niwrap-afni 0.5.0__py3-none-any.whl

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  1. niwrap_afni/afni/__init__.py +582 -0
  2. niwrap_afni/afni/abids_json_info_py.py +247 -0
  3. niwrap_afni/afni/abids_json_tool_py.py +212 -0
  4. niwrap_afni/afni/abids_tool.py +191 -0
  5. niwrap_afni/afni/adjunct_apqc_tsnr_general.py +447 -0
  6. niwrap_afni/afni/adjunct_aw_tableize_roi_info_py.py +224 -0
  7. niwrap_afni/afni/adjunct_calc_mont_dims_py.py +173 -0
  8. niwrap_afni/afni/adjunct_combine_str_py.py +198 -0
  9. niwrap_afni/afni/adjunct_is_label_py.py +180 -0
  10. niwrap_afni/afni/adjunct_make_script_and_rst_py.py +237 -0
  11. niwrap_afni/afni/adjunct_select_str_py.py +188 -0
  12. niwrap_afni/afni/adjunct_simplify_cost.py +172 -0
  13. niwrap_afni/afni/adjunct_suma_fs_mask_and_qc.py +249 -0
  14. niwrap_afni/afni/adjunct_suma_fs_roi_info.py +228 -0
  15. niwrap_afni/afni/adjunct_tort_plot_dp_align.py +248 -0
  16. niwrap_afni/afni/adwarp.py +296 -0
  17. niwrap_afni/afni/afni.py +428 -0
  18. niwrap_afni/afni/afni_batch_r.py +215 -0
  19. niwrap_afni/afni/afni_check_omp.py +174 -0
  20. niwrap_afni/afni/afni_history.py +413 -0
  21. niwrap_afni/afni/afni_open.py +304 -0
  22. niwrap_afni/afni/afni_proc_py.py +283 -0
  23. niwrap_afni/afni/afni_run_r.py +180 -0
  24. niwrap_afni/afni/afni_system_check_py.py +274 -0
  25. niwrap_afni/afni/aiv.py +231 -0
  26. niwrap_afni/afni/align_epi_anat.py +356 -0
  27. niwrap_afni/afni/analyze_trace.py +292 -0
  28. niwrap_afni/afni/ap_run_simple_rest.py +293 -0
  29. niwrap_afni/afni/apqc_make_html.py +175 -0
  30. niwrap_afni/afni/apqc_make_tcsh_py.py +245 -0
  31. niwrap_afni/afni/apsearch.py +195 -0
  32. niwrap_afni/afni/auto_warp_py.py +527 -0
  33. niwrap_afni/afni/balloon.py +210 -0
  34. niwrap_afni/afni/bayes_view.py +196 -0
  35. niwrap_afni/afni/bayesian_group_ana_py.py +342 -0
  36. niwrap_afni/afni/brain_skin.py +358 -0
  37. niwrap_afni/afni/build_afni_py.py +330 -0
  38. niwrap_afni/afni/cat_matvec.py +185 -0
  39. niwrap_afni/afni/ccalc.py +192 -0
  40. niwrap_afni/afni/cifti_tool.py +271 -0
  41. niwrap_afni/afni/cjpeg.py +233 -0
  42. niwrap_afni/afni/clust_exp_hist_table_py.py +218 -0
  43. niwrap_afni/afni/clust_exp_stat_parse_py.py +346 -0
  44. niwrap_afni/afni/column_cat.py +208 -0
  45. niwrap_afni/afni/compare_surfaces.py +344 -0
  46. niwrap_afni/afni/convert_cdiflist_to_grads.py +251 -0
  47. niwrap_afni/afni/convert_dset.py +421 -0
  48. niwrap_afni/afni/convert_surface.py +247 -0
  49. niwrap_afni/afni/convex_hull.py +386 -0
  50. niwrap_afni/afni/count.py +327 -0
  51. niwrap_afni/afni/create_icosahedron.py +282 -0
  52. niwrap_afni/afni/dcm2niix_afni.py +550 -0
  53. niwrap_afni/afni/dicom_hdr.py +263 -0
  54. niwrap_afni/afni/dicom_hinfo.py +220 -0
  55. niwrap_afni/afni/dicom_to_raw.py +176 -0
  56. niwrap_afni/afni/dimon.py +286 -0
  57. niwrap_afni/afni/djpeg.py +233 -0
  58. niwrap_afni/afni/drive_suma.py +520 -0
  59. niwrap_afni/afni/dsetstat2p.py +218 -0
  60. niwrap_afni/afni/dtistudio_fiberto_segments.py +198 -0
  61. niwrap_afni/afni/epi_b0_correct.py +485 -0
  62. niwrap_afni/afni/examine_xmat.py +280 -0
  63. niwrap_afni/afni/fat_mat2d_plot_py.py +428 -0
  64. niwrap_afni/afni/fat_mat_sel_py.py +469 -0
  65. niwrap_afni/afni/fat_mat_tableize.py +292 -0
  66. niwrap_afni/afni/fat_mvm_gridconv_py.py +207 -0
  67. niwrap_afni/afni/fat_mvm_prep.py +256 -0
  68. niwrap_afni/afni/fat_mvm_scripter_py.py +353 -0
  69. niwrap_afni/afni/fat_proc_align_anat_pair.py +307 -0
  70. niwrap_afni/afni/fat_proc_axialize_anat.py +415 -0
  71. niwrap_afni/afni/fat_proc_connec_vis.py +346 -0
  72. niwrap_afni/afni/fat_proc_convert_dcm_anat.py +283 -0
  73. niwrap_afni/afni/fat_proc_convert_dcm_dwis.py +374 -0
  74. niwrap_afni/afni/fat_proc_decmap.py +321 -0
  75. niwrap_afni/afni/fat_proc_dwi_to_dt.py +522 -0
  76. niwrap_afni/afni/fat_proc_filter_dwis.py +321 -0
  77. niwrap_afni/afni/fat_proc_imit2w_from_t1w.py +283 -0
  78. niwrap_afni/afni/fat_proc_map_to_dti.py +308 -0
  79. niwrap_afni/afni/fat_proc_select_vols.py +266 -0
  80. niwrap_afni/afni/fat_roi_row.py +233 -0
  81. niwrap_afni/afni/fatcat_matplot.py +181 -0
  82. niwrap_afni/afni/fdrval.py +241 -0
  83. niwrap_afni/afni/fftest.py +197 -0
  84. niwrap_afni/afni/file_tool.py +580 -0
  85. niwrap_afni/afni/fim2.py +465 -0
  86. niwrap_afni/afni/find_variance_lines.py +353 -0
  87. niwrap_afni/afni/firdesign.py +235 -0
  88. niwrap_afni/afni/float_scan.py +213 -0
  89. niwrap_afni/afni/from3d.py +292 -0
  90. niwrap_afni/afni/fsread_annot.py +322 -0
  91. niwrap_afni/afni/gen_epi_review_py.py +292 -0
  92. niwrap_afni/afni/gen_group_command.py +324 -0
  93. niwrap_afni/afni/gen_ss_review_scripts.py +421 -0
  94. niwrap_afni/afni/gen_ss_review_table_py.py +324 -0
  95. niwrap_afni/afni/get_afni_model_prf.py +196 -0
  96. niwrap_afni/afni/get_afni_model_prf_6.py +222 -0
  97. niwrap_afni/afni/get_afni_model_prf_6_bad.py +212 -0
  98. niwrap_afni/afni/gifti_tool.py +426 -0
  99. niwrap_afni/afni/gltsymtest.py +193 -0
  100. niwrap_afni/afni/help_format.py +176 -0
  101. niwrap_afni/afni/im2niml.py +178 -0
  102. niwrap_afni/afni/images_equal.py +195 -0
  103. niwrap_afni/afni/imand.py +203 -0
  104. niwrap_afni/afni/imaver.py +201 -0
  105. niwrap_afni/afni/imcalc.py +235 -0
  106. niwrap_afni/afni/imcat.py +498 -0
  107. niwrap_afni/afni/imcutup.py +241 -0
  108. niwrap_afni/afni/imdump.py +177 -0
  109. niwrap_afni/afni/immask.py +223 -0
  110. niwrap_afni/afni/imreg.py +389 -0
  111. niwrap_afni/afni/imrotate.py +217 -0
  112. niwrap_afni/afni/imstack.py +209 -0
  113. niwrap_afni/afni/imstat.py +217 -0
