meta-edc 0.2.24__py3-none-any.whl → 1.4.0__py3-none-any.whl

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  1. meta_ae/action_items.py +40 -29
  2. meta_ae/admin/__init__.py +12 -2
  3. meta_ae/admin/ae_followup_admin.py +2 -2
  4. meta_ae/admin/ae_initial_admin.py +7 -4
  5. meta_ae/admin/ae_local_review_admin.py +2 -2
  6. meta_ae/admin/ae_sponsor_review_admin.py +2 -2
  7. meta_ae/admin/ae_susar_admin.py +3 -3
  8. meta_ae/admin/ae_tmg_admin.py +2 -2
  9. meta_ae/admin/death_report_admin.py +3 -3
  10. meta_ae/admin/death_report_tmg_admin.py +4 -2
  11. meta_ae/admin/death_report_tmg_second_admin.py +4 -2
  12. meta_ae/admin/hospitalization_admin.py +15 -0
  13. meta_ae/admin/modeladmin_mixins.py +14 -16
  14. meta_ae/baker_recipes.py +5 -6
  15. meta_ae/choices.py +1 -1
  16. meta_ae/forms/__init__.py +14 -0
  17. meta_ae/forms/death_report_form.py +1 -2
  18. meta_ae/forms/hospitalization_form.py +11 -0
  19. meta_ae/forms/modelform_mixins.py +2 -2
  20. meta_ae/list_data.py +2 -1
  21. meta_ae/migrations/0001_initial.py +27 -28
  22. meta_ae/migrations/0002_auto_20191024_1000.py +0 -1
  23. meta_ae/migrations/0003_auto_20191102_0033.py +0 -1
  24. meta_ae/migrations/0004_auto_20191114_0821.py +0 -1
  25. meta_ae/migrations/0005_auto_20210624_0225.py +0 -1
  26. meta_ae/migrations/0006_aelocalreview_aesponsorreview.py +5 -6
  27. meta_ae/migrations/0007_auto_20210911_2036.py +0 -1
  28. meta_ae/migrations/0008_auto_20211011_1657.py +0 -1
  29. meta_ae/migrations/0009_auto_20220307_1929.py +0 -1
  30. meta_ae/migrations/0010_auto_20220704_1841.py +0 -1
  31. meta_ae/migrations/0011_alter_aefollowup_action_identifier_and_more.py +0 -1
  32. meta_ae/migrations/0012_auto_20220826_0258.py +0 -1
  33. meta_ae/migrations/0013_auto_20220826_0322.py +0 -1
  34. meta_ae/migrations/0014_auto_20220826_0406.py +0 -1
  35. meta_ae/migrations/0015_auto_20220907_0157.py +0 -1
  36. meta_ae/migrations/0016_rename_narrative_aetmg_investigator_narrative_and_more.py +128 -0
  37. meta_ae/migrations/0017_auto_20221130_2257.py +29 -0
  38. meta_ae/migrations/0018_alter_deathreporttmg_cause_of_death_agreed_and_more.py +45 -0
  39. meta_ae/migrations/0019_alter_aefollowup_managers_alter_aeinitial_managers_and_more.py +529 -0
  40. meta_ae/migrations/0020_alter_aesusar_options_alter_aetmg_options_and_more.py +532 -0
  41. meta_ae/migrations/0021_alter_aefollowup_site_alter_aeinitial_site_and_more.py +158 -0
  42. meta_ae/migrations/0022_historicalhospitalization_hospitalization.py +590 -0
  43. meta_ae/migrations/0023_alter_aefollowup_action_identifier_and_more.py +2017 -0
  44. meta_ae/model_mixins/__init__.py +2 -0
  45. meta_ae/model_mixins/ae_review_model_mixin.py +8 -8
  46. meta_ae/model_mixins/death_report_model_mixin.py +3 -4
  47. meta_ae/models/__init__.py +14 -0
  48. meta_ae/models/ae_initial.py +4 -0
  49. meta_ae/models/death_report.py +0 -1
  50. meta_ae/models/death_report_tmg_second.py +0 -1
  51. meta_ae/models/hospitalization.py +21 -0
  52. meta_ae/models/managers.py +1 -4
  53. meta_ae/pdf_reports/__init__.py +4 -2
  54. meta_ae/pdf_reports/ae_pdf_report.py +7 -0
  55. meta_ae/pdf_reports/death_pdf_report.py +7 -0
  56. meta_ae/pdf_reports/meta_pdf_report_mixin.py +4 -2
  57. meta_ae/templatetags/meta_ae_extras.py +5 -6
  58. meta_analytics/.DS_Store +0 -0
  59. meta_analytics/README.rst +16 -0
  60. meta_analytics/dataframes/__init__.py +46 -0
  61. meta_analytics/dataframes/constants.py +36 -0
  62. meta_analytics/dataframes/get_eos_df.py +38 -0
  63. meta_analytics/dataframes/get_glucose_df.py +166 -0
  64. meta_analytics/dataframes/get_glucose_fbg_df.py +26 -0
  65. meta_analytics/dataframes/get_glucose_fbg_ogtt_df.py +21 -0
  66. meta_analytics/dataframes/get_last_imp_visits_df.py +103 -0
  67. meta_analytics/dataframes/glucose_endpoints/__init__.py +4 -0
  68. meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +184 -0
  69. meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +407 -0
  70. meta_analytics/dataframes/screening/__init__.py +4 -0
  71. meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +19 -0
  72. meta_analytics/dataframes/screening/get_screening_df.py +156 -0
  73. meta_analytics/dataframes/utils.py +74 -0
  74. meta_analytics/get_tables.py +80 -0
  75. meta_analytics/tables/__init__.py +4 -0
  76. meta_analytics/tables/eligible.py +106 -0
  77. meta_analytics/tables/enrolled/glucose.py +27 -0
  78. meta_analytics/tables/has_dm.py +61 -0
  79. meta_analytics/utils.py +81 -0
  80. meta_auth/auth_objects.py +34 -5
  81. meta_auth/auths.py +21 -6
  82. meta_consent/action_items.py +22 -3
  83. meta_consent/admin/__init__.py +8 -1
  84. meta_consent/admin/actions/__init__.py +2 -0
  85. meta_consent/admin/actions/create_missing_prescriptions.py +2 -2
  86. meta_consent/admin/list_filters.py +22 -0
  87. meta_consent/admin/modeladmin_mixins.py +148 -0
  88. meta_consent/admin/subject_consent_admin.py +6 -134
  89. meta_consent/admin/subject_consent_v1_admin.py +19 -0
  90. meta_consent/admin/subject_consent_v1_ext_admin.py +93 -0
  91. meta_consent/baker_recipes.py +11 -11
  92. meta_consent/consents.py +27 -8
  93. meta_consent/constants.py +1 -0
  94. meta_consent/form_validators/__init__.py +3 -0
  95. meta_consent/form_validators/subject_consent_form_validator.py +30 -0
  96. meta_consent/forms/__init__.py +10 -1
  97. meta_consent/forms/subject_consent_form.py +26 -46
  98. meta_consent/forms/subject_consent_v1_ext_form.py +47 -0
  99. meta_consent/forms/subject_consent_v1_form.py +26 -0
  100. meta_consent/forms/subject_reconsent_form.py +4 -4
  101. meta_consent/locale/lg/LC_MESSAGES/django.po +69 -0
  102. meta_consent/locale/sw/LC_MESSAGES/django.po +70 -0
  103. meta_consent/management/commands/create_missing_prescriptions.py +5 -3
  104. meta_consent/migrations/0001_initial.py +9 -10
  105. meta_consent/migrations/0002_auto_20191024_1000.py +0 -1
  106. meta_consent/migrations/0003_auto_20200325_0901.py +0 -1
  107. meta_consent/migrations/0004_auto_20210624_0225.py +0 -1
  108. meta_consent/migrations/0005_alter_subjectconsent_options.py +0 -1
