niwrap-afni 0.5.0__py3-none-any.whl
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- niwrap_afni/afni/__init__.py +582 -0
- niwrap_afni/afni/abids_json_info_py.py +247 -0
- niwrap_afni/afni/abids_json_tool_py.py +212 -0
- niwrap_afni/afni/abids_tool.py +191 -0
- niwrap_afni/afni/adjunct_apqc_tsnr_general.py +447 -0
- niwrap_afni/afni/adjunct_aw_tableize_roi_info_py.py +224 -0
- niwrap_afni/afni/adjunct_calc_mont_dims_py.py +173 -0
- niwrap_afni/afni/adjunct_combine_str_py.py +198 -0
- niwrap_afni/afni/adjunct_is_label_py.py +180 -0
- niwrap_afni/afni/adjunct_make_script_and_rst_py.py +237 -0
- niwrap_afni/afni/adjunct_select_str_py.py +188 -0
- niwrap_afni/afni/adjunct_simplify_cost.py +172 -0
- niwrap_afni/afni/adjunct_suma_fs_mask_and_qc.py +249 -0
- niwrap_afni/afni/adjunct_suma_fs_roi_info.py +228 -0
- niwrap_afni/afni/adjunct_tort_plot_dp_align.py +248 -0
- niwrap_afni/afni/adwarp.py +296 -0
- niwrap_afni/afni/afni.py +428 -0
- niwrap_afni/afni/afni_batch_r.py +215 -0
- niwrap_afni/afni/afni_check_omp.py +174 -0
- niwrap_afni/afni/afni_history.py +413 -0
- niwrap_afni/afni/afni_open.py +304 -0
- niwrap_afni/afni/afni_proc_py.py +283 -0
- niwrap_afni/afni/afni_run_r.py +180 -0
- niwrap_afni/afni/afni_system_check_py.py +274 -0
- niwrap_afni/afni/aiv.py +231 -0
- niwrap_afni/afni/align_epi_anat.py +356 -0
- niwrap_afni/afni/analyze_trace.py +292 -0
- niwrap_afni/afni/ap_run_simple_rest.py +293 -0
- niwrap_afni/afni/apqc_make_html.py +175 -0
- niwrap_afni/afni/apqc_make_tcsh_py.py +245 -0
- niwrap_afni/afni/apsearch.py +195 -0
- niwrap_afni/afni/auto_warp_py.py +527 -0
- niwrap_afni/afni/balloon.py +210 -0
- niwrap_afni/afni/bayes_view.py +196 -0
- niwrap_afni/afni/bayesian_group_ana_py.py +342 -0
- niwrap_afni/afni/brain_skin.py +358 -0
- niwrap_afni/afni/build_afni_py.py +330 -0
- niwrap_afni/afni/cat_matvec.py +185 -0
- niwrap_afni/afni/ccalc.py +192 -0
- niwrap_afni/afni/cifti_tool.py +271 -0
- niwrap_afni/afni/cjpeg.py +233 -0
- niwrap_afni/afni/clust_exp_hist_table_py.py +218 -0
- niwrap_afni/afni/clust_exp_stat_parse_py.py +346 -0
- niwrap_afni/afni/column_cat.py +208 -0
- niwrap_afni/afni/compare_surfaces.py +344 -0
- niwrap_afni/afni/convert_cdiflist_to_grads.py +251 -0
- niwrap_afni/afni/convert_dset.py +421 -0
- niwrap_afni/afni/convert_surface.py +247 -0
- niwrap_afni/afni/convex_hull.py +386 -0
- niwrap_afni/afni/count.py +327 -0
- niwrap_afni/afni/create_icosahedron.py +282 -0
- niwrap_afni/afni/dcm2niix_afni.py +550 -0
- niwrap_afni/afni/dicom_hdr.py +263 -0
- niwrap_afni/afni/dicom_hinfo.py +220 -0
- niwrap_afni/afni/dicom_to_raw.py +176 -0
- niwrap_afni/afni/dimon.py +286 -0
- niwrap_afni/afni/djpeg.py +233 -0
- niwrap_afni/afni/drive_suma.py +520 -0
- niwrap_afni/afni/dsetstat2p.py +218 -0
- niwrap_afni/afni/dtistudio_fiberto_segments.py +198 -0
- niwrap_afni/afni/epi_b0_correct.py +485 -0
- niwrap_afni/afni/examine_xmat.py +280 -0
- niwrap_afni/afni/fat_mat2d_plot_py.py +428 -0
- niwrap_afni/afni/fat_mat_sel_py.py +469 -0
- niwrap_afni/afni/fat_mat_tableize.py +292 -0
- niwrap_afni/afni/fat_mvm_gridconv_py.py +207 -0
- niwrap_afni/afni/fat_mvm_prep.py +256 -0
- niwrap_afni/afni/fat_mvm_scripter_py.py +353 -0
- niwrap_afni/afni/fat_proc_align_anat_pair.py +307 -0
- niwrap_afni/afni/fat_proc_axialize_anat.py +415 -0
- niwrap_afni/afni/fat_proc_connec_vis.py +346 -0
- niwrap_afni/afni/fat_proc_convert_dcm_anat.py +283 -0
- niwrap_afni/afni/fat_proc_convert_dcm_dwis.py +374 -0
- niwrap_afni/afni/fat_proc_decmap.py +321 -0
- niwrap_afni/afni/fat_proc_dwi_to_dt.py +522 -0
- niwrap_afni/afni/fat_proc_filter_dwis.py +321 -0
- niwrap_afni/afni/fat_proc_imit2w_from_t1w.py +283 -0
- niwrap_afni/afni/fat_proc_map_to_dti.py +308 -0
- niwrap_afni/afni/fat_proc_select_vols.py +266 -0
- niwrap_afni/afni/fat_roi_row.py +233 -0
- niwrap_afni/afni/fatcat_matplot.py +181 -0
- niwrap_afni/afni/fdrval.py +241 -0
- niwrap_afni/afni/fftest.py +197 -0
- niwrap_afni/afni/file_tool.py +580 -0
- niwrap_afni/afni/fim2.py +465 -0
- niwrap_afni/afni/find_variance_lines.py +353 -0
- niwrap_afni/afni/firdesign.py +235 -0
- niwrap_afni/afni/float_scan.py +213 -0
- niwrap_afni/afni/from3d.py +292 -0
- niwrap_afni/afni/fsread_annot.py +322 -0
- niwrap_afni/afni/gen_epi_review_py.py +292 -0
- niwrap_afni/afni/gen_group_command.py +324 -0
- niwrap_afni/afni/gen_ss_review_scripts.py +421 -0
- niwrap_afni/afni/gen_ss_review_table_py.py +324 -0
- niwrap_afni/afni/get_afni_model_prf.py +196 -0
- niwrap_afni/afni/get_afni_model_prf_6.py +222 -0
- niwrap_afni/afni/get_afni_model_prf_6_bad.py +212 -0
- niwrap_afni/afni/gifti_tool.py +426 -0
- niwrap_afni/afni/gltsymtest.py +193 -0
- niwrap_afni/afni/help_format.py +176 -0
- niwrap_afni/afni/im2niml.py +178 -0
- niwrap_afni/afni/images_equal.py +195 -0
- niwrap_afni/afni/imand.py +203 -0
- niwrap_afni/afni/imaver.py +201 -0
- niwrap_afni/afni/imcalc.py +235 -0
- niwrap_afni/afni/imcat.py +498 -0
- niwrap_afni/afni/imcutup.py +241 -0
- niwrap_afni/afni/imdump.py +177 -0
- niwrap_afni/afni/immask.py +223 -0
