nabu 2024.1.0rc4__py3-none-any.whl → 2024.1.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (2092) hide show
  1. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/doc/conf.py +137 -0
  2. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/doc/create_conf_doc.py +38 -0
  3. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/doc/get_mathjax.py +34 -0
  4. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/__init__.py +17 -0
  5. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/bootstrap.py +88 -0
  6. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/bootstrap_stitching.py +69 -0
  7. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/cast_volume.py +272 -0
  8. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/cli_configs.py +626 -0
  9. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/compare_volumes.py +94 -0
  10. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/composite_cor.py +144 -0
  11. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/correct_rot.py +70 -0
  12. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/create_distortion_map_from_poly.py +153 -0
  13. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/diag_to_pix.py +358 -0
  14. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/diag_to_rot.py +449 -0
  15. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/double_flatfield.py +143 -0
  16. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/generate_header.py +261 -0
  17. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/histogram.py +197 -0
  18. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/multicor.py +90 -0
  19. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/nx_z_splitter.py +125 -0
  20. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/parse_reconstruction_log.py +151 -0
  21. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/prepare_weights_double.py +163 -0
  22. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/reconstruct.py +120 -0
  23. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/reconstruct_helical.py +116 -0
  24. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/reduce_dark_flat.py +181 -0
  25. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/rotate.py +162 -0
  26. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/shrink_dataset.py +98 -0
  27. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/stitching.py +85 -0
  28. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/tests/test_reduce_dark_flat.py +78 -0
  29. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/utils.py +33 -0
  30. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/validator.py +110 -0
  31. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/__init__.py +0 -0
  32. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/convolution.py +8 -0
  33. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/fft.py +4 -0
  34. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/kernel.py +97 -0
  35. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/medfilt.py +6 -0
  36. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/padding.py +6 -0
  37. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/processing.py +75 -0
  38. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/tests/__init__.py +1 -0
  39. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/utils.py +331 -0
  40. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/__init__.py +12 -0
  41. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/alignment.py +578 -0
  42. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/cor.py +1621 -0
  43. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/cor_sino.py +183 -0
  44. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/distortion.py +112 -0
  45. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/focus.py +362 -0
  46. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/__init__.py +0 -0
  47. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/test_alignment.py +70 -0
  48. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/test_cor.py +472 -0
  49. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/test_focus.py +105 -0
  50. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/test_tilt.py +41 -0
  51. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/test_translation.py +78 -0
  52. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tilt.py +214 -0
  53. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/translation.py +193 -0
  54. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/utils.py +39 -0
  55. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/__init__.py +2 -0
  56. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/cast_volume.py +371 -0
  57. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/detector_distortion.py +305 -0
  58. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/reader.py +628 -0
  59. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/reader_helical.py +114 -0
  60. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/tests/__init__.py +0 -0
  61. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/tests/test_cast_volume.py +339 -0
  62. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/tests/test_detector_distortion.py +178 -0
  63. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/tests/test_writers.py +187 -0
  64. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/tiffwriter_zmm.py +99 -0
  65. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/utils.py +263 -0
  66. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/writer.py +892 -0
  67. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/__init__.py +0 -0
  68. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/binning.py +98 -0
  69. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/fftshift.py +6 -0
  70. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/filters.py +24 -0
  71. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/fourier_filters.py +152 -0
  72. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/histogram.py +6 -0
  73. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/histogram_cuda.py +8 -0
  74. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/kernel_base.py +4 -0
  75. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/padding.py +83 -0
  76. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/padding_base.py +6 -0
  77. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/processing_base.py +4 -0
  78. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/rotation.py +6 -0
  79. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/rotation_cuda.py +6 -0
  80. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/tests/__init__.py +1 -0
  81. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/tests/test_binning.py +48 -0
  82. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/tests/test_interpolation.py +70 -0
  83. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/transpose.py +6 -0
  84. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/unsharp.py +4 -0
  85. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/unsharp_cuda.py +6 -0
  86. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/unsharp_opencl.py +8 -0
  87. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/utils.py +117 -0
  88. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/__init__.py +0 -0
  89. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/fft.py +6 -0
  90. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/kernel.py +135 -0
  91. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/memcpy.py +35 -0
  92. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/padding.py +6 -0
  93. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/processing.py +62 -0
  94. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/tests/__init__.py +0 -0
  95. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/utils.py +292 -0
  96. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/__init__.py +0 -0
  97. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/config.py +265 -0
  98. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/config_validators.py +589 -0
  99. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/datadump.py +164 -0
  100. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/dataset_validator.py +211 -0
  101. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/detector_distortion_provider.py +20 -0
  102. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/estimators.py +1012 -0
  103. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fallback_utils.py +149 -0
  104. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/__init__.py +0 -0
  105. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/chunked.py +849 -0
  106. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/chunked_cuda.py +152 -0
  107. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/computations.py +260 -0