  109. meta_consent/migrations/0006_auto_20210911_2036.py +0 -1
  110. meta_consent/migrations/0007_auto_20220128_1719.py +0 -1
  111. meta_consent/migrations/0008_auto_20220412_2151.py +0 -1
  112. meta_consent/migrations/0009_auto_20220704_1841.py +0 -1
  113. meta_consent/migrations/0010_alter_historicalsubjectreconsent_action_identifier_and_more.py +0 -1
  114. meta_consent/migrations/0011_auto_20220826_0258.py +0 -1
  115. meta_consent/migrations/0012_auto_20220826_0322.py +0 -1
  116. meta_consent/migrations/0013_auto_20220826_0406.py +0 -1
  117. meta_consent/migrations/0014_alter_subjectconsent_managers.py +1 -2
  118. meta_consent/migrations/0015_auto_20220914_0542.py +0 -1
  119. meta_consent/migrations/0016_auto_20220914_0547.py +0 -2
  120. meta_consent/migrations/0017_auto_20220929_1742.py +3 -3
  121. meta_consent/migrations/0018_alter_subjectconsent_options_and_more.py +170 -0
  122. meta_consent/migrations/0019_alter_subjectconsent_options_and_more.py +191 -0
  123. meta_consent/migrations/0020_historicalsubjectconsent_model_name_and_more.py +34 -0
  124. meta_consent/migrations/0021_auto_20240111_0442.py +17 -0
  125. meta_consent/migrations/0022_alter_historicalsubjectconsent_site_and_more.py +36 -0
  126. meta_consent/migrations/0023_subjectconsentv1_and_more.py +86 -0
  127. meta_consent/migrations/0024_historicalsubjectconsentv1.py +595 -0
  128. meta_consent/migrations/0025_alter_historicalsubjectconsent_first_name_and_more.py +151 -0
  129. meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +535 -0
  130. meta_consent/migrations/0027_auto_20250111_0344.py +30 -0
  131. meta_consent/migrations/0028_historicalsubjectconsentv1ext_assessment_score_and_more.py +162 -0
  132. meta_consent/migrations/0029_alter_historicalsubjectconsentv1ext_agrees_to_extension_and_more.py +33 -0
  133. meta_consent/migrations/0030_auto_20250120_2114.py +40 -0
  134. meta_consent/migrations/0031_alter_historicalsubjectconsent_guardian_name_and_more.py +124 -0
  135. meta_consent/migrations/0032_alter_historicalsubjectconsent_device_created_and_more.py +678 -0
  136. meta_consent/migrations/0033_historicalsubjectconsentspfq_subjectconsentspfq.py +615 -0
  137. meta_consent/migrations/0034_remove_subjectconsentspfq_site_and_more.py +23 -0
  138. meta_consent/migrations/0035_alter_historicalsubjectconsent_consent_definition_name_and_more.py +43 -0
  139. meta_consent/models/__init__.py +11 -0
  140. meta_consent/models/model_mixins.py +1 -2
  141. meta_consent/models/signals.py +68 -52
  142. meta_consent/models/subject_consent.py +9 -20
  143. meta_consent/models/subject_consent_v1.py +15 -0
  144. meta_consent/models/subject_consent_v1_ext.py +34 -0
  145. meta_consent/models/subject_reconsent.py +6 -7
  146. meta_dashboard/apps.py +0 -40
  147. meta_dashboard/locale/lg/LC_MESSAGES/django.po +30 -0
  148. meta_dashboard/locale/sw/LC_MESSAGES/django.po +31 -0
  149. meta_dashboard/navbars.py +12 -14
  150. meta_dashboard/patterns.py +1 -1
  151. meta_dashboard/templates/meta_dashboard/{bootstrap3/buttons → buttons}/dashboard_button.html +1 -1
  152. meta_dashboard/templates/meta_dashboard/{bootstrap3/buttons → buttons}/eligibility_button.html +1 -1
  153. meta_dashboard/templates/meta_dashboard/{bootstrap3/buttons → buttons}/screening_button.html +1 -1
  154. meta_dashboard/templates/meta_dashboard/{bootstrap3/screening → screening}/listboard.html +18 -17
  155. meta_dashboard/templates/meta_dashboard/subject/dashboard/sidebar.html +24 -0
  156. meta_dashboard/templates/meta_dashboard/{bootstrap3/subject → subject}/dashboard/top_bar.html +1 -1
  157. meta_dashboard/templates/meta_dashboard/subject/dashboard.html +14 -0
  158. meta_dashboard/templates/meta_dashboard/{bootstrap3/subject → subject}/listboard.html +14 -6
  159. meta_dashboard/templatetags/meta_dashboard_extras.py +77 -78
  160. meta_dashboard/urls.py +10 -10
  161. meta_dashboard/view_utils/__init__.py +13 -0
  162. meta_dashboard/view_utils/subject_screening_button.py +114 -0
  163. meta_dashboard/views/__init__.py +8 -0
  164. meta_dashboard/views/ae/__init__.py +2 -0
  165. meta_dashboard/views/ae/ae_listboard_view.py +3 -4
  166. meta_dashboard/views/ae/death_report_listboard_view.py +4 -4
  167. meta_dashboard/views/screening/__init__.py +2 -0
  168. meta_dashboard/views/screening/listboard_view.py +5 -16
  169. meta_dashboard/views/subject/__init__.py +2 -0
  170. meta_dashboard/views/subject/dashboard/__init__.py +2 -0
  171. meta_dashboard/views/subject/dashboard/dashboard_view.py +41 -3
  172. meta_dashboard/views/subject/listboard/__init__.py +2 -0
  173. meta_dashboard/views/subject/listboard/listboard_view.py +8 -12
  174. meta_data_manager/handlers.py +0 -1
  175. meta_edc/__init__.py +10 -0
  176. meta_edc/admin.py +3 -4
  177. meta_edc/celery.py +6 -14
  178. meta_edc/celery_live.py +19 -0
  179. meta_edc/celery_uat.py +25 -0
  180. meta_edc/management/commands/update_forms_reference.py +16 -17
  181. meta_edc/meta_version.py +2 -2
  182. meta_edc/navbars.py +17 -12
  183. meta_edc/settings/debug.py +30 -9
  184. meta_edc/settings/defaults.py +145 -94
  185. meta_edc/settings/live.py +5 -10
  186. meta_edc/settings/logging.py +10 -3
  187. meta_edc/settings/minimal.py +5 -5
  188. meta_edc/settings/uat.py +4 -13
  189. meta_edc/templates/meta_edc/{bootstrap3/base.html → base.html} +1 -1
  190. meta_edc/templates/meta_edc/{bootstrap3/home.html → home.html} +14 -8
  191. meta_edc/urls.py +10 -4
  192. meta_edc/utils.py +3 -1
  193. meta_edc/views/__init__.py +2 -0
  194. meta_edc/views/home_view.py +6 -7
  195. meta_edc/wsgi.py +1 -1
  196. meta_edc/wsgi_live.py +1 -1
  197. meta_edc/wsgi_uat.py +1 -1
  198. meta_edc-1.4.0.dist-info/METADATA +174 -0
  199. meta_edc-1.4.0.dist-info/RECORD +1164 -0
  200. meta_edc-1.4.0.dist-info/WHEEL +4 -0
  201. meta_labs/list_data.py +2 -2
  202. meta_labs/reportables.py +80 -11
  203. meta_lists/admin.py +30 -0
  204. meta_lists/list_data.py +60 -5
  205. meta_lists/migrations/0001_initial.py +0 -1
  206. meta_lists/migrations/0002_auto_20191026_2231.py +0 -1