  114. niwrap_afni/afni/imupsam.py +205 -0
  115. niwrap_afni/afni/init_user_dotfiles_py.py +353 -0
  116. niwrap_afni/afni/inspec.py +255 -0
  117. niwrap_afni/afni/iso_surface.py +344 -0
  118. niwrap_afni/afni/make_color_map.py +417 -0
  119. niwrap_afni/afni/make_pq_script_py.py +200 -0
  120. niwrap_afni/afni/make_random_timing_py.py +471 -0
  121. niwrap_afni/afni/make_stim_times_py.py +304 -0
  122. niwrap_afni/afni/map_icosahedron.py +296 -0
  123. niwrap_afni/afni/map_track_id.py +254 -0
  124. niwrap_afni/afni/mba.py +360 -0
  125. niwrap_afni/afni/meica_py.py +259 -0
  126. niwrap_afni/afni/myget.py +186 -0
  127. niwrap_afni/afni/neuro_deconvolve_py.py +291 -0
  128. niwrap_afni/afni/nicat.py +207 -0
  129. niwrap_afni/afni/niccc.py +307 -0
  130. niwrap_afni/afni/nifti_tool.py +310 -0
  131. niwrap_afni/afni/niml_feedme.py +260 -0
  132. niwrap_afni/afni/nsize.py +184 -0
  133. niwrap_afni/afni/p2dsetstat.py +216 -0
  134. niwrap_afni/afni/parse_fs_lt_log_py.py +217 -0
  135. niwrap_afni/afni/plugout_drive.py +259 -0
  136. niwrap_afni/afni/plugout_ijk.py +297 -0
  137. niwrap_afni/afni/plugout_tt.py +326 -0
  138. niwrap_afni/afni/plugout_tta.py +290 -0
  139. niwrap_afni/afni/prompt_popup.py +205 -0
  140. niwrap_afni/afni/prompt_user.py +190 -0
  141. niwrap_afni/afni/pta.py +279 -0
  142. niwrap_afni/afni/qdelaunay.py +534 -0
  143. niwrap_afni/afni/qhull.py +376 -0
  144. niwrap_afni/afni/quick_alpha_vals_py.py +189 -0
  145. niwrap_afni/afni/quickspec.py +259 -0
  146. niwrap_afni/afni/quickspec_sl.py +282 -0
  147. niwrap_afni/afni/quotize.py +194 -0
  148. niwrap_afni/afni/r_pkgs_install.py +227 -0
  149. niwrap_afni/afni/rba.py +508 -0
  150. niwrap_afni/afni/rbox.py +245 -0
  151. niwrap_afni/afni/read_matlab_files_py.py +225 -0
  152. niwrap_afni/afni/realtime_receiver.py +310 -0
  153. niwrap_afni/afni/retro_ts_py.py +477 -0
  154. niwrap_afni/afni/rmz.py +203 -0
  155. niwrap_afni/afni/roi2dataset.py +310 -0
  156. niwrap_afni/afni/roigrow.py +276 -0
  157. niwrap_afni/afni/rotcom.py +190 -0
  158. niwrap_afni/afni/rsfgen.py +330 -0
  159. niwrap_afni/afni/rtfeedme.py +308 -0
  160. niwrap_afni/afni/samp_bias.py +245 -0
  161. niwrap_afni/afni/scale_to_map.py +481 -0
  162. niwrap_afni/afni/serial_helper.py +298 -0
  163. niwrap_afni/afni/sfim.py +229 -0
  164. niwrap_afni/afni/slow_surf_clustsim_py.py +285 -0
  165. niwrap_afni/afni/spharm_deco.py +284 -0
  166. niwrap_afni/afni/spharm_reco.py +274 -0
  167. niwrap_afni/afni/stimband.py +229 -0
  168. niwrap_afni/afni/strblast.py +239 -0
  169. niwrap_afni/afni/suma_change_spec.py +225 -0
  170. niwrap_afni/afni/suma_glxdino.py +175 -0
  171. niwrap_afni/afni/surf2_vol_coord.py +305 -0
  172. niwrap_afni/afni/surf_clust.py +611 -0
  173. niwrap_afni/afni/surf_dist.py +208 -0
  174. niwrap_afni/afni/surf_dset_info.py +355 -0
  175. niwrap_afni/afni/surf_extrema.py +279 -0
  176. niwrap_afni/afni/surf_fwhm.py +350 -0
  177. niwrap_afni/afni/surf_info.py +288 -0
  178. niwrap_afni/afni/surf_layers.py +300 -0
  179. niwrap_afni/afni/surf_localstat.py +242 -0
  180. niwrap_afni/afni/surf_measures.py +373 -0
  181. niwrap_afni/afni/surf_mesh.py +256 -0
  182. niwrap_afni/afni/surf_patch.py +412 -0
  183. niwrap_afni/afni/surf_qual.py +250 -0
  184. niwrap_afni/afni/surf_retino_map.py +225 -0
  185. niwrap_afni/afni/surf_smooth.py +388 -0
  186. niwrap_afni/afni/surf_to_surf.py +327 -0
  187. niwrap_afni/afni/surface_metrics.py +377 -0
  188. niwrap_afni/afni/tedana_wrapper_py.py +306 -0
  189. niwrap_afni/afni/tfim.py +267 -0
  190. niwrap_afni/afni/timing_tool_py.py +406 -0
  191. niwrap_afni/afni/to3d.py +643 -0
  192. niwrap_afni/afni/tokens.py +192 -0
  193. niwrap_afni/afni/trr.py +405 -0
  194. niwrap_afni/afni/uber_align_test_py.py +266 -0
  195. niwrap_afni/afni/uber_proc_py.py +176 -0
  196. niwrap_afni/afni/uber_skel.py +277 -0
  197. niwrap_afni/afni/uber_subject_py.py +707 -0
  198. niwrap_afni/afni/un_warp_epi_py.py +232 -0
  199. niwrap_afni/afni/uniq_images.py +180 -0
  200. niwrap_afni/afni/v_1d_apar2mat.py +262 -0
  201. niwrap_afni/afni/v_1d_astrip.py +176 -0
  202. niwrap_afni/afni/v_1d_bandpass.py +238 -0
  203. niwrap_afni/afni/v_1d_bport.py +277 -0
  204. niwrap_afni/afni/v_1d_correlate.py +218 -0
  205. niwrap_afni/afni/v_1d_dw_grad_o_mat__.py +429 -0
  206. niwrap_afni/afni/v_1d_flag_motion.py +212 -0
  207. niwrap_afni/afni/v_1d_marry.py +214 -0
  208. niwrap_afni/afni/v_1d_nlfit.py +254 -0
  209. niwrap_afni/afni/v_1d_rplot.py +180 -0
  210. niwrap_afni/afni/v_1d_sem.py +215 -0
  211. niwrap_afni/afni/v_1d_tool_py.py +319 -0
  212. niwrap_afni/afni/v_1d_tsort.py +216 -0
  213. niwrap_afni/afni/v_1d_upsample.py +195 -0
  214. niwrap_afni/afni/v_1dcat.py +266 -0
  215. niwrap_afni/afni/v_1ddot.py +249 -0
  216. niwrap_afni/afni/v_1deval.py +265 -0
  217. niwrap_afni/afni/v_1dfft.py +269 -0
  218. niwrap_afni/afni/v_1dgen_arma11.py +319 -0
  219. niwrap_afni/afni/v_1dgrayplot.py +238 -0
  220. niwrap_afni/afni/v_1dmatcalc.py +180 -0
  221. niwrap_afni/afni/v_1dnorm.py +224 -0
  222. niwrap_afni/afni/v_1dplot.py +831 -0
  223. niwrap_afni/afni/v_1dplot_py.py +578 -0
  224. niwrap_afni/afni/v_1dsound.py +292 -0
  225. niwrap_afni/afni/v_1dsum.py +235 -0
  226. niwrap_afni/afni/v_1dsvd.py +272 -0
  227. niwrap_afni/afni/v_1dtranspose.py +188 -0
  228. niwrap_afni/afni/v_24swap.py +194 -0
  229. niwrap_afni/afni/v_2d_im_reg.py +312 -0
  230. niwrap_afni/afni/v_2dcat.py +496 -0
  231. niwrap_afni/afni/v_2perm.py +233 -0
  232. niwrap_afni/afni/v_2swap.py +181 -0
  233. niwrap_afni/afni/v_3_droimaker.py +419 -0
  234. niwrap_afni/afni/v_3d_aboverlap.py +211 -0