  108. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/dataset_validator.py +63 -0
  109. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/nabu_config.py +590 -0
  110. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/processconfig.py +825 -0
  111. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/reconstruction.py +851 -0
  112. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/__init__.py +0 -0
  113. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/dataset_validator.py +19 -0
  114. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/fbp.py +147 -0
  115. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/filtering.py +246 -0
  116. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/gridded_accumulator.py +575 -0
  117. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/helical_chunked_regridded.py +1670 -0
  118. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/helical_chunked_regridded_cuda.py +119 -0
  119. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/helical_reconstruction.py +598 -0
  120. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/helical_utils.py +42 -0
  121. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/nabu_config.py +175 -0
  122. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/processconfig.py +62 -0
  123. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/span_strategy.py +483 -0
  124. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/tests/__init__.py +0 -0
  125. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/tests/test_accumulator.py +157 -0
  126. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/tests/test_pipeline_elements_full.py +355 -0
  127. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/tests/test_strategy.py +61 -0
  128. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/utils.py +51 -0
  129. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/weight_balancer.py +101 -0
  130. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/params.py +163 -0
  131. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/processconfig.py +210 -0
  132. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/tests/test_chunk_reader.py +78 -0
  133. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/tests/test_estimators.py +149 -0
  134. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/utils.py +116 -0
  135. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/writer.py +193 -0
  136. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/xrdct/__init__.py +0 -0
  137. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/__init__.py +7 -0
  138. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/alignment.py +11 -0
  139. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/ccd.py +161 -0
  140. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/ccd_cuda.py +169 -0
  141. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/ctf.py +361 -0
  142. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/ctf_cuda.py +142 -0
  143. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/distortion.py +92 -0
  144. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/double_flatfield.py +212 -0
  145. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/double_flatfield_cuda.py +174 -0
  146. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/double_flatfield_variable_region.py +68 -0
  147. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/flatfield.py +448 -0
  148. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/flatfield_cuda.py +144 -0
  149. build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/flatfield_variable_region.py +79 -0
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  1981. build/lib/nabu/processing/__init__.py +0 -0
  1982. build/lib/nabu/processing/convolution_cuda.py +375 -0
  1983. build/lib/nabu/processing/fft_base.py +163 -0
  1984. build/lib/nabu/processing/fft_cuda.py +256 -0
  1985. build/lib/nabu/processing/fft_opencl.py +54 -0
  1986. build/lib/nabu/processing/fftshift.py +134 -0
  1987. build/lib/nabu/processing/histogram.py +286 -0
  1988. build/lib/nabu/processing/histogram_cuda.py +103 -0
  1989. build/lib/nabu/processing/kernel_base.py +126 -0
  1990. build/lib/nabu/processing/medfilt_cuda.py +159 -0
  1991. build/lib/nabu/processing/muladd.py +29 -0
  1992. build/lib/nabu/processing/muladd_cuda.py +68 -0
  1993. build/lib/nabu/processing/padding_base.py +71 -0
  1994. build/lib/nabu/processing/padding_cuda.py +75 -0
  1995. build/lib/nabu/processing/padding_opencl.py +77 -0
  1996. build/lib/nabu/processing/processing_base.py +123 -0
  1997. build/lib/nabu/processing/roll_opencl.py +64 -0
  1998. build/lib/nabu/processing/rotation.py +63 -0
  1999. build/lib/nabu/processing/rotation_cuda.py +66 -0
  2000. build/lib/nabu/processing/tests/__init__.py +0 -0
  2001. build/lib/nabu/processing/tests/test_fft.py +268 -0
  2002. build/lib/nabu/processing/tests/test_fftshift.py +71 -0
  2003. build/lib/nabu/processing/tests/test_histogram.py +55 -0
  2004. build/lib/nabu/processing/tests/test_medfilt.py +77 -0
  2005. build/lib/nabu/processing/tests/test_muladd.py +54 -0
  2006. build/lib/nabu/processing/tests/test_padding.py +247 -0
  2007. build/lib/nabu/processing/tests/test_roll.py +63 -0
  2008. build/lib/nabu/processing/tests/test_rotation.py +83 -0
  2009. build/lib/nabu/processing/tests/test_transpose.py +72 -0
  2010. build/lib/nabu/processing/tests/test_unsharp.py +106 -0
  2011. build/lib/nabu/processing/transpose.py +126 -0
  2012. build/lib/nabu/processing/unsharp.py +79 -0
  2013. build/lib/nabu/processing/unsharp_cuda.py +53 -0
  2014. build/lib/nabu/processing/unsharp_opencl.py +75 -0
  2015. build/lib/nabu/reconstruction/__init__.py +3 -0
  2016. build/lib/nabu/reconstruction/cone.py +241 -0
  2017. build/lib/nabu/reconstruction/fbp.py +124 -0
  2018. build/lib/nabu/reconstruction/fbp_base.py +391 -0
  2019. build/lib/nabu/reconstruction/fbp_opencl.py +78 -0
  2020. build/lib/nabu/reconstruction/filtering.py +220 -0
  2021. build/lib/nabu/reconstruction/filtering_cuda.py +103 -0
  2022. build/lib/nabu/reconstruction/filtering_opencl.py +111 -0
  2023. build/lib/nabu/reconstruction/projection.py +240 -0
  2024. build/lib/nabu/reconstruction/reconstructor.py +174 -0
  2025. build/lib/nabu/reconstruction/reconstructor_cuda.py +44 -0
  2026. build/lib/nabu/reconstruction/rings.py +248 -0
  2027. build/lib/nabu/reconstruction/rings_cuda.py +322 -0
  2028. build/lib/nabu/reconstruction/sinogram.py +467 -0
  2029. build/lib/nabu/reconstruction/sinogram_cuda.py +250 -0
  2030. build/lib/nabu/reconstruction/sinogram_opencl.py +40 -0
  2031. build/lib/nabu/reconstruction/tests/__init__.py +1 -0
  2032. build/lib/nabu/reconstruction/tests/test_cone.py +308 -0
  2033. build/lib/nabu/reconstruction/tests/test_deringer.py +220 -0
  2034. build/lib/nabu/reconstruction/tests/test_fbp.py +252 -0
  2035. build/lib/nabu/reconstruction/tests/test_filtering.py +133 -0
  2036. build/lib/nabu/reconstruction/tests/test_halftomo.py +100 -0
  2037. build/lib/nabu/reconstruction/tests/test_projector.py +164 -0
  2038. build/lib/nabu/reconstruction/tests/test_reconstructor.py +93 -0
  2039. build/lib/nabu/reconstruction/tests/test_sino_normalization.py +85 -0
  2040. build/lib/nabu/resources/__init__.py +0 -0
  2041. build/lib/nabu/resources/cli/__init__.py +0 -0
  2042. build/lib/nabu/resources/cor.py +5 -0
  2043. build/lib/nabu/resources/dataset_analyzer.py +469 -0
  2044. build/lib/nabu/resources/gpu.py +169 -0
  2045. build/lib/nabu/resources/logger.py +130 -0
  2046. build/lib/nabu/resources/nxflatfield.py +217 -0
  2047. build/lib/nabu/resources/templates/__init__.py +0 -0
  2048. build/lib/nabu/resources/tests/__init__.py +0 -0
  2049. build/lib/nabu/resources/tests/test_nxflatfield.py +104 -0
  2050. build/lib/nabu/resources/tests/test_units.py +47 -0
  2051. build/lib/nabu/resources/utils.py +174 -0
  2052. build/lib/nabu/stitching/__init__.py +0 -0
  2053. build/lib/nabu/stitching/alignment.py +184 -0
  2054. build/lib/nabu/stitching/config.py +1286 -0
  2055. build/lib/nabu/stitching/definitions.py +6 -0
  2056. build/lib/nabu/stitching/frame_composition.py +155 -0
  2057. build/lib/nabu/stitching/overlap.py +373 -0
  2058. build/lib/nabu/stitching/sample_normalization.py +60 -0
  2059. build/lib/nabu/stitching/slurm_utils.py +204 -0
  2060. build/lib/nabu/stitching/tests/__init__.py +0 -0
  2061. build/lib/nabu/stitching/tests/test_alignment.py +99 -0
  2062. build/lib/nabu/stitching/tests/test_config.py +226 -0
  2063. build/lib/nabu/stitching/tests/test_frame_composition.py +180 -0
  2064. build/lib/nabu/stitching/tests/test_overlap.py +98 -0
  2065. build/lib/nabu/stitching/tests/test_sample_normalization.py +49 -0
  2066. build/lib/nabu/stitching/tests/test_slurm_utils.py +146 -0
  2067. build/lib/nabu/stitching/tests/test_utils.py +21 -0
