py import *
+from .fat_proc_align_anat_pair import *
+from .fat_proc_axialize_anat import *
+from .fat_proc_connec_vis import *
+from .fat_proc_convert_dcm_anat import *
+from .fat_proc_convert_dcm_dwis import *
+from .fat_proc_decmap import *
+from .fat_proc_dwi_to_dt import *
+from .fat_proc_filter_dwis import *
+from .fat_proc_imit2w_from_t1w import *
+from .fat_proc_map_to_dti import *
+from .fat_proc_select_vols import *
+from .fat_roi_row import *
+from .fatcat_matplot import *
+from .fdrval import *
+from .fftest import *
+from .file_tool import *
+from .fim2 import *
+from .find_variance_lines import *
+from .firdesign import *
+from .float_scan import *
+from .from3d import *
+from .fsread_annot import *
+from .gen_epi_review_py import *
+from .gen_group_command import *
+from .gen_ss_review_scripts import *
+from .gen_ss_review_table_py import *
+from .get_afni_model_prf import *
+from .get_afni_model_prf_6 import *
+from .get_afni_model_prf_6_bad import *
+from .gifti_tool import *
+from .gltsymtest import *
+from .help_format import *
+from .im2niml import *
+from .images_equal import *
+from .imand import *
+from .imaver import *
+from .imcalc import *
+from .imcat import *
+from .imcutup import *
+from .imdump import *
+from .immask import *
+from .imreg import *
+from .imrotate import *
+from .imstack import *
+from .imstat import *
+from .imupsam import *
+from .init_user_dotfiles_py import *
+from .inspec import *
+from .iso_surface import *
+from .make_color_map import *
+from .make_pq_script_py import *
+from .make_random_timing_py import *
+from .make_stim_times_py import *
+from .map_icosahedron import *
+from .map_track_id import *
+from .mba import *
+from .meica_py import *
+from .myget import *
+from .neuro_deconvolve_py import *
+from .nicat import *
+from .niccc import *
+from .nifti_tool import *
+from .niml_feedme import *
+from .nsize import *
+from .p2dsetstat import *
+from .parse_fs_lt_log_py import *
+from .plugout_drive import *
+from .plugout_ijk import *
+from .plugout_tt import *
+from .plugout_tta import *
+from .prompt_popup import *
+from .prompt_user import *
+from .pta import *
+from .qdelaunay import *
+from .qhull import *
+from .quick_alpha_vals_py import *
+from .quickspec import *
+from .quickspec_sl import *
+from .quotize import *
+from .r_pkgs_install import *
+from .rba import *
+from .rbox import *
+from .read_matlab_files_py import *
+from .realtime_receiver import *
+from .retro_ts_py import *
+from .rmz import *
+from .roi2dataset import *
+from .roigrow import *
+from .rotcom import *
+from .rsfgen import *
+from .rtfeedme import *
+from .samp_bias import *
+from .scale_to_map import *
+from .serial_helper import *
+from .sfim import *
+from .slow_surf_clustsim_py import *
+from .spharm_deco import *
+from .spharm_reco import *
+from .stimband import *
+from .strblast import *
+from .suma_change_spec import *
+from .suma_glxdino import *
+from .surf2_vol_coord import *
+from .surf_clust import *
+from .surf_dist import *
+from .surf_dset_info import *
+from .surf_extrema import *
+from .surf_fwhm import *
+from .surf_info import *
+from .surf_layers import *
+from .surf_localstat import *
+from .surf_measures import *
+from .surf_mesh import *
+from .surf_patch import *
+from .surf_qual import *
+from .surf_retino_map import *
+from .surf_smooth import *
+from .surf_to_surf import *
+from .surface_metrics import *
+from .tedana_wrapper_py import *
+from .tfim import *
+from .timing_tool_py import *
+from .to3d import *
+from .tokens import *
+from .trr import *
+from .uber_align_test_py import *
+from .uber_proc_py import *
+from .uber_skel import *
+from .uber_subject_py import *
+from .un_warp_epi_py import *
+from .uniq_images import *
+from .v_1d_apar2mat import *