- niwrap_afni/afni/imreg.py +389 -0
- niwrap_afni/afni/imrotate.py +217 -0
- niwrap_afni/afni/imstack.py +209 -0
- niwrap_afni/afni/imstat.py +217 -0
- niwrap_afni/afni/imupsam.py +205 -0
- niwrap_afni/afni/init_user_dotfiles_py.py +353 -0
- niwrap_afni/afni/inspec.py +255 -0
- niwrap_afni/afni/iso_surface.py +344 -0
- niwrap_afni/afni/make_color_map.py +417 -0
- niwrap_afni/afni/make_pq_script_py.py +200 -0
- niwrap_afni/afni/make_random_timing_py.py +471 -0
- niwrap_afni/afni/make_stim_times_py.py +304 -0
- niwrap_afni/afni/map_icosahedron.py +296 -0
- niwrap_afni/afni/map_track_id.py +254 -0
- niwrap_afni/afni/mba.py +360 -0
- niwrap_afni/afni/meica_py.py +259 -0
- niwrap_afni/afni/myget.py +186 -0
- niwrap_afni/afni/neuro_deconvolve_py.py +291 -0
- niwrap_afni/afni/nicat.py +207 -0
- niwrap_afni/afni/niccc.py +307 -0
- niwrap_afni/afni/nifti_tool.py +310 -0
- niwrap_afni/afni/niml_feedme.py +260 -0
- niwrap_afni/afni/nsize.py +184 -0
- niwrap_afni/afni/p2dsetstat.py +216 -0
- niwrap_afni/afni/parse_fs_lt_log_py.py +217 -0
- niwrap_afni/afni/plugout_drive.py +259 -0
- niwrap_afni/afni/plugout_ijk.py +297 -0
- niwrap_afni/afni/plugout_tt.py +326 -0
- niwrap_afni/afni/plugout_tta.py +290 -0
- niwrap_afni/afni/prompt_popup.py +205 -0
- niwrap_afni/afni/prompt_user.py +190 -0
- niwrap_afni/afni/pta.py +279 -0
- niwrap_afni/afni/qdelaunay.py +534 -0
- niwrap_afni/afni/qhull.py +376 -0
- niwrap_afni/afni/quick_alpha_vals_py.py +189 -0
- niwrap_afni/afni/quickspec.py +259 -0
- niwrap_afni/afni/quickspec_sl.py +282 -0
- niwrap_afni/afni/quotize.py +194 -0
- niwrap_afni/afni/r_pkgs_install.py +227 -0
- niwrap_afni/afni/rba.py +508 -0
- niwrap_afni/afni/rbox.py +245 -0
- niwrap_afni/afni/read_matlab_files_py.py +225 -0
- niwrap_afni/afni/realtime_receiver.py +310 -0
- niwrap_afni/afni/retro_ts_py.py +477 -0
- niwrap_afni/afni/rmz.py +203 -0
- niwrap_afni/afni/roi2dataset.py +310 -0
- niwrap_afni/afni/roigrow.py +276 -0
- niwrap_afni/afni/rotcom.py +190 -0
- niwrap_afni/afni/rsfgen.py +330 -0
- niwrap_afni/afni/rtfeedme.py +308 -0
- niwrap_afni/afni/samp_bias.py +245 -0
- niwrap_afni/afni/scale_to_map.py +481 -0
- niwrap_afni/afni/serial_helper.py +298 -0
- niwrap_afni/afni/sfim.py +229 -0
- niwrap_afni/afni/slow_surf_clustsim_py.py +285 -0
- niwrap_afni/afni/spharm_deco.py +284 -0
- niwrap_afni/afni/spharm_reco.py +274 -0
- niwrap_afni/afni/stimband.py +229 -0
- niwrap_afni/afni/strblast.py +239 -0
- niwrap_afni/afni/suma_change_spec.py +225 -0
- niwrap_afni/afni/suma_glxdino.py +175 -0
- niwrap_afni/afni/surf2_vol_coord.py +305 -0
- niwrap_afni/afni/surf_clust.py +611 -0
- niwrap_afni/afni/surf_dist.py +208 -0
- niwrap_afni/afni/surf_dset_info.py +355 -0
- niwrap_afni/afni/surf_extrema.py +279 -0
- niwrap_afni/afni/surf_fwhm.py +350 -0
- niwrap_afni/afni/surf_info.py +288 -0
- niwrap_afni/afni/surf_layers.py +300 -0
- niwrap_afni/afni/surf_localstat.py +242 -0
- niwrap_afni/afni/surf_measures.py +373 -0
- niwrap_afni/afni/surf_mesh.py +256 -0
- niwrap_afni/afni/surf_patch.py +412 -0
- niwrap_afni/afni/surf_qual.py +250 -0
- niwrap_afni/afni/surf_retino_map.py +225 -0
- niwrap_afni/afni/surf_smooth.py +388 -0
- niwrap_afni/afni/surf_to_surf.py +327 -0
- niwrap_afni/afni/surface_metrics.py +377 -0
- niwrap_afni/afni/tedana_wrapper_py.py +306 -0
- niwrap_afni/afni/tfim.py +267 -0
- niwrap_afni/afni/timing_tool_py.py +406 -0
- niwrap_afni/afni/to3d.py +643 -0
- niwrap_afni/afni/tokens.py +192 -0
- niwrap_afni/afni/trr.py +405 -0
- niwrap_afni/afni/uber_align_test_py.py +266 -0
- niwrap_afni/afni/uber_proc_py.py +176 -0
- niwrap_afni/afni/uber_skel.py +277 -0
- niwrap_afni/afni/uber_subject_py.py +707 -0
- niwrap_afni/afni/un_warp_epi_py.py +232 -0
- niwrap_afni/afni/uniq_images.py +180 -0
- niwrap_afni/afni/v_1d_apar2mat.py +262 -0
- niwrap_afni/afni/v_1d_astrip.py +176 -0
- niwrap_afni/afni/v_1d_bandpass.py +238 -0
- niwrap_afni/afni/v_1d_bport.py +277 -0
- niwrap_afni/afni/v_1d_correlate.py +218 -0
- niwrap_afni/afni/v_1d_dw_grad_o_mat__.py +429 -0
- niwrap_afni/afni/v_1d_flag_motion.py +212 -0
- niwrap_afni/afni/v_1d_marry.py +214 -0
- niwrap_afni/afni/v_1d_nlfit.py +254 -0
- niwrap_afni/afni/v_1d_rplot.py +180 -0
- niwrap_afni/afni/v_1d_sem.py +215 -0
- niwrap_afni/afni/v_1d_tool_py.py +319 -0
- niwrap_afni/afni/v_1d_tsort.py +216 -0
- niwrap_afni/afni/v_1d_upsample.py +195 -0
- niwrap_afni/afni/v_1dcat.py +266 -0
- niwrap_afni/afni/v_1ddot.py +249 -0
- niwrap_afni/afni/v_1deval.py +265 -0
- niwrap_afni/afni/v_1dfft.py +269 -0
- niwrap_afni/afni/v_1dgen_arma11.py +319 -0
- niwrap_afni/afni/v_1dgrayplot.py +238 -0
- niwrap_afni/afni/v_1dmatcalc.py +180 -0
- niwrap_afni/afni/v_1dnorm.py +224 -0
- niwrap_afni/afni/v_1dplot.py +831 -0
- niwrap_afni/afni/v_1dplot_py.py +578 -0
- niwrap_afni/afni/v_1dsound.py +292 -0
- niwrap_afni/afni/v_1dsum.py +235 -0
- niwrap_afni/afni/v_1dsvd.py +272 -0
- niwrap_afni/afni/v_1dtranspose.py +188 -0
- niwrap_afni/afni/v_24swap.py +194 -0
- niwrap_afni/afni/v_2d_im_reg.py +312 -0
- niwrap_afni/afni/v_2dcat.py +496 -0
- niwrap_afni/afni/v_2perm.py +233 -0