  2068. build/lib/nabu/stitching/tests/test_z_stitching.py +1183 -0
  2069. build/lib/nabu/stitching/utils.py +563 -0
  2070. build/lib/nabu/stitching/z_stitching.py +2279 -0
  2071. build/lib/nabu/tests.py +51 -0
  2072. build/lib/nabu/testutils.py +375 -0
  2073. build/lib/nabu/thirdparty/__init__.py +0 -0
  2074. build/lib/nabu/thirdparty/algotom_convert_sino.py +276 -0
  2075. build/lib/nabu/thirdparty/pore3d_deringer_munch.py +108 -0
  2076. build/lib/nabu/thirdparty/tomocupy_remove_stripe.py +586 -0
  2077. build/lib/nabu/thirdparty/tomopy_phase.py +239 -0
  2078. build/lib/nabu/thirdparty/tomwer_load_flats_darks.py +162 -0
  2079. build/lib/nabu/utils.py +836 -0
  2080. nabu/__init__.py +1 -1
  2081. nabu/io/cast_volume.py +10 -2
  2082. nabu/stitching/config.py +2 -2
  2083. nabu/stitching/z_stitching.py +3 -1
  2084. {nabu-2024.1.0rc4.dist-info → nabu-2024.1.1.dist-info}/METADATA +1 -1
  2085. nabu-2024.1.1.dist-info/RECORD +2375 -0
  2086. {nabu-2024.1.0rc4.dist-info → nabu-2024.1.1.dist-info}/WHEEL +1 -1
  2087. nabu-2024.1.1.dist-info/top_level.txt +4 -0
  2088. nabu-2024.1.0rc4.dist-info/RECORD +0 -296
  2089. nabu-2024.1.0rc4.dist-info/top_level.txt +0 -2
  2090. {nabu/app/tests → build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app}/__init__.py +0 -0
  2091. {nabu-2024.1.0rc4.dist-info → nabu-2024.1.1.dist-info}/LICENSE +0 -0
  2092. {nabu-2024.1.0rc4.dist-info → nabu-2024.1.1.dist-info}/entry_points.txt +0 -0
nabu-2024.1.1.dist-info/RECORD ADDED
@@ -0,0 +1,2375 @@
1
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/doc/conf.py,sha256=3xtCarCHrXPr50GbeRDuH-o3Jzojw7mpr7vpGfZPLAE,3787
2
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/doc/create_conf_doc.py,sha256=IVOdP70KvbW9WS_UQu3Iyd0YfS60E2fJ5IDtQ_s4cDw,1143
3
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/doc/get_mathjax.py,sha256=VIvKRCdDuF2VoY8JD3mSey9XX13AZMmwTJBHdt1tUs4,1012
4
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/__init__.py,sha256=gq8vx2Om1poBVLgZqeFG89T2YfHDAq9eZaZILnH0oDo,270
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/testutils.py,sha256=qqtGgkIhpOpXhgeoXlqCb91Rx-JlI4ALaDF6nt8YRRk,13298
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/bootstrap.py,sha256=UQZzCBKtSXtQp5U0aXtlUhbjbwzgILTI4zD4zVffhBI,3246
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/cli_configs.py,sha256=FBh9bG80oY0fwfOntmgqgumS5i120_r60tCsj_mcdvE,22109
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/compare_volumes.py,sha256=Mu5O4uP-ANo-el-fE5PLvEq42BTk5FkrscaFRyQZdis,3341
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/create_distortion_map_from_poly.py,sha256=5knKx0VLyj-s1ObGwQWlh_ml_Uz4J8jvVBsU9EypLOw,6199
17
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/diag_to_pix.py,sha256=iSB9gJ5t45Rf025a0yx3Wom9yYRIlvsO8yPvSv5R6MY,15217
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/diag_to_rot.py,sha256=86lqINSN4SoQ0Eqf0fGYCw-eAhBHm8ds7TDWtLNE6Cg,17111
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/parse_reconstruction_log.py,sha256=9eiJftCkyNvtZmTDjeOuKgu3a9Fe4KzJcfcI_ZdDlUM,4586
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26
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/reconstruct.py,sha256=Lt3Qu11p_eaq4U6tMfQOw-gRSfGhgFwPms2LkjbZaWY,3968
27
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/rotate.py,sha256=Rj8W7UDZHS4FLgMsGq4xvHfOujWJsyVexn-NOg3Gja0,6445
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/stitching.py,sha256=Ibp1oVokLVMz-VX762j1C0E88Di0YJvRt-b8NjGoe7g,3310
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/utils.py,sha256=XUBRWDmth4i3BZHd27rfarFAUP7OEcsMeVmDJ6T4EXA,1178
33
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34
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/tests/test_reduce_dark_flat.py,sha256=T-_zyzD0-f2c5Z-tlzmRF5p3vPtyL2RFb-D5fIYYEoM,2641
35
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
36
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/convolution.py,sha256=n8KsJ7IZdPOs_K5QZC6qblnOvIKYwxtdt03oNa0GiMU,241
37
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38
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39
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40
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41
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42
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44
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/__init__.py,sha256=HWE3ivArjlJx4FjFh2Q73VmpIyzod80KTmXvFo1AP1s,379
45
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47
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48
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49
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50
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51
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52
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/utils.py,sha256=m1dYxyU1uSmyjRkPDhfXFzZ_o2mw8X2ApmvCC1MsvlQ,1401
53
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57
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58
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93
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148
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149
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150
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160
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169
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176
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181
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184
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185
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186
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187
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188
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189
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190
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191
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192
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193
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194
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195
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196
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197
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198
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199
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200
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202
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203
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209
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210
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212
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213
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214
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215
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218
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220
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221
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222
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223
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224
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225
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229
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230
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232
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233
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234
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237
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255
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256
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260
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262
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263
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273
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274
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276
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286
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294
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296
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300
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301
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310
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314
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317
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318
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332
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353
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354
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355