  207. meta_lists/migrations/0003_auto_20191102_0033.py +0 -1
  208. meta_lists/migrations/0004_auto_20191102_1859.py +0 -1
  209. meta_lists/migrations/0005_auto_20191104_0930.py +0 -1
  210. meta_lists/migrations/0006_auto_20200514_1959.py +0 -1
  211. meta_lists/migrations/0007_auto_20200516_2356.py +0 -1
  212. meta_lists/migrations/0008_auto_20200528_1517.py +3 -4
  213. meta_lists/migrations/0009_auto_20200613_2041.py +0 -1
  214. meta_lists/migrations/0010_auto_20200617_1738.py +0 -1
  215. meta_lists/migrations/0011_auto_20210624_0225.py +0 -1
  216. meta_lists/migrations/0012_auto_20210728_1809.py +0 -1
  217. meta_lists/migrations/0013_transferreasons_and_more.py +0 -1
  218. meta_lists/migrations/0014_auto_20220913_2139.py +0 -1
  219. meta_lists/migrations/0015_abnormalfootappearanceobservations_extra_value_and_more.py +67 -0
  220. meta_lists/migrations/0016_alter_abnormalfootappearanceobservations_options_and_more.py +617 -0
  221. meta_lists/migrations/0017_complications_dmmedications_dmtreatments_and_more.py +365 -0
  222. meta_lists/migrations/0018_missedreferralreasons.py +73 -0
  223. meta_lists/migrations/0019_auto_20250128_0143.py +48 -0
  224. meta_lists/migrations/0020_alter_abnormalfootappearanceobservations_extra_value_and_more.py +404 -0
  225. meta_lists/models.py +36 -0
  226. meta_pharmacy/admin/__init__.py +7 -0
  227. meta_pharmacy/admin/rx_admin.py +76 -0
  228. meta_pharmacy/admin/substitutions_admin.py +67 -0
  229. meta_pharmacy/admin_site.py +9 -0
  230. meta_pharmacy/apps.py +5 -0
  231. meta_pharmacy/constants.py +10 -0
  232. meta_pharmacy/forms/__init__.py +4 -0
  233. meta_pharmacy/forms/rx_form.py +15 -0
  234. meta_pharmacy/forms/substitutions_form.py +56 -0
  235. meta_pharmacy/label_configs.py +30 -0
  236. meta_pharmacy/labels/__init__.py +7 -0
  237. meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +61 -0
  238. meta_pharmacy/labels/draw_label_for_subject_with_code128.py +14 -0
  239. meta_pharmacy/labels/draw_label_with_test_data.py +26 -0
  240. meta_pharmacy/labels/label_data.py +13 -0
  241. meta_pharmacy/labels/print_sheets.py +95 -0
  242. meta_pharmacy/list_data.py +8 -0
  243. meta_pharmacy/management/commands/update_initial_pharmacy_data.py +11 -0
  244. meta_pharmacy/migrations/0001_initial.py +32 -0
  245. meta_pharmacy/migrations/0002_initial.py +682 -0
  246. meta_pharmacy/migrations/0003_auto_20240909_2335.py +65 -0
  247. meta_pharmacy/migrations/0004_alter_historicalsubstitutions_report_datetime_and_more.py +23 -0
  248. meta_pharmacy/migrations/0005_auto_20240911_0352.py +17 -0
  249. meta_pharmacy/migrations/0006_lotnumber_label.py +280 -0
  250. meta_pharmacy/migrations/0007_lotnumber_medication.py +24 -0
  251. meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +389 -0
  252. meta_pharmacy/migrations/0009_remove_historicalrx_slug.py +17 -0
  253. meta_pharmacy/migrations/0010_alter_historicallabeldata_device_created_and_more.py +382 -0
  254. meta_pharmacy/models/__init__.py +10 -0
  255. meta_pharmacy/models/label_data.py +37 -0
  256. meta_pharmacy/models/rx.py +18 -0
  257. meta_pharmacy/models/rx_label.py +38 -0
  258. meta_pharmacy/models/substitutions.py +88 -0
  259. meta_pharmacy/prepare_meta_pharmacy.py +1 -1
  260. meta_pharmacy/urls.py +8 -0
  261. meta_pharmacy/utils/__init__.py +3 -0
  262. meta_pharmacy/utils/update_initial_pharmacy_data.py +146 -0
  263. meta_prn/action_items.py +76 -27
  264. meta_prn/admin/__init__.py +20 -1
  265. meta_prn/admin/dm_referral_admin.py +50 -0
  266. meta_prn/admin/end_of_study_admin.py +28 -18
  267. meta_prn/admin/loss_to_followup_admin.py +5 -5
  268. meta_prn/admin/off_study_medication_admin.py +7 -9
  269. meta_prn/admin/offschedule_admin.py +14 -14
  270. meta_prn/admin/offschedule_dm_referral_admin.py +48 -0
  271. meta_prn/admin/offschedule_postnatal_admin.py +17 -10
  272. meta_prn/admin/offschedule_pregnancy_admin.py +20 -12
  273. meta_prn/admin/onschedule_admin.py +9 -11
  274. meta_prn/admin/onschedule_dm_referral_admin.py +38 -0
  275. meta_prn/admin/pregnancy_notification_admin.py +13 -11
  276. meta_prn/admin/protocol_incident_admin.py +6 -104
  277. meta_prn/admin/subject_transfer_admin.py +3 -2
  278. meta_prn/baker_recipes.py +15 -8
  279. meta_prn/choices.py +15 -10
  280. meta_prn/constants.py +5 -2
  281. meta_prn/form_validators/__init__.py +5 -0
  282. meta_prn/form_validators/end_of_study.py +65 -21
  283. meta_prn/form_validators/protocol_incident.py +1 -2
  284. meta_prn/forms/__init__.py +15 -0
  285. meta_prn/forms/dm_referral_form.py +34 -0
  286. meta_prn/forms/end_of_study_form.py +1 -2
  287. meta_prn/forms/loss_to_followup_form.py +1 -2
  288. meta_prn/forms/off_study_medication_form.py +2 -3
  289. meta_prn/forms/offschedule_dm_referral_form.py +35 -0
  290. meta_prn/forms/offschedule_form.py +31 -1
  291. meta_prn/forms/offschedule_pregnancy_form.py +0 -1
  292. meta_prn/forms/pregnancy_notification_form.py +16 -19
  293. meta_prn/forms/subject_transfer_form.py +0 -1
  294. meta_prn/list_data.py +3 -3
  295. meta_prn/migrations/0001_initial.py +25 -26
  296. meta_prn/migrations/0002_auto_20191024_1000.py +0 -1
  297. meta_prn/migrations/0003_auto_20200120_2020.py +0 -1
  298. meta_prn/migrations/0004_auto_20200403_0332.py +0 -1
  299. meta_prn/migrations/0005_auto_20200524_1944.py +0 -1
  300. meta_prn/migrations/0006_auto_20210624_0225.py +0 -1
  301. meta_prn/migrations/0007_auto_20210721_0335.py +0 -1
  302. meta_prn/migrations/0008_auto_20210910_0238.py +0 -1
  303. meta_prn/migrations/0009_auto_20210910_0239.py +0 -1
  304. meta_prn/migrations/0010_auto_20210910_1906.py +0 -1
  305. meta_prn/migrations/0011_auto_20210910_1911.py +1 -2
  306. meta_prn/migrations/0012_auto_20210911_0004.py +1 -2
  307. meta_prn/migrations/0013_auto_20210911_2036.py +0 -1
  308. meta_prn/migrations/0014_auto_20211003_1709.py +0 -1
  309. meta_prn/migrations/0015_auto_20211104_1447.py +0 -1
  310. meta_prn/migrations/0016_auto_20220128_1719.py +0 -1
  311. meta_prn/migrations/0017_auto_20220307_1929.py +5 -6
