meta-edc 0.2.24__py3-none-any.whl → 1.4.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1169) hide show
  1. meta_ae/action_items.py +40 -29
  2. meta_ae/admin/__init__.py +12 -2
  3. meta_ae/admin/ae_followup_admin.py +2 -2
  4. meta_ae/admin/ae_initial_admin.py +7 -4
  5. meta_ae/admin/ae_local_review_admin.py +2 -2
  6. meta_ae/admin/ae_sponsor_review_admin.py +2 -2
  7. meta_ae/admin/ae_susar_admin.py +3 -3
  8. meta_ae/admin/ae_tmg_admin.py +2 -2
  9. meta_ae/admin/death_report_admin.py +3 -3
  10. meta_ae/admin/death_report_tmg_admin.py +4 -2
  11. meta_ae/admin/death_report_tmg_second_admin.py +4 -2
  12. meta_ae/admin/hospitalization_admin.py +15 -0
  13. meta_ae/admin/modeladmin_mixins.py +14 -16
  14. meta_ae/baker_recipes.py +5 -6
  15. meta_ae/choices.py +1 -1
  16. meta_ae/forms/__init__.py +14 -0
  17. meta_ae/forms/death_report_form.py +1 -2
  18. meta_ae/forms/hospitalization_form.py +11 -0
  19. meta_ae/forms/modelform_mixins.py +2 -2
  20. meta_ae/list_data.py +2 -1
  21. meta_ae/migrations/0001_initial.py +27 -28
  22. meta_ae/migrations/0002_auto_20191024_1000.py +0 -1
  23. meta_ae/migrations/0003_auto_20191102_0033.py +0 -1
  24. meta_ae/migrations/0004_auto_20191114_0821.py +0 -1
  25. meta_ae/migrations/0005_auto_20210624_0225.py +0 -1
  26. meta_ae/migrations/0006_aelocalreview_aesponsorreview.py +5 -6
  27. meta_ae/migrations/0007_auto_20210911_2036.py +0 -1
  28. meta_ae/migrations/0008_auto_20211011_1657.py +0 -1
  29. meta_ae/migrations/0009_auto_20220307_1929.py +0 -1
  30. meta_ae/migrations/0010_auto_20220704_1841.py +0 -1
  31. meta_ae/migrations/0011_alter_aefollowup_action_identifier_and_more.py +0 -1
  32. meta_ae/migrations/0012_auto_20220826_0258.py +0 -1
  33. meta_ae/migrations/0013_auto_20220826_0322.py +0 -1
  34. meta_ae/migrations/0014_auto_20220826_0406.py +0 -1
  35. meta_ae/migrations/0015_auto_20220907_0157.py +0 -1
  36. meta_ae/migrations/0016_rename_narrative_aetmg_investigator_narrative_and_more.py +128 -0
  37. meta_ae/migrations/0017_auto_20221130_2257.py +29 -0
  38. meta_ae/migrations/0018_alter_deathreporttmg_cause_of_death_agreed_and_more.py +45 -0
  39. meta_ae/migrations/0019_alter_aefollowup_managers_alter_aeinitial_managers_and_more.py +529 -0
  40. meta_ae/migrations/0020_alter_aesusar_options_alter_aetmg_options_and_more.py +532 -0
  41. meta_ae/migrations/0021_alter_aefollowup_site_alter_aeinitial_site_and_more.py +158 -0
  42. meta_ae/migrations/0022_historicalhospitalization_hospitalization.py +590 -0
  43. meta_ae/migrations/0023_alter_aefollowup_action_identifier_and_more.py +2017 -0
  44. meta_ae/model_mixins/__init__.py +2 -0
  45. meta_ae/model_mixins/ae_review_model_mixin.py +8 -8
  46. meta_ae/model_mixins/death_report_model_mixin.py +3 -4
  47. meta_ae/models/__init__.py +14 -0
  48. meta_ae/models/ae_initial.py +4 -0
  49. meta_ae/models/death_report.py +0 -1
  50. meta_ae/models/death_report_tmg_second.py +0 -1
  51. meta_ae/models/hospitalization.py +21 -0
  52. meta_ae/models/managers.py +1 -4
  53. meta_ae/pdf_reports/__init__.py +4 -2
  54. meta_ae/pdf_reports/ae_pdf_report.py +7 -0
  55. meta_ae/pdf_reports/death_pdf_report.py +7 -0
  56. meta_ae/pdf_reports/meta_pdf_report_mixin.py +4 -2
  57. meta_ae/templatetags/meta_ae_extras.py +5 -6
  58. meta_analytics/.DS_Store +0 -0
  59. meta_analytics/README.rst +16 -0
  60. meta_analytics/dataframes/__init__.py +46 -0
  61. meta_analytics/dataframes/constants.py +36 -0
  62. meta_analytics/dataframes/get_eos_df.py +38 -0
  63. meta_analytics/dataframes/get_glucose_df.py +166 -0
  64. meta_analytics/dataframes/get_glucose_fbg_df.py +26 -0
  65. meta_analytics/dataframes/get_glucose_fbg_ogtt_df.py +21 -0
  66. meta_analytics/dataframes/get_last_imp_visits_df.py +103 -0
  67. meta_analytics/dataframes/glucose_endpoints/__init__.py +4 -0
  68. meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +184 -0
  69. meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +407 -0
  70. meta_analytics/dataframes/screening/__init__.py +4 -0
  71. meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +19 -0
  72. meta_analytics/dataframes/screening/get_screening_df.py +156 -0
  73. meta_analytics/dataframes/utils.py +74 -0
  74. meta_analytics/get_tables.py +80 -0
  75. meta_analytics/tables/__init__.py +4 -0
  76. meta_analytics/tables/eligible.py +106 -0
  77. meta_analytics/tables/enrolled/glucose.py +27 -0
  78. meta_analytics/tables/has_dm.py +61 -0
  79. meta_analytics/utils.py +81 -0
  80. meta_auth/auth_objects.py +34 -5
  81. meta_auth/auths.py +21 -6
  82. meta_consent/action_items.py +22 -3
  83. meta_consent/admin/__init__.py +8 -1
  84. meta_consent/admin/actions/__init__.py +2 -0
  85. meta_consent/admin/actions/create_missing_prescriptions.py +2 -2
  86. meta_consent/admin/list_filters.py +22 -0
  87. meta_consent/admin/modeladmin_mixins.py +148 -0
  88. meta_consent/admin/subject_consent_admin.py +6 -134
  89. meta_consent/admin/subject_consent_v1_admin.py +19 -0
  90. meta_consent/admin/subject_consent_v1_ext_admin.py +93 -0
  91. meta_consent/baker_recipes.py +11 -11
  92. meta_consent/consents.py +27 -8
  93. meta_consent/constants.py +1 -0
  94. meta_consent/form_validators/__init__.py +3 -0
  95. meta_consent/form_validators/subject_consent_form_validator.py +30 -0
  96. meta_consent/forms/__init__.py +10 -1
  97. meta_consent/forms/subject_consent_form.py +26 -46
  98. meta_consent/forms/subject_consent_v1_ext_form.py +47 -0
  99. meta_consent/forms/subject_consent_v1_form.py +26 -0
  100. meta_consent/forms/subject_reconsent_form.py +4 -4
  101. meta_consent/locale/lg/LC_MESSAGES/django.po +69 -0
  102. meta_consent/locale/sw/LC_MESSAGES/django.po +70 -0
  103. meta_consent/management/commands/create_missing_prescriptions.py +5 -3
  104. meta_consent/migrations/0001_initial.py +9 -10
  105. meta_consent/migrations/0002_auto_20191024_1000.py +0 -1
  106. meta_consent/migrations/0003_auto_20200325_0901.py +0 -1
  107. meta_consent/migrations/0004_auto_20210624_0225.py +0 -1
  108. meta_consent/migrations/0005_alter_subjectconsent_options.py +0 -1
  109. meta_consent/migrations/0006_auto_20210911_2036.py +0 -1
  110. meta_consent/migrations/0007_auto_20220128_1719.py +0 -1
  111. meta_consent/migrations/0008_auto_20220412_2151.py +0 -1
  112. meta_consent/migrations/0009_auto_20220704_1841.py +0 -1
  113. meta_consent/migrations/0010_alter_historicalsubjectreconsent_action_identifier_and_more.py +0 -1
  114. meta_consent/migrations/0011_auto_20220826_0258.py +0 -1
  115. meta_consent/migrations/0012_auto_20220826_0322.py +0 -1
  116. meta_consent/migrations/0013_auto_20220826_0406.py +0 -1
  117. meta_consent/migrations/0014_alter_subjectconsent_managers.py +1 -2
  118. meta_consent/migrations/0015_auto_20220914_0542.py +0 -1
  119. meta_consent/migrations/0016_auto_20220914_0547.py +0 -2
  120. meta_consent/migrations/0017_auto_20220929_1742.py +3 -3
  121. meta_consent/migrations/0018_alter_subjectconsent_options_and_more.py +170 -0
  122. meta_consent/migrations/0019_alter_subjectconsent_options_and_more.py +191 -0
  123. meta_consent/migrations/0020_historicalsubjectconsent_model_name_and_more.py +34 -0
  124. meta_consent/migrations/0021_auto_20240111_0442.py +17 -0
  125. meta_consent/migrations/0022_alter_historicalsubjectconsent_site_and_more.py +36 -0
  126. meta_consent/migrations/0023_subjectconsentv1_and_more.py +86 -0
  127. meta_consent/migrations/0024_historicalsubjectconsentv1.py +595 -0
  128. meta_consent/migrations/0025_alter_historicalsubjectconsent_first_name_and_more.py +151 -0
  129. meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +535 -0
  130. meta_consent/migrations/0027_auto_20250111_0344.py +30 -0
  131. meta_consent/migrations/0028_historicalsubjectconsentv1ext_assessment_score_and_more.py +162 -0
  132. meta_consent/migrations/0029_alter_historicalsubjectconsentv1ext_agrees_to_extension_and_more.py +33 -0
  133. meta_consent/migrations/0030_auto_20250120_2114.py +40 -0
  134. meta_consent/migrations/0031_alter_historicalsubjectconsent_guardian_name_and_more.py +124 -0
  135. meta_consent/migrations/0032_alter_historicalsubjectconsent_device_created_and_more.py +678 -0
  136. meta_consent/migrations/0033_historicalsubjectconsentspfq_subjectconsentspfq.py +615 -0
  137. meta_consent/migrations/0034_remove_subjectconsentspfq_site_and_more.py +23 -0
  138. meta_consent/migrations/0035_alter_historicalsubjectconsent_consent_definition_name_and_more.py +43 -0
  139. meta_consent/models/__init__.py +11 -0
  140. meta_consent/models/model_mixins.py +1 -2
  141. meta_consent/models/signals.py +68 -52
  142. meta_consent/models/subject_consent.py +9 -20
  143. meta_consent/models/subject_consent_v1.py +15 -0
  144. meta_consent/models/subject_consent_v1_ext.py +34 -0
  145. meta_consent/models/subject_reconsent.py +6 -7
  146. meta_dashboard/apps.py +0 -40
  147. meta_dashboard/locale/lg/LC_MESSAGES/django.po +30 -0
  148. meta_dashboard/locale/sw/LC_MESSAGES/django.po +31 -0
  149. meta_dashboard/navbars.py +12 -14
  150. meta_dashboard/patterns.py +1 -1
  151. meta_dashboard/templates/meta_dashboard/{bootstrap3/buttons → buttons}/dashboard_button.html +1 -1
  152. meta_dashboard/templates/meta_dashboard/{bootstrap3/buttons → buttons}/eligibility_button.html +1 -1
  153. meta_dashboard/templates/meta_dashboard/{bootstrap3/buttons → buttons}/screening_button.html +1 -1
  154. meta_dashboard/templates/meta_dashboard/{bootstrap3/screening → screening}/listboard.html +18 -17
  155. meta_dashboard/templates/meta_dashboard/subject/dashboard/sidebar.html +24 -0
  156. meta_dashboard/templates/meta_dashboard/{bootstrap3/subject → subject}/dashboard/top_bar.html +1 -1
  157. meta_dashboard/templates/meta_dashboard/subject/dashboard.html +14 -0
  158. meta_dashboard/templates/meta_dashboard/{bootstrap3/subject → subject}/listboard.html +14 -6
  159. meta_dashboard/templatetags/meta_dashboard_extras.py +77 -78
  160. meta_dashboard/urls.py +10 -10
  161. meta_dashboard/view_utils/__init__.py +13 -0
  162. meta_dashboard/view_utils/subject_screening_button.py +114 -0
  163. meta_dashboard/views/__init__.py +8 -0
  164. meta_dashboard/views/ae/__init__.py +2 -0
  165. meta_dashboard/views/ae/ae_listboard_view.py +3 -4
  166. meta_dashboard/views/ae/death_report_listboard_view.py +4 -4
  167. meta_dashboard/views/screening/__init__.py +2 -0
  168. meta_dashboard/views/screening/listboard_view.py +5 -16
  169. meta_dashboard/views/subject/__init__.py +2 -0
  170. meta_dashboard/views/subject/dashboard/__init__.py +2 -0
  171. meta_dashboard/views/subject/dashboard/dashboard_view.py +41 -3
  172. meta_dashboard/views/subject/listboard/__init__.py +2 -0
  173. meta_dashboard/views/subject/listboard/listboard_view.py +8 -12
  174. meta_data_manager/handlers.py +0 -1
  175. meta_edc/__init__.py +10 -0
  176. meta_edc/admin.py +3 -4
  177. meta_edc/celery.py +6 -14
  178. meta_edc/celery_live.py +19 -0
  179. meta_edc/celery_uat.py +25 -0
  180. meta_edc/management/commands/update_forms_reference.py +16 -17
  181. meta_edc/meta_version.py +2 -2
  182. meta_edc/navbars.py +17 -12
  183. meta_edc/settings/debug.py +30 -9
  184. meta_edc/settings/defaults.py +145 -94
  185. meta_edc/settings/live.py +5 -10
  186. meta_edc/settings/logging.py +10 -3
  187. meta_edc/settings/minimal.py +5 -5
  188. meta_edc/settings/uat.py +4 -13
  189. meta_edc/templates/meta_edc/{bootstrap3/base.html → base.html} +1 -1
  190. meta_edc/templates/meta_edc/{bootstrap3/home.html → home.html} +14 -8
  191. meta_edc/urls.py +10 -4
  192. meta_edc/utils.py +3 -1
  193. meta_edc/views/__init__.py +2 -0
