niwrap-afni 0.5.0__py3-none-any.whl

niwrap_afni/afni/v_3d_track_id.py

@@ -0,0 +1,628 @@
+# This file was auto generated by Styx.
+# Do not edit this file directly.
+
+import typing
+import pathlib
+from styxdefs import *
+
+V_3D_TRACK_ID_METADATA = Metadata(
+    id="8ab0520e610553f06eae7348796632b2a5eda40e.boutiques",
+    name="3dTrackID",
+    package="afni",
+    container_image_tag="afni/afni_make_build:AFNI_24.2.06",
+)
+
+
+V3dTrackIdParameters = typing.TypedDict('V3dTrackIdParameters', {
+    "__STYX_TYPE__": typing.Literal["3dTrackID"],
+    "mode": typing.Literal["DET", "MINIP", "PROB"],
+    "netrois": InputPathType,
+    "prefix": str,
+    "dti_in": typing.NotRequired[str | None],
+    "dti_list": typing.NotRequired[InputPathType | None],
+    "dti_extra": typing.NotRequired[str | None],
+    "dti_search_no": bool,
+    "hardi_gfa": typing.NotRequired[InputPathType | None],
+    "hardi_dirs": typing.NotRequired[InputPathType | None],
+    "hardi_pars": typing.NotRequired[str | None],
+    "mask": typing.NotRequired[InputPathType | None],
+    "thru_mask": typing.NotRequired[InputPathType | None],
+    "targ_surf_stop": bool,
+    "targ_surf_twixt": bool,
+    "logic": typing.Literal["OR", "AND"],
+    "mini_num": typing.NotRequired[float | None],
+    "uncert": typing.NotRequired[InputPathType | None],
+    "unc_min_fa": typing.NotRequired[float | None],
+    "unc_min_v": typing.NotRequired[float | None],
+    "algopt": typing.NotRequired[InputPathType | None],
+    "alg_thresh_fa": typing.NotRequired[float | None],
+    "alg_thresh_ang": typing.NotRequired[float | None],
+    "alg_thresh_len": typing.NotRequired[float | None],
+    "alg_nseed_x": typing.NotRequired[float | None],
+    "alg_nseed_y": typing.NotRequired[float | None],
+    "alg_nseed_z": typing.NotRequired[float | None],
+    "alg_thresh_frac": typing.NotRequired[float | None],
+    "alg_nseed_vox": typing.NotRequired[float | None],
+    "alg_nmonte": typing.NotRequired[float | None],
+    "extra_tr_par": bool,
+    "uncut_at_rois": bool,
+    "dump_rois": typing.NotRequired[typing.Literal["DUMP", "AFNI", "BOTH", "AFNI_MAP"] | None],
+    "dump_no_labtab": bool,
+    "dump_lab_consec": bool,
+    "posteriori": bool,
+    "rec_orig": bool,
+    "do_trk_out": bool,
+    "trk_opp_orient": bool,
+    "nifti": bool,
+    "no_indipair_out": bool,
+    "write_rois": bool,
+    "write_opts": bool,
+    "pair_out_power": bool,
+    "verb": typing.NotRequired[float | None],
+})
+
+
+def dyn_cargs(
+    t: str,
+) -> typing.Any:
+    """
+    Get build cargs function by command type.
+    
+    Args:
+        t: Command type.
+    Returns:
+        Build cargs function.
+    """
+    return {
+        "3dTrackID": v_3d_track_id_cargs,
+    }.get(t)
+
+
+def dyn_outputs(
+    t: str,
+) -> typing.Any:
+    """
+    Get build outputs function by command type.
+    
+    Args:
+        t: Command type.
+    Returns:
+        Build outputs function.
+    """
+    return {
+        "3dTrackID": v_3d_track_id_outputs,
+    }.get(t)
+
+
+class V3dTrackIdOutputs(typing.NamedTuple):
+    """
+    Output object returned when calling `v_3d_track_id(...)`.
