multipers 2.2.3__cp312-cp312-win_amd64.whl → 2.3.1__cp312-cp312-win_amd64.whl

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Files changed (182) hide show
  1. multipers/__init__.py +33 -31
  2. multipers/_signed_measure_meta.py +430 -430
  3. multipers/_slicer_meta.py +211 -212
  4. multipers/data/MOL2.py +458 -458
  5. multipers/data/UCR.py +18 -18
  6. multipers/data/graphs.py +466 -466
  7. multipers/data/immuno_regions.py +27 -27
  8. multipers/data/pytorch2simplextree.py +90 -90
  9. multipers/data/shape3d.py +101 -101
  10. multipers/data/synthetic.py +113 -111
  11. multipers/distances.py +198 -198
  12. multipers/filtration_conversions.pxd.tp +84 -84
  13. multipers/filtrations/__init__.py +18 -0
  14. multipers/{ml/convolutions.py → filtrations/density.py} +563 -520
  15. multipers/filtrations/filtrations.py +289 -0
  16. multipers/filtrations.pxd +224 -224
  17. multipers/function_rips.cp312-win_amd64.pyd +0 -0
  18. multipers/function_rips.pyx +105 -105
  19. multipers/grids.cp312-win_amd64.pyd +0 -0
  20. multipers/grids.pyx +350 -350
  21. multipers/gudhi/Persistence_slices_interface.h +132 -132
  22. multipers/gudhi/Simplex_tree_interface.h +239 -245
  23. multipers/gudhi/Simplex_tree_multi_interface.h +516 -561
  24. multipers/gudhi/cubical_to_boundary.h +59 -59
  25. multipers/gudhi/gudhi/Bitmap_cubical_complex.h +450 -450
  26. multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +1070 -1070
  27. multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +579 -579
  28. multipers/gudhi/gudhi/Debug_utils.h +45 -45
  29. multipers/gudhi/gudhi/Fields/Multi_field.h +484 -484
  30. multipers/gudhi/gudhi/Fields/Multi_field_operators.h +455 -455
  31. multipers/gudhi/gudhi/Fields/Multi_field_shared.h +450 -450
  32. multipers/gudhi/gudhi/Fields/Multi_field_small.h +531 -531
  33. multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +507 -507
  34. multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +531 -531
  35. multipers/gudhi/gudhi/Fields/Z2_field.h +355 -355
  36. multipers/gudhi/gudhi/Fields/Z2_field_operators.h +376 -376
  37. multipers/gudhi/gudhi/Fields/Zp_field.h +420 -420
  38. multipers/gudhi/gudhi/Fields/Zp_field_operators.h +400 -400
  39. multipers/gudhi/gudhi/Fields/Zp_field_shared.h +418 -418
  40. multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +337 -337
  41. multipers/gudhi/gudhi/Matrix.h +2107 -2107
  42. multipers/gudhi/gudhi/Multi_critical_filtration.h +1038 -1038
  43. multipers/gudhi/gudhi/Multi_persistence/Box.h +171 -171
  44. multipers/gudhi/gudhi/Multi_persistence/Line.h +282 -282
  45. multipers/gudhi/gudhi/Off_reader.h +173 -173
  46. multipers/gudhi/gudhi/One_critical_filtration.h +1433 -1431
  47. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +769 -769
  48. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +686 -686
  49. multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +842 -842
  50. multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +1350 -1350
  51. multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +1105 -1105
  52. multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +859 -859
  53. multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +910 -910
  54. multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +139 -139
  55. multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +230 -230
  56. multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +211 -211
  57. multipers/gudhi/gudhi/Persistence_matrix/boundary_cell_position_to_id_mapper.h +60 -60
  58. multipers/gudhi/gudhi/Persistence_matrix/boundary_face_position_to_id_mapper.h +60 -60
  59. multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +136 -136
  60. multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +190 -190
  61. multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +616 -616
  62. multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +150 -150
  63. multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +106 -106
  64. multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +219 -219
  65. multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +327 -327
  66. multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +1140 -1140
  67. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +934 -934
  68. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +934 -934
  69. multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +980 -980
  70. multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +1092 -1092
  71. multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +192 -192
  72. multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +921 -921
  73. multipers/gudhi/gudhi/Persistence_matrix/columns/small_vector_column.h +1093 -1093
  74. multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +1012 -1012
  75. multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +1244 -1244
  76. multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +186 -186
  77. multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +164 -164
  78. multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +156 -156
  79. multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +376 -376
  80. multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +540 -540
  81. multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +118 -118
  82. multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +173 -173
  83. multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +128 -128
  84. multipers/gudhi/gudhi/Persistent_cohomology.h +745 -745