  312. meta_prn/migrations/0018_auto_20220309_2106.py +9 -10
  313. meta_prn/migrations/0019_auto_20220309_2230.py +0 -1
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  597. meta_screening/migrations/0045_historicalscreeningpartone_contact_number_and_more.py +0 -1
  598. meta_screening/migrations/0046_historicalscreeningpartone_hba1c_datetime_and_more.py +0 -1
  599. meta_screening/migrations/0047_historicalscreeningpartone_appt_datetime_repeat_and_more.py +0 -1
  600. meta_screening/migrations/0048_rename_appt_datetime_repeat_historicalscreeningpartone_repeat_appt_datetime_and_more.py +0 -1
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  602. meta_screening/migrations/0050_historicalscreeningpartone_agree_to_p3_and_more.py +0 -1
  603. meta_screening/migrations/0051_alter_historicalscreeningpartone_advised_to_fast_and_more.py +0 -1
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  608. meta_screening/migrations/0056_alter_historicalscreeningpartone_agree_to_p3_and_more.py +0 -1
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  611. meta_screening/migrations/0059_alter_icpreferral_managers_and_more.py +323 -0
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  613. meta_screening/migrations/0061_alter_historicalicpreferral_site_and_more.py +128 -0
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  616. meta_screening/migrations/0064_remove_historicalscreeningpartone_fasting_duration_minutes_and_more.py +126 -0
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  623. meta_screening/model_mixins/creatinine_fields_model_mixin.py +2 -4
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  625. meta_screening/model_mixins/part_one_fields_model_mixin.py +17 -21
  626. meta_screening/model_mixins/part_three_fields_model_mixin.py +19 -33
  627. meta_screening/model_mixins/part_two_fields_model_mixin.py +19 -18
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  629. meta_screening/models/icp_referral.py +9 -8
  630. meta_screening/models/proxy_models.py +9 -1
  631. meta_screening/models/signals.py +10 -11
  632. meta_screening/models/subject_refusal.py +5 -5
  633. meta_screening/models/subject_screening.py +19 -3
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  637. meta_subject/action_items.py +58 -27
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  640. meta_subject/admin/blood_results/__init__.py +10 -2
  641. meta_subject/admin/blood_results/blood_results_fbc_admin.py +6 -3
  642. meta_subject/admin/blood_results/blood_results_hba1c_admin.py +6 -3
  643. meta_subject/admin/blood_results/blood_results_ins_admin.py +6 -3
  644. meta_subject/admin/blood_results/blood_results_lft_admin.py +6 -3
  645. meta_subject/admin/blood_results/blood_results_lipids_admin.py +24 -0
  646. meta_subject/admin/blood_results/blood_results_rft_admin.py +8 -8
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  649. meta_subject/admin/concomitant_medication_admin.py +3 -3
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  652. meta_subject/admin/diabetes/dm_endpoint_admin.py +35 -0
  653. meta_subject/admin/diabetes/dm_followup_admin.py +97 -0
  654. meta_subject/admin/egfr_drop_notification_admin.py +1 -4
  655. meta_subject/admin/eq5d3l_admin.py +4 -4
  656. meta_subject/admin/fields.py +5 -5
  657. meta_subject/admin/fieldsets.py +5 -5
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  659. meta_subject/admin/followup_vitals_admin.py +31 -7
  660. meta_subject/admin/glucose_admin.py +37 -5
  661. meta_subject/admin/glucose_fbg_admin.py +89 -0
  662. meta_subject/admin/health_economics/__init__.py +4 -0
  663. meta_subject/admin/{health_economics_simple_admin.py → health_economics/health_economics_simple_admin.py} +7 -7
  664. meta_subject/admin/health_economics/health_economics_update_admin.py +101 -0
  665. meta_subject/admin/hepatitis_test_admin.py +4 -4
  666. meta_subject/admin/hiv_exit_review_admin.py +55 -0
  667. meta_subject/admin/list_filters.py +76 -0
  668. meta_subject/admin/malaria_test_admin.py +4 -29
  669. meta_subject/admin/medication_adherence_admin.py +5 -10
  670. meta_subject/admin/mnsi_admin.py +9 -8
  671. meta_subject/admin/modeladmin.py +9 -8
  672. meta_subject/admin/next_appointment_admin.py +19 -0
  673. meta_subject/admin/other_arv_regimens_admin.py +10 -14
  674. meta_subject/admin/patient_history_admin.py +7 -7
  675. meta_subject/admin/physical_exam_admin.py +4 -4
  676. meta_subject/admin/pregnancy_update_admin.py +4 -4
  677. meta_subject/admin/sf12_admin.py +3 -3
  678. meta_subject/admin/study_medication_admin.py +56 -11
  679. meta_subject/admin/subject_requisition_admin.py +5 -5
  680. meta_subject/admin/subject_visit_admin.py +5 -3
  681. meta_subject/admin/subject_visit_missed_admin.py +5 -4
  682. meta_subject/admin/urine_dipstick_test_admin.py +4 -4
  683. meta_subject/admin/urine_pregnancy_admin.py +4 -4
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  690. meta_subject/form_validators/delivery_form_validator.py +83 -0
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  704. meta_subject/forms/blood_results/blood_results_hba1c_form.py +1 -2
  705. meta_subject/forms/blood_results/blood_results_ins_form.py +0 -1
  706. meta_subject/forms/blood_results/blood_results_lft_form.py +0 -1
  707. meta_subject/forms/blood_results/{blood_results_lipid_form.py → blood_results_lipids_form.py} +5 -6
  708. meta_subject/forms/blood_results/blood_results_rft_form.py +60 -5
  709. meta_subject/forms/complications_glycemia_form.py +1 -7
  710. meta_subject/forms/concomitant_medication_form.py +1 -7
  711. meta_subject/forms/delivery_form.py +2 -82
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  880. meta_subject/migrations/0131_auto_20220722_0411.py +29 -25
  881. meta_subject/migrations/0132_auto_20220722_1825.py +10 -7
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  883. meta_subject/migrations/0134_auto_20220722_2211.py +0 -1
  884. meta_subject/migrations/0135_auto_20220722_2212.py +41 -37
  885. meta_subject/migrations/0136_egfrdropnotification_creatinine_quantifier_and_more.py +0 -1