+    """
+    root: OutputPathType
+    """Output root folder. This is the root folder for all outputs."""
+    indimap: OutputPathType
+    """Output of INDIMAP"""
+    pairmap: OutputPathType
+    """Output of PAIRMAP"""
+    grid: OutputPathType
+    """Text file output of statistics of WM-ROIs"""
+    niml_tract: OutputPathType
+    """Track-like output for viewing in SUMA"""
+    niml_dset: OutputPathType
+    """Dataset output for use with *.niml.tract"""
+    trk: OutputPathType
+    """TrackVis-like output for viewing in TrackVis"""
+    pairmap_labeltable: OutputPathType
+    """Output of PAIRMAP labeltable"""
+    roi_labels: OutputPathType
+    """Output file of all ROI labels"""
+    option_values: OutputPathType
+    """Output of all option values"""
+
+
+def v_3d_track_id_params(
+    mode: typing.Literal["DET", "MINIP", "PROB"],
+    netrois: InputPathType,
+    prefix: str,
+    logic: typing.Literal["OR", "AND"],
+    dti_in: str | None = None,
+    dti_list: InputPathType | None = None,
+    dti_extra: str | None = None,
+    dti_search_no: bool = False,
+    hardi_gfa: InputPathType | None = None,
+    hardi_dirs: InputPathType | None = None,
+    hardi_pars: str | None = None,
+    mask: InputPathType | None = None,
+    thru_mask: InputPathType | None = None,
+    targ_surf_stop: bool = False,
+    targ_surf_twixt: bool = False,
+    mini_num: float | None = None,
+    uncert: InputPathType | None = None,
+    unc_min_fa: float | None = None,
+    unc_min_v: float | None = None,
+    algopt: InputPathType | None = None,
+    alg_thresh_fa: float | None = None,
+    alg_thresh_ang: float | None = None,
+    alg_thresh_len: float | None = None,
+    alg_nseed_x: float | None = None,
+    alg_nseed_y: float | None = None,
+    alg_nseed_z: float | None = None,
+    alg_thresh_frac: float | None = None,
+    alg_nseed_vox: float | None = None,
+    alg_nmonte: float | None = None,
+    extra_tr_par: bool = False,
+    uncut_at_rois: bool = False,
+    dump_rois: typing.Literal["DUMP", "AFNI", "BOTH", "AFNI_MAP"] | None = None,
+    dump_no_labtab: bool = False,
+    dump_lab_consec: bool = False,
+    posteriori: bool = False,
+    rec_orig: bool = False,
+    do_trk_out: bool = False,
+    trk_opp_orient: bool = False,
+    nifti: bool = False,
+    no_indipair_out: bool = False,
+    write_rois: bool = False,
+    write_opts: bool = False,
+    pair_out_power: bool = False,
+    verb: float | None = None,
+) -> V3dTrackIdParameters:
+    """
+    Build parameters.
+    
+    Args:
+        mode: The mode of tracking: DET, MINIP, or PROB.
+        netrois: Network ROI mask(s).
+        prefix: Prefix for output files.
+        logic: Control logic connections among target ROIs per network.
+        dti_in: Input DTI volumes basename.
+        dti_list: Alternative way to specify DTI input files, a NIML-formatted\
+            text file.
+        dti_extra: Option for extra scalar for WM skeleton thresholding.
+        dti_search_no: Turn off automatic search for additional scalar files to\
+            include in output.
+        hardi_gfa: Single brik dataset with generalized FA (GFA) info.
+        hardi_dirs: Directions file for HARDI data containing directions\
+            components.
+        hardi_pars: Prefix to search for scalar files naming format.
+        mask: Mask within which tracking is done. Optional but highly\
+            recommended.
+        thru_mask: Extra restrictor mask through which paths are strictly\
+            required to pass.
+        targ_surf_stop: Make tracts stop at outer surfaces of the target ROIs.