  85. multipers/gudhi/gudhi/Points_off_io.h +171 -171
  86. multipers/gudhi/gudhi/Simple_object_pool.h +69 -69
  87. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +463 -463
  88. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +83 -83
  89. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +106 -106
  90. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +277 -277
  91. multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +62 -62
  92. multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +27 -27
  93. multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +62 -62
  94. multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +157 -157
  95. multipers/gudhi/gudhi/Simplex_tree.h +2794 -2794
  96. multipers/gudhi/gudhi/Simplex_tree_multi.h +152 -163
  97. multipers/gudhi/gudhi/distance_functions.h +62 -62
  98. multipers/gudhi/gudhi/graph_simplicial_complex.h +104 -104
  99. multipers/gudhi/gudhi/persistence_interval.h +253 -253
  100. multipers/gudhi/gudhi/persistence_matrix_options.h +170 -170
  101. multipers/gudhi/gudhi/reader_utils.h +367 -367
  102. multipers/gudhi/mma_interface_coh.h +256 -255
  103. multipers/gudhi/mma_interface_h0.h +223 -231
  104. multipers/gudhi/mma_interface_matrix.h +291 -282
  105. multipers/gudhi/naive_merge_tree.h +536 -575
  106. multipers/gudhi/scc_io.h +310 -289
  107. multipers/gudhi/truc.h +957 -888
  108. multipers/io.cp312-win_amd64.pyd +0 -0
  109. multipers/io.pyx +714 -711
  110. multipers/ml/accuracies.py +90 -90
  111. multipers/ml/invariants_with_persistable.py +79 -79
  112. multipers/ml/kernels.py +176 -176
  113. multipers/ml/mma.py +713 -714
  114. multipers/ml/one.py +472 -472
  115. multipers/ml/point_clouds.py +352 -346
  116. multipers/ml/signed_measures.py +1589 -1589
  117. multipers/ml/sliced_wasserstein.py +461 -461
  118. multipers/ml/tools.py +113 -113
  119. multipers/mma_structures.cp312-win_amd64.pyd +0 -0
  120. multipers/mma_structures.pxd +127 -127
  121. multipers/mma_structures.pyx +4 -8
  122. multipers/mma_structures.pyx.tp +1083 -1085
  123. multipers/multi_parameter_rank_invariant/diff_helpers.h +84 -93
  124. multipers/multi_parameter_rank_invariant/euler_characteristic.h +97 -97
  125. multipers/multi_parameter_rank_invariant/function_rips.h +322 -322
  126. multipers/multi_parameter_rank_invariant/hilbert_function.h +769 -769
  127. multipers/multi_parameter_rank_invariant/persistence_slices.h +148 -148
  128. multipers/multi_parameter_rank_invariant/rank_invariant.h +369 -369
  129. multipers/multiparameter_edge_collapse.py +41 -41
  130. multipers/multiparameter_module_approximation/approximation.h +2298 -2295
  131. multipers/multiparameter_module_approximation/combinatory.h +129 -129
  132. multipers/multiparameter_module_approximation/debug.h +107 -107
  133. multipers/multiparameter_module_approximation/format_python-cpp.h +286 -286
  134. multipers/multiparameter_module_approximation/heap_column.h +238 -238
  135. multipers/multiparameter_module_approximation/images.h +79 -79
  136. multipers/multiparameter_module_approximation/list_column.h +174 -174
  137. multipers/multiparameter_module_approximation/list_column_2.h +232 -232
  138. multipers/multiparameter_module_approximation/ru_matrix.h +347 -347
  139. multipers/multiparameter_module_approximation/set_column.h +135 -135
  140. multipers/multiparameter_module_approximation/structure_higher_dim_barcode.h +36 -36
  141. multipers/multiparameter_module_approximation/unordered_set_column.h +166 -166
  142. multipers/multiparameter_module_approximation/utilities.h +403 -419
  143. multipers/multiparameter_module_approximation/vector_column.h +223 -223
  144. multipers/multiparameter_module_approximation/vector_matrix.h +331 -331
  145. multipers/multiparameter_module_approximation/vineyards.h +464 -464
  146. multipers/multiparameter_module_approximation/vineyards_trajectories.h +649 -649
  147. multipers/multiparameter_module_approximation.cp312-win_amd64.pyd +0 -0
  148. multipers/multiparameter_module_approximation.pyx +218 -217
  149. multipers/pickle.py +90 -53
  150. multipers/plots.py +342 -334
  151. multipers/point_measure.cp312-win_amd64.pyd +0 -0
  152. multipers/point_measure.pyx +322 -320
  153. multipers/simplex_tree_multi.cp312-win_amd64.pyd +0 -0
  154. multipers/simplex_tree_multi.pxd +133 -133
  155. multipers/simplex_tree_multi.pyx +115 -48
  156. multipers/simplex_tree_multi.pyx.tp +1947 -1935
  157. multipers/slicer.cp312-win_amd64.pyd +0 -0
  158. multipers/slicer.pxd +281 -100
  159. multipers/slicer.pxd.tp +218 -214
  160. multipers/slicer.pyx +1570 -507
  161. multipers/slicer.pyx.tp +931 -914
  162. multipers/tensor/tensor.h +672 -672
  163. multipers/tensor.pxd +13 -13
  164. multipers/test.pyx +44 -44
  165. multipers/tests/__init__.py +57 -57
  166. multipers/torch/diff_grids.py +217 -217
  167. multipers/torch/rips_density.py +310 -304
  168. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/LICENSE +21 -21
  169. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/METADATA +21 -11
  170. multipers-2.3.1.dist-info/RECORD +182 -0
  171. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/WHEEL +1 -1
  172. multipers/tests/test_diff_helper.py +0 -73
  173. multipers/tests/test_hilbert_function.py +0 -82
  174. multipers/tests/test_mma.py +0 -83
  175. multipers/tests/test_point_clouds.py +0 -49
  176. multipers/tests/test_python-cpp_conversion.py +0 -82
  177. multipers/tests/test_signed_betti.py +0 -181
  178. multipers/tests/test_signed_measure.py +0 -89