+from .v_1d_astrip import *
+from .v_1d_bandpass import *
+from .v_1d_bport import *
+from .v_1d_correlate import *
+from .v_1d_dw_grad_o_mat__ import *
+from .v_1d_flag_motion import *
+from .v_1d_marry import *
+from .v_1d_nlfit import *
+from .v_1d_rplot import *
+from .v_1d_sem import *
+from .v_1d_tool_py import *
+from .v_1d_tsort import *
+from .v_1d_upsample import *
+from .v_1dcat import *
+from .v_1ddot import *
+from .v_1deval import *
+from .v_1dfft import *
+from .v_1dgen_arma11 import *
+from .v_1dgrayplot import *
+from .v_1dmatcalc import *
+from .v_1dnorm import *
+from .v_1dplot import *
+from .v_1dplot_py import *
+from .v_1dsound import *
+from .v_1dsum import *
+from .v_1dsvd import *
+from .v_1dtranspose import *
+from .v_24swap import *
+from .v_2d_im_reg import *
+from .v_2dcat import *
+from .v_2perm import *
+from .v_2swap import *
+from .v_3_droimaker import *
+from .v_3d_aboverlap import *
+from .v_3d_acost import *
+from .v_3d_afnito3_d import *
+from .v_3d_afnito_analyze import *
+from .v_3d_afnito_nifti import *
+from .v_3d_afnito_niml import *
+from .v_3d_afnito_raw import *
+from .v_3d_allineate import *
+from .v_3d_amp_to_rsfc import *
+from .v_3d_anhist import *
+from .v_3d_anova import *
+from .v_3d_anova2 import *
+from .v_3d_anova3 import *
+from .v_3d_attribute import *
+from .v_3d_auto_tcorrelate import *
+from .v_3d_autobox import *
+from .v_3d_automask import *
+from .v_3d_ball_match import *
+from .v_3d_bandpass import *
+from .v_3d_blur_in_mask import *
+from .v_3d_blur_to_fwhm import *
+from .v_3d_brain_sync import *
+from .v_3d_brain_voyagerto_afni import *
+from .v_3d_brick_stat import *
+from .v_3d_clip_level import *
+from .v_3d_clust_count import *
+from .v_3d_clust_sim import *
+from .v_3d_clusterize import *
+from .v_3d_cm import *
+from .v_3d_compare_affine import *
+from .v_3d_conformist import *
+from .v_3d_convolve import *
+from .v_3d_cruiseto_afni import *
+from .v_3d_deconvolve import *
+from .v_3d_degree_centrality import *
+from .v_3d_depth_map import *
+from .v_3d_despike import *
+from .v_3d_detrend import *
+from .v_3d_dft import *
+from .v_3d_diff import *
+from .v_3d_dteig import *
+from .v_3d_dtto_dwi import *
+from .v_3d_dtto_noisy_dwi import *
+from .v_3d_dwito_dt import *
+from .v_3d_dwuncert import *
+from .v_3d_ecm import *
+from .v_3d_edu_01_scale import *
+from .v_3d_eigs_to_dt import *
+from .v_3d_empty import *
+from .v_3d_entropy import *
+from .v_3d_errts_cormat import *
+from .v_3d_exchange import *
+from .v_3d_extract_group_in_corr import *
+from .v_3d_extrema import *
+from .v_3d_fdr import *
+from .v_3d_fft import *
+from .v_3d_friedman import *
+from .v_3d_fwhmx import *
+from .v_3d_gen_feature_dist import *
+from .v_3d_gen_priors import *
+from .v_3d_getrow import *
+from .v_3d_grayplot import *
+from .v_3d_group_in_corr import *
+from .v_3d_hist import *
+from .v_3d_icc import *
+from .v_3d_intracranial import *
+from .v_3d_inv_fmri import *
+from .v_3d_isc import *
+from .v_3d_kruskal_wallis import *
+from .v_3d_lfcd import *
+from .v_3d_lme import *
+from .v_3d_lmer import *
+from .v_3d_local_acf import *
+from .v_3d_local_bistat import *
+from .v_3d_local_histog import *
+from .v_3d_local_pv import *
+from .v_3d_local_svd import *
+from .v_3d_local_unifize import *
+from .v_3d_localstat import *
+from .v_3d_lomb_scargle import *
+from .v_3d_lrflip import *
+from .v_3d_lss import *
+from .v_3d_mann_whitney import *
+from .v_3d_mask_to_ascii import *
+from .v_3d_match import *
+from .v_3d_mean import *
+from .v_3d_median_filter import *
+from .v_3d_mema import *
+from .v_3d_mepfm import *
+from .v_3d_mse import *
+from .v_3d_mss import *
+from .v_3d_multi_thresh import *
+from .v_3d_mvm import *
+from .v_3d_mvm_validator import *