+        targ_surf_twixt: Make tracts stop just before entering target surfaces.
+        mini_num: Number of whole brain Monte Carlo iterations for\
+            mini-probabilistic tracking.
+        uncert: Uncertainty values file.
+        unc_min_fa: Minimum stdev for perturbing FA.
+        unc_min_v: Minimum stdev for perturbing direction-vectors.
+        algopt: Specify tracking parameter quantities file in ASCII.
+        alg_thresh_fa: Set threshold for FA map or other WM proxy.
+        alg_thresh_ang: Set maximum angle for turning during propagation.
+        alg_thresh_len: Set minimum physical length of tracts to keep.
+        alg_nseed_x: Number of seeds per voxel in x-direction.
+        alg_nseed_y: Number of seeds per voxel in y-direction.
+        alg_nseed_z: Number of seeds per voxel in z-direction.
+        alg_thresh_frac: Value for thresholding the fraction of tracks through\
+            a voxel for a given connection.
+        alg_nseed_vox: Number of seeds per voxel per Monte Carlo iteration.
+        alg_nmonte: Number of Monte Carlo iterations.
+        extra_tr_par: Run three extra track parameter scalings for each\
+            connection.
+        uncut_at_rois: Keep entire track even if overshoots a target.
+        dump_rois: Output individual masks of ROI connections.
+        dump_no_labtab: Turn off label table use in ROI dump output.
+        dump_lab_consec: DON'T apply numerical labels of original ROIs in dump\
+            output.
+        posteriori: Output individual files with number of tracks per voxel per\
+            pair.
+        rec_orig: Record dataset origin in header of *.trk file.
+        do_trk_out: Output *.trk files for viewing in TrackVis.
+        trk_opp_orient: Oppositize voxel_order for TRK files.
+        nifti: Output files in *.nii.gz format.
+        no_indipair_out: Do not output INDIMAP and PAIRMAP volumes.
+        write_rois: Write out ROI labels.
+        write_opts: Write out all option values.
+        pair_out_power: Switch to use powers of two labelling for PAIRMAP.
+        verb: Set verbosity level.
+    Returns:
+        Parameter dictionary
+    """
+    params = {
+        "__STYXTYPE__": "3dTrackID",
+        "mode": mode,
+        "netrois": netrois,
+        "prefix": prefix,
+        "dti_search_no": dti_search_no,
+        "targ_surf_stop": targ_surf_stop,
+        "targ_surf_twixt": targ_surf_twixt,
+        "logic": logic,
+        "extra_tr_par": extra_tr_par,
+        "uncut_at_rois": uncut_at_rois,
+        "dump_no_labtab": dump_no_labtab,
+        "dump_lab_consec": dump_lab_consec,
+        "posteriori": posteriori,
+        "rec_orig": rec_orig,
+        "do_trk_out": do_trk_out,
+        "trk_opp_orient": trk_opp_orient,
+        "nifti": nifti,
+        "no_indipair_out": no_indipair_out,
+        "write_rois": write_rois,
+        "write_opts": write_opts,
+        "pair_out_power": pair_out_power,
+    }
+    if dti_in is not None:
+        params["dti_in"] = dti_in
+    if dti_list is not None:
+        params["dti_list"] = dti_list
+    if dti_extra is not None:
+        params["dti_extra"] = dti_extra
+    if hardi_gfa is not None:
+        params["hardi_gfa"] = hardi_gfa
+    if hardi_dirs is not None:
+        params["hardi_dirs"] = hardi_dirs
+    if hardi_pars is not None:
+        params["hardi_pars"] = hardi_pars
+    if mask is not None:
+        params["mask"] = mask
+    if thru_mask is not None:
+        params["thru_mask"] = thru_mask
+    if mini_num is not None:
+        params["mini_num"] = mini_num
+    if uncert is not None:
+        params["uncert"] = uncert
+    if unc_min_fa is not None:
+        params["unc_min_fa"] = unc_min_fa
+    if unc_min_v is not None:
+        params["unc_min_v"] = unc_min_v
+    if algopt is not None:
+        params["algopt"] = algopt
+    if alg_thresh_fa is not None:
+        params["alg_thresh_fa"] = alg_thresh_fa
+    if alg_thresh_ang is not None:
+        params["alg_thresh_ang"] = alg_thresh_ang
+    if alg_thresh_len is not None:
+        params["alg_thresh_len"] = alg_thresh_len
+    if alg_nseed_x is not None:
+        params["alg_nseed_x"] = alg_nseed_x
+    if alg_nseed_y is not None:
+        params["alg_nseed_y"] = alg_nseed_y
+    if alg_nseed_z is not None:
+        params["alg_nseed_z"] = alg_nseed_z
+    if alg_thresh_frac is not None:
+        params["alg_thresh_frac"] = alg_thresh_frac
+    if alg_nseed_vox is not None:
+        params["alg_nseed_vox"] = alg_nseed_vox
+    if alg_nmonte is not None:
+        params["alg_nmonte"] = alg_nmonte
+    if dump_rois is not None:
+        params["dump_rois"] = dump_rois
+    if verb is not None:
+        params["verb"] = verb
+    return params
+
+
+def v_3d_track_id_cargs(
+    params: V3dTrackIdParameters,
+    execution: Execution,
+) -> list[str]:
+    """
+    Build command-line arguments from parameters.
+    
+    Args:
+        params: The parameters.
+        execution: The execution object for resolving input paths.
+    Returns:
+        Command-line arguments.
+    """
+    cargs = []
+    cargs.append("3dTrackID")
+    cargs.append(params.get("mode"))
+    cargs.append(execution.input_file(params.get("netrois")))
+    cargs.append(params.get("prefix"))
+    if params.get("dti_in") is not None:
+        cargs.append(params.get("dti_in"))
+    if params.get("dti_list") is not None:
+        cargs.append(execution.input_file(params.get("dti_list")))
+    if params.get("dti_extra") is not None:
+        cargs.append(params.get("dti_extra"))
+    if params.get("dti_search_no"):
+        cargs.append("-dti_search_NO")
+    if params.get("hardi_gfa") is not None:
+        cargs.append(execution.input_file(params.get("hardi_gfa")))
+    if params.get("hardi_dirs") is not None:
+        cargs.append(execution.input_file(params.get("hardi_dirs")))
+    if params.get("hardi_pars") is not None:
+        cargs.append(params.get("hardi_pars"))
+    if params.get("mask") is not None:
+        cargs.append(execution.input_file(params.get("mask")))
+    if params.get("thru_mask") is not None:
+        cargs.append(execution.input_file(params.get("thru_mask")))
+    if params.get("targ_surf_stop"):
+        cargs.append("-targ_surf_stop")
+    if params.get("targ_surf_twixt"):
+        cargs.append("-targ_surf_twixt")
+    cargs.append(params.get("logic"))
+    if params.get("mini_num") is not None:
+        cargs.append(str(params.get("mini_num")))
+    if params.get("uncert") is not None:
+        cargs.append(execution.input_file(params.get("uncert")))
+    if params.get("unc_min_fa") is not None:
+        cargs.append(str(params.get("unc_min_fa")))
+    if params.get("unc_min_v") is not None:
+        cargs.append(str(params.get("unc_min_v")))
+    if params.get("algopt") is not None:
+        cargs.append(execution.input_file(params.get("algopt")))
+    if params.get("alg_thresh_fa") is not None:
+        cargs.append(str(params.get("alg_thresh_fa")))
+    if params.get("alg_thresh_ang") is not None:
+        cargs.append(str(params.get("alg_thresh_ang")))