  179. multipers/tests/test_simplextreemulti.py +0 -221
  180. multipers/tests/test_slicer.py +0 -221
  181. multipers-2.2.3.dist-info/RECORD +0 -189
  182. {multipers-2.2.3.dist-info → multipers-2.3.1.dist-info}/top_level.txt +0 -0
multipers/filtrations.pxd CHANGED
@@ -1,224 +1,224 @@
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- from libcpp.utility cimport pair
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- from libcpp cimport bool
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- from libcpp.vector cimport vector
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- from libcpp cimport tuple
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- from libc.stdint cimport uintptr_t,intptr_t
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- from cpython cimport Py_buffer
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-
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-
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- cdef extern from "gudhi/One_critical_filtration.h" namespace "Gudhi::multi_filtration":
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- cdef cppclass One_critical_filtration[T=*]:
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- ## Copied from cython vector
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- ctypedef size_t size_type
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- ctypedef ptrdiff_t difference_type
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- ctypedef T value_type
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-
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- cppclass const_iterator
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- cppclass iterator:
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- iterator() except +
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- iterator(iterator&) except +
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- value_type& operator*()
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- iterator operator++()
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- iterator operator--()
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- iterator operator++(int)
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- iterator operator--(int)
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- iterator operator+(size_type)
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- iterator operator-(size_type)
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- difference_type operator-(iterator)
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- difference_type operator-(const_iterator)
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- bint operator==(iterator)
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- bint operator==(const_iterator)
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- bint operator!=(iterator)
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- bint operator!=(const_iterator)
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- bint operator<(iterator)
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- bint operator<(const_iterator)
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- bint operator>(iterator)
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- bint operator>(const_iterator)
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- bint operator<=(iterator)
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- bint operator<=(const_iterator)
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- bint operator>=(iterator)
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- bint operator>=(const_iterator)
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- cppclass const_iterator:
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- const_iterator() except +
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- const_iterator(iterator&) except +
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- const_iterator(const_iterator&) except +
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- operator=(iterator&) except +
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- const value_type& operator*()
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- const_iterator operator++()
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- const_iterator operator--()
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- const_iterator operator++(int)
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- const_iterator operator--(int)
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- const_iterator operator+(size_type)
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- const_iterator operator-(size_type)
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- difference_type operator-(iterator)
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- difference_type operator-(const_iterator)
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- bint operator==(iterator)
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- bint operator==(const_iterator)
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- bint operator!=(iterator)
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- bint operator!=(const_iterator)
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- bint operator<(iterator)
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- bint operator<(const_iterator)
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- bint operator>(iterator)
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- bint operator>(const_iterator)