  235. niwrap_afni/afni/v_3d_acost.py +210 -0
  236. niwrap_afni/afni/v_3d_afnito3_d.py +177 -0
  237. niwrap_afni/afni/v_3d_afnito_analyze.py +219 -0
  238. niwrap_afni/afni/v_3d_afnito_nifti.py +245 -0
  239. niwrap_afni/afni/v_3d_afnito_niml.py +175 -0
  240. niwrap_afni/afni/v_3d_afnito_raw.py +202 -0
  241. niwrap_afni/afni/v_3d_allineate.py +350 -0
  242. niwrap_afni/afni/v_3d_amp_to_rsfc.py +262 -0
  243. niwrap_afni/afni/v_3d_anhist.py +260 -0
  244. niwrap_afni/afni/v_3d_anova.py +359 -0
  245. niwrap_afni/afni/v_3d_anova2.py +515 -0
  246. niwrap_afni/afni/v_3d_anova3.py +302 -0
  247. niwrap_afni/afni/v_3d_attribute.py +248 -0
  248. niwrap_afni/afni/v_3d_auto_tcorrelate.py +314 -0
  249. niwrap_afni/afni/v_3d_autobox.py +335 -0
  250. niwrap_afni/afni/v_3d_automask.py +258 -0
  251. niwrap_afni/afni/v_3d_ball_match.py +229 -0
  252. niwrap_afni/afni/v_3d_bandpass.py +381 -0
  253. niwrap_afni/afni/v_3d_blur_in_mask.py +291 -0
  254. niwrap_afni/afni/v_3d_blur_to_fwhm.py +267 -0
  255. niwrap_afni/afni/v_3d_brain_sync.py +267 -0
  256. niwrap_afni/afni/v_3d_brain_voyagerto_afni.py +313 -0
  257. niwrap_afni/afni/v_3d_brick_stat.py +463 -0
  258. niwrap_afni/afni/v_3d_clip_level.py +175 -0
  259. niwrap_afni/afni/v_3d_clust_count.py +229 -0
  260. niwrap_afni/afni/v_3d_clust_sim.py +196 -0
  261. niwrap_afni/afni/v_3d_clusterize.py +448 -0
  262. niwrap_afni/afni/v_3d_cm.py +177 -0
  263. niwrap_afni/afni/v_3d_compare_affine.py +215 -0
  264. niwrap_afni/afni/v_3d_conformist.py +176 -0
  265. niwrap_afni/afni/v_3d_convolve.py +197 -0
  266. niwrap_afni/afni/v_3d_cruiseto_afni.py +264 -0
  267. niwrap_afni/afni/v_3d_deconvolve.py +371 -0
  268. niwrap_afni/afni/v_3d_degree_centrality.py +270 -0
  269. niwrap_afni/afni/v_3d_depth_map.py +317 -0
  270. niwrap_afni/afni/v_3d_despike.py +191 -0
  271. niwrap_afni/afni/v_3d_detrend.py +191 -0
  272. niwrap_afni/afni/v_3d_dft.py +245 -0
  273. niwrap_afni/afni/v_3d_diff.py +254 -0
  274. niwrap_afni/afni/v_3d_dteig.py +236 -0
  275. niwrap_afni/afni/v_3d_dtto_dwi.py +199 -0
  276. niwrap_afni/afni/v_3d_dtto_noisy_dwi.py +275 -0
  277. niwrap_afni/afni/v_3d_dwito_dt.py +191 -0
  278. niwrap_afni/afni/v_3d_dwuncert.py +283 -0
  279. niwrap_afni/afni/v_3d_ecm.py +363 -0
  280. niwrap_afni/afni/v_3d_edu_01_scale.py +216 -0
  281. niwrap_afni/afni/v_3d_eigs_to_dt.py +271 -0
  282. niwrap_afni/afni/v_3d_empty.py +224 -0
  283. niwrap_afni/afni/v_3d_entropy.py +181 -0
  284. niwrap_afni/afni/v_3d_errts_cormat.py +243 -0
  285. niwrap_afni/afni/v_3d_exchange.py +226 -0
  286. niwrap_afni/afni/v_3d_extract_group_in_corr.py +195 -0
  287. niwrap_afni/afni/v_3d_extrema.py +384 -0
  288. niwrap_afni/afni/v_3d_fdr.py +325 -0
  289. niwrap_afni/afni/v_3d_fft.py +307 -0
  290. niwrap_afni/afni/v_3d_friedman.py +226 -0
  291. niwrap_afni/afni/v_3d_fwhmx.py +321 -0
  292. niwrap_afni/afni/v_3d_gen_feature_dist.py +262 -0
  293. niwrap_afni/afni/v_3d_gen_priors.py +487 -0
  294. niwrap_afni/afni/v_3d_getrow.py +243 -0
  295. niwrap_afni/afni/v_3d_grayplot.py +343 -0
  296. niwrap_afni/afni/v_3d_group_in_corr.py +484 -0
  297. niwrap_afni/afni/v_3d_hist.py +406 -0
  298. niwrap_afni/afni/v_3d_icc.py +228 -0
  299. niwrap_afni/afni/v_3d_intracranial.py +275 -0
  300. niwrap_afni/afni/v_3d_inv_fmri.py +317 -0
  301. niwrap_afni/afni/v_3d_isc.py +298 -0
  302. niwrap_afni/afni/v_3d_kruskal_wallis.py +231 -0
  303. niwrap_afni/afni/v_3d_lfcd.py +249 -0
  304. niwrap_afni/afni/v_3d_lme.py +524 -0
  305. niwrap_afni/afni/v_3d_lmer.py +425 -0
  306. niwrap_afni/afni/v_3d_local_acf.py +224 -0
  307. niwrap_afni/afni/v_3d_local_bistat.py +325 -0
  308. niwrap_afni/afni/v_3d_local_histog.py +268 -0
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  440. niwrap_afni/afni/v_3drotate.py +477 -0
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  442. niwrap_afni/afni/v_3dsvm_linpredict.py +203 -0
  443. niwrap_afni/afni/v_3dto_xdataset.py +195 -0
  444. niwrap_afni/afni/v_3dttest__.py +444 -0
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  449. niwrap_afni/afni/v__2dwarper_allin.py +207 -0
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  451. niwrap_afni/afni/v__add_edge.py +344 -0
  452. niwrap_afni/afni/v__afni_env.py +254 -0
  453. niwrap_afni/afni/v__afni_orient2_raimap.py +172 -0
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  455. niwrap_afni/afni/v__afni_r_package_install.py +241 -0
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  460. niwrap_afni/afni/v__align_centers.py +324 -0
  461. niwrap_afni/afni/v__align_partial_oblique.py +285 -0
  462. niwrap_afni/afni/v__anaticor.py +326 -0
  463. niwrap_afni/afni/v__animal_warper.py +602 -0
  464. niwrap_afni/afni/v__atlasize.py +402 -0
  465. niwrap_afni/afni/v__auto_tlrc.py +642 -0
  466. niwrap_afni/afni/v__build_afni_xlib.py +201 -0
  467. niwrap_afni/afni/v__center_distance.py +187 -0
  468. niwrap_afni/afni/v__chauffeur_afni.py +204 -0
  469. niwrap_afni/afni/v__check_for_afni_dset.py +178 -0
  470. niwrap_afni/afni/v__clip_volume.py +388 -0
  471. niwrap_afni/afni/v__clust_exp_cat_lab.py +201 -0
  472. niwrap_afni/afni/v__clust_exp_run_shiny.py +181 -0
  473. niwrap_afni/afni/v__command_globb.py +220 -0
  474. niwrap_afni/afni/v__compute_gcor.py +246 -0
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  476. niwrap_afni/afni/v__deblank_file_names.py +210 -0
  477. niwrap_afni/afni/v__demo_prompt.py +176 -0
  478. niwrap_afni/afni/v__dice_metric.py +315 -0
  479. niwrap_afni/afni/v__diff_files.py +273 -0
  480. niwrap_afni/afni/v__diff_tree.py +358 -0
  481. niwrap_afni/afni/v__djunct_4d_imager.py +225 -0