+from .v_3d_net_corr import *
+from .v_3d_nlfim import *
+from .v_3d_normality_test import *
+from .v_3d_notes import *
+from .v_3d_nwarp_adjust import *
+from .v_3d_nwarp_apply import *
+from .v_3d_nwarp_cat import *
+from .v_3d_nwarp_funcs import *
+from .v_3d_nwarp_xyz import *
+from .v_3d_overlap import *
+from .v_3d_par2_afni import *
+from .v_3d_periodogram import *
+from .v_3d_pfm import *
+from .v_3d_polyfit import *
+from .v_3d_pval import *
+from .v_3d_pvmap import *
+from .v_3d_qwarp import *
+from .v_3d_rank import *
+from .v_3d_rankizer import *
+from .v_3d_re_ho import *
+from .v_3d_reg_ana import *
+from .v_3d_remlfit import *
+from .v_3d_retino_phase import *
+from .v_3d_roistats import *
+from .v_3d_row_fillin import *
+from .v_3d_rprog_demo import *
+from .v_3d_rsfc import *
+from .v_3d_seg import *
+from .v_3d_setup_group_in_corr import *
+from .v_3d_sharpen import *
+from .v_3d_signatures import *
+from .v_3d_skull_strip import *
+from .v_3d_slice_ndice import *
+from .v_3d_space_time_corr import *
+from .v_3d_spat_norm import *
+from .v_3d_stat_clust import *
+from .v_3d_surf2_vol import *
+from .v_3d_surf_mask import *
+from .v_3d_synthesize import *
+from .v_3d_tagalign import *
+from .v_3d_tcat import *
+from .v_3d_tcorr1_d import *
+from .v_3d_tcorr_map import *
+from .v_3d_tcorrelate import *
+from .v_3d_tfilter import *
+from .v_3d_tfitter import *
+from .v_3d_threeto_rgb import *
+from .v_3d_tnorm import *
+from .v_3d_tortoiseto_here import *
+from .v_3d_toutcount import *
+from .v_3d_toy_prog import *
+from .v_3d_tproject import *
+from .v_3d_tqual import *
+from .v_3d_track_id import *
+from .v_3d_trfix import *
+from .v_3d_tsgen import *
+from .v_3d_tshift import *
+from .v_3d_tsmooth import *
+from .v_3d_tsort import *
+from .v_3d_tsplit4_d import *
+from .v_3d_tstat import *
+from .v_3d_tto1_d import *
+from .v_3d_twoto_complex import *
+from .v_3d_undump import *
+from .v_3d_unifize import *
+from .v_3d_upsample import *
+from .v_3d_vec_rgb_to_hsl import *
+from .v_3d_vol2_surf import *
+from .v_3d_warp import *
+from .v_3d_warp_drive import *
+from .v_3d_wilcoxon import *
+from .v_3d_winsor import *
+from .v_3d_xclust_sim import *
+from .v_3d_xyzcat import *
+from .v_3d_zcat import *
+from .v_3d_zcutup import *
+from .v_3d_zeropad import *
+from .v_3d_zipper_zapper import *
+from .v_3d_zregrid import *
+from .v_3danisosmooth import *
+from .v_3daxialize import *
+from .v_3dbucket import *
+from .v_3dcalc import *
+from .v_3dclust import *
+from .v_3dcopy import *
+from .v_3ddelay import *
+from .v_3ddot import *
+from .v_3ddot_beta import *
+from .v_3dedge3 import *
+from .v_3dedgedog import *
+from .v_3dfim_ import *
+from .v_3dfractionize import *
+from .v_3dhistog import *
+from .v_3dinfill import *
+from .v_3dinfo import *
+from .v_3dkmeans import *
+from .v_3dmask_svd import *
+from .v_3dmask_tool import *
+from .v_3dmaskave import *
+from .v_3dmaskdump import *
+from .v_3dmatcalc import *
+from .v_3dmatmult import *
+from .v_3dmaxdisp import *
+from .v_3dmaxima import *
+from .v_3dmerge import *
+from .v_3dnewid import *
+from .v_3dnvals import *
+from .v_3dpc import *
+from .v_3drefit import *
+from .v_3drename import *
+from .v_3dresample import *
+from .v_3dretroicor import *
+from .v_3drotate import *
+from .v_3dsvm import *
+from .v_3dsvm_linpredict import *
+from .v_3dto_xdataset import *
+from .v_3dttest__ import *
+from .v_3dvolreg import *
+from .v_4swap import *
+from .v__1d_diff_mag import *
+from .v__2dwarper import *
+from .v__2dwarper_allin import *
+from .v__4_daverage import *
+from .v__add_edge import *
+from .v__afni_env import *
+from .v__afni_orient2_raimap import *
+from .v__afni_orient_sign import *
+from .v__afni_r_package_install import *