+    if params.get("alg_thresh_len") is not None:
+        cargs.append(str(params.get("alg_thresh_len")))
+    if params.get("alg_nseed_x") is not None:
+        cargs.append(str(params.get("alg_nseed_x")))
+    if params.get("alg_nseed_y") is not None:
+        cargs.append(str(params.get("alg_nseed_y")))
+    if params.get("alg_nseed_z") is not None:
+        cargs.append(str(params.get("alg_nseed_z")))
+    if params.get("alg_thresh_frac") is not None:
+        cargs.append(str(params.get("alg_thresh_frac")))
+    if params.get("alg_nseed_vox") is not None:
+        cargs.append(str(params.get("alg_nseed_vox")))
+    if params.get("alg_nmonte") is not None:
+        cargs.append(str(params.get("alg_nmonte")))
+    if params.get("extra_tr_par"):
+        cargs.append("-extra_tr_par")
+    if params.get("uncut_at_rois"):
+        cargs.append("-uncut_at_rois")
+    if params.get("dump_rois") is not None:
+        cargs.append(params.get("dump_rois"))
+    if params.get("dump_no_labtab"):
+        cargs.append("-dump_no_labtab")
+    if params.get("dump_lab_consec"):
+        cargs.append("-dump_lab_consec")
+    if params.get("posteriori"):
+        cargs.append("-posteriori")
+    if params.get("rec_orig"):
+        cargs.append("-rec_orig")
+    if params.get("do_trk_out"):
+        cargs.append("-do_trk_out")
+    if params.get("trk_opp_orient"):
+        cargs.append("-trk_opp_orient")
+    if params.get("nifti"):
+        cargs.append("-nifti")
+    if params.get("no_indipair_out"):
+        cargs.append("-no_indipair_out")
+    if params.get("write_rois"):
+        cargs.append("-write_rois")
+    if params.get("write_opts"):
+        cargs.append("-write_opts")
+    if params.get("pair_out_power"):
+        cargs.append("-pair_out_power")
+    if params.get("verb") is not None:
+        cargs.append(str(params.get("verb")))
+    return cargs
+
+
+def v_3d_track_id_outputs(
+    params: V3dTrackIdParameters,
+    execution: Execution,
+) -> V3dTrackIdOutputs:
+    """
+    Build outputs object containing output file paths and possibly stdout/stderr.
+    
+    Args:
+        params: The parameters.
+        execution: The execution object for resolving input paths.
+    Returns:
+        Outputs object.
+    """
+    ret = V3dTrackIdOutputs(
+        root=execution.output_file("."),
+        indimap=execution.output_file(params.get("prefix") + "_INDIMAP.nii.gz"),
+        pairmap=execution.output_file(params.get("prefix") + "_PAIRMAP.nii.gz"),
+        grid=execution.output_file(params.get("prefix") + ".grid"),
+        niml_tract=execution.output_file(params.get("prefix") + ".niml.tract"),
+        niml_dset=execution.output_file(params.get("prefix") + ".niml.dset"),
+        trk=execution.output_file(params.get("prefix") + ".trk"),
+        pairmap_labeltable=execution.output_file(params.get("prefix") + "_PAIRS.niml.lt"),
+        roi_labels=execution.output_file(params.get("prefix") + "_roi.labs"),
+        option_values=execution.output_file(params.get("prefix") + ".niml.opts"),
+    )
+    return ret
+
+
+def v_3d_track_id_execute(
+    params: V3dTrackIdParameters,
+    execution: Execution,
+) -> V3dTrackIdOutputs:
+    """
+    FACTID-based tractography code for AFNI, part of FATCAT.
+    
+    Author: AFNI Developers
+    
+    URL: https://afni.nimh.nih.gov/
+    
+    Args:
+        params: The parameters.
+        execution: The execution object.
+    Returns:
+        NamedTuple of outputs (described in `V3dTrackIdOutputs`).