  194. meta_edc/views/home_view.py +6 -7
  195. meta_edc/wsgi.py +1 -1
  196. meta_edc/wsgi_live.py +1 -1
  197. meta_edc/wsgi_uat.py +1 -1
  198. meta_edc-1.4.0.dist-info/METADATA +174 -0
  199. meta_edc-1.4.0.dist-info/RECORD +1164 -0
  200. meta_edc-1.4.0.dist-info/WHEEL +4 -0
  201. meta_labs/list_data.py +2 -2
  202. meta_labs/reportables.py +80 -11
  203. meta_lists/admin.py +30 -0
  204. meta_lists/list_data.py +60 -5
  205. meta_lists/migrations/0001_initial.py +0 -1
  206. meta_lists/migrations/0002_auto_20191026_2231.py +0 -1
  207. meta_lists/migrations/0003_auto_20191102_0033.py +0 -1
  208. meta_lists/migrations/0004_auto_20191102_1859.py +0 -1
  209. meta_lists/migrations/0005_auto_20191104_0930.py +0 -1
  210. meta_lists/migrations/0006_auto_20200514_1959.py +0 -1
  211. meta_lists/migrations/0007_auto_20200516_2356.py +0 -1
  212. meta_lists/migrations/0008_auto_20200528_1517.py +3 -4
  213. meta_lists/migrations/0009_auto_20200613_2041.py +0 -1
  214. meta_lists/migrations/0010_auto_20200617_1738.py +0 -1
  215. meta_lists/migrations/0011_auto_20210624_0225.py +0 -1
  216. meta_lists/migrations/0012_auto_20210728_1809.py +0 -1
  217. meta_lists/migrations/0013_transferreasons_and_more.py +0 -1
  218. meta_lists/migrations/0014_auto_20220913_2139.py +0 -1
  219. meta_lists/migrations/0015_abnormalfootappearanceobservations_extra_value_and_more.py +67 -0
  220. meta_lists/migrations/0016_alter_abnormalfootappearanceobservations_options_and_more.py +617 -0
  221. meta_lists/migrations/0017_complications_dmmedications_dmtreatments_and_more.py +365 -0
  222. meta_lists/migrations/0018_missedreferralreasons.py +73 -0
  223. meta_lists/migrations/0019_auto_20250128_0143.py +48 -0
  224. meta_lists/migrations/0020_alter_abnormalfootappearanceobservations_extra_value_and_more.py +404 -0
  225. meta_lists/models.py +36 -0
  226. meta_pharmacy/admin/__init__.py +7 -0
  227. meta_pharmacy/admin/rx_admin.py +76 -0
  228. meta_pharmacy/admin/substitutions_admin.py +67 -0
  229. meta_pharmacy/admin_site.py +9 -0
  230. meta_pharmacy/apps.py +5 -0
  231. meta_pharmacy/constants.py +10 -0
  232. meta_pharmacy/forms/__init__.py +4 -0
  233. meta_pharmacy/forms/rx_form.py +15 -0
  234. meta_pharmacy/forms/substitutions_form.py +56 -0
  235. meta_pharmacy/label_configs.py +30 -0
  236. meta_pharmacy/labels/__init__.py +7 -0
  237. meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +61 -0
  238. meta_pharmacy/labels/draw_label_for_subject_with_code128.py +14 -0
  239. meta_pharmacy/labels/draw_label_with_test_data.py +26 -0
  240. meta_pharmacy/labels/label_data.py +13 -0
  241. meta_pharmacy/labels/print_sheets.py +95 -0
  242. meta_pharmacy/list_data.py +8 -0
  243. meta_pharmacy/management/commands/update_initial_pharmacy_data.py +11 -0
  244. meta_pharmacy/migrations/0001_initial.py +32 -0
  245. meta_pharmacy/migrations/0002_initial.py +682 -0
  246. meta_pharmacy/migrations/0003_auto_20240909_2335.py +65 -0
  247. meta_pharmacy/migrations/0004_alter_historicalsubstitutions_report_datetime_and_more.py +23 -0
  248. meta_pharmacy/migrations/0005_auto_20240911_0352.py +17 -0
  249. meta_pharmacy/migrations/0006_lotnumber_label.py +280 -0
  250. meta_pharmacy/migrations/0007_lotnumber_medication.py +24 -0
  251. meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +389 -0
  252. meta_pharmacy/migrations/0009_remove_historicalrx_slug.py +17 -0
  253. meta_pharmacy/migrations/0010_alter_historicallabeldata_device_created_and_more.py +382 -0
  254. meta_pharmacy/models/__init__.py +10 -0
  255. meta_pharmacy/models/label_data.py +37 -0
  256. meta_pharmacy/models/rx.py +18 -0
  257. meta_pharmacy/models/rx_label.py +38 -0
  258. meta_pharmacy/models/substitutions.py +88 -0
  259. meta_pharmacy/prepare_meta_pharmacy.py +1 -1
  260. meta_pharmacy/urls.py +8 -0
  261. meta_pharmacy/utils/__init__.py +3 -0
  262. meta_pharmacy/utils/update_initial_pharmacy_data.py +146 -0
  263. meta_prn/action_items.py +76 -27
  264. meta_prn/admin/__init__.py +20 -1
  265. meta_prn/admin/dm_referral_admin.py +50 -0
  266. meta_prn/admin/end_of_study_admin.py +28 -18
  267. meta_prn/admin/loss_to_followup_admin.py +5 -5
  268. meta_prn/admin/off_study_medication_admin.py +7 -9
  269. meta_prn/admin/offschedule_admin.py +14 -14
  270. meta_prn/admin/offschedule_dm_referral_admin.py +48 -0
  271. meta_prn/admin/offschedule_postnatal_admin.py +17 -10
  272. meta_prn/admin/offschedule_pregnancy_admin.py +20 -12
  273. meta_prn/admin/onschedule_admin.py +9 -11
  274. meta_prn/admin/onschedule_dm_referral_admin.py +38 -0
  275. meta_prn/admin/pregnancy_notification_admin.py +13 -11
  276. meta_prn/admin/protocol_incident_admin.py +6 -104
  277. meta_prn/admin/subject_transfer_admin.py +3 -2
  278. meta_prn/baker_recipes.py +15 -8
  279. meta_prn/choices.py +15 -10
  280. meta_prn/constants.py +5 -2
  281. meta_prn/form_validators/__init__.py +5 -0
  282. meta_prn/form_validators/end_of_study.py +65 -21
  283. meta_prn/form_validators/protocol_incident.py +1 -2
  284. meta_prn/forms/__init__.py +15 -0
  285. meta_prn/forms/dm_referral_form.py +34 -0
  286. meta_prn/forms/end_of_study_form.py +1 -2
  287. meta_prn/forms/loss_to_followup_form.py +1 -2
  288. meta_prn/forms/off_study_medication_form.py +2 -3
  289. meta_prn/forms/offschedule_dm_referral_form.py +35 -0
  290. meta_prn/forms/offschedule_form.py +31 -1
  291. meta_prn/forms/offschedule_pregnancy_form.py +0 -1
  292. meta_prn/forms/pregnancy_notification_form.py +16 -19
  293. meta_prn/forms/subject_transfer_form.py +0 -1
  294. meta_prn/list_data.py +3 -3
  295. meta_prn/migrations/0001_initial.py +25 -26
  296. meta_prn/migrations/0002_auto_20191024_1000.py +0 -1
  297. meta_prn/migrations/0003_auto_20200120_2020.py +0 -1
  298. meta_prn/migrations/0004_auto_20200403_0332.py +0 -1
  299. meta_prn/migrations/0005_auto_20200524_1944.py +0 -1
  300. meta_prn/migrations/0006_auto_20210624_0225.py +0 -1
  301. meta_prn/migrations/0007_auto_20210721_0335.py +0 -1
  302. meta_prn/migrations/0008_auto_20210910_0238.py +0 -1
  303. meta_prn/migrations/0009_auto_20210910_0239.py +0 -1
  304. meta_prn/migrations/0010_auto_20210910_1906.py +0 -1
  305. meta_prn/migrations/0011_auto_20210910_1911.py +1 -2
  306. meta_prn/migrations/0012_auto_20210911_0004.py +1 -2
  307. meta_prn/migrations/0013_auto_20210911_2036.py +0 -1
  308. meta_prn/migrations/0014_auto_20211003_1709.py +0 -1
  309. meta_prn/migrations/0015_auto_20211104_1447.py +0 -1
  310. meta_prn/migrations/0016_auto_20220128_1719.py +0 -1
  311. meta_prn/migrations/0017_auto_20220307_1929.py +5 -6
  312. meta_prn/migrations/0018_auto_20220309_2106.py +9 -10
  313. meta_prn/migrations/0019_auto_20220309_2230.py +0 -1
  314. meta_prn/migrations/0020_auto_20220310_0439.py +0 -1
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  598. meta_screening/migrations/0046_historicalscreeningpartone_hba1c_datetime_and_more.py +0 -1
  599. meta_screening/migrations/0047_historicalscreeningpartone_appt_datetime_repeat_and_more.py +0 -1
  600. meta_screening/migrations/0048_rename_appt_datetime_repeat_historicalscreeningpartone_repeat_appt_datetime_and_more.py +0 -1
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  602. meta_screening/migrations/0050_historicalscreeningpartone_agree_to_p3_and_more.py +0 -1
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  616. meta_screening/migrations/0064_remove_historicalscreeningpartone_fasting_duration_minutes_and_more.py +126 -0
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  623. meta_screening/model_mixins/creatinine_fields_model_mixin.py +2 -4
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  626. meta_screening/model_mixins/part_three_fields_model_mixin.py +19 -33
  627. meta_screening/model_mixins/part_two_fields_model_mixin.py +19 -18
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  630. meta_screening/models/proxy_models.py +9 -1
  631. meta_screening/models/signals.py +10 -11
  632. meta_screening/models/subject_refusal.py +5 -5
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  640. meta_subject/admin/blood_results/__init__.py +10 -2
  641. meta_subject/admin/blood_results/blood_results_fbc_admin.py +6 -3
  642. meta_subject/admin/blood_results/blood_results_hba1c_admin.py +6 -3
  643. meta_subject/admin/blood_results/blood_results_ins_admin.py +6 -3
  644. meta_subject/admin/blood_results/blood_results_lft_admin.py +6 -3
  645. meta_subject/admin/blood_results/blood_results_lipids_admin.py +24 -0
  646. meta_subject/admin/blood_results/blood_results_rft_admin.py +8 -8
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  654. meta_subject/admin/egfr_drop_notification_admin.py +1 -4
  655. meta_subject/admin/eq5d3l_admin.py +4 -4
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  657. meta_subject/admin/fieldsets.py +5 -5
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  659. meta_subject/admin/followup_vitals_admin.py +31 -7
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  662. meta_subject/admin/health_economics/__init__.py +4 -0
  663. meta_subject/admin/{health_economics_simple_admin.py → health_economics/health_economics_simple_admin.py} +7 -7
  664. meta_subject/admin/health_economics/health_economics_update_admin.py +101 -0
  665. meta_subject/admin/hepatitis_test_admin.py +4 -4
  666. meta_subject/admin/hiv_exit_review_admin.py +55 -0
  667. meta_subject/admin/list_filters.py +76 -0
  668. meta_subject/admin/malaria_test_admin.py +4 -29
  669. meta_subject/admin/medication_adherence_admin.py +5 -10
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  671. meta_subject/admin/modeladmin.py +9 -8
  672. meta_subject/admin/next_appointment_admin.py +19 -0
  673. meta_subject/admin/other_arv_regimens_admin.py +10 -14
  674. meta_subject/admin/patient_history_admin.py +7 -7
  675. meta_subject/admin/physical_exam_admin.py +4 -4
  676. meta_subject/admin/pregnancy_update_admin.py +4 -4
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  678. meta_subject/admin/study_medication_admin.py +56 -11
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  682. meta_subject/admin/urine_dipstick_test_admin.py +4 -4
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  690. meta_subject/form_validators/delivery_form_validator.py +83 -0
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  706. meta_subject/forms/blood_results/blood_results_lft_form.py +0 -1
  707. meta_subject/forms/blood_results/{blood_results_lipid_form.py → blood_results_lipids_form.py} +5 -6
  708. meta_subject/forms/blood_results/blood_results_rft_form.py +60 -5
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  710. meta_subject/forms/concomitant_medication_form.py +1 -7
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  885. meta_subject/migrations/0136_egfrdropnotification_creatinine_quantifier_and_more.py +0 -1
  886. meta_subject/migrations/0137_alter_egfrdropnotification_egfr_percent_change_and_more.py +0 -1
  887. meta_subject/migrations/0138_alter_glucose_fbg_datetime_and_more.py +0 -1
  888. meta_subject/migrations/0139_alter_bloodresultsins_ins_units_and_more.py +0 -1
  889. meta_subject/migrations/0140_alter_bloodresultsfbc_action_identifier_and_more.py +0 -1
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  906. meta_subject/migrations/0157_remove_bloodresultsfbc_crf_status_and_more.py +512 -0
  907. meta_subject/migrations/0158_alter_followupexamination_attended_clinic_and_more.py +52 -0
  908. meta_subject/migrations/0159_alter_bloodresultsfbc_results_abnormal_and_more.py +152 -0
  909. meta_subject/migrations/0160_alter_healtheconomicssimple_education_certificate_and_more.py +44 -0