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- bint operator<=(iterator)
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- bint operator<=(const_iterator)
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- bint operator>=(iterator)
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- bint operator>=(const_iterator)
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-
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- cppclass const_reverse_iterator
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- cppclass reverse_iterator:
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- reverse_iterator() except +
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- reverse_iterator(reverse_iterator&) except +
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- value_type& operator*()
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- reverse_iterator operator++()
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- reverse_iterator operator--()
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- reverse_iterator operator++(int)
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- reverse_iterator operator--(int)
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- reverse_iterator operator+(size_type)
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- reverse_iterator operator-(size_type)
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- difference_type operator-(iterator)
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- difference_type operator-(const_iterator)
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- bint operator==(reverse_iterator)
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- bint operator==(const_reverse_iterator)
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- bint operator!=(reverse_iterator)
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- bint operator!=(const_reverse_iterator)
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- bint operator<(reverse_iterator)
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- bint operator<(const_reverse_iterator)
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- bint operator>(reverse_iterator)
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- bint operator>(const_reverse_iterator)
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- bint operator<=(reverse_iterator)
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- bint operator<=(const_reverse_iterator)
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- bint operator>=(reverse_iterator)
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- bint operator>=(const_reverse_iterator)
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- cppclass const_reverse_iterator:
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- const_reverse_iterator() except +
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- const_reverse_iterator(reverse_iterator&) except +
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- operator=(reverse_iterator&) except +
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- const value_type& operator*()
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- const_reverse_iterator operator++()
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- const_reverse_iterator operator--()
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- const_reverse_iterator operator++(int)
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- const_reverse_iterator operator--(int)
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- const_reverse_iterator operator+(size_type)
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- const_reverse_iterator operator-(size_type)
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- difference_type operator-(iterator)
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- difference_type operator-(const_iterator)
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- bint operator==(reverse_iterator)
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- bint operator==(const_reverse_iterator)
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- bint operator!=(reverse_iterator)
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- bint operator!=(const_reverse_iterator)
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- bint operator<(reverse_iterator)
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- bint operator<(const_reverse_iterator)
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- bint operator>(reverse_iterator)
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- bint operator>(const_reverse_iterator)
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- bint operator<=(reverse_iterator)
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- bint operator<=(const_reverse_iterator)
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- bint operator>=(reverse_iterator)
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- bint operator>=(const_reverse_iterator)
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- value_type& operator[](size_type)
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- #vector& operator=(vector&)
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- void assign(size_type, const value_type&)
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- void assign[InputIt](InputIt, InputIt) except +
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- value_type& at(size_type) except +
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- value_type& back()
124
- iterator begin()
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- const_iterator const_begin "begin"()