+    """
+    params = execution.params(params)
+    cargs = v_3d_track_id_cargs(params, execution)
+    ret = v_3d_track_id_outputs(params, execution)
+    execution.run(cargs)
+    return ret
+
+
+def v_3d_track_id(
+    mode: typing.Literal["DET", "MINIP", "PROB"],
+    netrois: InputPathType,
+    prefix: str,
+    logic: typing.Literal["OR", "AND"],
+    dti_in: str | None = None,
+    dti_list: InputPathType | None = None,
+    dti_extra: str | None = None,
+    dti_search_no: bool = False,
+    hardi_gfa: InputPathType | None = None,
+    hardi_dirs: InputPathType | None = None,
+    hardi_pars: str | None = None,
+    mask: InputPathType | None = None,
+    thru_mask: InputPathType | None = None,
+    targ_surf_stop: bool = False,
+    targ_surf_twixt: bool = False,
+    mini_num: float | None = None,
+    uncert: InputPathType | None = None,
+    unc_min_fa: float | None = None,
+    unc_min_v: float | None = None,
+    algopt: InputPathType | None = None,
+    alg_thresh_fa: float | None = None,
+    alg_thresh_ang: float | None = None,
+    alg_thresh_len: float | None = None,
+    alg_nseed_x: float | None = None,
+    alg_nseed_y: float | None = None,
+    alg_nseed_z: float | None = None,
+    alg_thresh_frac: float | None = None,
+    alg_nseed_vox: float | None = None,
+    alg_nmonte: float | None = None,
+    extra_tr_par: bool = False,
+    uncut_at_rois: bool = False,
+    dump_rois: typing.Literal["DUMP", "AFNI", "BOTH", "AFNI_MAP"] | None = None,
+    dump_no_labtab: bool = False,
+    dump_lab_consec: bool = False,
+    posteriori: bool = False,
+    rec_orig: bool = False,
+    do_trk_out: bool = False,
+    trk_opp_orient: bool = False,
+    nifti: bool = False,
+    no_indipair_out: bool = False,
+    write_rois: bool = False,
+    write_opts: bool = False,
+    pair_out_power: bool = False,
+    verb: float | None = None,
+    runner: Runner | None = None,
+) -> V3dTrackIdOutputs:
+    """
+    FACTID-based tractography code for AFNI, part of FATCAT.
+    
+    Author: AFNI Developers
+    
+    URL: https://afni.nimh.nih.gov/
+    
+    Args:
+        mode: The mode of tracking: DET, MINIP, or PROB.
+        netrois: Network ROI mask(s).
+        prefix: Prefix for output files.
+        logic: Control logic connections among target ROIs per network.
+        dti_in: Input DTI volumes basename.
+        dti_list: Alternative way to specify DTI input files, a NIML-formatted\
+            text file.
+        dti_extra: Option for extra scalar for WM skeleton thresholding.
+        dti_search_no: Turn off automatic search for additional scalar files to\
+            include in output.
+        hardi_gfa: Single brik dataset with generalized FA (GFA) info.
+        hardi_dirs: Directions file for HARDI data containing directions\
+            components.
+        hardi_pars: Prefix to search for scalar files naming format.
+        mask: Mask within which tracking is done. Optional but highly\
+            recommended.
+        thru_mask: Extra restrictor mask through which paths are strictly\
+            required to pass.
+        targ_surf_stop: Make tracts stop at outer surfaces of the target ROIs.
+        targ_surf_twixt: Make tracts stop just before entering target surfaces.
+        mini_num: Number of whole brain Monte Carlo iterations for\
+            mini-probabilistic tracking.
+        uncert: Uncertainty values file.
+        unc_min_fa: Minimum stdev for perturbing FA.
+        unc_min_v: Minimum stdev for perturbing direction-vectors.
+        algopt: Specify tracking parameter quantities file in ASCII.
+        alg_thresh_fa: Set threshold for FA map or other WM proxy.
+        alg_thresh_ang: Set maximum angle for turning during propagation.