  910. meta_subject/migrations/0161_alter_birthoutcomes_options_and_more.py +3307 -0
  911. meta_subject/migrations/0162_alter_followupexamination_abdominal_tenderness_and_more.py +66 -0
  912. meta_subject/migrations/0163_alter_birthoutcomes_options_and_more.py +3470 -0
  913. meta_subject/migrations/0164_dmreferralfollowup_historicaldmreferralfollowup.py +709 -0
  914. meta_subject/migrations/0165_alter_dmreferralfollowup_healthcare_workers.py +22 -0
  915. meta_subject/migrations/0166_rename_dm_medications_other_dmreferralfollowup_other_dm_medications_and_more.py +184 -0
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  917. meta_subject/migrations/0168_alter_dmreferralfollowup_last_missed_pill_and_more.py +53 -0
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  919. meta_subject/migrations/0170_remove_glucose_repeat_fbg_and_more.py +52 -0
  920. meta_subject/migrations/0171_alter_glucose_endpoint_today_and_more.py +80 -0
  921. meta_subject/migrations/0172_remove_historicalbloodresultsglu_action_item_and_more.py +67 -0
  922. meta_subject/migrations/0173_alter_glucosefbg_options_and_more.py +117 -0
  923. meta_subject/migrations/0174_remove_glucosefbg_glucose_abnormal_and_more.py +105 -0
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  925. meta_subject/migrations/0176_alter_glucosefbg_glucose_value_and_more.py +44 -0
  926. meta_subject/migrations/0177_alter_bloodresultslft_alp_value_and_more.py +91 -0
  927. meta_subject/migrations/0178_historicalhealtheconomicsupdate_and_more.py +719 -0
  928. meta_subject/migrations/0179_alter_birthoutcomes_consent_model_and_more.py +835 -0
  929. meta_subject/migrations/0180_dmreferralfollowup_missed_referral_reasons_and_more.py +62 -0
  930. meta_subject/migrations/0181_dmreferralfollowup_action_identifier_and_more.py +143 -0
  931. meta_subject/migrations/0182_rename_dmreferralfollowup_dmfollowup_and_more.py +54 -0
  932. meta_subject/migrations/0183_alter_dmfollowup_on_dm_medications_and_more.py +31 -0
  933. meta_subject/migrations/0184_alter_glucose_options_and_more.py +31 -0
  934. meta_subject/migrations/0185_alter_bloodresultsins_fasting_duration_str_and_more.py +82 -0
  935. meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py +54 -0
  936. meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py +442 -0
  937. meta_subject/migrations/0188_historicaldmdxresult_dmdxresult.py +394 -0
  938. meta_subject/migrations/0189_alter_dmdxresult_options_and_more.py +116 -0
  939. meta_subject/migrations/0190_dmdiagnosis_dx_no_tmg_reason_and_more.py +65 -0
  940. meta_subject/migrations/0191_alter_dmdiagnosis_dx_no_tmg_reason_and_more.py +70 -0
  941. meta_subject/migrations/0192_rename_glucose_quantifier_glucosefbg_fbg_quantifier_and_more.py +44 -0
  942. meta_subject/migrations/0193_alter_glucosefbg_fbg_value_and_more.py +44 -0
  943. meta_subject/migrations/0194_remove_glucosefbg_assay_datetime_and_more.py +166 -0
  944. meta_subject/migrations/0195_alter_glucosefbg_fbg_datetime_and_more.py +27 -0
  945. meta_subject/migrations/0196_glucosefbg_fbg_not_performed_reason_and_more.py +49 -0
  946. meta_subject/migrations/0197_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
  947. meta_subject/migrations/0198_alter_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
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  949. meta_subject/migrations/0200_rename_fasting_duration_minutes_bloodresultsins_fasting_duration_delta_and_more.py +43 -0
  950. meta_subject/migrations/0201_alter_bloodresultsins_fasting_duration_delta_and_more.py +58 -0
  951. meta_subject/migrations/0202_auto_20240516_0315.py +32 -0
  952. meta_subject/migrations/0203_alter_bloodresultsins_fasting_duration_delta_and_more.py +67 -0
  953. meta_subject/migrations/0204_glucosefbg_repeat_fbg_date_and_more.py +27 -0
  954. meta_subject/migrations/0205_historicalsubjectrequisition_crf_status_and_more.py +80 -0
  955. meta_subject/migrations/0206_bloodresultsfbc_crf_status_and_more.py +62 -0
  956. meta_subject/migrations/0207_alter_historicalphysicalexam_waist_circumference_and_more.py +46 -0
  957. meta_subject/migrations/0208_birthoutcomes_crf_status_and_more.py +62 -0
  958. meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +36 -0
  959. meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py +123 -0
  960. meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py +45 -0
  961. meta_subject/migrations/0212_auto_20240827_2222.py +23 -0
  962. meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py +35 -0
  963. meta_subject/migrations/0214_historicalstudymedication_stock_codes_and_more.py +44 -0
  964. meta_subject/migrations/0215_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
  965. meta_subject/migrations/0216_historicalnextappointment_nextappointment.py +553 -0
  966. meta_subject/migrations/0217_alter_historicalnextappointment_appt_datetime_and_more.py +42 -0
  967. meta_subject/migrations/0218_alter_historicalnextappointment_appt_date_and_more.py +53 -0
  968. meta_subject/migrations/0219_remove_historicalnextappointment_allow_create_interim_and_more.py +92 -0
  969. meta_subject/migrations/0220_historicalbloodresultsgludummy_bloodresultsgludummy.py +825 -0
  970. meta_subject/migrations/0221_auto_20250402_1913.py +42 -0
  971. meta_subject/migrations/0222_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
  972. meta_subject/migrations/0223_bloodresultsfbc_errors_bloodresultsgludummy_errors_and_more.py +83 -0
  973. meta_subject/migrations/0224_bloodresultsfbc_abnormal_summary_and_more.py +153 -0
  974. meta_subject/migrations/0225_followupvitals_waist_circumference_and_more.py +46 -0
  975. meta_subject/migrations/0226_followupvitals_waist_circumference_comment_and_more.py +97 -0
  976. meta_subject/migrations/0227_alter_followupvitals_waist_circumference_comment_and_more.py +97 -0
  977. meta_subject/migrations/0228_bloodresultshba1c_hba1c_datetime_and_more.py +2518 -0
  978. meta_subject/migrations/0229_alter_glucosefbg_consent_model_and_more.py +1918 -0
  979. meta_subject/migrations/0230_alter_historicaldelivery_action_identifier_and_more.py +1733 -0
  980. meta_subject/migrations/0231_alter_historicalmedicationadherence_consent_model_and_more.py +2054 -0
  981. meta_subject/migrations/0232_alter_patienthistory_concomitant_conditions_and_more.py +1170 -0
  982. meta_subject/migrations/0233_historicalspfq_spfq.py +1066 -0
  983. meta_subject/migrations/0234_remove_spfq_site_remove_spfq_subject_visit_and_more.py +27 -0
  984. meta_subject/migrations/0235_glucosefbg_endpoint_today_and_more.py +606 -0
  985. meta_subject/migrations/0236_alter_historicalhivexitreview_other_current_arv_regimen_and_more.py +58 -0
  986. meta_subject/migrations/0237_historicalhivexitreview_singleton_field_and_more.py +68 -0
  987. meta_subject/migrations/0238_historicalhivexitreview_available_and_more.py +88 -0
  988. meta_subject/model_mixins/__init__.py +10 -0
  989. meta_subject/model_mixins/arv_history_model_mixin.py +5 -46
  990. meta_subject/model_mixins/arv_review_model_mixin.py +53 -0
  991. meta_subject/model_mixins/search_slug_model_mixin.py +1 -2
  992. meta_subject/model_mixins/vitals_fields_model_mixin.py +33 -1
  993. meta_subject/models/__init__.py +61 -4
  994. meta_subject/models/birth_outcomes.py +17 -8
  995. meta_subject/models/blood_results/__init__.py +12 -2
  996. meta_subject/models/blood_results/blood_results_fbc.py +9 -4
  997. meta_subject/models/blood_results/blood_results_glu.py +9 -4
  998. meta_subject/models/blood_results/blood_results_hba1c.py +8 -2
  999. meta_subject/models/blood_results/blood_results_ins.py +8 -2
  1000. meta_subject/models/blood_results/blood_results_lft.py +8 -2
  1001. meta_subject/models/blood_results/{blood_results_lipid.py → blood_results_lipids.py} +11 -4
  1002. meta_subject/models/blood_results/blood_results_rft.py +7 -1
  1003. meta_subject/models/complications.py +1 -3
  1004. meta_subject/models/complications_glycemia.py +3 -4
  1005. meta_subject/models/concomitant_medication.py +0 -1
  1006. meta_subject/models/delivery.py +4 -6
  1007. meta_subject/models/diabetes/__init__.py +4 -0
  1008. meta_subject/models/diabetes/dm_endpoint.py +61 -0
  1009. meta_subject/models/diabetes/dm_followup.py +215 -0
  1010. meta_subject/models/diet_and_lifestyle.py +5 -5
  1011. meta_subject/models/egfr_drop_notification.py +0 -1
  1012. meta_subject/models/followup_examination.py +28 -32
  1013. meta_subject/models/followup_vitals.py +3 -4
  1014. meta_subject/models/glucose.py +50 -15
  1015. meta_subject/models/glucose_fbg.py +74 -0
  1016. meta_subject/models/glucose_review.py +15 -0
  1017. meta_subject/models/health_economics/__init__.py +5 -0
  1018. meta_subject/models/{health_economics.py → health_economics/health_economics.py} +13 -14
  1019. meta_subject/models/{health_economics_simple.py → health_economics/health_economics_simple.py} +3 -4
  1020. meta_subject/models/health_economics/health_economics_update.py +97 -0
  1021. meta_subject/models/hepatitis_test.py +2 -3
  1022. meta_subject/models/hiv_exit_review.py +44 -0
  1023. meta_subject/models/malaria_test.py +3 -31
  1024. meta_subject/models/next_appointment.py +15 -0
  1025. meta_subject/models/off_study_drug.py +0 -1
  1026. meta_subject/models/other_arv_regimens_detail.py +3 -5
  1027. meta_subject/models/patient_history.py +6 -8
  1028. meta_subject/models/physical_exam.py +6 -6
  1029. meta_subject/models/pregnancy_update.py +1 -2
  1030. meta_subject/models/sf12.py +0 -3
  1031. meta_subject/models/signals.py +32 -11
  1032. meta_subject/models/study_medication.py +0 -1
  1033. meta_subject/models/subject_requisition.py +3 -5
  1034. meta_subject/models/subject_visit.py +5 -8
  1035. meta_subject/models/subject_visit_missed.py +0 -1
  1036. meta_subject/models/todo.txt +1 -1
  1037. meta_subject/models/urine_dipstick_test.py +2 -3
  1038. meta_subject/models/urine_pregnancy.py +1 -2
  1039. meta_subject/static/meta_subject/slider.css +1 -1
  1040. meta_subject/templates/meta_subject/endpoint_review_instructions.html +6 -0
  1041. meta_subject/templates/meta_subject/widgets/slider.html +0 -1
  1042. meta_visit_schedule/constants.py +7 -1
  1043. meta_visit_schedule/visit_schedules/__init__.py +3 -1
  1044. meta_visit_schedule/visit_schedules/phase_three/__init__.py +2 -0
  1045. meta_visit_schedule/visit_schedules/phase_three/crfs.py +212 -95
  1046. meta_visit_schedule/visit_schedules/phase_three/crfs_pregnancy.py +2 -2
  1047. meta_visit_schedule/visit_schedules/phase_three/requisitions.py +30 -51
  1048. meta_visit_schedule/visit_schedules/phase_three/schedule.py +72 -7
  1049. meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +59 -0
  1050. meta_visit_schedule/visit_schedules/phase_three/schedule_pregnancy.py +7 -5
  1051. meta_visit_schedule/visit_schedules/phase_three/visit_schedule.py +3 -1
  1052. meta_ae/pdf_reports/ae_report.py +0 -8
  1053. meta_ae/pdf_reports/death_report.py +0 -8
  1054. meta_ae/tests/holidays.csv +0 -15
  1055. meta_ae/tests/tests/test_actions.py +0 -127
  1056. meta_ae/tests/urls.py +0 -10
  1057. meta_consent/admin/subject_reconsent_admin.py +0 -77
  1058. meta_consent/tests/holidays.csv +0 -15
  1059. meta_consent/tests/tests/test_form_validators.py +0 -85
  1060. meta_consent/tests/tests/test_subject_consent.py +0 -10
  1061. meta_consent/tests/urls.py +0 -18
  1062. meta_dashboard/model_wrappers/__init__.py +0 -8
  1063. meta_dashboard/model_wrappers/ae_initial_model_wrapper.py +0 -6
  1064. meta_dashboard/model_wrappers/death_report_model_wrapper.py +0 -15
  1065. meta_dashboard/model_wrappers/subject_refusal_model_wrapper.py +0 -16