  886. meta_subject/migrations/0137_alter_egfrdropnotification_egfr_percent_change_and_more.py +0 -1
  887. meta_subject/migrations/0138_alter_glucose_fbg_datetime_and_more.py +0 -1
  888. meta_subject/migrations/0139_alter_bloodresultsins_ins_units_and_more.py +0 -1
  889. meta_subject/migrations/0140_alter_bloodresultsfbc_action_identifier_and_more.py +0 -1
  890. meta_subject/migrations/0141_auto_20220826_0258.py +0 -1
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  906. meta_subject/migrations/0157_remove_bloodresultsfbc_crf_status_and_more.py +512 -0
  907. meta_subject/migrations/0158_alter_followupexamination_attended_clinic_and_more.py +52 -0
  908. meta_subject/migrations/0159_alter_bloodresultsfbc_results_abnormal_and_more.py +152 -0
  909. meta_subject/migrations/0160_alter_healtheconomicssimple_education_certificate_and_more.py +44 -0
  910. meta_subject/migrations/0161_alter_birthoutcomes_options_and_more.py +3307 -0
  911. meta_subject/migrations/0162_alter_followupexamination_abdominal_tenderness_and_more.py +66 -0
  912. meta_subject/migrations/0163_alter_birthoutcomes_options_and_more.py +3470 -0
  913. meta_subject/migrations/0164_dmreferralfollowup_historicaldmreferralfollowup.py +709 -0
  914. meta_subject/migrations/0165_alter_dmreferralfollowup_healthcare_workers.py +22 -0
  915. meta_subject/migrations/0166_rename_dm_medications_other_dmreferralfollowup_other_dm_medications_and_more.py +184 -0
  916. meta_subject/migrations/0167_rename_healthcare_workers_other_dmreferralfollowup_other_healthcare_workers_and_more.py +25 -0
  917. meta_subject/migrations/0168_alter_dmreferralfollowup_last_missed_pill_and_more.py +53 -0
  918. meta_subject/migrations/0169_alter_dmreferralfollowup_options_and_more.py +94 -0
  919. meta_subject/migrations/0170_remove_glucose_repeat_fbg_and_more.py +52 -0
  920. meta_subject/migrations/0171_alter_glucose_endpoint_today_and_more.py +80 -0
  921. meta_subject/migrations/0172_remove_historicalbloodresultsglu_action_item_and_more.py +67 -0
  922. meta_subject/migrations/0173_alter_glucosefbg_options_and_more.py +117 -0
  923. meta_subject/migrations/0174_remove_glucosefbg_glucose_abnormal_and_more.py +105 -0
  924. meta_subject/migrations/0175_auto_20240214_2239.py +23 -0
  925. meta_subject/migrations/0176_alter_glucosefbg_glucose_value_and_more.py +44 -0
  926. meta_subject/migrations/0177_alter_bloodresultslft_alp_value_and_more.py +91 -0
  927. meta_subject/migrations/0178_historicalhealtheconomicsupdate_and_more.py +719 -0
  928. meta_subject/migrations/0179_alter_birthoutcomes_consent_model_and_more.py +835 -0
  929. meta_subject/migrations/0180_dmreferralfollowup_missed_referral_reasons_and_more.py +62 -0
  930. meta_subject/migrations/0181_dmreferralfollowup_action_identifier_and_more.py +143 -0
  931. meta_subject/migrations/0182_rename_dmreferralfollowup_dmfollowup_and_more.py +54 -0
  932. meta_subject/migrations/0183_alter_dmfollowup_on_dm_medications_and_more.py +31 -0
  933. meta_subject/migrations/0184_alter_glucose_options_and_more.py +31 -0
  934. meta_subject/migrations/0185_alter_bloodresultsins_fasting_duration_str_and_more.py +82 -0
  935. meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py +54 -0
  936. meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py +442 -0
  937. meta_subject/migrations/0188_historicaldmdxresult_dmdxresult.py +394 -0
  938. meta_subject/migrations/0189_alter_dmdxresult_options_and_more.py +116 -0
  939. meta_subject/migrations/0190_dmdiagnosis_dx_no_tmg_reason_and_more.py +65 -0
  940. meta_subject/migrations/0191_alter_dmdiagnosis_dx_no_tmg_reason_and_more.py +70 -0
  941. meta_subject/migrations/0192_rename_glucose_quantifier_glucosefbg_fbg_quantifier_and_more.py +44 -0
  942. meta_subject/migrations/0193_alter_glucosefbg_fbg_value_and_more.py +44 -0
  943. meta_subject/migrations/0194_remove_glucosefbg_assay_datetime_and_more.py +166 -0
  944. meta_subject/migrations/0195_alter_glucosefbg_fbg_datetime_and_more.py +27 -0
  945. meta_subject/migrations/0196_glucosefbg_fbg_not_performed_reason_and_more.py +49 -0
  946. meta_subject/migrations/0197_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
  947. meta_subject/migrations/0198_alter_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
  948. meta_subject/migrations/0199_auto_20240516_0247.py +18 -0
  949. meta_subject/migrations/0200_rename_fasting_duration_minutes_bloodresultsins_fasting_duration_delta_and_more.py +43 -0
  950. meta_subject/migrations/0201_alter_bloodresultsins_fasting_duration_delta_and_more.py +58 -0
  951. meta_subject/migrations/0202_auto_20240516_0315.py +32 -0
  952. meta_subject/migrations/0203_alter_bloodresultsins_fasting_duration_delta_and_more.py +67 -0
  953. meta_subject/migrations/0204_glucosefbg_repeat_fbg_date_and_more.py +27 -0
  954. meta_subject/migrations/0205_historicalsubjectrequisition_crf_status_and_more.py +80 -0
  955. meta_subject/migrations/0206_bloodresultsfbc_crf_status_and_more.py +62 -0
  956. meta_subject/migrations/0207_alter_historicalphysicalexam_waist_circumference_and_more.py +46 -0
  957. meta_subject/migrations/0208_birthoutcomes_crf_status_and_more.py +62 -0
  958. meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +36 -0
  959. meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py +123 -0
  960. meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py +45 -0
  961. meta_subject/migrations/0212_auto_20240827_2222.py +23 -0
  962. meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py +35 -0
  963. meta_subject/migrations/0214_historicalstudymedication_stock_codes_and_more.py +44 -0
  964. meta_subject/migrations/0215_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
  965. meta_subject/migrations/0216_historicalnextappointment_nextappointment.py +553 -0
  966. meta_subject/migrations/0217_alter_historicalnextappointment_appt_datetime_and_more.py +42 -0
  967. meta_subject/migrations/0218_alter_historicalnextappointment_appt_date_and_more.py +53 -0
  968. meta_subject/migrations/0219_remove_historicalnextappointment_allow_create_interim_and_more.py +92 -0