- niwrap_afni/afni/v_2swap.py +181 -0
- niwrap_afni/afni/v_3_droimaker.py +419 -0
- niwrap_afni/afni/v_3d_aboverlap.py +211 -0
- niwrap_afni/afni/v_3d_acost.py +210 -0
- niwrap_afni/afni/v_3d_afnito3_d.py +177 -0
- niwrap_afni/afni/v_3d_afnito_analyze.py +219 -0
- niwrap_afni/afni/v_3d_afnito_nifti.py +245 -0
- niwrap_afni/afni/v_3d_afnito_niml.py +175 -0
- niwrap_afni/afni/v_3d_afnito_raw.py +202 -0
- niwrap_afni/afni/v_3d_allineate.py +350 -0
- niwrap_afni/afni/v_3d_amp_to_rsfc.py +262 -0
- niwrap_afni/afni/v_3d_anhist.py +260 -0
- niwrap_afni/afni/v_3d_anova.py +359 -0
- niwrap_afni/afni/v_3d_anova2.py +515 -0
- niwrap_afni/afni/v_3d_anova3.py +302 -0
- niwrap_afni/afni/v_3d_attribute.py +248 -0
- niwrap_afni/afni/v_3d_auto_tcorrelate.py +314 -0
- niwrap_afni/afni/v_3d_autobox.py +335 -0
- niwrap_afni/afni/v_3d_automask.py +258 -0
- niwrap_afni/afni/v_3d_ball_match.py +229 -0
- niwrap_afni/afni/v_3d_bandpass.py +381 -0
- niwrap_afni/afni/v_3d_blur_in_mask.py +291 -0
- niwrap_afni/afni/v_3d_blur_to_fwhm.py +267 -0
- niwrap_afni/afni/v_3d_brain_sync.py +267 -0
- niwrap_afni/afni/v_3d_brain_voyagerto_afni.py +313 -0
- niwrap_afni/afni/v_3d_brick_stat.py +463 -0
- niwrap_afni/afni/v_3d_clip_level.py +175 -0
- niwrap_afni/afni/v_3d_clust_count.py +229 -0
- niwrap_afni/afni/v_3d_clust_sim.py +196 -0
- niwrap_afni/afni/v_3d_clusterize.py +448 -0
- niwrap_afni/afni/v_3d_cm.py +177 -0
- niwrap_afni/afni/v_3d_compare_affine.py +215 -0
- niwrap_afni/afni/v_3d_conformist.py +176 -0
- niwrap_afni/afni/v_3d_convolve.py +197 -0
- niwrap_afni/afni/v_3d_cruiseto_afni.py +264 -0
- niwrap_afni/afni/v_3d_deconvolve.py +371 -0
- niwrap_afni/afni/v_3d_degree_centrality.py +270 -0
- niwrap_afni/afni/v_3d_depth_map.py +317 -0
- niwrap_afni/afni/v_3d_despike.py +191 -0
- niwrap_afni/afni/v_3d_detrend.py +191 -0
- niwrap_afni/afni/v_3d_dft.py +245 -0
- niwrap_afni/afni/v_3d_diff.py +254 -0
- niwrap_afni/afni/v_3d_dteig.py +236 -0
- niwrap_afni/afni/v_3d_dtto_dwi.py +199 -0
- niwrap_afni/afni/v_3d_dtto_noisy_dwi.py +275 -0
- niwrap_afni/afni/v_3d_dwito_dt.py +191 -0
- niwrap_afni/afni/v_3d_dwuncert.py +283 -0
- niwrap_afni/afni/v_3d_ecm.py +363 -0
- niwrap_afni/afni/v_3d_edu_01_scale.py +216 -0
- niwrap_afni/afni/v_3d_eigs_to_dt.py +271 -0
- niwrap_afni/afni/v_3d_empty.py +224 -0
- niwrap_afni/afni/v_3d_entropy.py +181 -0
- niwrap_afni/afni/v_3d_errts_cormat.py +243 -0
- niwrap_afni/afni/v_3d_exchange.py +226 -0
- niwrap_afni/afni/v_3d_extract_group_in_corr.py +195 -0
- niwrap_afni/afni/v_3d_extrema.py +384 -0
- niwrap_afni/afni/v_3d_fdr.py +325 -0
- niwrap_afni/afni/v_3d_fft.py +307 -0
- niwrap_afni/afni/v_3d_friedman.py +226 -0
- niwrap_afni/afni/v_3d_fwhmx.py +321 -0
- niwrap_afni/afni/v_3d_gen_feature_dist.py +262 -0
- niwrap_afni/afni/v_3d_gen_priors.py +487 -0
- niwrap_afni/afni/v_3d_getrow.py +243 -0
- niwrap_afni/afni/v_3d_grayplot.py +343 -0
- niwrap_afni/afni/v_3d_group_in_corr.py +484 -0
- niwrap_afni/afni/v_3d_hist.py +406 -0
- niwrap_afni/afni/v_3d_icc.py +228 -0
- niwrap_afni/afni/v_3d_intracranial.py +275 -0
- niwrap_afni/afni/v_3d_inv_fmri.py +317 -0
- niwrap_afni/afni/v_3d_isc.py +298 -0
- niwrap_afni/afni/v_3d_kruskal_wallis.py +231 -0
- niwrap_afni/afni/v_3d_lfcd.py +249 -0
- niwrap_afni/afni/v_3d_lme.py +524 -0
- niwrap_afni/afni/v_3d_lmer.py +425 -0
- niwrap_afni/afni/v_3d_local_acf.py +224 -0
- niwrap_afni/afni/v_3d_local_bistat.py +325 -0
- niwrap_afni/afni/v_3d_local_histog.py +268 -0
- niwrap_afni/afni/v_3d_local_pv.py +318 -0
- niwrap_afni/afni/v_3d_local_svd.py +258 -0
- niwrap_afni/afni/v_3d_local_unifize.py +286 -0
- niwrap_afni/afni/v_3d_localstat.py +427 -0
- niwrap_afni/afni/v_3d_lomb_scargle.py +307 -0
- niwrap_afni/afni/v_3d_lrflip.py +202 -0
- niwrap_afni/afni/v_3d_lss.py +175 -0
- niwrap_afni/afni/v_3d_mann_whitney.py +234 -0
- niwrap_afni/afni/v_3d_mask_to_ascii.py +189 -0
- niwrap_afni/afni/v_3d_match.py +300 -0
- niwrap_afni/afni/v_3d_mean.py +364 -0
- niwrap_afni/afni/v_3d_median_filter.py +238 -0
- niwrap_afni/afni/v_3d_mema.py +171 -0
- niwrap_afni/afni/v_3d_mepfm.py +256 -0
- niwrap_afni/afni/v_3d_mse.py +283 -0
- niwrap_afni/afni/v_3d_mss.py +397 -0
- niwrap_afni/afni/v_3d_multi_thresh.py +306 -0
- niwrap_afni/afni/v_3d_mvm.py +359 -0
- niwrap_afni/afni/v_3d_mvm_validator.py +191 -0
- niwrap_afni/afni/v_3d_net_corr.py +398 -0
- niwrap_afni/afni/v_3d_nlfim.py +241 -0
- niwrap_afni/afni/v_3d_normality_test.py +209 -0
- niwrap_afni/afni/v_3d_notes.py +246 -0
- niwrap_afni/afni/v_3d_nwarp_adjust.py +218 -0
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79
|
+
Get build cargs function by command type.
|
|
80
|
+
|
|
81
|
+
Args:
|
|
82
|
+
t: Command type.
|
|
83
|
+
Returns:
|
|
84
|
+
Build cargs function.
|
|
85
|
+
"""
|
|
86
|
+
return {
|
|
87
|
+
"1dplot": v_1dplot_cargs,
|
|
88
|
+
}.get(t)
|
|
89
|
+
|
|
90
|
+
|
|
91
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+
def dyn_outputs(
|
|
92
|
+
t: str,
|
|
93
|
+
) -> typing.Any:
|
|
94
|
+
"""
|
|
95
|
+
Get build outputs function by command type.