  1066. meta_dashboard/model_wrappers/subject_screening_model_wrapper.py +0 -85
  1067. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard.html +0 -11
  1068. meta_dashboard/tests/admin.py +0 -22
  1069. meta_dashboard/tests/holidays.csv +0 -15
  1070. meta_dashboard/tests/tests/test_model_wrappers.py +0 -71
  1071. meta_dashboard/tests/urls.py +0 -59
  1072. meta_edc/tests/etc/randomization_list_phase_three.csv +0 -241
  1073. meta_edc/tests/etc/user-aes-local.key +0 -1
  1074. meta_edc/tests/etc/user-aes-restricted.key +0 -0
  1075. meta_edc/tests/etc/user-rsa-local-private.pem +0 -27
  1076. meta_edc/tests/etc/user-rsa-local-public.pem +0 -9
  1077. meta_edc/tests/etc/user-rsa-restricted-private.pem +0 -27
  1078. meta_edc/tests/etc/user-rsa-restricted-public.pem +0 -9
  1079. meta_edc/tests/etc/user-salt-local.key +0 -0
  1080. meta_edc/tests/etc/user-salt-restricted.key +0 -0
  1081. meta_edc/tests/tests/test_endpoints.py +0 -525
  1082. meta_edc-0.2.24.dist-info/METADATA +0 -180
  1083. meta_edc-0.2.24.dist-info/RECORD +0 -849
  1084. meta_edc-0.2.24.dist-info/WHEEL +0 -5
  1085. meta_edc-0.2.24.dist-info/top_level.txt +0 -19
  1086. meta_labs/tests/test_labs.py +0 -27
  1087. meta_labs/tests/test_reportables.py +0 -16
  1088. meta_labs/tests/urls.py +0 -4
  1089. meta_lists/tests/test_lists.py +0 -8
  1090. meta_pharmacy/models.py +0 -0
  1091. meta_prn/tests/__init__.py +0 -0
  1092. meta_prn/tests/tests/__init__.py +0 -0
  1093. meta_prn/tests/tests/test_actions.py +0 -97
  1094. meta_prn/tests/tests/test_manager_order.py +0 -15
  1095. meta_prn/tests/tests/test_pregnancy_notification.py +0 -94
  1096. meta_prn/tests/urls.py +0 -10
  1097. meta_rando/tests/__init__.py +0 -0
  1098. meta_rando/tests/tests/__init__.py +0 -0
  1099. meta_rando/tests/tests/test_randomizers.py +0 -58
  1100. meta_reference/__init__.py +0 -0
  1101. meta_reference/apps.py +0 -6
  1102. meta_reference/migrations/__init__.py +0 -0
  1103. meta_reference/reference_model_configs.py +0 -5
  1104. meta_reports/models.py +0 -0
  1105. meta_reports/tests/__init__.py +0 -0
  1106. meta_reports/tests/holidays.csv +0 -15
  1107. meta_reports/tests/test_reports.py +0 -36
  1108. meta_reports/tests/urls.py +0 -4
  1109. meta_screening/offline_models.py +0 -3
  1110. meta_screening/tests/__init__.py +0 -0
  1111. meta_screening/tests/holidays.csv +0 -15
  1112. meta_screening/tests/meta_test_case_mixin.py +0 -214
  1113. meta_screening/tests/options.py +0 -124
  1114. meta_screening/tests/tests/__init__.py +0 -0
  1115. meta_screening/tests/tests/test_forms.py +0 -397
  1116. meta_screening/tests/tests/test_screening_part_one.py +0 -108
  1117. meta_screening/tests/tests/test_screening_part_three.py +0 -437
  1118. meta_screening/tests/tests/test_screening_part_two.py +0 -86
  1119. meta_sites/tests/__init__.py +0 -0
  1120. meta_sites/tests/test_sites.py +0 -16
  1121. meta_sites/tests/urls.py +0 -4
  1122. meta_subject/admin/blood_results/blood_results_glu_admin.py +0 -30
  1123. meta_subject/admin/blood_results/blood_results_lipid_admin.py +0 -21
  1124. meta_subject/forms/blood_results/blood_results_glu_form.py +0 -26
  1125. meta_subject/forms/health_economics_simple_form.py +0 -19
  1126. meta_subject/tests/__init__.py +0 -0
  1127. meta_subject/tests/holidays.csv +0 -15
  1128. meta_subject/tests/tests/__init__.py +0 -0
  1129. meta_subject/tests/tests/test_egfr.py +0 -222
  1130. meta_subject/tests/tests/test_followup.py +0 -50
  1131. meta_subject/tests/tests/test_manager_order.py +0 -31
  1132. meta_subject/tests/tests/test_medication_adherence.py +0 -72
  1133. meta_subject/tests/tests/test_metadata_rules.py +0 -105
  1134. meta_subject/tests/tests/test_mnsi.py +0 -246
  1135. meta_subject/tests/tests/test_patient_history_form.py +0 -71
  1136. meta_subject/tests/tests/test_physical_exam.py +0 -81
  1137. meta_subject/tests/tests/test_sf12.py +0 -164
  1138. meta_subject/tests/tests/test_study_medication.py +0 -230
  1139. meta_subject/tests/urls.py +0 -25
  1140. meta_visit_schedule/tests/__init__.py +0 -0
  1141. meta_visit_schedule/tests/tests/__init__.py +0 -0
  1142. meta_visit_schedule/tests/tests/test_schedule.py +0 -177
  1143. meta_visit_schedule/tests/urls.py +0 -4
  1144. tests/__init__.py +0 -0
  1145. tests/etc/randomization_list.csv +0 -241
  1146. tests/etc/user-aes-local.key +0 -0
  1147. tests/etc/user-aes-restricted.key +0 -1
  1148. tests/etc/user-rsa-local-private.pem +0 -27
  1149. tests/etc/user-rsa-local-public.pem +0 -9
  1150. tests/etc/user-rsa-restricted-private.pem +0 -27
  1151. tests/etc/user-rsa-restricted-public.pem +0 -9
  1152. tests/etc/user-salt-local.key +0 -0
  1153. tests/etc/user-salt-restricted.key +0 -0
  1154. tests/holidays.csv +0 -15
  1155. /meta_ae/templates/meta_ae/{bootstrap3/ae_initial_description.html → aeinitial_description.html} +0 -0
  1156. {meta_ae/tests → meta_analytics}/__init__.py +0 -0
  1157. /meta_ae/tests/tests/__init__.py → /meta_analytics/constants.py +0 -0
  1158. {meta_consent/tests → meta_analytics/tables/enrolled}/__init__.py +0 -0
  1159. /meta_dashboard/templates/meta_dashboard/{bootstrap3/buttons → buttons}/add_consent_button.html +0 -0
  1160. /meta_dashboard/templates/meta_dashboard/{bootstrap3/buttons → buttons}/refusal_button.html +0 -0
  1161. {meta_consent/tests/tests → meta_edc/migrations}/__init__.py +0 -0
  1162. {meta_edc-0.2.24.dist-info → meta_edc-1.4.0.dist-info/licenses}/LICENSE +0 -0
  1163. {meta_dashboard/tests → meta_pharmacy/management}/__init__.py +0 -0
  1164. {meta_dashboard/tests/tests → meta_pharmacy/management/commands}/__init__.py +0 -0
  1165. {meta_edc/tests → meta_reports/management}/__init__.py +0 -0
  1166. {meta_edc/tests/tests → meta_reports/management/commands}/__init__.py +0 -0
  1167. /meta_edc-0.2.24.dist-info/AUTHORS → /meta_reports/utils.py +0 -0
  1168. /meta_labs/tests/__init__.py → /meta_subject/management/__init__py.py +0 -0
  1169. /meta_lists/tests/__init__.py → /meta_subject/management/commands/__init__py.py +0 -0
@@ -0,0 +1,146 @@
1
+ from django.contrib.sites.models import Site
2
+ from django.core.exceptions import ObjectDoesNotExist
3
+ from django_pylabels.models import LabelSpecification
4
+ from edc_pharmacy.models import (
5
+ Assignment,
6
+ Container,
7
+ ContainerType,
8
+ ContainerUnits,
9
+ Formulation,
10
+ Location,
11
+ Product,
12
+ Supplier,
13
+ )
14
+ from edc_pylabels.models import LabelConfiguration
15
+ from edc_pylabels.site_label_configs import site_label_configs
16
+
17
+
18
+ def update_initial_pharmacy_data():
19
+ update_assignment()
20
+ update_container()
21
+ update_location()
22
+ update_product()
23
+ update_supplier()
24
+ update_labels()
25
+
26
+
27
+ def update_assignment():
28
+ """For a trial with just active and placebo.
29
+
30
+ Better to get these labels from edc_randomizer.
31
+ """
32
+ for assignment in ["placebo", "active"]:
33
+ try:
34
+ Assignment.objects.get(name=assignment)
35
+ except ObjectDoesNotExist:
36
+ Assignment.objects.create(name=assignment, display_name=assignment.title())
37
+
38
+
39
+ def update_container():
40
+ """Here we order a number of tablets. The manufacturer sends
41
+ the order in large containers, barrels of about 30K tablets
42
+ per barrel. We repack/decant into bottles of 128 tablets
43
+ """
44
+ tablet_type = ContainerType.objects.get(name="tablet")
45
+ bottle_type = ContainerType.objects.get(name="bottle")
46
+ units = ContainerUnits.objects.get(name="tablet")
47
+ opts = {
48
+ "tablet": dict(
49
+ name="tablet",
50
+ display_name="Tablet",
51
+ container_type=tablet_type,
52
+ units=units,
53
+ qty=1,
54
+ may_order_as=True,
55
+ max_per_subject=0,
56
+ ),
57
+ "bottle30k": dict(
58
+ name="bottle30k",
59
+ display_name="Barrel 30K",
60
+ container_type=bottle_type,
61
+ units=units,
62
+ qty=30000,
63
+ may_receive_as=True,
64
+ max_per_subject=0,
65
+ ),
66
+ "bottle128": dict(
67
+ name="bottle128",
68
+ display_name="Bottle 128",
69
+ container_type=bottle_type,
70
+ units=units,
71
+ qty=128,
72
+ max_per_subject=3,
73
+ may_repack_as=True,
74
+ may_request_as=True,
75
+ may_dispense_as=True,
76
+ ),
77
+ }
78
+ for name, data in opts.items():
79
+ try:
80
+ Container.objects.get(name=name)
81
+ except ObjectDoesNotExist:
82
+ Container.objects.create(**data)
83
+
84
+
85
+ def update_location():
86
+ """Base the locations on the sites in the trial plus
87
+ a "central" pharmacy"""
88
+ for obj in Location.objects.exclude(name="central"):
89
+ obj.site_id = Site.objects.get(name=obj.name).id
90
+ obj.save(update_fields=["site_id"])
91
+
92
+
93
+ def update_product():
94
+ """Define the product, in this case just two; active and placebo.
95
+
96
+ Formulation is defined before running this script.
97
+
98
+ In this case the formulation is just the study drug/IMP.
99
+ """
100
+ formulation = Formulation.objects.get()
101
+ active = Assignment.objects.get(name="active")
102
+ placebo = Assignment.objects.get(name="placebo")
103
+ try:
104
+ Product.objects.get(formulation=formulation, assignment=active)
105
+ except ObjectDoesNotExist:
106
+ Product(assignment=active, formulation=formulation).save()
107
+ try:
108
+ Product.objects.get(formulation=formulation, assignment=placebo)
109
+ except ObjectDoesNotExist:
110
+ Product(assignment=placebo, formulation=formulation).save()
111
+
112
+
113
+ def update_supplier():
114
+ """In this case MERCK"""
115
+ try:
116
+ Supplier.objects.get(name="merck")
117
+ except ObjectDoesNotExist:
118
+ Supplier(name="merck").save()
119
+
120
+
121
+ def update_labels():
122
+ """The default label spec is a 2 x 6 label sheet
123
+
124
+ Add "label congigs" as registered in the "site_label_configs"
125
+ global. In this case there are three labels:
126
+ * a bulk label for the barrels
127
+ * a generic vertical label for decanted stock (bottles of 128)
128
+ * a patient label for allocated stock (bottles of 128)
129
+
130
+ The patient label will be placed over the generic vertical label
131
+ once the stock item is allocated to a subject.
132
+ """
133
+ try:
134
+ default = LabelSpecification.objects.get(name="default")
135
+ except ObjectDoesNotExist:
136
+ LabelSpecification().save()
137
+ default = LabelSpecification.objects.get(name="default")
138
+
139
+ for name in site_label_configs.registry:
140
+ LabelConfiguration.objects.create(name=name, label_specification=default)
141
+ for label_configuration in LabelConfiguration.objects.filter(name__contains="patient"):
142
+ label_configuration.requires_allocation = True
143
+ label_configuration.save()
144
+
145
+
146
+ __all__ = ["update_initial_pharmacy_data"]
meta_prn/action_items.py CHANGED
@@ -1,9 +1,9 @@
1
+ from clinicedc_constants import HIGH_PRIORITY, NOT_SURE, TBD, YES
1
2
  from django.apps import apps as django_apps
2
3
  from django.utils.safestring import mark_safe
3
4
  from edc_action_item.action_with_notification import ActionWithNotification
4
5
  from edc_action_item.site_action_items import site_action_items
5
6
  from edc_adverse_event.constants import DEATH_REPORT_ACTION
6
- from edc_constants.constants import HIGH_PRIORITY, NOT_SURE, TBD, YES
7
7
  from edc_lab_results import BLOOD_RESULTS_RFT_ACTION
8
8
  from edc_ltfu.constants import LTFU_ACTION
9
9
  from edc_offstudy.constants import END_OF_STUDY_ACTION
@@ -12,18 +12,22 @@ from edc_protocol_incident.action_items import (
12
12
  )
13
13
  from edc_transfer.action_items import SubjectTransferAction as BaseSubjectTransferAction
14
14
  from edc_transfer.constants import SUBJECT_TRANSFER_ACTION
15
+ from edc_visit_schedule.constants import OFFSCHEDULE_ACTION
15
16
 