  482. niwrap_afni/afni/v__djunct_4d_slices_to_3d_vol.py +177 -0
  483. niwrap_afni/afni/v__djunct_anonymize.py +207 -0
  484. niwrap_afni/afni/v__djunct_dwi_selector.py +192 -0
  485. niwrap_afni/afni/v__djunct_edgy_align_check.py +339 -0
  486. niwrap_afni/afni/v__djunct_modal_smoothing_with_rep.py +249 -0
  487. niwrap_afni/afni/v__djunct_montage_coordinator.py +234 -0
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  491. niwrap_afni/afni/v__electro_grid.py +244 -0
  492. niwrap_afni/afni/v__examine_gen_feat_dists.py +277 -0
  493. niwrap_afni/afni/v__extract_meica_ortvec.py +248 -0
  494. niwrap_afni/afni/v__fast_roi.py +290 -0
  495. niwrap_afni/afni/v__fat_tract_colorize.py +267 -0
  496. niwrap_afni/afni/v__find_afni_dset_path.py +199 -0
  497. niwrap_afni/afni/v__fix_fssphere.py +236 -0
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  499. niwrap_afni/afni/v__from_rai.py +186 -0
  500. niwrap_afni/afni/v__fs_roi_label.py +290 -0
  501. niwrap_afni/afni/v__fslabel2dset.py +217 -0
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  505. niwrap_afni/afni/v__get_afni_prefix.py +182 -0
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  509. niwrap_afni/afni/v__grad_flip_test.py +359 -0
  510. niwrap_afni/afni/v__grayplot.py +189 -0
  511. niwrap_afni/afni/v__help_afni.py +165 -0
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  514. niwrap_afni/afni/v__make_label_table.py +587 -0
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  522. niwrap_afni/afni/v__noisy_skull_strip.py +212 -0
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  530. niwrap_afni/afni/v__retino_proc.py +670 -0
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  537. niwrap_afni/afni/v__show_dynamic_range.py +183 -0
  538. niwrap_afni/afni/v__simulate_motion.py +350 -0
  539. niwrap_afni/afni/v__skull_strip_touch_up.py +224 -0
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  552. niwrap_afni/afni/v__surf_smooth_heat_07_examples.py +172 -0
  553. niwrap_afni/afni/v__surf_to_vol_spackle.py +322 -0
  554. niwrap_afni/afni/v__t1scale.py +328 -0
  555. niwrap_afni/afni/v__thickness_master.py +213 -0
  556. niwrap_afni/afni/v__time_diff.py +180 -0
  557. niwrap_afni/afni/v__to_mni_awarp.py +188 -0
  558. niwrap_afni/afni/v__to_mni_qwarpar.py +170 -0
  559. niwrap_afni/afni/v__to_rai.py +170 -0
  560. niwrap_afni/afni/v__update_afni_binaries.py +410 -0
  561. niwrap_afni/afni/v__vol_center.py +188 -0
  562. niwrap_afni/afni/v__xyz_to_ijk.py +221 -0
  563. niwrap_afni/afni/vecwarp.py +265 -0
  564. niwrap_afni/afni/waver.py +458 -0
  565. niwrap_afni/afni/whirlgif.py +254 -0
  566. niwrap_afni/afni/xmat_tool_py.py +381 -0
  567. niwrap_afni-0.5.0.dist-info/METADATA +8 -0
  568. niwrap_afni-0.5.0.dist-info/RECORD +569 -0
  569. niwrap_afni-0.5.0.dist-info/WHEEL +4 -0
@@ -0,0 +1,831 @@
1
+ # This file was auto generated by Styx.
2
+ # Do not edit this file directly.
3
+
4
+ import typing
5
+ import pathlib
6
+ from styxdefs import *
7
+
8
+ V_1DPLOT_METADATA = Metadata(
9
+ id="8a73ee3a42ebaf653aef47adb6f3fa781e513997.boutiques",
10
+ name="1dplot",
11
+ package="afni",
12
+ container_image_tag="afni/afni_make_build:AFNI_24.2.06",
13
+ )
14
+
15
+
16
+ V1dplotParameters = typing.TypedDict('V1dplotParameters', {
17
+ "__STYX_TYPE__": typing.Literal["1dplot"],
18
+ "tsfiles": list[InputPathType],
19
+ "install": bool,
20
+ "sep": bool,
21
+ "one": bool,
22
+ "sepscl": bool,
23
+ "NOLINE": bool,
24
+ "NOLINE_1": bool,
25
+ "box": bool,
26
+ "hist": bool,
27
+ "norm2": bool,
28
+ "normx": bool,
29
+ "norm1": bool,
30
+ "demean": bool,
31
+ "x": typing.NotRequired[InputPathType | None],
32
+ "xl10": typing.NotRequired[InputPathType | None],
33
+ "dx": typing.NotRequired[float | None],
34
+ "xzero": typing.NotRequired[float | None],
35
+ "nopush": bool,
36
+ "ignore": typing.NotRequired[float | None],
37
+ "use": typing.NotRequired[float | None],
38
+ "xlabel": typing.NotRequired[str | None],
39
+ "ylabel": typing.NotRequired[str | None],
40
+ "plabel": typing.NotRequired[str | None],
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+ "title": typing.NotRequired[str | None],
42
+ "wintitle": typing.NotRequired[str | None],
43
+ "naked": bool,
44
+ "aspect": typing.NotRequired[float | None],
45
+ "stdin": bool,
46
+ "ps": bool,
47
+ "jpg": typing.NotRequired[str | None],
48
+ "jpeg": typing.NotRequired[str | None],
49
+ "png": typing.NotRequired[str | None],
50
+ "pnm": typing.NotRequired[str | None],
51
+ "pngs": typing.NotRequired[str | None],
52
+ "jpgs": typing.NotRequired[str | None],
53
+ "jpegs": typing.NotRequired[str | None],
54
+ "pnms": typing.NotRequired[str | None],
55
+ "ytran": typing.NotRequired[str | None],
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+ "xtran": typing.NotRequired[str | None],
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+ "xaxis": typing.NotRequired[str | None],
58
+ "yaxis": typing.NotRequired[str | None],
59
+ "ynames": typing.NotRequired[list[str] | None],
60
+ "volreg": bool,
61
+ "THICK": bool,
62
+ "THICK_1": bool,
63
+ "dashed": typing.NotRequired[str | None],
64
+ "setenv": typing.NotRequired[str | None],
65
+ "censor_RGB": typing.NotRequired[str | None],
66
+ "censor": typing.NotRequired[InputPathType | None],
67
+ "CENSORTR": typing.NotRequired[list[str] | None],
68
+ "concat": typing.NotRequired[InputPathType | None],
69
+ "Rbox": typing.NotRequired[str | None],
70
+ "Rbox_1": typing.NotRequired[str | None],
71
+ "line": typing.NotRequired[str | None],
72
+ })
73
+
74
+
75
+ def dyn_cargs(
76
+ t: str,
77
+ ) -> typing.Any:
78
+ """
79
+ Get build cargs function by command type.