|
|
96
|
+
|
|
97
|
+
Args:
|
|
98
|
+
t: Command type.
|
|
99
|
+
Returns:
|
|
100
|
+
Build outputs function.
|
|
101
|
+
"""
|
|
102
|
+
return {
|
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103
|
+
}.get(t)
|
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104
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+
|
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105
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+
|
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106
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+
class V1dplotOutputs(typing.NamedTuple):
|
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107
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+
"""
|
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108
|
+
Output object returned when calling `v_1dplot(...)`.
|
|
109
|
+
"""
|
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110
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+
root: OutputPathType
|
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111
|
+
"""Output root folder. This is the root folder for all outputs."""
|
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112
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+
|
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113
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+
|
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114
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+
def v_1dplot_params(
|
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115
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+
tsfiles: list[InputPathType],
|
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116
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+
install: bool = False,
|
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117
|
+
sep: bool = False,
|
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118
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+
one: bool = False,
|
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119
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+
sepscl: bool = False,
|
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120
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+
noline: bool = False,
|
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121
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+
noline_1: bool = False,
|
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122
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+
box: bool = False,
|
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123
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+
hist: bool = False,
|
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124
|
+
norm2: bool = False,
|
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125
|
+
normx: bool = False,
|
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126
|
+
norm1: bool = False,
|
|
127
|
+
demean: bool = False,
|
|
128
|
+
x: InputPathType | None = None,
|
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129
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+
xl10: InputPathType | None = None,
|
|
130
|
+
dx: float | None = None,
|
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131
|
+
xzero: float | None = None,
|
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132
|
+
nopush: bool = False,
|
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133
|
+
ignore: float | None = None,
|
|
134
|
+
use: float | None = None,
|
|
135
|
+
xlabel: str | None = None,
|
|
136
|
+
ylabel: str | None = None,
|
|
137
|
+
plabel: str | None = None,
|
|
138
|
+
title: str | None = None,
|
|
139
|
+
wintitle: str | None = None,
|
|
140
|
+
naked: bool = False,
|
|
141
|
+
aspect: float | None = None,
|
|
142
|
+
stdin: bool = False,
|
|
143
|
+
ps: bool = False,
|
|
144
|
+
jpg: str | None = None,
|
|
145
|
+
jpeg: str | None = None,
|
|
146
|
+
png: str | None = None,
|
|
147
|
+
pnm: str | None = None,
|
|
148
|
+
pngs: str | None = None,
|
|
149
|
+
jpgs: str | None = None,
|
|
150
|
+
jpegs: str | None = None,
|
|
151
|
+
pnms: str | None = None,
|
|
152
|
+
ytran: str | None = None,
|
|
153
|
+
xtran: str | None = None,
|
|
154
|
+
xaxis: str | None = None,
|
|
155
|
+
yaxis: str | None = None,
|
|
156
|
+
ynames: list[str] | None = None,
|
|
157
|
+
volreg: bool = False,
|
|
158
|
+
thick: bool = False,
|
|
159
|
+
thick_1: bool = False,
|
|
160
|
+
dashed: str | None = None,
|
|
161
|
+
setenv: str | None = None,
|
|
162
|
+
censor_rgb: str | None = None,
|
|
163
|
+
censor: InputPathType | None = None,
|
|
164
|
+
censortr: list[str] | None = None,
|
|
165
|
+
concat: InputPathType | None = None,
|
|
166
|
+
rbox: str | None = None,
|
|
167
|
+
rbox_1: str | None = None,
|
|
168
|
+
line: str | None = None,
|
|
169
|
+
) -> V1dplotParameters:
|
|
170
|
+
"""
|
|
171
|
+
Build parameters.
|
|
172
|
+
|
|
173
|
+
Args:
|
|
174
|
+
tsfiles: Input time series files (*.1D) to be plotted.
|
|
175
|
+
install: Install a new X11 colormap.
|
|
176
|
+
sep: Plot each column in a separate sub-graph.
|
|
177
|
+
one: Plot all columns together in one big graph.
|
|
178
|
+
sepscl: Plot each column in a separate sub-graph and allow each\
|
|
179
|
+
sub-graph to have a different y-scale. This option is meaningless with\
|
|
180
|
+
-one!.
|
|
181
|
+
noline: Same as -noline, but will not try to plot values outside the\
|
|
182
|
+
rectangular box that contains the graph axes.
|
|
183
|
+
noline_1: Same as -noline, but will not try to plot values outside the\
|
|
184
|
+
rectangular box that contains the graph axes.
|
|
185
|
+
box: Plot a small 'box' at each data point.
|
|
186
|
+
hist: Plot graphs in histogram style (i.e., vertical boxes).
|
|
187
|
+
norm2: Independently scale each time series plotted to have L_2 norm =\
|
|
188
|
+
1 (sum of squares).
|
|
189
|
+
normx: Independently scale each time series plotted to have max\
|
|
190
|
+
absolute value = 1 (L_infinity norm).
|
|
191
|
+
norm1: Independently scale each time series plotted to have max sum of\
|
|
192
|
+
absolute values = 1 (L_1 norm).
|
|
193
|
+
demean: Remove the mean from each time series before normalizing.
|
|
194
|
+
x: Use for X axis the data in a specified .1D file.
|
|
195
|
+
xl10: Use log10 of the specified .1D file as the X axis.
|
|
196
|
+
dx: Spacing between points on the x-axis.
|
|
197
|
+
xzero: Initial x coordinate.
|
|
198
|
+
nopush: Don't 'push' axes ranges outwards.
|
|
199
|
+
ignore: Skip first 'nn' rows in the input file.
|
|
200
|
+
use: Plot 'mm' points.
|
|
201
|
+
xlabel: Put string 'aa' below the x-axis.
|
|
202
|
+
ylabel: Put string 'aa' to the left of the y-axis.
|
|
203
|
+
plabel: Put string 'pp' atop the plot.
|
|
204
|
+
title: Same as -plabel, but only works with -ps/-png/-jpg/-pnm options.
|
|
205
|
+
wintitle: Set string 'pp' as the title of the frame containing the\
|
|
206
|
+
plot.
|
|
207
|
+
naked: Do NOT plot axes or labels, just the graph(s).
|
|
208
|
+
aspect: Set the width-to-height ratio of the plot region to 'A'.
|
|
209
|
+
stdin: Don't read from tsfile; instead, read from stdin and plot it.
|
|
210
|
+
ps: Don't draw plot in a window; instead, write it to stdout in\
|
|
211
|
+
PostScript format.
|
|
212
|
+
jpg: Render plot to JPEG image and save to a file named 'fname'.
|
|
213
|
+
jpeg: Render plot to JPEG image and save to a file named 'fname'.
|
|
214
|
+
png: Render plot to PNG image and save to a file named 'fname'.
|
|
215
|
+
pnm: Render plot to PNM image and save to a file named 'fname'.
|
|
216
|
+
pngs: Render plot to PNG image of specified size and save to a file\
|
|
217
|
+
named 'fname'.
|
|
218
|
+
jpgs: Render plot to JPEG image of specified size and save to a file\
|
|
219
|
+
named 'fname'.
|
|
220
|
+
jpegs: Render plot to JPEG image of specified size and save to a file\
|
|
221
|
+
named 'fname'.
|
|
222
|
+
pnms: Render plot to PNM image of specified size and save to a file\
|
|
223
|
+
named 'fname'.
|
|
224
|
+
ytran: Transform the data along the y-axis by applying the expression\
|
|
225
|
+
to each input value.
|
|
226
|
+
xtran: Transform the data along the x-axis by applying the expression\
|
|
227
|
+
to each input value.
|
|
228
|
+
xaxis: Set the x-axis to run from value 'b' to value 't', with 'n'\
|
|
229
|
+
major divisions and 'm' minor tic marks per major division.