16
17
  from meta_subject.constants import (
17
18
  DELIVERY_ACTION,
19
+ DM_FOLLOWUP_ACTION,
18
20
  MISSED_VISIT_ACTION,
19
21
  URINE_PREGNANCY_ACTION,
20
22
  )
21
23
 
22
24
  from .constants import (
23
- OFFSCHEDULE_ACTION,
25
+ DM_REFFERAL_ACTION,
26
+ OFFSCHEDULE_DM_REFERRAL_ACTION,
24
27
  OFFSCHEDULE_PREGNANCY_ACTION,
25
28
  OFFSTUDY_MEDICATION_ACTION,
26
29
  PREGNANCY_NOTIFICATION_ACTION,
30
+ REFERRAL,
27
31
  UNBLINDING_REQUEST_ACTION,
28
32
  UNBLINDING_REVIEW_ACTION,
29
33
  )
@@ -34,12 +38,13 @@ class OffscheduleAction(ActionWithNotification):
34
38
  name = OFFSCHEDULE_ACTION
35
39
  display_name = "Submit Off-Schedule"
36
40
  notification_display_name = "Off-Schedule"
37
- parent_action_names = [
41
+ parent_action_names = (
38
42
  UNBLINDING_REVIEW_ACTION,
39
43
  DEATH_REPORT_ACTION,
40
44
  LTFU_ACTION,
41
45
  BLOOD_RESULTS_RFT_ACTION,
42
- ]
46
+ SUBJECT_TRANSFER_ACTION,
47
+ )
43
48
  reference_model = "meta_prn.offschedule"
44
49
  show_link_to_changelist = True
45
50
  admin_site_name = "meta_prn_admin"
@@ -56,7 +61,7 @@ class OffscheduleAction(ActionWithNotification):
56
61
  if pregnancy_notification and pregnancy_notification.may_contact in [YES, NOT_SURE]:
57
62
  next_actions = [OFFSTUDY_MEDICATION_ACTION]
58
63
  else:
59
- next_actions = [OFFSTUDY_MEDICATION_ACTION, END_OF_STUDY_ACTION]
64
+ next_actions = [OFFSTUDY_MEDICATION_ACTION]
60
65
  return next_actions
61
66
 