  969. meta_subject/migrations/0220_historicalbloodresultsgludummy_bloodresultsgludummy.py +825 -0
  970. meta_subject/migrations/0221_auto_20250402_1913.py +42 -0
  971. meta_subject/migrations/0222_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
  972. meta_subject/migrations/0223_bloodresultsfbc_errors_bloodresultsgludummy_errors_and_more.py +83 -0
  973. meta_subject/migrations/0224_bloodresultsfbc_abnormal_summary_and_more.py +153 -0
  974. meta_subject/migrations/0225_followupvitals_waist_circumference_and_more.py +46 -0
  975. meta_subject/migrations/0226_followupvitals_waist_circumference_comment_and_more.py +97 -0
  976. meta_subject/migrations/0227_alter_followupvitals_waist_circumference_comment_and_more.py +97 -0
  977. meta_subject/migrations/0228_bloodresultshba1c_hba1c_datetime_and_more.py +2518 -0
  978. meta_subject/migrations/0229_alter_glucosefbg_consent_model_and_more.py +1918 -0
  979. meta_subject/migrations/0230_alter_historicaldelivery_action_identifier_and_more.py +1733 -0
  980. meta_subject/migrations/0231_alter_historicalmedicationadherence_consent_model_and_more.py +2054 -0
  981. meta_subject/migrations/0232_alter_patienthistory_concomitant_conditions_and_more.py +1170 -0
  982. meta_subject/migrations/0233_historicalspfq_spfq.py +1066 -0
  983. meta_subject/migrations/0234_remove_spfq_site_remove_spfq_subject_visit_and_more.py +27 -0
  984. meta_subject/migrations/0235_glucosefbg_endpoint_today_and_more.py +606 -0
  985. meta_subject/migrations/0236_alter_historicalhivexitreview_other_current_arv_regimen_and_more.py +58 -0
  986. meta_subject/migrations/0237_historicalhivexitreview_singleton_field_and_more.py +68 -0
  987. meta_subject/migrations/0238_historicalhivexitreview_available_and_more.py +88 -0
  988. meta_subject/model_mixins/__init__.py +10 -0
  989. meta_subject/model_mixins/arv_history_model_mixin.py +5 -46
  990. meta_subject/model_mixins/arv_review_model_mixin.py +53 -0
  991. meta_subject/model_mixins/search_slug_model_mixin.py +1 -2
  992. meta_subject/model_mixins/vitals_fields_model_mixin.py +33 -1
  993. meta_subject/models/__init__.py +61 -4
  994. meta_subject/models/birth_outcomes.py +17 -8
  995. meta_subject/models/blood_results/__init__.py +12 -2
  996. meta_subject/models/blood_results/blood_results_fbc.py +9 -4
  997. meta_subject/models/blood_results/blood_results_glu.py +9 -4
  998. meta_subject/models/blood_results/blood_results_hba1c.py +8 -2
  999. meta_subject/models/blood_results/blood_results_ins.py +8 -2
  1000. meta_subject/models/blood_results/blood_results_lft.py +8 -2
  1001. meta_subject/models/blood_results/{blood_results_lipid.py → blood_results_lipids.py} +11 -4
  1002. meta_subject/models/blood_results/blood_results_rft.py +7 -1
  1003. meta_subject/models/complications.py +1 -3
  1004. meta_subject/models/complications_glycemia.py +3 -4
  1005. meta_subject/models/concomitant_medication.py +0 -1
  1006. meta_subject/models/delivery.py +4 -6
  1007. meta_subject/models/diabetes/__init__.py +4 -0
  1008. meta_subject/models/diabetes/dm_endpoint.py +61 -0
  1009. meta_subject/models/diabetes/dm_followup.py +215 -0
  1010. meta_subject/models/diet_and_lifestyle.py +5 -5
  1011. meta_subject/models/egfr_drop_notification.py +0 -1
  1012. meta_subject/models/followup_examination.py +28 -32
  1013. meta_subject/models/followup_vitals.py +3 -4
  1014. meta_subject/models/glucose.py +50 -15
  1015. meta_subject/models/glucose_fbg.py +74 -0
  1016. meta_subject/models/glucose_review.py +15 -0
  1017. meta_subject/models/health_economics/__init__.py +5 -0
  1018. meta_subject/models/{health_economics.py → health_economics/health_economics.py} +13 -14
  1019. meta_subject/models/{health_economics_simple.py → health_economics/health_economics_simple.py} +3 -4
  1020. meta_subject/models/health_economics/health_economics_update.py +97 -0
  1021. meta_subject/models/hepatitis_test.py +2 -3
  1022. meta_subject/models/hiv_exit_review.py +44 -0
  1023. meta_subject/models/malaria_test.py +3 -31
  1024. meta_subject/models/next_appointment.py +15 -0
  1025. meta_subject/models/off_study_drug.py +0 -1
  1026. meta_subject/models/other_arv_regimens_detail.py +3 -5
  1027. meta_subject/models/patient_history.py +6 -8
  1028. meta_subject/models/physical_exam.py +6 -6
  1029. meta_subject/models/pregnancy_update.py +1 -2
  1030. meta_subject/models/sf12.py +0 -3
  1031. meta_subject/models/signals.py +32 -11
  1032. meta_subject/models/study_medication.py +0 -1
  1033. meta_subject/models/subject_requisition.py +3 -5
  1034. meta_subject/models/subject_visit.py +5 -8
  1035. meta_subject/models/subject_visit_missed.py +0 -1
  1036. meta_subject/models/todo.txt +1 -1
  1037. meta_subject/models/urine_dipstick_test.py +2 -3
  1038. meta_subject/models/urine_pregnancy.py +1 -2
  1039. meta_subject/static/meta_subject/slider.css +1 -1
  1040. meta_subject/templates/meta_subject/endpoint_review_instructions.html +6 -0
  1041. meta_subject/templates/meta_subject/widgets/slider.html +0 -1
  1042. meta_visit_schedule/constants.py +7 -1
  1043. meta_visit_schedule/visit_schedules/__init__.py +3 -1
  1044. meta_visit_schedule/visit_schedules/phase_three/__init__.py +2 -0
  1045. meta_visit_schedule/visit_schedules/phase_three/crfs.py +212 -95
  1046. meta_visit_schedule/visit_schedules/phase_three/crfs_pregnancy.py +2 -2
  1047. meta_visit_schedule/visit_schedules/phase_three/requisitions.py +30 -51
  1048. meta_visit_schedule/visit_schedules/phase_three/schedule.py +72 -7
  1049. meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +59 -0
  1050. meta_visit_schedule/visit_schedules/phase_three/schedule_pregnancy.py +7 -5
  1051. meta_visit_schedule/visit_schedules/phase_three/visit_schedule.py +3 -1
  1052. meta_ae/pdf_reports/ae_report.py +0 -8
  1053. meta_ae/pdf_reports/death_report.py +0 -8
  1054. meta_ae/tests/holidays.csv +0 -15
  1055. meta_ae/tests/tests/test_actions.py +0 -127
  1056. meta_ae/tests/urls.py +0 -10
  1057. meta_consent/admin/subject_reconsent_admin.py +0 -77
  1058. meta_consent/tests/holidays.csv +0 -15