80
+
81
+ Args:
82
+ t: Command type.
83
+ Returns:
84
+ Build cargs function.
85
+ """
86
+ return {
87
+ "1dplot": v_1dplot_cargs,
88
+ }.get(t)
89
+
90
+
91
+ def dyn_outputs(
92
+ t: str,
93
+ ) -> typing.Any:
94
+ """
95
+ Get build outputs function by command type.
96
+
97
+ Args:
98
+ t: Command type.
99
+ Returns:
100
+ Build outputs function.
101
+ """
102
+ return {
103
+ }.get(t)
104
+
105
+
106
+ class V1dplotOutputs(typing.NamedTuple):
107
+ """
108
+ Output object returned when calling `v_1dplot(...)`.
109
+ """
110
+ root: OutputPathType
111
+ """Output root folder. This is the root folder for all outputs."""
112
+
113
+
114
+ def v_1dplot_params(
115
+ tsfiles: list[InputPathType],
116
+ install: bool = False,
117
+ sep: bool = False,
118
+ one: bool = False,
119
+ sepscl: bool = False,
120
+ noline: bool = False,
121
+ noline_1: bool = False,
122
+ box: bool = False,
123
+ hist: bool = False,
124
+ norm2: bool = False,
125
+ normx: bool = False,
126
+ norm1: bool = False,
127
+ demean: bool = False,
128
+ x: InputPathType | None = None,
129
+ xl10: InputPathType | None = None,
130
+ dx: float | None = None,
131
+ xzero: float | None = None,
132
+ nopush: bool = False,
133
+ ignore: float | None = None,
134
+ use: float | None = None,
135
+ xlabel: str | None = None,
136
+ ylabel: str | None = None,
137
+ plabel: str | None = None,
138
+ title: str | None = None,
139
+ wintitle: str | None = None,
140
+ naked: bool = False,
141
+ aspect: float | None = None,
142
+ stdin: bool = False,
143
+ ps: bool = False,
144
+ jpg: str | None = None,
145
+ jpeg: str | None = None,
146
+ png: str | None = None,
147
+ pnm: str | None = None,
148
+ pngs: str | None = None,
149
+ jpgs: str | None = None,
150
+ jpegs: str | None = None,
151
+ pnms: str | None = None,
152
+ ytran: str | None = None,
153
+ xtran: str | None = None,
154
+ xaxis: str | None = None,
155
+ yaxis: str | None = None,
156
+ ynames: list[str] | None = None,
157
+ volreg: bool = False,
158
+ thick: bool = False,
159
+ thick_1: bool = False,
160
+ dashed: str | None = None,
161
+ setenv: str | None = None,
162
+ censor_rgb: str | None = None,
163
+ censor: InputPathType | None = None,
164
+ censortr: list[str] | None = None,
165
+ concat: InputPathType | None = None,
166
+ rbox: str | None = None,
167
+ rbox_1: str | None = None,
168
+ line: str | None = None,
169
+ ) -> V1dplotParameters:
170
+ """
171
+ Build parameters.
172
+
173
+ Args:
174
+ tsfiles: Input time series files (*.1D) to be plotted.
175
+ install: Install a new X11 colormap.
176
+ sep: Plot each column in a separate sub-graph.
177
+ one: Plot all columns together in one big graph.
178
+ sepscl: Plot each column in a separate sub-graph and allow each\
179
+ sub-graph to have a different y-scale. This option is meaningless with\
180
+ -one!.
181
+ noline: Same as -noline, but will not try to plot values outside the\
182
+ rectangular box that contains the graph axes.
183
+ noline_1: Same as -noline, but will not try to plot values outside the\
184
+ rectangular box that contains the graph axes.
185
+ box: Plot a small 'box' at each data point.
186
+ hist: Plot graphs in histogram style (i.e., vertical boxes).
187
+ norm2: Independently scale each time series plotted to have L_2 norm =\
188
+ 1 (sum of squares).
189
+ normx: Independently scale each time series plotted to have max\
190
+ absolute value = 1 (L_infinity norm).
191
+ norm1: Independently scale each time series plotted to have max sum of\
192
+ absolute values = 1 (L_1 norm).
193
+ demean: Remove the mean from each time series before normalizing.
194
+ x: Use for X axis the data in a specified .1D file.
195
+ xl10: Use log10 of the specified .1D file as the X axis.
196
+ dx: Spacing between points on the x-axis.
197
+ xzero: Initial x coordinate.
198
+ nopush: Don't 'push' axes ranges outwards.
199
+ ignore: Skip first 'nn' rows in the input file.
200
+ use: Plot 'mm' points.
201
+ xlabel: Put string 'aa' below the x-axis.
202
+ ylabel: Put string 'aa' to the left of the y-axis.
203
+ plabel: Put string 'pp' atop the plot.
204
+ title: Same as -plabel, but only works with -ps/-png/-jpg/-pnm options.
205
+ wintitle: Set string 'pp' as the title of the frame containing the\
206
+ plot.
207
+ naked: Do NOT plot axes or labels, just the graph(s).
208
+ aspect: Set the width-to-height ratio of the plot region to 'A'.
209
+ stdin: Don't read from tsfile; instead, read from stdin and plot it.
210
+ ps: Don't draw plot in a window; instead, write it to stdout in\
211
+ PostScript format.
212
+ jpg: Render plot to JPEG image and save to a file named 'fname'.
213
+ jpeg: Render plot to JPEG image and save to a file named 'fname'.
214
+ png: Render plot to PNG image and save to a file named 'fname'.
215
+ pnm: Render plot to PNM image and save to a file named 'fname'.
216
+ pngs: Render plot to PNG image of specified size and save to a file\
217
+ named 'fname'.
218
+ jpgs: Render plot to JPEG image of specified size and save to a file\
219
+ named 'fname'.
220
+ jpegs: Render plot to JPEG image of specified size and save to a file\
221
+ named 'fname'.
222
+ pnms: Render plot to PNM image of specified size and save to a file\
223
+ named 'fname'.
224
+ ytran: Transform the data along the y-axis by applying the expression\
225
+ to each input value.