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- const_iterator cbegin()
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- size_type capacity()
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- void clear() nogil
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- bint empty() nogil
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- iterator end()
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- const_iterator const_end "end"()
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- const_iterator cend()
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- iterator erase(iterator)
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- iterator erase(iterator, iterator)
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- value_type& front()
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- iterator insert(iterator, const value_type&) except +
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- iterator insert(iterator, size_type, const value_type&) except +
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- iterator insert[InputIt](iterator, InputIt, InputIt) except +
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- size_type max_size()
140
- void pop_back()
141
- void push_back(value_type&) except + nogil
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- reverse_iterator rbegin()
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- const_reverse_iterator const_rbegin "rbegin"()
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- const_reverse_iterator crbegin()
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- reverse_iterator rend()
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- const_reverse_iterator const_rend "rend"()
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- const_reverse_iterator crend()
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- void reserve(size_type) except + nogil
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- void resize(size_type) except + nogil
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- void resize(size_type, value_type&) except +
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- # size_type size()
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- size_type num_parameters() nogil
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- size_type num_generators() nogil
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- void swap(vector&)
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-
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- # C++11 methods
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- value_type* data()
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- const value_type* const_data "data"()
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- void shrink_to_fit() except +
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- iterator emplace(const_iterator, ...) except +
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- value_type& emplace_back(...) except +
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-
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- ## end of copied from cython vector
164
-
165
- One_critical_filtration() except + nogil
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- One_critical_filtration(vector[value_type]&) except + nogil
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- One_critical_filtration(One_critical_filtration&) except + nogil
168
-
169
- One_critical_filtration(int) nogil
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- One_critical_filtration& operator=(const One_critical_filtration&) except +
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- @staticmethod
172
- vector[value_type]& vector[value_type]() nogil
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-
174
- void push_to_least_common_upper_bound(One_critical_filtration[T]&) nogil
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- void pull_to_greatest_common_lower_bound(One_critical_filtration[T]&) nogil
176
-
177
- bool is_finite() nogil
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-
179
-
180
- cdef extern from "gudhi/Multi_critical_filtration.h" namespace "Gudhi::multi_filtration":
181
- cdef cppclass Multi_critical_filtration[T=*]:
182
- ctypedef size_t size_type
183
- ctypedef One_critical_filtration[T] filtration_type
184
- Multi_critical_filtration() except + nogil
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- Multi_critical_filtration(One_critical_filtration[T]) except +
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- Multi_critical_filtration[T]& operator=(const Multi_critical_filtration[T]&) except +
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- size_t num_parameters() noexcept nogil
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- size_t num_generators() noexcept nogil
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- void add_guaranteed_generator(One_critical_filtration[T]) nogil
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- void add_generator(One_critical_filtration[T]) nogil
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- void reserve(size_t) noexcept nogil
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- void simplify() nogil
193
- void set_num_generators(size_t) nogil
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- One_critical_filtration[T]& operator[](int) nogil
195
-
196
- void push_to_least_common_upper_bound(One_critical_filtration[T]&) except + nogil