|
|
230
|
+
yaxis: Set the y-axis to run from value 'b' to value 't', with 'n'\
|
|
231
|
+
major divisions and 'm' minor tic marks per major division.
|
|
232
|
+
ynames: Use the strings as labels to the right of the graphs,\
|
|
233
|
+
corresponding to each input column.
|
|
234
|
+
volreg: Makes the 'ynames' be the same as the 6 labels used in\
|
|
235
|
+
plug_volreg for Roll, Pitch, Yaw, I-S, R-L, and A-P movements.
|
|
236
|
+
thick: Twice the power of '-thick' at no extra cost!.
|
|
237
|
+
thick_1: Twice the power of '-thick' at no extra cost!.
|
|
238
|
+
dashed: Plot dashed lines between data points using specified\
|
|
239
|
+
colon-separated list of dash values (1: solid, 2: longer dashes, 3:\
|
|
240
|
+
shorter dashes).
|
|
241
|
+
setenv: Set environment variable 'name' to 'val' for this run of the\
|
|
242
|
+
program only.
|
|
243
|
+
censor_rgb: Set the color used for marking to a specified color.
|
|
244
|
+
censor: Specify the filename of the censor .1D time series.
|
|
245
|
+
censortr: Specify time indexes to be marked in the graph(s).
|
|
246
|
+
concat: Specify the filename for the list of concatenated runs.
|
|
247
|
+
rbox: Draw a rectangular box with one extra horizontal line.
|
|
248
|
+
rbox_1: Draw a rectangular box with one extra horizontal line.
|
|
249
|
+
line: Draw one line segment.
|
|
250
|
+
Returns:
|
|
251
|
+
Parameter dictionary
|
|
252
|
+
"""
|
|
253
|
+
params = {
|
|
254
|
+
"__STYXTYPE__": "1dplot",
|
|
255
|
+
"tsfiles": tsfiles,
|
|
256
|
+
"install": install,
|
|
257
|
+
"sep": sep,
|
|
258
|
+
"one": one,
|
|
259
|
+
"sepscl": sepscl,
|
|
260
|
+
"NOLINE": noline,
|
|
261
|
+
"NOLINE_1": noline_1,
|
|
262
|
+
"box": box,
|
|
263
|
+
"hist": hist,
|
|
264
|
+
"norm2": norm2,
|
|
265
|
+
"normx": normx,
|
|
266
|
+
"norm1": norm1,
|
|
267
|
+
"demean": demean,
|
|
268
|
+
"nopush": nopush,
|
|
269
|
+
"naked": naked,
|
|
270
|
+
"stdin": stdin,
|
|
271
|
+
"ps": ps,
|
|
272
|
+
"volreg": volreg,
|
|
273
|
+
"THICK": thick,
|
|
274
|
+
"THICK_1": thick_1,
|
|
275
|
+
}
|
|
276
|
+
if x is not None:
|
|
277
|
+
params["x"] = x
|
|
278
|
+
if xl10 is not None:
|
|
279
|
+
params["xl10"] = xl10
|
|
280
|
+
if dx is not None:
|
|
281
|
+
params["dx"] = dx
|
|
282
|
+
if xzero is not None:
|
|
283
|
+
params["xzero"] = xzero
|
|
284
|
+
if ignore is not None:
|
|
285
|
+
params["ignore"] = ignore
|
|
286
|
+
if use is not None:
|
|
287
|
+
params["use"] = use
|
|
288
|
+
if xlabel is not None:
|
|
289
|
+
params["xlabel"] = xlabel
|
|
290
|
+
if ylabel is not None:
|
|
291
|
+
params["ylabel"] = ylabel
|
|
292
|
+
if plabel is not None:
|
|
293
|
+
params["plabel"] = plabel
|
|
294
|
+
if title is not None:
|
|
295
|
+
params["title"] = title
|
|
296
|
+
if wintitle is not None:
|
|
297
|
+
params["wintitle"] = wintitle
|
|
298
|
+
if aspect is not None:
|
|
299
|
+
params["aspect"] = aspect
|
|
300
|
+
if jpg is not None:
|
|
301
|
+
params["jpg"] = jpg
|
|
302
|
+
if jpeg is not None:
|
|
303
|
+
params["jpeg"] = jpeg
|
|
304
|
+
if png is not None:
|
|
305
|
+
params["png"] = png
|
|
306
|
+
if pnm is not None:
|
|
307
|
+
params["pnm"] = pnm
|
|
308
|
+
if pngs is not None:
|
|
309
|
+
params["pngs"] = pngs
|
|
310
|
+
if jpgs is not None:
|
|
311
|
+
params["jpgs"] = jpgs
|
|
312
|
+
if jpegs is not None:
|
|
313
|
+
params["jpegs"] = jpegs
|
|
314
|
+
if pnms is not None:
|
|
315
|
+
params["pnms"] = pnms
|
|
316
|
+
if ytran is not None:
|
|
317
|
+
params["ytran"] = ytran
|
|
318
|
+
if xtran is not None:
|
|
319
|
+
params["xtran"] = xtran
|
|
320
|
+
if xaxis is not None:
|
|
321
|
+
params["xaxis"] = xaxis
|
|
322
|
+
if yaxis is not None:
|
|
323
|
+
params["yaxis"] = yaxis
|
|
324
|
+
if ynames is not None:
|
|
325
|
+
params["ynames"] = ynames
|
|
326
|
+
if dashed is not None:
|
|
327
|
+
params["dashed"] = dashed
|
|
328
|
+
if setenv is not None:
|
|
329
|
+
params["setenv"] = setenv
|
|
330
|
+
if censor_rgb is not None:
|
|
331
|
+
params["censor_RGB"] = censor_rgb
|
|
332
|
+
if censor is not None:
|
|
333
|
+
params["censor"] = censor
|
|
334
|
+
if censortr is not None:
|
|
335
|
+
params["CENSORTR"] = censortr
|
|
336
|
+
if concat is not None:
|
|
337
|
+
params["concat"] = concat
|
|
338
|
+
if rbox is not None:
|
|
339
|
+
params["Rbox"] = rbox
|
|
340
|
+
if rbox_1 is not None:
|
|
341
|
+
params["Rbox_1"] = rbox_1
|
|
342
|
+
if line is not None:
|
|
343
|
+
params["line"] = line
|
|
344
|
+
return params
|
|
345
|
+
|
|
346
|
+
|
|
347
|
+
def v_1dplot_cargs(
|
|
348
|
+
params: V1dplotParameters,
|
|
349
|
+
execution: Execution,
|
|
350
|
+
) -> list[str]:
|
|
351
|
+
"""
|
|
352
|
+
Build command-line arguments from parameters.
|
|
353
|
+
|
|
354
|
+
Args:
|
|
355
|
+
params: The parameters.
|
|
356
|
+
execution: The execution object for resolving input paths.
|
|
357
|
+
Returns:
|
|
358
|
+
Command-line arguments.