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356
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357
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358
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360
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373
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377
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380
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381
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383
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392
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395
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403
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426
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427
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430
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431
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434
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436
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437
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438
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439
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440
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441
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442
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444
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445
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446
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447
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448
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449
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450
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451
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452
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453
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454
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455
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456
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457
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458
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459
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460
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461
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462
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463
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464
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465
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466
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467
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468
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469
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470
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471
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472
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473
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474
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475
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476
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477
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478
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479
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480
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481
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482
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483
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484
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485
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486
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487
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489
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490
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492
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493
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494
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496
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497
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501
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507
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511
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512
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516
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517
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520
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521
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522
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523
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525
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526
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529
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530
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532
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533
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534
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535
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536
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539
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540
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541
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542
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544
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546
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547
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548
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549
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550
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551
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552
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553
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554
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555
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556
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557
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558
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559
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560
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561
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562
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563
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564
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565
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566
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567
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568
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569
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570
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571
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572
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574
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575
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576
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577
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578
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583
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584
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588
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591
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592
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599
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600
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601
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613
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619
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620
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/datadump.py,sha256=Ua4tbzxfGMOiT2-7WZn3IDiJqzzK-TyFuku_XUkH8_Q,6520
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628
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633
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635
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636
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/dataset_validator.py,sha256=sRgUECUc8aOjFbwrW-dHjvIf7K3T40YPSIgt3cInKAc,3055
637
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638
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639
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640
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641
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642