+from .v__afni_refacer_make_master import *
+from .v__afni_refacer_make_onebig_a12 import *
+from .v__afni_refacer_run import *
+from .v__afni_run_me import *
+from .v__align_centers import *
+from .v__align_partial_oblique import *
+from .v__anaticor import *
+from .v__animal_warper import *
+from .v__atlasize import *
+from .v__auto_tlrc import *
+from .v__build_afni_xlib import *
+from .v__center_distance import *
+from .v__chauffeur_afni import *
+from .v__check_for_afni_dset import *
+from .v__clip_volume import *
+from .v__clust_exp_cat_lab import *
+from .v__clust_exp_run_shiny import *
+from .v__command_globb import *
+from .v__compute_gcor import *
+from .v__compute_oc_weights import *
+from .v__deblank_file_names import *
+from .v__demo_prompt import *
+from .v__dice_metric import *
+from .v__diff_files import *
+from .v__diff_tree import *
+from .v__djunct_4d_imager import *
+from .v__djunct_4d_slices_to_3d_vol import *
+from .v__djunct_anonymize import *
+from .v__djunct_dwi_selector import *
+from .v__djunct_edgy_align_check import *
+from .v__djunct_modal_smoothing_with_rep import *
+from .v__djunct_montage_coordinator import *
+from .v__djunct_overlap_check import *
+from .v__djunct_ssw_intermed_edge_imgs import *
+from .v__do_examples import *
+from .v__electro_grid import *
+from .v__examine_gen_feat_dists import *
+from .v__extract_meica_ortvec import *
+from .v__fast_roi import *
+from .v__fat_tract_colorize import *
+from .v__find_afni_dset_path import *
+from .v__fix_fssphere import *
+from .v__float_fix import *
+from .v__from_rai import *
+from .v__fs_roi_label import *
+from .v__fslabel2dset import *
+from .v__get_afni_dims import *
+from .v__get_afni_id import *
+from .v__get_afni_orient import *
+from .v__get_afni_prefix import *
+from .v__get_afni_res import *
+from .v__get_afni_version import *
+from .v__get_afni_view import *
+from .v__grad_flip_test import *
+from .v__grayplot import *
+from .v__help_afni import *
+from .v__is_oblique import *
+from .v__iso_masks import *
+from .v__make_label_table import *
+from .v__make_plug_diff import *
+from .v__measure_bb_thick import *
+from .v__measure_erosion_thick import *
+from .v__measure_in2out import *
+from .v__move_to_series_dirs import *
+from .v__no_ext import *
+from .v__no_pound import *
+from .v__noisy_skull_strip import *
+from .v__np import *
+from .v__parse_afni_name import *
+from .v__purify_1_d import *
+from .v__quiet_talkers import *
+from .v__radial_correlate import *
+from .v__rename_panga import *
+from .v__reorder import *
+from .v__retino_proc import *
+from .v__roi_corr_mat import *
+from .v__roi_decluster import *
+from .v__roi_modal_grow import *
+from .v__scale_volume import *
+from .v__script_check import *
+from .v__shift_volume import *
+from .v__show_dynamic_range import *
+from .v__simulate_motion import *
+from .v__skull_strip_touch_up import *
+from .v__snapshot_volreg import *
+from .v__spharm_examples import *
+from .v__sswarper import *
+from .v__statauxcode import *
+from .v__suma_acknowledge import *
+from .v__suma_align_to_experiment import *
+from .v__suma_fsvol_to_brik import *
+from .v__suma_make_spec_caret import *
+from .v__suma_make_spec_fs import *
+from .v__suma_make_spec_sf import *
+from .v__suma_renumber_fs import *
+from .v__suma_reprefixize_spec import *
+from .v__surf_smooth_heat_07_examples import *
+from .v__surf_to_vol_spackle import *
+from .v__t1scale import *
+from .v__thickness_master import *
+from .v__time_diff import *
+from .v__to_mni_awarp import *
+from .v__to_mni_qwarpar import *
+from .v__to_rai import *
+from .v__update_afni_binaries import *
+from .v__vol_center import *
+from .v__xyz_to_ijk import *
+from .vecwarp import *
+from .waver import *
+from .whirlgif import *
+from .xmat_tool_py import *