62
67
 
@@ -64,12 +69,13 @@ class OffschedulePregnancyAction(ActionWithNotification):
64
69
  name = OFFSCHEDULE_PREGNANCY_ACTION
65
70
  display_name = "Submit Off-Schedule (Pregnancy)"
66
71
  notification_display_name = "Off-Schedule (Pregnancy)"
67
- parent_action_names = [
72
+ parent_action_names = (
68
73
  UNBLINDING_REVIEW_ACTION,
69
74
  DEATH_REPORT_ACTION,
70
75
  LTFU_ACTION,
76
+ SUBJECT_TRANSFER_ACTION,
71
77
  DELIVERY_ACTION,
72
- ]
78
+ )
73
79
  reference_model = "meta_prn.offschedulepregnancy"
74
80
  show_link_to_changelist = True
75
81
  admin_site_name = "meta_prn_admin"
@@ -77,18 +83,39 @@ class OffschedulePregnancyAction(ActionWithNotification):
77
83
  singleton = True
78
84
 
79
85
  def get_next_actions(self):
80
- next_actions = [END_OF_STUDY_ACTION]
81
- return next_actions
86
+ return [END_OF_STUDY_ACTION]
87
+
88
+
89
+ class OffscheduleDmReferralAction(ActionWithNotification):
90
+ name = OFFSCHEDULE_DM_REFERRAL_ACTION
91
+ display_name = "Submit Off-Schedule (Diabetes Referral)"
92
+ notification_display_name = "Off-Schedule (Diabetes Referral)"
93
+ parent_action_names = (
94
+ DM_FOLLOWUP_ACTION,
95
+ DEATH_REPORT_ACTION,
96
+ LTFU_ACTION,
97
+ SUBJECT_TRANSFER_ACTION,
98
+ )
99
+ reference_model = "meta_prn.offscheduledmreferral"
100
+ show_link_to_changelist = True
101
+ admin_site_name = "meta_prn_admin"
102
+ priority = HIGH_PRIORITY
103
+ singleton = True
104
+
105
+ def get_next_actions(self):
106
+ return [END_OF_STUDY_ACTION]
82
107
 