226
+ xtran: Transform the data along the x-axis by applying the expression\
227
+ to each input value.
228
+ xaxis: Set the x-axis to run from value 'b' to value 't', with 'n'\
229
+ major divisions and 'm' minor tic marks per major division.
230
+ yaxis: Set the y-axis to run from value 'b' to value 't', with 'n'\
231
+ major divisions and 'm' minor tic marks per major division.
232
+ ynames: Use the strings as labels to the right of the graphs,\
233
+ corresponding to each input column.
234
+ volreg: Makes the 'ynames' be the same as the 6 labels used in\
235
+ plug_volreg for Roll, Pitch, Yaw, I-S, R-L, and A-P movements.
236
+ thick: Twice the power of '-thick' at no extra cost!.
237
+ thick_1: Twice the power of '-thick' at no extra cost!.
238
+ dashed: Plot dashed lines between data points using specified\
239
+ colon-separated list of dash values (1: solid, 2: longer dashes, 3:\
240
+ shorter dashes).
241
+ setenv: Set environment variable 'name' to 'val' for this run of the\
242
+ program only.
243
+ censor_rgb: Set the color used for marking to a specified color.
244
+ censor: Specify the filename of the censor .1D time series.
245
+ censortr: Specify time indexes to be marked in the graph(s).
246
+ concat: Specify the filename for the list of concatenated runs.
247
+ rbox: Draw a rectangular box with one extra horizontal line.
248
+ rbox_1: Draw a rectangular box with one extra horizontal line.
249
+ line: Draw one line segment.
250
+ Returns:
251
+ Parameter dictionary
252
+ """
253
+ params = {
254
+ "__STYXTYPE__": "1dplot",
255
+ "tsfiles": tsfiles,
256
+ "install": install,
257
+ "sep": sep,
258
+ "one": one,
259
+ "sepscl": sepscl,
260
+ "NOLINE": noline,
261
+ "NOLINE_1": noline_1,
262
+ "box": box,
263
+ "hist": hist,
264
+ "norm2": norm2,
265
+ "normx": normx,
266
+ "norm1": norm1,
267
+ "demean": demean,
268
+ "nopush": nopush,
269
+ "naked": naked,
270
+ "stdin": stdin,
271
+ "ps": ps,
272
+ "volreg": volreg,
273
+ "THICK": thick,
274
+ "THICK_1": thick_1,
275
+ }
276
+ if x is not None:
277
+ params["x"] = x
278
+ if xl10 is not None:
279
+ params["xl10"] = xl10
280
+ if dx is not None:
281
+ params["dx"] = dx
282
+ if xzero is not None:
283
+ params["xzero"] = xzero
284
+ if ignore is not None:
285
+ params["ignore"] = ignore
286
+ if use is not None:
287
+ params["use"] = use
288
+ if xlabel is not None:
289
+ params["xlabel"] = xlabel
290
+ if ylabel is not None:
291
+ params["ylabel"] = ylabel
292
+ if plabel is not None:
293
+ params["plabel"] = plabel
294
+ if title is not None:
295
+ params["title"] = title
296
+ if wintitle is not None:
297
+ params["wintitle"] = wintitle
298
+ if aspect is not None:
299
+ params["aspect"] = aspect
300
+ if jpg is not None:
301
+ params["jpg"] = jpg
302
+ if jpeg is not None:
303
+ params["jpeg"] = jpeg
304
+ if png is not None:
305
+ params["png"] = png
306
+ if pnm is not None:
307
+ params["pnm"] = pnm
308
+ if pngs is not None:
309
+ params["pngs"] = pngs
310
+ if jpgs is not None:
311
+ params["jpgs"] = jpgs
312
+ if jpegs is not None:
313
+ params["jpegs"] = jpegs
314
+ if pnms is not None:
315
+ params["pnms"] = pnms
316
+ if ytran is not None:
317
+ params["ytran"] = ytran
318
+ if xtran is not None:
319
+ params["xtran"] = xtran
320
+ if xaxis is not None:
321
+ params["xaxis"] = xaxis
322
+ if yaxis is not None:
323
+ params["yaxis"] = yaxis
324
+ if ynames is not None:
325
+ params["ynames"] = ynames
326
+ if dashed is not None:
327
+ params["dashed"] = dashed
328
+ if setenv is not None:
329
+ params["setenv"] = setenv
330
+ if censor_rgb is not None:
331
+ params["censor_RGB"] = censor_rgb
332
+ if censor is not None:
333
+ params["censor"] = censor
334
+ if censortr is not None:
335
+ params["CENSORTR"] = censortr
336
+ if concat is not None:
337
+ params["concat"] = concat
338
+ if rbox is not None:
339
+ params["Rbox"] = rbox
340
+ if rbox_1 is not None:
341
+ params["Rbox_1"] = rbox_1
342
+ if line is not None:
343
+ params["line"] = line
344
+ return params
345
+
346
+
347
+ def v_1dplot_cargs(
348
+ params: V1dplotParameters,
349
+ execution: Execution,
350
+ ) -> list[str]:
351
+ """
352
+ Build command-line arguments from parameters.
353
+
354
+ Args:
355
+ params: The parameters.
356
+ execution: The execution object for resolving input paths.
357
+ Returns:
358
+ Command-line arguments.
359
+ """
360
+ cargs = []
361
+ cargs.append("1dplot")
362
+ cargs.extend([execution.input_file(f) for f in params.get("tsfiles")])
363
+ if params.get("install"):
364
+ cargs.append("-install")
365
+ if params.get("sep"):
366
+ cargs.append("-sep")
367
+ if params.get("one"):
368
+ cargs.append("-one")
369
+ if params.get("sepscl"):
370
+ cargs.append("-sepscl")
371
+ if params.get("NOLINE"):
372
+ cargs.append("-NOLINE")
373
+ if params.get("NOLINE_1"):
374
+ cargs.append("-NOLINE")
375
+ if params.get("box"):
376
+ cargs.append("-box")
377
+ if params.get("hist"):
378
+ cargs.append("-hist")
379
+ if params.get("norm2"):
380
+ cargs.append("-norm2")
381
+ if params.get("normx"):
382
+ cargs.append("-normx")
383
+ if params.get("norm1"):
384
+ cargs.append("-norm1")
385
+ if params.get("demean"):
386
+ cargs.append("-demean")
387
+ if params.get("x") is not None:
388
+ cargs.extend([
389
+ "-x",
390
+ execution.input_file(params.get("x"))
391
+ ])
392
+ if params.get("xl10") is not None:
393
+ cargs.extend([
394
+ "-xl10",
395
+ execution.input_file(params.get("xl10"))
396
+ ])
397
+ if params.get("dx") is not None:
398
+ cargs.extend([
399
+ "-dx",
400
+ str(params.get("dx"))
401
+ ])
402
+ if params.get("xzero") is not None:
403
+ cargs.extend([
404
+ "-xzero",
405
+ str(params.get("xzero"))
406
+ ])
407
+ if params.get("nopush"):
408
+ cargs.append("-nopush")
409
+ if params.get("ignore") is not None:
410
+ cargs.extend([
411
+ "-ignore",
412
+ str(params.get("ignore"))
413
+ ])
414
+ if params.get("use") is not None:
415
+ cargs.extend([
416
+ "-use",
417
+ str(params.get("use"))
418
+ ])
419
+ if params.get("xlabel") is not None:
420
+ cargs.extend([
421
+ "-xlabel",
422
+ params.get("xlabel")
423
+ ])
424
+ if params.get("ylabel") is not None:
425
+ cargs.extend([
426
+ "-ylabel",
427
+ params.get("ylabel")
428
+ ])
429
+ if params.get("plabel") is not None:
430
+ cargs.extend([
431
+ "-plabel",
432
+ params.get("plabel")
433
+ ])
434