  1059. meta_consent/tests/tests/test_form_validators.py +0 -85
  1060. meta_consent/tests/tests/test_subject_consent.py +0 -10
  1061. meta_consent/tests/urls.py +0 -18
  1062. meta_dashboard/model_wrappers/__init__.py +0 -8
  1063. meta_dashboard/model_wrappers/ae_initial_model_wrapper.py +0 -6
  1064. meta_dashboard/model_wrappers/death_report_model_wrapper.py +0 -15
  1065. meta_dashboard/model_wrappers/subject_refusal_model_wrapper.py +0 -16
  1066. meta_dashboard/model_wrappers/subject_screening_model_wrapper.py +0 -85
  1067. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard.html +0 -11
  1068. meta_dashboard/tests/admin.py +0 -22
  1069. meta_dashboard/tests/holidays.csv +0 -15
  1070. meta_dashboard/tests/tests/test_model_wrappers.py +0 -71
  1071. meta_dashboard/tests/urls.py +0 -59
  1072. meta_edc/tests/etc/randomization_list_phase_three.csv +0 -241
  1073. meta_edc/tests/etc/user-aes-local.key +0 -1
  1074. meta_edc/tests/etc/user-aes-restricted.key +0 -0
  1075. meta_edc/tests/etc/user-rsa-local-private.pem +0 -27
  1076. meta_edc/tests/etc/user-rsa-local-public.pem +0 -9
  1077. meta_edc/tests/etc/user-rsa-restricted-private.pem +0 -27
  1078. meta_edc/tests/etc/user-rsa-restricted-public.pem +0 -9
  1079. meta_edc/tests/etc/user-salt-local.key +0 -0
  1080. meta_edc/tests/etc/user-salt-restricted.key +0 -0
  1081. meta_edc/tests/tests/test_endpoints.py +0 -525
  1082. meta_edc-0.2.24.dist-info/METADATA +0 -180
  1083. meta_edc-0.2.24.dist-info/RECORD +0 -849
  1084. meta_edc-0.2.24.dist-info/WHEEL +0 -5
  1085. meta_edc-0.2.24.dist-info/top_level.txt +0 -19
  1086. meta_labs/tests/test_labs.py +0 -27
  1087. meta_labs/tests/test_reportables.py +0 -16
  1088. meta_labs/tests/urls.py +0 -4
  1089. meta_lists/tests/test_lists.py +0 -8
  1090. meta_pharmacy/models.py +0 -0
  1091. meta_prn/tests/__init__.py +0 -0
  1092. meta_prn/tests/tests/__init__.py +0 -0
  1093. meta_prn/tests/tests/test_actions.py +0 -97
  1094. meta_prn/tests/tests/test_manager_order.py +0 -15
  1095. meta_prn/tests/tests/test_pregnancy_notification.py +0 -94
  1096. meta_prn/tests/urls.py +0 -10
  1097. meta_rando/tests/__init__.py +0 -0
  1098. meta_rando/tests/tests/__init__.py +0 -0
  1099. meta_rando/tests/tests/test_randomizers.py +0 -58
  1100. meta_reference/__init__.py +0 -0
  1101. meta_reference/apps.py +0 -6
  1102. meta_reference/migrations/__init__.py +0 -0
  1103. meta_reference/reference_model_configs.py +0 -5
  1104. meta_reports/models.py +0 -0
  1105. meta_reports/tests/__init__.py +0 -0
  1106. meta_reports/tests/holidays.csv +0 -15
  1107. meta_reports/tests/test_reports.py +0 -36
  1108. meta_reports/tests/urls.py +0 -4
  1109. meta_screening/offline_models.py +0 -3
  1110. meta_screening/tests/__init__.py +0 -0
  1111. meta_screening/tests/holidays.csv +0 -15
  1112. meta_screening/tests/meta_test_case_mixin.py +0 -214
  1113. meta_screening/tests/options.py +0 -124
  1114. meta_screening/tests/tests/__init__.py +0 -0
  1115. meta_screening/tests/tests/test_forms.py +0 -397
  1116. meta_screening/tests/tests/test_screening_part_one.py +0 -108
  1117. meta_screening/tests/tests/test_screening_part_three.py +0 -437
  1118. meta_screening/tests/tests/test_screening_part_two.py +0 -86
  1119. meta_sites/tests/__init__.py +0 -0
  1120. meta_sites/tests/test_sites.py +0 -16
  1121. meta_sites/tests/urls.py +0 -4
  1122. meta_subject/admin/blood_results/blood_results_glu_admin.py +0 -30
  1123. meta_subject/admin/blood_results/blood_results_lipid_admin.py +0 -21
  1124. meta_subject/forms/blood_results/blood_results_glu_form.py +0 -26
  1125. meta_subject/forms/health_economics_simple_form.py +0 -19
  1126. meta_subject/tests/__init__.py +0 -0
  1127. meta_subject/tests/holidays.csv +0 -15
  1128. meta_subject/tests/tests/__init__.py +0 -0
  1129. meta_subject/tests/tests/test_egfr.py +0 -222
  1130. meta_subject/tests/tests/test_followup.py +0 -50
  1131. meta_subject/tests/tests/test_manager_order.py +0 -31
  1132. meta_subject/tests/tests/test_medication_adherence.py +0 -72
  1133. meta_subject/tests/tests/test_metadata_rules.py +0 -105
  1134. meta_subject/tests/tests/test_mnsi.py +0 -246
  1135. meta_subject/tests/tests/test_patient_history_form.py +0 -71
  1136. meta_subject/tests/tests/test_physical_exam.py +0 -81
  1137. meta_subject/tests/tests/test_sf12.py +0 -164
  1138. meta_subject/tests/tests/test_study_medication.py +0 -230
  1139. meta_subject/tests/urls.py +0 -25
  1140. meta_visit_schedule/tests/__init__.py +0 -0
  1141. meta_visit_schedule/tests/tests/__init__.py +0 -0
  1142. meta_visit_schedule/tests/tests/test_schedule.py +0 -177
  1143. meta_visit_schedule/tests/urls.py +0 -4
  1144. tests/__init__.py +0 -0
  1145. tests/etc/randomization_list.csv +0 -241
  1146. tests/etc/user-aes-local.key +0 -0
  1147. tests/etc/user-aes-restricted.key +0 -1
  1148. tests/etc/user-rsa-local-private.pem +0 -27
  1149. tests/etc/user-rsa-local-public.pem +0 -9
  1150. tests/etc/user-rsa-restricted-private.pem +0 -27
  1151. tests/etc/user-rsa-restricted-public.pem +0 -9
  1152. tests/etc/user-salt-local.key +0 -0
  1153. tests/etc/user-salt-restricted.key +0 -0
  1154. tests/holidays.csv +0 -15
  1155. /meta_ae/templates/meta_ae/{bootstrap3/ae_initial_description.html → aeinitial_description.html} +0 -0
  1156. {meta_ae/tests → meta_analytics}/__init__.py +0 -0
  1157. /meta_ae/tests/tests/__init__.py → /meta_analytics/constants.py +0 -0
  1158. {meta_consent/tests → meta_analytics/tables/enrolled}/__init__.py +0 -0
  1159. /meta_dashboard/templates/meta_dashboard/{bootstrap3/buttons → buttons}/add_consent_button.html +0 -0
  1160. /meta_dashboard/templates/meta_dashboard/{bootstrap3/buttons → buttons}/refusal_button.html +0 -0
  1161. {meta_consent/tests/tests → meta_edc/migrations}/__init__.py +0 -0
  1162. {meta_edc-0.2.24.dist-info → meta_edc-1.4.0.dist-info/licenses}/LICENSE +0 -0
  1163. {meta_dashboard/tests → meta_pharmacy/management}/__init__.py +0 -0
  1164. {meta_dashboard/tests/tests → meta_pharmacy/management/commands}/__init__.py +0 -0