+        alg_thresh_len: Set minimum physical length of tracts to keep.
+        alg_nseed_x: Number of seeds per voxel in x-direction.
+        alg_nseed_y: Number of seeds per voxel in y-direction.
+        alg_nseed_z: Number of seeds per voxel in z-direction.
+        alg_thresh_frac: Value for thresholding the fraction of tracks through\
+            a voxel for a given connection.
+        alg_nseed_vox: Number of seeds per voxel per Monte Carlo iteration.
+        alg_nmonte: Number of Monte Carlo iterations.
+        extra_tr_par: Run three extra track parameter scalings for each\
+            connection.
+        uncut_at_rois: Keep entire track even if overshoots a target.
+        dump_rois: Output individual masks of ROI connections.
+        dump_no_labtab: Turn off label table use in ROI dump output.
+        dump_lab_consec: DON'T apply numerical labels of original ROIs in dump\
+            output.
+        posteriori: Output individual files with number of tracks per voxel per\
+            pair.
+        rec_orig: Record dataset origin in header of *.trk file.
+        do_trk_out: Output *.trk files for viewing in TrackVis.
+        trk_opp_orient: Oppositize voxel_order for TRK files.
+        nifti: Output files in *.nii.gz format.
+        no_indipair_out: Do not output INDIMAP and PAIRMAP volumes.
+        write_rois: Write out ROI labels.
+        write_opts: Write out all option values.
+        pair_out_power: Switch to use powers of two labelling for PAIRMAP.
+        verb: Set verbosity level.
+        runner: Command runner.
+    Returns:
+        NamedTuple of outputs (described in `V3dTrackIdOutputs`).
+    """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V_3D_TRACK_ID_METADATA)
+    params = v_3d_track_id_params(
+        mode=mode,
+        netrois=netrois,
+        prefix=prefix,
+        dti_in=dti_in,
+        dti_list=dti_list,
+        dti_extra=dti_extra,
+        dti_search_no=dti_search_no,
+        hardi_gfa=hardi_gfa,
+        hardi_dirs=hardi_dirs,
+        hardi_pars=hardi_pars,
+        mask=mask,
+        thru_mask=thru_mask,
+        targ_surf_stop=targ_surf_stop,
+        targ_surf_twixt=targ_surf_twixt,
+        logic=logic,
+        mini_num=mini_num,
+        uncert=uncert,
+        unc_min_fa=unc_min_fa,
+        unc_min_v=unc_min_v,
+        algopt=algopt,
+        alg_thresh_fa=alg_thresh_fa,
+        alg_thresh_ang=alg_thresh_ang,
+        alg_thresh_len=alg_thresh_len,
+        alg_nseed_x=alg_nseed_x,
+        alg_nseed_y=alg_nseed_y,
+        alg_nseed_z=alg_nseed_z,
+        alg_thresh_frac=alg_thresh_frac,
+        alg_nseed_vox=alg_nseed_vox,
+        alg_nmonte=alg_nmonte,
+        extra_tr_par=extra_tr_par,
+        uncut_at_rois=uncut_at_rois,
+        dump_rois=dump_rois,
+        dump_no_labtab=dump_no_labtab,
+        dump_lab_consec=dump_lab_consec,
+        posteriori=posteriori,
+        rec_orig=rec_orig,
+        do_trk_out=do_trk_out,
+        trk_opp_orient=trk_opp_orient,
+        nifti=nifti,
+        no_indipair_out=no_indipair_out,
+        write_rois=write_rois,
+        write_opts=write_opts,
+        pair_out_power=pair_out_power,
+        verb=verb,
+    )
+    return v_3d_track_id_execute(params, execution)
+
+
+__all__ = [
+    "V3dTrackIdOutputs",
+    "V3dTrackIdParameters",
+    "V_3D_TRACK_ID_METADATA",
+    "v_3d_track_id",
+    "v_3d_track_id_params",
+]