+ if params.get("title") is not None:
435
+ cargs.extend([
436
+ "-title",
437
+ params.get("title")
438
+ ])
439
+ if params.get("wintitle") is not None:
440
+ cargs.extend([
441
+ "-wintitle",
442
+ params.get("wintitle")
443
+ ])
444
+ if params.get("naked"):
445
+ cargs.append("-naked")
446
+ if params.get("aspect") is not None:
447
+ cargs.extend([
448
+ "-aspect",
449
+ str(params.get("aspect"))
450
+ ])
451
+ if params.get("stdin"):
452
+ cargs.append("-stdin")
453
+ if params.get("ps"):
454
+ cargs.append("-ps")
455
+ if params.get("jpg") is not None:
456
+ cargs.extend([
457
+ "-jpg",
458
+ params.get("jpg")
459
+ ])
460
+ if params.get("jpeg") is not None:
461
+ cargs.extend([
462
+ "-jpeg",
463
+ params.get("jpeg")
464
+ ])
465
+ if params.get("png") is not None:
466
+ cargs.extend([
467
+ "-png",
468
+ params.get("png")
469
+ ])
470
+ if params.get("pnm") is not None:
471
+ cargs.extend([
472
+ "-pnm",
473
+ params.get("pnm")
474
+ ])
475
+ if params.get("pngs") is not None:
476
+ cargs.extend([
477
+ "-pngs",
478
+ params.get("pngs")
479
+ ])
480
+ if params.get("jpgs") is not None:
481
+ cargs.extend([
482
+ "-jpgs",
483
+ params.get("jpgs")
484
+ ])
485
+ if params.get("jpegs") is not None:
486
+ cargs.extend([
487
+ "-jpegs",
488
+ params.get("jpegs")
489
+ ])
490
+ if params.get("pnms") is not None:
491
+ cargs.extend([
492
+ "-pnms",
493
+ params.get("pnms")
494
+ ])
495
+ if params.get("ytran") is not None:
496
+ cargs.extend([
497
+ "-ytran",
498
+ params.get("ytran")
499
+ ])
500
+ if params.get("xtran") is not None:
501
+ cargs.extend([
502
+ "-xtran",
503
+ params.get("xtran")
504
+ ])
505
+ if params.get("xaxis") is not None:
506
+ cargs.extend([
507
+ "-xaxis",
508
+ params.get("xaxis")
509
+ ])
510
+ if params.get("yaxis") is not None:
511
+ cargs.extend([
512
+ "-yaxis",
513
+ params.get("yaxis")
514
+ ])
515
+ if params.get("ynames") is not None:
516
+ cargs.extend([
517
+ "-ynames",
518
+ *params.get("ynames")
519
+ ])
520
+ if params.get("volreg"):
521
+ cargs.append("-volreg")
522
+ if params.get("THICK"):
523
+ cargs.append("-THICK")
524
+ if params.get("THICK_1"):
525
+ cargs.append("-THICK")
526
+ if params.get("dashed") is not None:
527
+ cargs.extend([
528
+ "-dashed",
529
+ params.get("dashed")
530
+ ])
531
+ if params.get("setenv") is not None:
532
+ cargs.extend([
533
+ "-D",
534
+ params.get("setenv")
535
+ ])
536
+ if params.get("censor_RGB") is not None:
537
+ cargs.extend([
538
+ "-censor_RGB",
539
+ params.get("censor_RGB")
540
+ ])
541
+ if params.get("censor") is not None:
542
+ cargs.extend([
543
+ "-censor",
544
+ execution.input_file(params.get("censor"))
545
+ ])
546
+ if params.get("CENSORTR") is not None:
547
+ cargs.extend([
548
+ "-CENSORTR",
549
+ *params.get("CENSORTR")
550
+ ])
551
+ if params.get("concat") is not None:
552
+ cargs.extend([
553
+ "-concat",
554
+ execution.input_file(params.get("concat"))
555
+ ])
556
+ if params.get("Rbox") is not None:
557
+ cargs.extend([
558
+ "-Rbox",
559
+ params.get("Rbox")
560
+ ])
561
+ if params.get("Rbox_1") is not None:
562
+ cargs.extend([
563
+ "-Rbox",
564
+ params.get("Rbox_1")
565
+ ])
566
+ if params.get("line") is not None:
567
+ cargs.extend([
568
+ "-line",
569
+ params.get("line")
570
+ ])
571
+ return cargs
572
+
573
+
574
+ def v_1dplot_outputs(
575
+ params: V1dplotParameters,
576
+ execution: Execution,
577
+ ) -> V1dplotOutputs:
578
+ """
579
+ Build outputs object containing output file paths and possibly stdout/stderr.
580
+
581
+ Args:
582
+ params: The parameters.
583
+ execution: The execution object for resolving input paths.
584
+ Returns:
585
+ Outputs object.
586
+ """
587
+ ret = V1dplotOutputs(
588
+ root=execution.output_file("."),
589
+ )
590
+ return ret
591
+
592
+
593
+ def v_1dplot_execute(
594
+ params: V1dplotParameters,
595
+ execution: Execution,
596
+ ) -> V1dplotOutputs:
597
+ """
598
+ Graphs the columns of a *.1D time series file to the X11 screen, or to an image
599
+ file (.jpg or .png).
600
+
601
+ Author: AFNI Developers
602
+
603
+ URL: https://afni.nimh.nih.gov/
604
+
605
+ Args:
606
+ params: The parameters.
607
+ execution: The execution object.
608
+ Returns:
609
+ NamedTuple of outputs (described in `V1dplotOutputs`).
610
+ """
611
+ params = execution.params(params)
612
+ cargs = v_1dplot_cargs(params, execution)
613
+ ret = v_1dplot_outputs(params, execution)
614
+ execution.run(cargs)
615
+ return ret
616
+
617
+
618
+ def v_1dplot(
619
+ tsfiles: list[InputPathType],
620
+ install: bool = False,
621
+ sep: bool = False,
622
+ one: bool = False,
623
+ sepscl: bool = False,
624
+ noline: bool = False,
625
+ noline_1: bool = False,
626
+ box: bool = False,
627
+ hist: bool = False,
628
+ norm2: bool = False,
629
+ normx: bool = False,
630
+ norm1: bool = False,
631
+ demean: bool = False,
632
+ x: InputPathType | None = None,
633
+ xl10: InputPathType | None = None,
634
+ dx: float | None = None,
635
+ xzero: float | None = None,
636
+ nopush: bool = False,
637
+ ignore: float | None = None,
638
+ use: float | None = None,
639
+ xlabel: str | None = None,
640
+ ylabel: str | None = None,
641
+ plabel: str | None = None,
642
+ title: str | None = None,
643
+ wintitle: str | None = None,
644
+ naked: bool = False,
645
+ aspect: float | None = None,
646
+ stdin: bool = False,
647
+ ps: bool = False,
648
+ jpg: str | None = None,
649
+ jpeg: str | None = None,
650
+ png: str | None = None,
651
+ pnm: str | None = None,
652
+ pngs: str | None = None,
653
+ jpgs: str | None = None,
654
+ jpegs: str | None = None,
655
+ pnms: str | None = None,
656
+ ytran: str | None = None,
657
+ xtran: str | None = None,
658
+ xaxis: str | None = None,
659
+ yaxis: str | None = None,
660
+ ynames: list[str] | None = None,
661
+ volreg: bool = False,
662
+ thick: bool = False,
663
+ thick_1: bool = False,
664
+ dashed: str | None = None,
665
+ setenv: str | None = None,
666
+ censor_rgb: str | None = None,
667
+ censor: InputPathType | None = None,
668
+ censortr: list[str] | None = None,
669
+ concat: InputPathType | None = None,
670
+ rbox: str | None = None,
671
+ rbox_1: str | None = None,
672
+ line: str | None = None,
673
+ runner: Runner | None = None,
674
+ ) -> V1dplotOutputs:
675
+ """
676
+ Graphs the columns of a *.1D time series file to the X11 screen, or to an image
677
+ file (.jpg or .png).