|
|
359
|
+
"""
|
|
360
|
+
cargs = []
|
|
361
|
+
cargs.append("1dplot")
|
|
362
|
+
cargs.extend([execution.input_file(f) for f in params.get("tsfiles")])
|
|
363
|
+
if params.get("install"):
|
|
364
|
+
cargs.append("-install")
|
|
365
|
+
if params.get("sep"):
|
|
366
|
+
cargs.append("-sep")
|
|
367
|
+
if params.get("one"):
|
|
368
|
+
cargs.append("-one")
|
|
369
|
+
if params.get("sepscl"):
|
|
370
|
+
cargs.append("-sepscl")
|
|
371
|
+
if params.get("NOLINE"):
|
|
372
|
+
cargs.append("-NOLINE")
|
|
373
|
+
if params.get("NOLINE_1"):
|
|
374
|
+
cargs.append("-NOLINE")
|
|
375
|
+
if params.get("box"):
|
|
376
|
+
cargs.append("-box")
|
|
377
|
+
if params.get("hist"):
|
|
378
|
+
cargs.append("-hist")
|
|
379
|
+
if params.get("norm2"):
|
|
380
|
+
cargs.append("-norm2")
|
|
381
|
+
if params.get("normx"):
|
|
382
|
+
cargs.append("-normx")
|
|
383
|
+
if params.get("norm1"):
|
|
384
|
+
cargs.append("-norm1")
|
|
385
|
+
if params.get("demean"):
|
|
386
|
+
cargs.append("-demean")
|
|
387
|
+
if params.get("x") is not None:
|
|
388
|
+
cargs.extend([
|
|
389
|
+
"-x",
|
|
390
|
+
execution.input_file(params.get("x"))
|
|
391
|
+
])
|
|
392
|
+
if params.get("xl10") is not None:
|
|
393
|
+
cargs.extend([
|
|
394
|
+
"-xl10",
|
|
395
|
+
execution.input_file(params.get("xl10"))
|
|
396
|
+
])
|
|
397
|
+
if params.get("dx") is not None:
|
|
398
|
+
cargs.extend([
|
|
399
|
+
"-dx",
|
|
400
|
+
str(params.get("dx"))
|
|
401
|
+
])
|
|
402
|
+
if params.get("xzero") is not None:
|
|
403
|
+
cargs.extend([
|
|
404
|
+
"-xzero",
|
|
405
|
+
str(params.get("xzero"))
|
|
406
|
+
])
|
|
407
|
+
if params.get("nopush"):
|
|
408
|
+
cargs.append("-nopush")
|
|
409
|
+
if params.get("ignore") is not None:
|
|
410
|
+
cargs.extend([
|
|
411
|
+
"-ignore",
|
|
412
|
+
str(params.get("ignore"))
|
|
413
|
+
])
|
|
414
|
+
if params.get("use") is not None:
|
|
415
|
+
cargs.extend([
|
|
416
|
+
"-use",
|
|
417
|
+
str(params.get("use"))
|
|
418
|
+
])
|
|
419
|
+
if params.get("xlabel") is not None:
|
|
420
|
+
cargs.extend([
|
|
421
|
+
"-xlabel",
|
|
422
|
+
params.get("xlabel")
|
|
423
|
+
])
|
|
424
|
+
if params.get("ylabel") is not None:
|
|
425
|
+
cargs.extend([
|
|
426
|
+
"-ylabel",
|
|
427
|
+
params.get("ylabel")
|
|
428
|
+
])
|
|
429
|
+
if params.get("plabel") is not None:
|
|
430
|
+
cargs.extend([
|
|
431
|
+
"-plabel",
|
|
432
|
+
params.get("plabel")
|
|
433
|
+
])
|
|
434
|
+
if params.get("title") is not None:
|
|
435
|
+
cargs.extend([
|
|
436
|
+
"-title",
|
|
437
|
+
params.get("title")
|
|
438
|
+
])
|
|
439
|
+
if params.get("wintitle") is not None:
|
|
440
|
+
cargs.extend([
|
|
441
|
+
"-wintitle",
|
|
442
|
+
params.get("wintitle")
|
|
443
|
+
])
|
|
444
|
+
if params.get("naked"):
|
|
445
|
+
cargs.append("-naked")
|
|
446
|
+
if params.get("aspect") is not None:
|
|
447
|
+
cargs.extend([
|
|
448
|
+
"-aspect",
|
|
449
|
+
str(params.get("aspect"))
|
|
450
|
+
])
|
|
451
|
+
if params.get("stdin"):
|
|
452
|
+
cargs.append("-stdin")
|
|
453
|
+
if params.get("ps"):
|
|
454
|
+
cargs.append("-ps")
|
|
455
|
+
if params.get("jpg") is not None:
|
|
456
|
+
cargs.extend([
|
|
457
|
+
"-jpg",
|
|
458
|
+
params.get("jpg")
|
|
459
|
+
])
|
|
460
|
+
if params.get("jpeg") is not None:
|
|
461
|
+
cargs.extend([
|
|
462
|
+
"-jpeg",
|
|
463
|
+
params.get("jpeg")
|
|
464
|
+
])
|
|
465
|
+
if params.get("png") is not None:
|
|
466
|
+
cargs.extend([
|
|
467
|
+
"-png",
|
|
468
|
+
params.get("png")
|
|
469
|
+
])
|
|
470
|
+
if params.get("pnm") is not None:
|
|
471
|
+
cargs.extend([
|
|
472
|
+
"-pnm",
|
|
473
|
+
params.get("pnm")
|
|
474
|
+
])
|
|
475
|
+
if params.get("pngs") is not None:
|
|
476
|
+
cargs.extend([
|
|
477
|
+
"-pngs",
|
|
478
|
+
params.get("pngs")
|
|
479
|
+
])
|
|
480
|
+
if params.get("jpgs") is not None:
|
|
481
|
+
cargs.extend([
|
|
482
|
+
"-jpgs",
|
|
483
|
+
params.get("jpgs")
|
|
484
|
+
])
|
|
485
|
+
if params.get("jpegs") is not None:
|
|
486
|
+
cargs.extend([
|
|
487
|
+
"-jpegs",
|
|
488
|
+
params.get("jpegs")
|
|
489
|
+
])
|
|
490
|
+
if params.get("pnms") is not None:
|
|
491
|
+
cargs.extend([
|
|
492
|
+
"-pnms",
|
|
493
|
+
params.get("pnms")
|
|
494
|
+
])
|
|
495
|
+
if params.get("ytran") is not None:
|
|
496
|
+
cargs.extend([
|
|
497
|
+
"-ytran",
|
|
498
|
+
params.get("ytran")
|
|
499
|
+
])
|
|
500
|
+
if params.get("xtran") is not None:
|
|
501
|
+
cargs.extend([
|
|
502
|
+
"-xtran",
|
|
503
|
+
params.get("xtran")
|
|
504
|
+
])
|
|
505
|
+
if params.get("xaxis") is not None:
|
|
506
|
+
cargs.extend([
|
|
507
|
+
"-xaxis",
|
|
508
|
+
params.get("xaxis")
|
|
509
|
+
])
|
|
510
|
+
if params.get("yaxis") is not None:
|
|
511
|
+
cargs.extend([
|
|
512
|
+
"-yaxis",
|
|
513
|
+
params.get("yaxis")
|
|
514
|
+
])
|
|
515
|
+
if params.get("ynames") is not None:
|
|
516
|
+
cargs.extend([
|
|
517
|
+
"-ynames",
|
|
518
|
+
*params.get("ynames")
|
|
519
|
+
])
|
|
520
|
+
if params.get("volreg"):
|
|
521
|
+
cargs.append("-volreg")
|
|
522
|
+
if params.get("THICK"):
|
|
523
|
+
cargs.append("-THICK")
|
|
524
|
+
if params.get("THICK_1"):
|
|
525
|
+
cargs.append("-THICK")
|
|
526
|
+
if params.get("dashed") is not None:
|
|
527
|
+
cargs.extend([
|
|
528
|
+
"-dashed",
|
|
529
|
+
params.get("dashed")
|
|
530
|
+
])
|
|
531
|
+
if params.get("setenv") is not None:
|
|
532
|
+
cargs.extend([
|
|
533
|
+
"-D",
|
|
534
|
+
params.get("setenv")
|
|
535
|
+
])
|
|
536
|
+
if params.get("censor_RGB") is not None:
|
|
537
|
+
cargs.extend([
|
|
538
|
+
"-censor_RGB",
|
|
539
|
+
params.get("censor_RGB")
|
|
540
|
+
])
|
|
541
|
+
if params.get("censor") is not None:
|
|
542
|
+
cargs.extend([
|
|
543
|
+
"-censor",
|
|
544
|
+
execution.input_file(params.get("censor"))
|
|
545
|
+
])
|
|
546
|
+
if params.get("CENSORTR") is not None:
|
|
547
|
+
cargs.extend([
|
|
548
|
+
"-CENSORTR",
|
|
549
|
+
*params.get("CENSORTR")
|
|
550
|
+
])
|
|
551
|
+
if params.get("concat") is not None:
|
|
552
|
+
cargs.extend([
|
|
553
|
+
"-concat",
|
|
554
|
+
execution.input_file(params.get("concat"))
|
|
555
|
+
])
|
|
556
|
+
if params.get("Rbox") is not None:
|
|
557
|
+
cargs.extend([
|
|
558
|
+
"-Rbox",
|
|
559
|
+
params.get("Rbox")
|
|
560
|
+
])
|
|
561
|
+
if params.get("Rbox_1") is not None:
|
|
562
|
+
cargs.extend([
|
|
563
|
+
"-Rbox",
|
|
564
|
+
params.get("Rbox_1")
|
|
565
|
+
])
|
|
566
|
+
if params.get("line") is not None:
|
|
567
|
+
cargs.extend([
|
|
568
|
+
"-line",
|
|
569
|
+
params.get("line")
|
|
570
|
+
])
|
|
571
|
+
return cargs
|
|
572
|
+
|
|
573
|
+
|
|
574
|
+
def v_1dplot_outputs(
|
|
575
|
+
params: V1dplotParameters,
|
|
576
|
+
execution: Execution,
|
|
577
|
+
) -> V1dplotOutputs:
|
|
578
|
+
"""
|
|
579
|
+
Build outputs object containing output file paths and possibly stdout/stderr.