83
108
 
84
109
  class EndOfStudyAction(ActionWithNotification):
85
110
  name = END_OF_STUDY_ACTION
86
111
  display_name = "Submit End of Study Report"
87
112
  notification_display_name = "End of Study Report"
88
- parent_action_names = [
113
+ parent_action_names = (
89
114
  OFFSCHEDULE_ACTION,
115
+ OFFSTUDY_MEDICATION_ACTION,
90
116
  OFFSCHEDULE_PREGNANCY_ACTION,
91
- ]
117
+ OFFSCHEDULE_DM_REFERRAL_ACTION,
118
+ )
92
119
  reference_model = "meta_prn.endofstudy"
93
120
  show_link_to_changelist = True
94
121
  admin_site_name = "meta_prn_admin"
@@ -100,7 +127,7 @@ class LossToFollowupAction(PregnancyActionItemMixin, ActionWithNotification):
100
127
  name = LTFU_ACTION
101
128
  display_name = "Submit Loss to Follow Up Report"
102
129
  notification_display_name = " Loss to Follow Up Report"
103
- parent_action_names = [MISSED_VISIT_ACTION]
130
+ parent_action_names = (MISSED_VISIT_ACTION,)
104
131
  reference_model = "meta_prn.losstofollowup"
105
132
  show_link_to_changelist = True
106
133
  show_link_to_add = True
@@ -109,15 +136,14 @@ class LossToFollowupAction(PregnancyActionItemMixin, ActionWithNotification):
109
136
  singleton = True
110
137
 
111
138
  def get_next_actions(self):
112
- next_actions = [self.get_next_offschedule_action(), OFFSTUDY_MEDICATION_ACTION]
113
- return next_actions
139
+ return [self.get_next_offschedule_action(), OFFSTUDY_MEDICATION_ACTION]
114
140
 
115
141
 
116
142
  class PregnancyNotificationAction(ActionWithNotification):
117
143
  name = PREGNANCY_NOTIFICATION_ACTION
118
144
  display_name = "Submit Pregnancy Notification"
119
145
  notification_display_name = "Pregnancy Notification"
120
- parent_action_names = [URINE_PREGNANCY_ACTION]
146
+ parent_action_names = (URINE_PREGNANCY_ACTION,)
121
147
  reference_model = "meta_prn.pregnancynotification"
122
148
  show_link_to_changelist = True
123
149
  show_link_to_add = True
@@ -125,16 +151,34 @@ class PregnancyNotificationAction(ActionWithNotification):
125
151
  priority = HIGH_PRIORITY
126
152
 
127
153
 
154
+ class DmReferralAction(ActionWithNotification):
155
+ """Action to put subject on dm_referral schedule"""
156
+
157
+ name = DM_REFFERAL_ACTION
158
+ display_name = "Diabetes referral"
159
+ notification_display_name = "Diabetes referral"
160
+ parent_action_names = (OFFSTUDY_MEDICATION_ACTION,)
161
+ reference_model = "meta_prn.dmreferral"
162
+ show_link_to_changelist = True
163
+ show_link_to_add = True
164
+ admin_site_name = "meta_prn_admin"
165
+ priority = HIGH_PRIORITY
166
+ singleton = True
167
+
168
+ def get_next_actions(self):
169
+ return [DM_FOLLOWUP_ACTION]
170
+
171
+
128
172
  class OffStudyMedicationAction(ActionWithNotification):
129
173
  name = OFFSTUDY_MEDICATION_ACTION
130
174
  display_name = "Withdrawal Study Medication"
131
175
  notification_display_name = "Withdrawal Study Medication"
132
- parent_action_names = [
176
+ parent_action_names = (
133
177
  OFFSCHEDULE_ACTION,
134
178
  LTFU_ACTION,
135
179
  SUBJECT_TRANSFER_ACTION,
136
180
  DEATH_REPORT_ACTION,
137
- ]
181
+ )
138
182
  reference_model = "meta_prn.offstudymedication"
139
183
  show_link_to_changelist = True
140
184
  show_link_to_add = True
@@ -142,12 +186,19 @@ class OffStudyMedicationAction(ActionWithNotification):
142
186
  priority = HIGH_PRIORITY
143
187
  singleton = True
144
188
 
189
+ def get_next_actions(self):
190
+ if self.reference_obj.reason == REFERRAL:
191
+ next_actions = [DM_REFFERAL_ACTION]
192
+ else:
193
+ next_actions = [END_OF_STUDY_ACTION]
194
+ return next_actions
195
+
145
196
 
146
197
  class UnblindingRequestAction(ActionWithNotification):
147
198
  name = UNBLINDING_REQUEST_ACTION
148
199
  display_name = "Unblinding request"
149
200
  notification_display_name = " Unblinding request"
150
- parent_action_names = []
201
+ parent_action_names = ()
151
202
  reference_model = "edc_unblinding.unblindingrequest"
152
203
  show_link_to_changelist = True
153
204
  show_link_to_add = True
@@ -155,20 +206,18 @@ class UnblindingRequestAction(ActionWithNotification):
155
206
  priority = HIGH_PRIORITY
156
207
 
157
208
  def get_next_actions(self):
158
- next_actions = []
159
- next_actions = self.append_to_next_if_required(
160
- next_actions=next_actions,
209
+ return self.append_to_next_if_required(
210
+ next_actions=[],
161
211
  action_name=UNBLINDING_REVIEW_ACTION,
162
212
  required=self.reference_obj.approved == TBD,
163
213
  )
164
- return next_actions
165
214
 
166
215
 
167
216
  class UnblindingReviewAction(PregnancyActionItemMixin, ActionWithNotification):
168
217
  name = UNBLINDING_REVIEW_ACTION
169
218
  display_name = "Unblinding review pending"
170
219
  notification_display_name = " Unblinding review needed"
171
- parent_action_names = [UNBLINDING_REQUEST_ACTION]
220
+ parent_action_names = (UNBLINDING_REQUEST_ACTION,)
172
221
  reference_model = "edc_unblinding.unblindingreview"
173
222
  show_link_to_changelist = True
174
223
  admin_site_name = "edc_unblinding_admin"
@@ -180,13 +229,11 @@ class UnblindingReviewAction(PregnancyActionItemMixin, ActionWithNotification):
180
229
  )
181
230
 
182
231
  def get_next_actions(self):
183
- next_actions = []
184
- next_actions = self.append_to_next_if_required(
185
- next_actions=next_actions,
232
+ return self.append_to_next_if_required(
233
+ next_actions=[],
186
234
  action_name=self.get_next_offschedule_action(),
187
235
  required=self.reference_obj.approved == YES,
188
236
  )
189
- return next_actions
190
237
 
191
238
 
192
239
  class SubjectTransferAction(PregnancyActionItemMixin, BaseSubjectTransferAction):
@@ -212,3 +259,5 @@ site_action_items.register(SubjectTransferAction)
212
259
  site_action_items.register(UnblindingRequestAction)
213
260
  site_action_items.register(UnblindingReviewAction)
214
261
  site_action_items.register(OffStudyMedicationAction)
262
+ site_action_items.register(DmReferralAction)
263
+ site_action_items.register(OffscheduleDmReferralAction)
@@ -1,10 +1,29 @@
1
+ from .dm_referral_admin import DmReferralAdmin
1
2
  from .end_of_study_admin import EndOfStudyAdmin
2
3
  from .loss_to_followup_admin import LossToFollowupAdmin
3
4
  from .off_study_medication_admin import OffStudyMedicationAdmin
4
5
  from .offschedule_admin import OffScheduleAdmin
6
+ from .offschedule_dm_referral_admin import OffScheduleDmReferralAdmin
5
7
  from .offschedule_postnatal_admin import OffSchedulePostnatalAdmin
6
8
  from .offschedule_pregnancy_admin import OffSchedulePregnancyAdmin
7
9
  from .onschedule_admin import OnScheduleAdmin
10
+ from .onschedule_dm_referral_admin import OnScheduleDmReferralAdmin
8
11
  from .pregnancy_notification_admin import PregnancyNotificationAdmin
9
- from .protocol_incident_admin import ProtocolDeviationViolationAdmin
12
+ from .protocol_incident_admin import ProtocolIncidentAdmin
10
13
  from .subject_transfer_admin import SubjectTransferAdmin
14
+
15
+ __all__ = [
16
+ "DmReferralAdmin",
17
+ "EndOfStudyAdmin",
18
+ "LossToFollowupAdmin",
19
+ "OffScheduleAdmin",
20
+ "OffScheduleDmReferralAdmin",
21
+ "OffSchedulePostnatalAdmin",
22
+ "OffSchedulePregnancyAdmin",
23
+ "OffStudyMedicationAdmin",
24
+ "OnScheduleAdmin",
25
+ "OnScheduleDmReferralAdmin",
26
+ "PregnancyNotificationAdmin",
27
+ "ProtocolIncidentAdmin",
28
+ "SubjectTransferAdmin",
29
+ ]
@@ -0,0 +1,50 @@
1
+ from django.contrib import admin
2
+ from django_audit_fields.admin import audit_fieldset_tuple
3
+ from edc_action_item.fieldsets import action_fieldset_tuple
4
+ from edc_action_item.modeladmin_mixins import ActionItemModelAdminMixin
5
+ from edc_model_admin.dashboard import ModelAdminSubjectDashboardMixin
6
+ from edc_model_admin.history import SimpleHistoryAdmin
7
+ from edc_sites.admin import SiteModelAdminMixin
8
+
9
+ from ..admin_site import meta_prn_admin
10
+ from ..forms import DmReferralForm
11
+ from ..models import DmReferral
12
+
13
+
14
+ @admin.register(DmReferral, site=meta_prn_admin)
15
+ class DmReferralAdmin(
16
+ SiteModelAdminMixin,
17
+ ModelAdminSubjectDashboardMixin,
18
+ ActionItemModelAdminMixin,
19
+ SimpleHistoryAdmin,
20
+ ):
21
+ form = DmReferralForm
22
+
23
+ fieldsets = (
24
+ (None, {"fields": ("subject_identifier", "report_datetime")}),
25
+ ("Referral to Diabetes clinic", {"fields": ("referral_date",)}),
26
+ (
27
+ "Diabetes diagnosis",
28
+ {
29
+ "fields": ("referral_note",),
30
+ },
31
+ ),
32
+ action_fieldset_tuple,
33
+ audit_fieldset_tuple,
34
+ )
35
+
36
+ list_display = (
37
+ "subject_identifier",
38
+ "dashboard",
39
+ "report_datetime",
40
+ "referral_date_as_col",
41
+ )
42
+
43
+ list_filter = (
44
+ "report_datetime",
45
+ "referral_date",
46
+ )
47
+
48
+ @admin.display(description="Referral date", ordering="referral_date")
49
+ def referral_date_as_col(self, obj=None):
50
+ return obj.referral_date
@@ -1,17 +1,19 @@
1
- from typing import Tuple
2
-
1
+ from clinicedc_constants import OTHER
3
2
  from dateutil.relativedelta import relativedelta
4
3
  from django.contrib import admin
4
+ from django.template.loader import render_to_string
5
5
  from django.utils.html import format_html
6
+ from django.utils.safestring import mark_safe
6
7
  from django_audit_fields.admin import audit_fieldset_tuple
7
- from edc_action_item import ActionItemModelAdminMixin, action_fieldset_tuple
8
- from edc_constants.constants import OTHER
9
- from edc_data_manager.modeladmin_mixins import DataManagerModelAdminMixin
8
+ from edc_action_item.fieldsets import action_fieldset_tuple
9
+ from edc_action_item.modeladmin_mixins import ActionItemModelAdminMixin
10
10
  from edc_model_admin.dashboard import ModelAdminSubjectDashboardMixin
11
11
  from edc_model_admin.history import SimpleHistoryAdmin
12
+ from edc_sites.admin import SiteModelAdminMixin
12
13
 