678
+
679
+ Author: AFNI Developers
680
+
681
+ URL: https://afni.nimh.nih.gov/
682
+
683
+ Args:
684
+ tsfiles: Input time series files (*.1D) to be plotted.
685
+ install: Install a new X11 colormap.
686
+ sep: Plot each column in a separate sub-graph.
687
+ one: Plot all columns together in one big graph.
688
+ sepscl: Plot each column in a separate sub-graph and allow each\
689
+ sub-graph to have a different y-scale. This option is meaningless with\
690
+ -one!.
691
+ noline: Same as -noline, but will not try to plot values outside the\
692
+ rectangular box that contains the graph axes.
693
+ noline_1: Same as -noline, but will not try to plot values outside the\
694
+ rectangular box that contains the graph axes.
695
+ box: Plot a small 'box' at each data point.
696
+ hist: Plot graphs in histogram style (i.e., vertical boxes).
697
+ norm2: Independently scale each time series plotted to have L_2 norm =\
698
+ 1 (sum of squares).
699
+ normx: Independently scale each time series plotted to have max\
700
+ absolute value = 1 (L_infinity norm).
701
+ norm1: Independently scale each time series plotted to have max sum of\
702
+ absolute values = 1 (L_1 norm).
703
+ demean: Remove the mean from each time series before normalizing.
704
+ x: Use for X axis the data in a specified .1D file.
705
+ xl10: Use log10 of the specified .1D file as the X axis.
706
+ dx: Spacing between points on the x-axis.
707
+ xzero: Initial x coordinate.
708
+ nopush: Don't 'push' axes ranges outwards.
709
+ ignore: Skip first 'nn' rows in the input file.
710
+ use: Plot 'mm' points.
711
+ xlabel: Put string 'aa' below the x-axis.
712
+ ylabel: Put string 'aa' to the left of the y-axis.
713
+ plabel: Put string 'pp' atop the plot.
714
+ title: Same as -plabel, but only works with -ps/-png/-jpg/-pnm options.
715
+ wintitle: Set string 'pp' as the title of the frame containing the\
716
+ plot.
717
+ naked: Do NOT plot axes or labels, just the graph(s).
718
+ aspect: Set the width-to-height ratio of the plot region to 'A'.
719
+ stdin: Don't read from tsfile; instead, read from stdin and plot it.
720
+ ps: Don't draw plot in a window; instead, write it to stdout in\
721
+ PostScript format.
722
+ jpg: Render plot to JPEG image and save to a file named 'fname'.
723
+ jpeg: Render plot to JPEG image and save to a file named 'fname'.
724
+ png: Render plot to PNG image and save to a file named 'fname'.
725
+ pnm: Render plot to PNM image and save to a file named 'fname'.
726
+ pngs: Render plot to PNG image of specified size and save to a file\
727
+ named 'fname'.
728
+ jpgs: Render plot to JPEG image of specified size and save to a file\
729
+ named 'fname'.
730
+ jpegs: Render plot to JPEG image of specified size and save to a file\
731
+ named 'fname'.
732
+ pnms: Render plot to PNM image of specified size and save to a file\
733
+ named 'fname'.
734
+ ytran: Transform the data along the y-axis by applying the expression\
735
+ to each input value.
736
+ xtran: Transform the data along the x-axis by applying the expression\
737
+ to each input value.
738
+ xaxis: Set the x-axis to run from value 'b' to value 't', with 'n'\
739
+ major divisions and 'm' minor tic marks per major division.
740
+ yaxis: Set the y-axis to run from value 'b' to value 't', with 'n'\
741
+ major divisions and 'm' minor tic marks per major division.
742
+ ynames: Use the strings as labels to the right of the graphs,\
743
+ corresponding to each input column.
744
+ volreg: Makes the 'ynames' be the same as the 6 labels used in\
745
+ plug_volreg for Roll, Pitch, Yaw, I-S, R-L, and A-P movements.
746
+ thick: Twice the power of '-thick' at no extra cost!.
747
+ thick_1: Twice the power of '-thick' at no extra cost!.
748
+ dashed: Plot dashed lines between data points using specified\
749
+ colon-separated list of dash values (1: solid, 2: longer dashes, 3:\
750
+ shorter dashes).
751
+ setenv: Set environment variable 'name' to 'val' for this run of the\
752
+ program only.
753
+ censor_rgb: Set the color used for marking to a specified color.
754
+ censor: Specify the filename of the censor .1D time series.
755
+ censortr: Specify time indexes to be marked in the graph(s).
756
+ concat: Specify the filename for the list of concatenated runs.
757
+ rbox: Draw a rectangular box with one extra horizontal line.
758
+ rbox_1: Draw a rectangular box with one extra horizontal line.
759
+ line: Draw one line segment.
760
+ runner: Command runner.
761
+ Returns:
762
+ NamedTuple of outputs (described in `V1dplotOutputs`).
763
+ """
764
+ runner = runner or get_global_runner()
765
+ execution = runner.start_execution(V_1DPLOT_METADATA)
766
+ params = v_1dplot_params(
767
+ tsfiles=tsfiles,
768
+ install=install,
769
+ sep=sep,
770
+ one=one,
771
+ sepscl=sepscl,
772
+ noline=noline,
773
+ noline_1=noline_1,
774
+ box=box,
775
+ hist=hist,
776
+ norm2=norm2,
777
+ normx=normx,
778
+ norm1=norm1,
779
+ demean=demean,
780
+ x=x,
781
+ xl10=xl10,
782
+ dx=dx,
783
+ xzero=xzero,
784
+ nopush=nopush,
785
+ ignore=ignore,
786
+ use=use,
787
+ xlabel=xlabel,
788
+ ylabel=ylabel,
789
+ plabel=plabel,
790
+ title=title,
791
+ wintitle=wintitle,
792
+ naked=naked,
793
+ aspect=aspect,
794
+ stdin=stdin,
795
+ ps=ps,
796
+ jpg=jpg,
797
+ jpeg=jpeg,
798
+ png=png,
799
+ pnm=pnm,
800
+ pngs=pngs,
801
+ jpgs=jpgs,
802
+ jpegs=jpegs,
803
+ pnms=pnms,
804
+ ytran=ytran,
805
+ xtran=xtran,
806
+ xaxis=xaxis,
807
+ yaxis=yaxis,
808
+ ynames=ynames,
809
+ volreg=volreg,
810
+ thick=thick,
811
+ thick_1=thick_1,
812
+ dashed=dashed,
813
+ setenv=setenv,
814
+ censor_rgb=censor_rgb,
815
+ censor=censor,
816
+ censortr=censortr,
817
+ concat=concat,
818
+ rbox=rbox,
819
+ rbox_1=rbox_1,
820
+ line=line,
821
+ )
822
+ return v_1dplot_execute(params, execution)
823
+
824
+
825
+ __all__ = [
826
+ "V1dplotOutputs",
827
+ "V1dplotParameters",
828
+ "V_1DPLOT_METADATA",
829
+ "v_1dplot",
830
+ "v_1dplot_params",
831
+ ]