|
|
580
|
+
|
|
581
|
+
Args:
|
|
582
|
+
params: The parameters.
|
|
583
|
+
execution: The execution object for resolving input paths.
|
|
584
|
+
Returns:
|
|
585
|
+
Outputs object.
|
|
586
|
+
"""
|
|
587
|
+
ret = V1dplotOutputs(
|
|
588
|
+
root=execution.output_file("."),
|
|
589
|
+
)
|
|
590
|
+
return ret
|
|
591
|
+
|
|
592
|
+
|
|
593
|
+
def v_1dplot_execute(
|
|
594
|
+
params: V1dplotParameters,
|
|
595
|
+
execution: Execution,
|
|
596
|
+
) -> V1dplotOutputs:
|
|
597
|
+
"""
|
|
598
|
+
Graphs the columns of a *.1D time series file to the X11 screen, or to an image
|
|
599
|
+
file (.jpg or .png).
|
|
600
|
+
|
|
601
|
+
Author: AFNI Developers
|
|
602
|
+
|
|
603
|
+
URL: https://afni.nimh.nih.gov/
|
|
604
|
+
|
|
605
|
+
Args:
|
|
606
|
+
params: The parameters.
|
|
607
|
+
execution: The execution object.
|
|
608
|
+
Returns:
|
|
609
|
+
NamedTuple of outputs (described in `V1dplotOutputs`).
|
|
610
|
+
"""
|
|
611
|
+
params = execution.params(params)
|
|
612
|
+
cargs = v_1dplot_cargs(params, execution)
|
|
613
|
+
ret = v_1dplot_outputs(params, execution)
|
|
614
|
+
execution.run(cargs)
|
|
615
|
+
return ret
|
|
616
|
+
|
|
617
|
+
|
|
618
|
+
def v_1dplot(
|
|
619
|
+
tsfiles: list[InputPathType],
|
|
620
|
+
install: bool = False,
|
|
621
|
+
sep: bool = False,
|
|
622
|
+
one: bool = False,
|
|
623
|
+
sepscl: bool = False,
|
|
624
|
+
noline: bool = False,
|
|
625
|
+
noline_1: bool = False,
|
|
626
|
+
box: bool = False,
|
|
627
|
+
hist: bool = False,
|
|
628
|
+
norm2: bool = False,
|
|
629
|
+
normx: bool = False,
|
|
630
|
+
norm1: bool = False,
|
|
631
|
+
demean: bool = False,
|
|
632
|
+
x: InputPathType | None = None,
|
|
633
|
+
xl10: InputPathType | None = None,
|
|
634
|
+
dx: float | None = None,
|
|
635
|
+
xzero: float | None = None,
|
|
636
|
+
nopush: bool = False,
|
|
637
|
+
ignore: float | None = None,
|
|
638
|
+
use: float | None = None,
|
|
639
|
+
xlabel: str | None = None,
|
|
640
|
+
ylabel: str | None = None,
|
|
641
|
+
plabel: str | None = None,
|
|
642
|
+
title: str | None = None,
|
|
643
|
+
wintitle: str | None = None,
|
|
644
|
+
naked: bool = False,
|
|
645
|
+
aspect: float | None = None,
|
|
646
|
+
stdin: bool = False,
|
|
647
|
+
ps: bool = False,
|
|
648
|
+
jpg: str | None = None,
|
|
649
|
+
jpeg: str | None = None,
|
|
650
|
+
png: str | None = None,
|
|
651
|
+
pnm: str | None = None,
|
|
652
|
+
pngs: str | None = None,
|
|
653
|
+
jpgs: str | None = None,
|
|
654
|
+
jpegs: str | None = None,
|
|
655
|
+
pnms: str | None = None,
|
|
656
|
+
ytran: str | None = None,
|
|
657
|
+
xtran: str | None = None,
|
|
658
|
+
xaxis: str | None = None,
|
|
659
|
+
yaxis: str | None = None,
|
|
660
|
+
ynames: list[str] | None = None,
|
|
661
|
+
volreg: bool = False,
|
|
662
|
+
thick: bool = False,
|
|
663
|
+
thick_1: bool = False,
|
|
664
|
+
dashed: str | None = None,
|
|
665
|
+
setenv: str | None = None,
|
|
666
|
+
censor_rgb: str | None = None,
|
|
667
|
+
censor: InputPathType | None = None,
|
|
668
|
+
censortr: list[str] | None = None,
|
|
669
|
+
concat: InputPathType | None = None,
|
|
670
|
+
rbox: str | None = None,
|
|
671
|
+
rbox_1: str | None = None,
|
|
672
|
+
line: str | None = None,
|
|
673
|
+
runner: Runner | None = None,
|
|
674
|
+
) -> V1dplotOutputs:
|
|
675
|
+
"""
|
|
676
|
+
Graphs the columns of a *.1D time series file to the X11 screen, or to an image
|
|
677
|
+
file (.jpg or .png).
|
|
678
|
+
|
|
679
|
+
Author: AFNI Developers
|
|
680
|
+
|
|
681
|
+
URL: https://afni.nimh.nih.gov/
|
|
682
|
+
|
|
683
|
+
Args:
|
|
684
|
+
tsfiles: Input time series files (*.1D) to be plotted.
|
|
685
|
+
install: Install a new X11 colormap.
|
|
686
|
+
sep: Plot each column in a separate sub-graph.
|
|
687
|
+
one: Plot all columns together in one big graph.
|
|
688
|
+
sepscl: Plot each column in a separate sub-graph and allow each\
|
|
689
|
+
sub-graph to have a different y-scale. This option is meaningless with\
|
|
690
|
+
-one!.
|
|
691
|
+
noline: Same as -noline, but will not try to plot values outside the\
|
|
692
|
+
rectangular box that contains the graph axes.
|
|
693
|
+
noline_1: Same as -noline, but will not try to plot values outside the\
|
|
694
|
+
rectangular box that contains the graph axes.
|
|
695
|
+
box: Plot a small 'box' at each data point.
|
|
696
|
+
hist: Plot graphs in histogram style (i.e., vertical boxes).
|
|
697
|
+
norm2: Independently scale each time series plotted to have L_2 norm =\
|
|
698
|
+
1 (sum of squares).
|
|
699
|
+
normx: Independently scale each time series plotted to have max\
|
|
700
|
+
absolute value = 1 (L_infinity norm).