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- void pull_to_greatest_common_lower_bound(One_critical_filtration[T]&) except + nogil
198
-
199
- cdef extern from "gudhi/Multi_persistence/Box.h" namespace "Gudhi::multi_persistence":
200
- cdef cppclass Box[T=*]:
201
- ctypedef vector[T] corner_type
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- Box() except +
203
- Box( vector[T]&, vector[T]&) nogil
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- Box( pair[vector[T], vector[T]]&) nogil
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- void inflate(T) nogil
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- const One_critical_filtration[T]& get_lower_corner() nogil
207
- const One_critical_filtration[T]& get_upper_corner() nogil
208
- bool contains(vector[T]&) nogil
209
- pair[One_critical_filtration[T], One_critical_filtration[T]] get_bounding_corners() nogil
210
-
211
- cdef extern from "gudhi/Multi_persistence/Line.h" namespace "Gudhi::multi_persistence":
212
- cdef cppclass Line[T=*]:
213
- ctypedef One_critical_filtration[T] point_type
214
- Line() except + nogil
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- Line(One_critical_filtration[T]&) except + nogil
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- Line(One_critical_filtration[T]&, One_critical_filtration[T]&) except + nogil
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-
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-
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-
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-
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-
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- # ------ useful types:
223
- # ctypedef One_critical_filtration[float] Generator
224
- # ctypedef Multi_critical_filtration[float] kcritical
1
+ from libcpp.utility cimport pair
2
+ from libcpp cimport bool
3
+ from libcpp.vector cimport vector
4
+ from libcpp cimport tuple
5
+ from libc.stdint cimport uintptr_t,intptr_t
6
+ from cpython cimport Py_buffer
7
+
8
+
9
+ cdef extern from "gudhi/One_critical_filtration.h" namespace "Gudhi::multi_filtration":
10
+ cdef cppclass One_critical_filtration[T=*]:
11
+ ## Copied from cython vector
12
+ ctypedef size_t size_type
13
+ ctypedef ptrdiff_t difference_type
14
+ ctypedef T value_type
15
+
16
+ cppclass const_iterator
17
+ cppclass iterator:
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+ iterator() except +
19
+ iterator(iterator&) except +
20
+ value_type& operator*()
21
+ iterator operator++()
22
+ iterator operator--()
23
+ iterator operator++(int)
24
+ iterator operator--(int)
25
+ iterator operator+(size_type)
26
+ iterator operator-(size_type)
27
+ difference_type operator-(iterator)
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+ difference_type operator-(const_iterator)
29
+ bint operator==(iterator)
30
+ bint operator==(const_iterator)
31
+ bint operator!=(iterator)
32
+ bint operator!=(const_iterator)
33
+ bint operator<(iterator)
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+ bint operator<(const_iterator)
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+ bint operator>(iterator)
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+ bint operator>(const_iterator)
37
+ bint operator<=(iterator)
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+ bint operator<=(const_iterator)
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+ bint operator>=(iterator)
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+ bint operator>=(const_iterator)
41
+ cppclass const_iterator:
42
+ const_iterator() except +
43
+ const_iterator(iterator&) except +
44
+ const_iterator(const_iterator&) except +
45
+ operator=(iterator&) except +
46
+ const value_type& operator*()
47
+ const_iterator operator++()
48
+ const_iterator operator--()
49
+ const_iterator operator++(int)
50
+ const_iterator operator--(int)
51
+ const_iterator operator+(size_type)
52
+ const_iterator operator-(size_type)
53
+ difference_type operator-(iterator)
54
+ difference_type operator-(const_iterator)
55
+ bint operator==(iterator)
56
+ bint operator==(const_iterator)
57
+ bint operator!=(iterator)
58
+ bint operator!=(const_iterator)
59
+ bint operator<(iterator)
60
+ bint operator<(const_iterator)
61
+ bint operator>(iterator)
62
+ bint operator>(const_iterator)
63
+ bint operator<=(iterator)
64
+ bint operator<=(const_iterator)
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+ bint operator>=(iterator)
66
+ bint operator>=(const_iterator)
67
+
68
+ cppclass const_reverse_iterator
69
+ cppclass reverse_iterator:
70
+ reverse_iterator() except +
71
+ reverse_iterator(reverse_iterator&) except +
72
+ value_type& operator*()
73
+ reverse_iterator operator++()
74
+ reverse_iterator operator--()
75
+ reverse_iterator operator++(int)
76
+ reverse_iterator operator--(int)
77
+ reverse_iterator operator+(size_type)
78
+ reverse_iterator operator-(size_type)
79
+ difference_type operator-(iterator)
80
+ difference_type operator-(const_iterator)
81
+ bint operator==(reverse_iterator)
82
+ bint operator==(const_reverse_iterator)
83
+ bint operator!=(reverse_iterator)
84
+ bint operator!=(const_reverse_iterator)
85
+ bint operator<(reverse_iterator)
86
+ bint operator<(const_reverse_iterator)
87
+ bint operator>(reverse_iterator)
88
+ bint operator>(const_reverse_iterator)
89
+ bint operator<=(reverse_iterator)
90
+ bint operator<=(const_reverse_iterator)
91
+ bint operator>=(reverse_iterator)
92
+ bint operator>=(const_reverse_iterator)
93
+ cppclass const_reverse_iterator:
94