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643
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644
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645
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646
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647
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648
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649
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650
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652
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653
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654
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655
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657
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658
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659
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660
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661
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663
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/ccd_cuda.py,sha256=G9BWM2BJop8On3QWFkENZwFccNUss0ES3v931emL3RQ,6068
665
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+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/ctf_cuda.py,sha256=UAWPDbDboMJcSs5BLRmBp6cY8Wq7lmVmWn_F4-3QAiw,5245
667
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670
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/double_flatfield_variable_region.py,sha256=9NnI_MoY2mhjp1ifpfhTq5slkDhgoK-bMznkW6xRU_4,2279
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672
+ build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/flatfield_cuda.py,sha256=AFStTXZifDA4SGgtrIQz-rcnR1NvSXx8a-dC8Yrr7HE,5331
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674
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682
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685
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686
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688
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689
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690
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696
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701
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706
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710
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714
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715
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717
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852
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859
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873
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880
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921
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923
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924
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925
+ build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/ctf.py,sha256=xyTfmN8Nr6Rh9EXy1c1PIpC0zfzViFnytxjLaDrArn0,14657
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928
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929
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930
+ build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/double_flatfield_variable_region.py,sha256=9NnI_MoY2mhjp1ifpfhTq5slkDhgoK-bMznkW6xRU_4,2279
931
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932
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933
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934
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936
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937
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938
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939
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940
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941
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942
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944
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945
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946
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949
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950
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951
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953
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954
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956
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957
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958
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959
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960
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961
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962
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964
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965
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967
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968
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969
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970
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971
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972
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973
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974
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975
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976
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977
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979
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982
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985
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989
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996
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999
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1000
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1001
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1002
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1004
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1005
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1009
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1012
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1013
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1014
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1016
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1017
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1024
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1025
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1026
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1027
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1028
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1029
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1030
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1031
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1032
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1033
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1034
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1035
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1036
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1037
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1038
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1039
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1040
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1042
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1043
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1044
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1046
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1048
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1049
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1050
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1051
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1053
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1054
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1055
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1056
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1057
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1058
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1059
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1060
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1061
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1062
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1063
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1064
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1065
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1066