|
|
701
|
+
norm1: Independently scale each time series plotted to have max sum of\
|
|
702
|
+
absolute values = 1 (L_1 norm).
|
|
703
|
+
demean: Remove the mean from each time series before normalizing.
|
|
704
|
+
x: Use for X axis the data in a specified .1D file.
|
|
705
|
+
xl10: Use log10 of the specified .1D file as the X axis.
|
|
706
|
+
dx: Spacing between points on the x-axis.
|
|
707
|
+
xzero: Initial x coordinate.
|
|
708
|
+
nopush: Don't 'push' axes ranges outwards.
|
|
709
|
+
ignore: Skip first 'nn' rows in the input file.
|
|
710
|
+
use: Plot 'mm' points.
|
|
711
|
+
xlabel: Put string 'aa' below the x-axis.
|
|
712
|
+
ylabel: Put string 'aa' to the left of the y-axis.
|
|
713
|
+
plabel: Put string 'pp' atop the plot.
|
|
714
|
+
title: Same as -plabel, but only works with -ps/-png/-jpg/-pnm options.
|
|
715
|
+
wintitle: Set string 'pp' as the title of the frame containing the\
|
|
716
|
+
plot.
|
|
717
|
+
naked: Do NOT plot axes or labels, just the graph(s).
|
|
718
|
+
aspect: Set the width-to-height ratio of the plot region to 'A'.
|
|
719
|
+
stdin: Don't read from tsfile; instead, read from stdin and plot it.
|
|
720
|
+
ps: Don't draw plot in a window; instead, write it to stdout in\
|
|
721
|
+
PostScript format.
|
|
722
|
+
jpg: Render plot to JPEG image and save to a file named 'fname'.
|
|
723
|
+
jpeg: Render plot to JPEG image and save to a file named 'fname'.
|
|
724
|
+
png: Render plot to PNG image and save to a file named 'fname'.
|
|
725
|
+
pnm: Render plot to PNM image and save to a file named 'fname'.
|
|
726
|
+
pngs: Render plot to PNG image of specified size and save to a file\
|
|
727
|
+
named 'fname'.
|
|
728
|
+
jpgs: Render plot to JPEG image of specified size and save to a file\
|
|
729
|
+
named 'fname'.
|
|
730
|
+
jpegs: Render plot to JPEG image of specified size and save to a file\
|
|
731
|
+
named 'fname'.
|
|
732
|
+
pnms: Render plot to PNM image of specified size and save to a file\
|
|
733
|
+
named 'fname'.
|
|
734
|
+
ytran: Transform the data along the y-axis by applying the expression\
|
|
735
|
+
to each input value.
|
|
736
|
+
xtran: Transform the data along the x-axis by applying the expression\
|
|
737
|
+
to each input value.
|
|
738
|
+
xaxis: Set the x-axis to run from value 'b' to value 't', with 'n'\
|
|
739
|
+
major divisions and 'm' minor tic marks per major division.
|
|
740
|
+
yaxis: Set the y-axis to run from value 'b' to value 't', with 'n'\
|
|
741
|
+
major divisions and 'm' minor tic marks per major division.
|
|
742
|
+
ynames: Use the strings as labels to the right of the graphs,\
|
|
743
|
+
corresponding to each input column.
|
|
744
|
+
volreg: Makes the 'ynames' be the same as the 6 labels used in\
|
|
745
|
+
plug_volreg for Roll, Pitch, Yaw, I-S, R-L, and A-P movements.
|
|
746
|
+
thick: Twice the power of '-thick' at no extra cost!.
|
|
747
|
+
thick_1: Twice the power of '-thick' at no extra cost!.
|
|
748
|
+
dashed: Plot dashed lines between data points using specified\
|
|
749
|
+
colon-separated list of dash values (1: solid, 2: longer dashes, 3:\
|
|
750
|
+
shorter dashes).
|
|
751
|
+
setenv: Set environment variable 'name' to 'val' for this run of the\
|
|
752
|
+
program only.
|
|
753
|
+
censor_rgb: Set the color used for marking to a specified color.
|
|
754
|
+
censor: Specify the filename of the censor .1D time series.
|
|
755
|
+
censortr: Specify time indexes to be marked in the graph(s).
|
|
756
|
+
concat: Specify the filename for the list of concatenated runs.
|
|
757
|
+
rbox: Draw a rectangular box with one extra horizontal line.
|
|
758
|
+
rbox_1: Draw a rectangular box with one extra horizontal line.
|
|
759
|
+
line: Draw one line segment.
|
|
760
|
+
runner: Command runner.
|
|
761
|
+
Returns:
|
|
762
|
+
NamedTuple of outputs (described in `V1dplotOutputs`).
|
|
763
|
+
"""
|
|
764
|
+
runner = runner or get_global_runner()
|
|
765
|
+
execution = runner.start_execution(V_1DPLOT_METADATA)
|
|
766
|
+
params = v_1dplot_params(
|
|
767
|
+
tsfiles=tsfiles,
|
|
768
|
+
install=install,
|
|
769
|
+
sep=sep,
|
|
770
|
+
one=one,
|
|
771
|
+
sepscl=sepscl,
|
|
772
|
+
noline=noline,
|
|
773
|
+
noline_1=noline_1,
|
|
774
|
+
box=box,
|
|
775
|
+
hist=hist,
|
|
776
|
+
norm2=norm2,
|
|
777
|
+
normx=normx,
|
|
778
|
+
norm1=norm1,
|
|
779
|
+
demean=demean,
|
|
780
|
+
x=x,
|
|
781
|
+
xl10=xl10,
|
|
782
|
+
dx=dx,
|
|
783
|
+
xzero=xzero,
|
|
784
|
+
nopush=nopush,
|
|
785
|
+
ignore=ignore,
|
|
786
|
+
use=use,
|
|
787
|
+
xlabel=xlabel,
|
|
788
|
+
ylabel=ylabel,
|
|
789
|
+
plabel=plabel,
|
|
790
|
+
title=title,
|
|
791
|
+
wintitle=wintitle,
|
|
792
|
+
naked=naked,
|
|
793
|
+
aspect=aspect,
|
|
794
|
+
stdin=stdin,
|
|
795
|
+
ps=ps,
|
|
796
|
+
jpg=jpg,
|
|
797
|
+
jpeg=jpeg,
|
|
798
|
+
png=png,
|
|
799
|
+
pnm=pnm,
|
|
800
|
+
pngs=pngs,
|
|
801
|
+
jpgs=jpgs,
|
|
802
|
+
jpegs=jpegs,
|
|
803
|
+
pnms=pnms,
|
|
804
|
+
ytran=ytran,
|
|
805
|
+
xtran=xtran,
|
|
806
|
+
xaxis=xaxis,
|
|
807
|
+
yaxis=yaxis,
|
|
808
|
+
ynames=ynames,
|
|
809
|
+
volreg=volreg,
|
|
810
|
+
thick=thick,
|
|
811
|
+
thick_1=thick_1,
|
|
812
|
+
dashed=dashed,
|
|
813
|
+
setenv=setenv,
|
|
814
|
+
censor_rgb=censor_rgb,
|
|
815
|
+
censor=censor,
|
|
816
|
+
censortr=censortr,
|
|
817
|
+
concat=concat,
|
|
818
|
+
rbox=rbox,
|
|
819
|
+
rbox_1=rbox_1,
|
|
820
|
+
line=line,
|
|
821
|
+
)
|
|
822
|
+
return v_1dplot_execute(params, execution)
|
|
823
|
+
|
|
824
|
+
|
|
825
|
+
__all__ = [
|
|
826
|
+
"V1dplotOutputs",
|
|
827
|
+
"V1dplotParameters",
|
|
828
|
+
"V_1DPLOT_METADATA",
|
|
829
|
+
"v_1dplot",
|
|
830
|
+
"v_1dplot_params",
|
|
831
|
+
]
|