13
14
  from meta_ae.models import DeathReport
14
15
  from meta_consent.models import SubjectConsent
16
+ from meta_lists.models import OffstudyReasons
15
17
 
16
18
  from ..admin_site import meta_prn_admin
17
19
  from ..forms import EndOfStudyForm
@@ -20,19 +22,22 @@ from ..models import EndOfStudy, LossToFollowup
20
22
 
21
23
  @admin.register(EndOfStudy, site=meta_prn_admin)
22
24
  class EndOfStudyAdmin(
23
- DataManagerModelAdminMixin,
25
+ SiteModelAdminMixin,
24
26
  ModelAdminSubjectDashboardMixin,
25
27
  ActionItemModelAdminMixin,
26
28
  SimpleHistoryAdmin,
27
29
  ):
28
-
29
30
  additional_instructions = format_html(
30
- "Note: if the patient is <i>deceased</i>, complete form "
31
- "`{}` before completing this form. "
32
- "<BR>If the patient is </i>lost to follow up</i>, complete form "
33
- "`{}` before completing this form.",
34
- DeathReport._meta.verbose_name,
35
- LossToFollowup._meta.verbose_name,
31
+ "{html}",
32
+ html=mark_safe( # noqa: S308
33
+ render_to_string(
34
+ "meta_prn/eos/additional_instructions.html",
35
+ context=dict(
36
+ death_report=DeathReport._meta.verbose_name,
37
+ ltfu=LossToFollowup._meta.verbose_name,
38
+ ),
39
+ )
40
+ ), # nosec #B703 # B308
36
41
  )
37
42
 
38
43
  form = EndOfStudyForm
@@ -106,13 +111,18 @@ class EndOfStudyAdmin(
106
111
  audit_fieldset_tuple,
107
112
  )
108
113
 
109
- radio_fields = {
114
+ radio_fields = { # noqa: RUF012
110
115
  "offstudy_reason": admin.VERTICAL,
111
116
  "clinical_withdrawal_reason": admin.VERTICAL,
112
117
  "toxicity_withdrawal_reason": admin.VERTICAL,
113
118
  }
114
119
 
115
- def get_list_display(self, request) -> Tuple[str, ...]:
120
+ def formfield_for_foreignkey(self, db_field, request, **kwargs):
121
+ if db_field.name == "offstudy_reason":
122
+ kwargs["queryset"] = OffstudyReasons.objects.order_by("display_index")
123
+ return super().formfield_for_foreignkey(db_field, request, **kwargs)
124
+
125
+ def get_list_display(self, request) -> tuple[str, ...]:
116
126
  list_display = super().get_list_display(request)
117
127
  custom_fields = (
118
128
  "subject_identifier",
@@ -123,15 +133,15 @@ class EndOfStudyAdmin(
123
133
  "reason",
124
134
  )
125
135
  return custom_fields + tuple(
126
- f for f in list_display if f not in custom_fields + ("__str__",)
136
+ f for f in list_display if f not in (*custom_fields, "__str__")
127
137
  )
128
138
 
129
- def get_list_filter(self, request) -> Tuple[str, ...]:
139
+ def get_list_filter(self, request) -> tuple[str, ...]:
130
140
  list_filter = super().get_list_filter(request)
131
141
  custom_fields = ("offstudy_reason", "last_seen_date")
132
142
  return custom_fields + tuple(f for f in list_filter if f not in custom_fields)
133
143
 
134
- def get_search_fields(self, request) -> Tuple[str, ...]:
144
+ def get_search_fields(self, request) -> tuple[str, ...]:
135
145
  search_fields = super().get_search_fields(request)
136
146
  custom_fields = ("subject_identifier",)
137
147
  return tuple(set(custom_fields + search_fields))
@@ -1,9 +1,10 @@
1
1
  from django.contrib import admin
2
2
  from django_audit_fields.admin import audit_fieldset_tuple
3
- from edc_action_item import ActionItemModelAdminMixin, action_fieldset_tuple
4
- from edc_data_manager.modeladmin_mixins import DataManagerModelAdminMixin
3
+ from edc_action_item.fieldsets import action_fieldset_tuple
4
+ from edc_action_item.modeladmin_mixins import ActionItemModelAdminMixin
5
5
  from edc_model_admin.dashboard import ModelAdminSubjectDashboardMixin
6
6
  from edc_model_admin.history import SimpleHistoryAdmin
7
+ from edc_sites.admin import SiteModelAdminMixin
7
8
 
8
9
  from ..admin_site import meta_prn_admin
9
10
  from ..forms import LossToFollowupForm
@@ -12,12 +13,11 @@ from ..models import LossToFollowup
12
13
 
13
14
  @admin.register(LossToFollowup, site=meta_prn_admin)
14
15
  class LossToFollowupAdmin(
15
- DataManagerModelAdminMixin,
16
+ SiteModelAdminMixin,
16
17
  ActionItemModelAdminMixin,
17
18
  ModelAdminSubjectDashboardMixin,
18
19
  SimpleHistoryAdmin,
19
20
  ):
20
-
21
21
  form = LossToFollowupForm
22
22
 
23
23
  fieldsets = (
@@ -55,7 +55,7 @@ class LossToFollowupAdmin(
55
55
  "number_consecutive_missed_visits",
56
56
  )
57
57
 
58
- radio_fields = {
58
+ radio_fields = { # noqa: RUF012
59
59
  "home_visited": admin.VERTICAL,
60
60
  "loss_category": admin.VERTICAL,
61
61
  }
@@ -1,11 +1,10 @@
1
- from typing import Tuple
2
-
3
1
  from django.contrib import admin
4
2
  from django_audit_fields.admin import audit_fieldset_tuple
5
- from edc_action_item import ActionItemModelAdminMixin, action_fieldset_tuple
6
- from edc_data_manager.modeladmin_mixins import DataManagerModelAdminMixin
3
+ from edc_action_item.fieldsets import action_fieldset_tuple
4
+ from edc_action_item.modeladmin_mixins import ActionItemModelAdminMixin
7
5
  from edc_model_admin.dashboard import ModelAdminSubjectDashboardMixin
8
6
  from edc_model_admin.history import SimpleHistoryAdmin
7
+ from edc_sites.admin import SiteModelAdminMixin
9
8
 
10
9
  from ..admin_site import meta_prn_admin
11
10
  from ..forms import OffStudyMedicationForm
@@ -14,12 +13,11 @@ from ..models import OffStudyMedication
14
13
 
15
14
  @admin.register(OffStudyMedication, site=meta_prn_admin)
16
15
  class OffStudyMedicationAdmin(
17
- DataManagerModelAdminMixin,
16
+ SiteModelAdminMixin,
18
17
  ModelAdminSubjectDashboardMixin,
19
18
  ActionItemModelAdminMixin,
20
19
  SimpleHistoryAdmin,
21
20
  ):
22
-
23
21
  form = OffStudyMedicationForm
24
22
 
25
23
  fieldsets = (
@@ -41,7 +39,7 @@ class OffStudyMedicationAdmin(
41
39
  audit_fieldset_tuple,
42
40
  )
43
41
 
44
- radio_fields = {
42
+ radio_fields = { # noqa: RUF012
45
43
  "reason": admin.VERTICAL,
46
44
  }
47
45
 
@@ -49,7 +47,7 @@ class OffStudyMedicationAdmin(
49
47
 
50
48
  search_fields = ("subject_identifier",)
51
49
 
52
- def get_list_display(self, request) -> Tuple[str, ...]:
50
+ def get_list_display(self, request) -> tuple[str, ...]:
53
51
  list_display = super().get_list_display(request)
54
52
  custom_fields = (
55
53
  "subject_identifier",
@@ -59,7 +57,7 @@ class OffStudyMedicationAdmin(
59
57
  )
60
58
  return custom_fields + tuple(f for f in list_display if f not in custom_fields)
61
59
 
62
- def get_list_filter(self, request) -> Tuple[str, ...]:
60
+ def get_list_filter(self, request) -> tuple[str, ...]:
63
61
  list_filter = super().get_list_filter(request)
64
62
  custom_fields = (
65
63
  "medications",