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1067
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1068
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1069
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1070
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1071
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1072
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1073
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1074
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1075
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1076
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1077
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1081
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1082
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1090
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1094
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1095
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1096
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1097
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1098
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1103
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1105
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1108
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1112
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1119
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1120
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1133
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1134
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1135
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1136
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1137
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1138
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1139
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1140
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1141
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1142
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1143
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1144
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1145
+ build/lib/build/lib/build/lib/build/lib/nabu/pipeline/detector_distortion_provider.py,sha256=ru1AxbcuO-FA8FYooPBWgp1lzdSDUtzFUC1A_sS8jME,920
1146
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1147
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1148
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1149
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1150
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1151
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1152
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1153
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1154
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1155
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1156
+ build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/dataset_validator.py,sha256=sRgUECUc8aOjFbwrW-dHjvIf7K3T40YPSIgt3cInKAc,3055
1157
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1158
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1159
+ build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/reconstruction.py,sha256=Km_ZDtoiDQdX3TdTh6E9bzS5hoMC0jYU5eZWodaLbIg,36627
1160
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1161
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1162
+ build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/fbp.py,sha256=0fAz-Fb0Rn_FzellvcS2cy-Wvm-5dxEf494YFt4pLws,5845
1163
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1164
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1165
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1166
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1167
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1168
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1169
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1170
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1171
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1172
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1173
+ build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/weight_balancer.py,sha256=j0TGe50tbbsilQvml9CgMxeSy83CNaifHj-xuMGl8uE,3981
1174
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1175
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1176
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1177
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1178
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1179
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1180
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1181
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1182
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1183
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1184
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1185
+ build/lib/build/lib/build/lib/build/lib/nabu/preproc/ctf.py,sha256=xyTfmN8Nr6Rh9EXy1c1PIpC0zfzViFnytxjLaDrArn0,14657
1186
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1187
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1188
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1189
+ build/lib/build/lib/build/lib/build/lib/nabu/preproc/double_flatfield_cuda.py,sha256=67DZWa0q4ham6d21QGeiSY-kgkkJETN0YxjgcBlpncs,6153
1190
+ build/lib/build/lib/build/lib/build/lib/nabu/preproc/double_flatfield_variable_region.py,sha256=9NnI_MoY2mhjp1ifpfhTq5slkDhgoK-bMznkW6xRU_4,2279
1191
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1192
+ build/lib/build/lib/build/lib/build/lib/nabu/preproc/flatfield_cuda.py,sha256=AFStTXZifDA4SGgtrIQz-rcnR1NvSXx8a-dC8Yrr7HE,5331
1193
+ build/lib/build/lib/build/lib/build/lib/nabu/preproc/flatfield_variable_region.py,sha256=JnIn_hkt2YQdREIkEnMSF4B16JcrmtS6jLfUiBS97B4,3155
1194
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1195
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1196
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1197
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1198
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1199
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1200
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1201
+ build/lib/build/lib/build/lib/build/lib/nabu/preproc/tests/test_double_flatfield.py,sha256=HZ5KxY3xGplTzRTFKiFyqAhIjyl4mSrbHRzYTnMr4HA,2873
1202
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1203
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1204
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1205
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1206
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1207
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1208
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1209
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1210
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1211
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1213
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1214
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1215
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1216
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1217
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1218
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1219
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1220
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1221
+ build/lib/build/lib/build/lib/build/lib/nabu/processing/roll_opencl.py,sha256=0R6ff8sncuRC7K8gPdjhmIyC2d83iL3pTvmXf5b-6io,2263
1222
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1224
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1225
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1228
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1229
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1230
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1231
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1232
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1233
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1234
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1235
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1236
+ build/lib/build/lib/build/lib/build/lib/nabu/processing/tests/test_rotation.py,sha256=vedRXV9RePJywBKoyBkGANP1dhZCjphbYOhdnsBDQtE,2737
1237
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1238
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1239
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1240
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1242
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1243
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1244
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1245
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1246
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1247