+ const_reverse_iterator() except +
95
+ const_reverse_iterator(reverse_iterator&) except +
96
+ operator=(reverse_iterator&) except +
97
+ const value_type& operator*()
98
+ const_reverse_iterator operator++()
99
+ const_reverse_iterator operator--()
100
+ const_reverse_iterator operator++(int)
101
+ const_reverse_iterator operator--(int)
102
+ const_reverse_iterator operator+(size_type)
103
+ const_reverse_iterator operator-(size_type)
104
+ difference_type operator-(iterator)
105
+ difference_type operator-(const_iterator)
106
+ bint operator==(reverse_iterator)
107
+ bint operator==(const_reverse_iterator)
108
+ bint operator!=(reverse_iterator)
109
+ bint operator!=(const_reverse_iterator)
110
+ bint operator<(reverse_iterator)
111
+ bint operator<(const_reverse_iterator)
112
+ bint operator>(reverse_iterator)
113
+ bint operator>(const_reverse_iterator)
114
+ bint operator<=(reverse_iterator)
115
+ bint operator<=(const_reverse_iterator)
116
+ bint operator>=(reverse_iterator)
117
+ bint operator>=(const_reverse_iterator)
118
+ value_type& operator[](size_type)
119
+ #vector& operator=(vector&)
120
+ void assign(size_type, const value_type&)
121
+ void assign[InputIt](InputIt, InputIt) except +
122
+ value_type& at(size_type) except +
123
+ value_type& back()
124
+ iterator begin()
125
+ const_iterator const_begin "begin"()
126
+ const_iterator cbegin()
127
+ size_type capacity()
128
+ void clear() nogil
129
+ bint empty() nogil
130
+ iterator end()
131
+ const_iterator const_end "end"()
132
+ const_iterator cend()
133
+ iterator erase(iterator)
134
+ iterator erase(iterator, iterator)
135
+ value_type& front()
136
+ iterator insert(iterator, const value_type&) except +
137
+ iterator insert(iterator, size_type, const value_type&) except +
138
+ iterator insert[InputIt](iterator, InputIt, InputIt) except +
139
+ size_type max_size()
140
+ void pop_back()
141
+ void push_back(value_type&) except + nogil
142
+ reverse_iterator rbegin()
143
+ const_reverse_iterator const_rbegin "rbegin"()
144
+ const_reverse_iterator crbegin()
145
+ reverse_iterator rend()
146
+ const_reverse_iterator const_rend "rend"()
147
+ const_reverse_iterator crend()
148
+ void reserve(size_type) except + nogil
149
+ void resize(size_type) except + nogil
150
+ void resize(size_type, value_type&) except +
151
+ # size_type size()
152
+ size_type num_parameters() nogil
153
+ size_type num_generators() nogil
154
+ void swap(vector&)
155
+
156
+ # C++11 methods
157
+ value_type* data()
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+ const value_type* const_data "data"()
159
+ void shrink_to_fit() except +
160
+ iterator emplace(const_iterator, ...) except +
161
+ value_type& emplace_back(...) except +
162
+
163
+ ## end of copied from cython vector
164
+
165
+ One_critical_filtration() except + nogil
166
+ One_critical_filtration(vector[value_type]&) except + nogil
167
+ One_critical_filtration(One_critical_filtration&) except + nogil
168
+
169
+ One_critical_filtration(int) nogil
170
+ One_critical_filtration& operator=(const One_critical_filtration&) except +
171
+ @staticmethod
172
+ vector[value_type]& vector[value_type]() nogil
173
+
174
+ void push_to_least_common_upper_bound(One_critical_filtration[T]&) nogil
175
+ void pull_to_greatest_common_lower_bound(One_critical_filtration[T]&) nogil
176
+
177
+ bool is_finite() nogil
178
+
179
+
180
+ cdef extern from "gudhi/Multi_critical_filtration.h" namespace "Gudhi::multi_filtration":
181
+ cdef cppclass Multi_critical_filtration[T=*]:
182
+ ctypedef size_t size_type
183
+ ctypedef One_critical_filtration[T] filtration_type
184
+ Multi_critical_filtration() except + nogil
185
+ Multi_critical_filtration(One_critical_filtration[T]) except +
186
+ Multi_critical_filtration[T]& operator=(const Multi_critical_filtration[T]&) except +
187
+ size_t num_parameters() noexcept nogil
188
+ size_t num_generators() noexcept nogil
189
+ void add_guaranteed_generator(One_critical_filtration[T]) nogil
190
+ void add_generator(One_critical_filtration[T]) nogil
191
+ void reserve(size_t) noexcept nogil
192
+ void simplify() nogil
193
+ void set_num_generators(size_t) nogil
194
+ One_critical_filtration[T]& operator[](int) nogil
195
+
196
+ void push_to_least_common_upper_bound(One_critical_filtration[T]&) except + nogil
197
+ void pull_to_greatest_common_lower_bound(One_critical_filtration[T]&) except + nogil
198
+
199
+ cdef extern from "gudhi/Multi_persistence/Box.h" namespace "Gudhi::multi_persistence":
200
+ cdef cppclass Box[T=*]:
201
+ ctypedef vector[T] corner_type
202
+ Box() except +
203
+ Box( vector[T]&, vector[T]&) nogil
204
+ Box( pair[vector[T], vector[T]]&) nogil
205
+ void inflate(T) nogil
206
+ const One_critical_filtration[T]& get_lower_corner() nogil
207
+ const One_critical_filtration[T]& get_upper_corner() nogil
208
+ bool contains(vector[T]&) nogil
209
+ pair[One_critical_filtration[T], One_critical_filtration[T]] get_bounding_corners() nogil
210
+
211
+ cdef extern from "gudhi/Multi_persistence/Line.h" namespace "Gudhi::multi_persistence":
212
+ cdef cppclass Line[T=*]:
213
+ ctypedef One_critical_filtration[T] point_type
214
+ Line() except + nogil
215
+ Line(One_critical_filtration[T]&) except + nogil
216
+ Line(One_critical_filtration[T]&, One_critical_filtration[T]&) except + nogil
217
+
218
+
219
+
220
+
221
+
222
+ # ------ useful types:
223
+ # ctypedef One_critical_filtration[float] Generator
224
+ # ctypedef Multi_critical_filtration[float] kcritical
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