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1248
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1249
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1250
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1251
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1252
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1253
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1254
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1257
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1258
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1259
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1260
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1261
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1262
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1263
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1265
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1269
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1272
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1273
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1274
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1276
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1283
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1286
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1287
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1288
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1289
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1290
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1291
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1292
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1296
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1309
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1324
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1327
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1336
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1393
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1400
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1401
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1413
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1421
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1432
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1433
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1435
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1467
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1468
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1469
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1470
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1471
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1473
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1474
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1477
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1478
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1479
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1480
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1481
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1484
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1485
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1486
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1487
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1489
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1490
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1491
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1492
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1493
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1494
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1495
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1496
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1497
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1498
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1502
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1503
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1504
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1505
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1506
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1507
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1509
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1510
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1511
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1512
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1517
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1518
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1519
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1520
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1521
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1522
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1523
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1524
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1525
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1532
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1533
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1534
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1537
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1547
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1548
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1550
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1961
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1967
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1968
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1969
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1972
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1974
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1980
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1981
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1982
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1983
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1985
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1987
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1989
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1990
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1997
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1998
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2000
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2001
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2002
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2004
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2006
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2008
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2014
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2015
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2016
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2017
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2018
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2019
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2020
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2021
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2022
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2023
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2024
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2025
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2029
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2030
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+ nabu/stitching/tests/test_utils.py,sha256=CjV0vPvXEchJ5vo6o7hGQA-PsOOAyAamuQ6fiHKCQ9M,641
2363
+ nabu/stitching/tests/test_z_stitching.py,sha256=1bNvNkWDqV4mE5tgHBKqshDnoJtMPzUS2xCkf9qd2XM,42620
2364
+ nabu/thirdparty/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
2365
+ nabu/thirdparty/algotom_convert_sino.py,sha256=iZVRilvyqMyLTu8RKgbqDFUjObWW5X69rCARrnNizuI,13872
2366
+ nabu/thirdparty/pore3d_deringer_munch.py,sha256=o4bisnFc-wMjuohWBT8wgWmfNehPQGtCl6G2NebJlbg,4500
2367
+ nabu/thirdparty/tomocupy_remove_stripe.py,sha256=VgXHr2tzTAAGZix5pwhFfbPxj4tt3yXBcjCPNQSLPAg,22810
2368
+ nabu/thirdparty/tomopy_phase.py,sha256=hK4oPpkogLOhv23XzzEXQY2u3r8fJvASY_bINVs6ERE,8634
2369
+ nabu/thirdparty/tomwer_load_flats_darks.py,sha256=ZNoVAinUb_wGYbfvs_4BVnWsjsQmNxSvCh1bWhR2WWg,5611
2370
+ nabu-2024.1.1.dist-info/LICENSE,sha256=1eAIPSnEsnSFNUODnLtNtQTs76exG3ZxJ1DJR6zoUBA,1066
2371
+ nabu-2024.1.1.dist-info/METADATA,sha256=UbyOkwl_rp8BzlpC0RSZ1TpKZoB-32Inl5alx_c3Y4Y,5226
2372
+ nabu-2024.1.1.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
2373
+ nabu-2024.1.1.dist-info/entry_points.txt,sha256=cJKGkBeykVL7uK3E4R0RLRqMXifTL2qdO573syPAvJc,1288
2374
+ nabu-2024.1.1.dist-info/top_level.txt,sha256=FvFTuGTu5SgAY7xdjtkAkq-eVCQ1xQTcBPMuUDA1K34,20
2375
+ nabu-2024.1.1.dist-info/RECORD,,