  1165. {meta_edc/tests → meta_reports/management}/__init__.py +0 -0
  1166. {meta_edc/tests/tests → meta_reports/management/commands}/__init__.py +0 -0
  1167. /meta_edc-0.2.24.dist-info/AUTHORS → /meta_reports/utils.py +0 -0
  1168. /meta_labs/tests/__init__.py → /meta_subject/management/__init__py.py +0 -0
  1169. /meta_lists/tests/__init__.py → /meta_subject/management/commands/__init__py.py +0 -0
meta_ae/action_items.py CHANGED
@@ -1,7 +1,21 @@
1
+ from clinicedc_constants import (
2
+ CLOSED,
3
+ DEAD,
4
+ GRADE3,
5
+ GRADE4,
6
+ GRADE5,
7
+ HIGH_PRIORITY,
8
+ LTFU,
9
+ NO,
10
+ YES,
11
+ )
1
12
  from django.apps import apps as django_apps
2
13
  from django.core.exceptions import MultipleObjectsReturned, ObjectDoesNotExist
14
+ from django.utils.html import format_html
3
15
  from django.utils.safestring import mark_safe
4
- from edc_action_item import ActionWithNotification, site_action_items
16
+ from django.utils.translation import gettext as _
17
+ from edc_action_item.action_with_notification import ActionWithNotification
18
+ from edc_action_item.site_action_items import site_action_items
5
19
  from edc_adverse_event.constants import (
6
20
  AE_FOLLOWUP_ACTION,
7
21
  AE_INITIAL_ACTION,
@@ -10,17 +24,14 @@ from edc_adverse_event.constants import (
10
24
  DEATH_REPORT_ACTION,
11
25
  DEATH_REPORT_TMG_ACTION,
12
26
  )
13
- from edc_constants.constants import CLOSED, DEAD, HIGH_PRIORITY, NO, YES
14
- from edc_lab_results import BLOOD_RESULTS_LIPID_ACTION
15
27
  from edc_lab_results.constants import (
16
28
  BLOOD_RESULTS_FBC_ACTION,
17
29
  BLOOD_RESULTS_GLU_ACTION,
18
30
  BLOOD_RESULTS_LFT_ACTION,
31
+ BLOOD_RESULTS_LIPIDS_ACTION,
19
32
  BLOOD_RESULTS_RFT_ACTION,
20
33
  )
21
- from edc_ltfu.constants import LOST_TO_FOLLOWUP
22
34
  from edc_notification.utils import get_email_contacts
23
- from edc_reportable import GRADE3, GRADE4, GRADE5
24
35
  from edc_visit_schedule.utils import get_offschedule_models
25
36
 
26
37
  from meta_prn.constants import OFFSTUDY_MEDICATION_ACTION
@@ -32,22 +43,25 @@ class AeFollowupAction(ActionWithNotification):
32
43
  name = AE_FOLLOWUP_ACTION
33
44
  display_name = "Submit AE Followup Report"
34
45
  notification_display_name = "AE Followup Report"
35
- parent_action_names = [AE_INITIAL_ACTION, AE_FOLLOWUP_ACTION]
46
+ parent_action_names = (AE_INITIAL_ACTION, AE_FOLLOWUP_ACTION)
36
47
  reference_model = "meta_ae.aefollowup"
37
48
  related_reference_model = "meta_ae.aeinitial"
38
49
  related_reference_fk_attr = "ae_initial"
39
50
  create_by_user = False
40
51
  show_link_to_changelist = True
41
52
  admin_site_name = "meta_ae_admin"
42
- instructions = mark_safe( # nosec B308, B703
43
- "Upon submission the TMG group will be notified "
44
- f'by email at <a href="mailto:{get_email_contacts("tmg") or "#"}">'
45
- f'{get_email_contacts("tmg") or "unknown"}</a>'
53
+ instructions = format_html(
54
+ _(
55
+ "Upon submission the TMG group will be notified "
56
+ 'by email at <a href="mailto:{email1}">{email2}</a>'
57
+ ),
58
+ email1=get_email_contacts("tmg") or "#",
59
+ email2=get_email_contacts("tmg") or "unknown",
46
60
  )
47
61
  priority = HIGH_PRIORITY
48
62
 
49
63
  def get_next_actions(self):
50
- next_actions = []
64
+ next_actions = ()
51
65
 
52
66
  # add AE followup to next_actions if followup.
53
67
  next_actions = self.append_to_next_if_required(
@@ -66,7 +80,7 @@ class AeFollowupAction(ActionWithNotification):
66
80
  )
67
81
 
68
82
  # add Study termination to next_actions if LTFU
69
- if self.reference_obj.outcome == LOST_TO_FOLLOWUP:
83
+ if self.reference_obj.outcome == LTFU:
70
84
  for offschedule_model in get_offschedule_models(
71
85
  subject_identifier=self.subject_identifier,
72
86
  report_datetime=self.reference_obj.report_datetime,
@@ -84,14 +98,14 @@ class AeInitialAction(ActionWithNotification):
84
98
  name = AE_INITIAL_ACTION
85
99
  display_name = "Submit AE Initial Report"
86
100
  notification_display_name = "AE Initial Report"
87
- parent_action_names = [
88
- BLOOD_RESULTS_LIPID_ACTION,
101
+ parent_action_names = (
102
+ BLOOD_RESULTS_LIPIDS_ACTION,
89
103
  BLOOD_RESULTS_GLU_ACTION,
90
104
  BLOOD_RESULTS_LFT_ACTION,
91
105
  BLOOD_RESULTS_RFT_ACTION,
92
106
  BLOOD_RESULTS_FBC_ACTION,
93
107
  FOLLOWUP_EXAMINATION_ACTION,
94
- ]
108
+ )
95
109
  reference_model = "meta_ae.aeinitial"
96
110
  show_link_to_changelist = True
97
111
  show_link_to_add = True
@@ -104,7 +118,7 @@ class AeInitialAction(ActionWithNotification):
104
118
 
105
119
  1. Add death report action if death
106
120
  """
107
- next_actions = []
121
+ next_actions = ()
108
122
  deceased = (
109
123
  self.reference_obj.ae_grade == GRADE5 or self.reference_obj.sae_reason.name == DEAD
110
124
  )
@@ -142,20 +156,18 @@ class AeInitialAction(ActionWithNotification):
142
156
  required=self.reference_obj.ae_grade == GRADE4,
143
157
  )
144
158
  # add next AeTmgAction if G3 and is an SAE
145
- next_actions = self.append_to_next_if_required(
159
+ return self.append_to_next_if_required(
146
160
  next_actions=next_actions,
147
161
  action_name=AE_TMG_ACTION,
148
162
  required=(self.reference_obj.ae_grade == GRADE3 and self.reference_obj.sae == YES),
149
163
  )
150
164
 
151
- return next_actions
152
-
153
165
 
154
166
  class AeSusarAction(ActionWithNotification):
155
167
  name = AE_SUSAR_ACTION
156
168
  display_name = "Submit AE SUSAR Report"
157
169
  notification_display_name = "AE SUSAR Report"
158
- parent_action_names = [AE_INITIAL_ACTION]
170
+ parent_action_names = (AE_INITIAL_ACTION,)
159
171
  reference_model = "meta_ae.aesusar"
160
172
  related_reference_model = "meta_ae.aeinitial"
161
173
  related_reference_fk_attr = "ae_initial"
@@ -170,7 +182,7 @@ class AeTmgAction(ActionWithNotification):
170
182
  name = AE_TMG_ACTION
171
183
  display_name = "TMG AE Report pending"
172
184
  notification_display_name = "TMG AE Report"
173
- parent_action_names = [AE_INITIAL_ACTION, AE_FOLLOWUP_ACTION, AE_TMG_ACTION]
185
+ parent_action_names = (AE_INITIAL_ACTION, AE_FOLLOWUP_ACTION, AE_TMG_ACTION)
174
186
  reference_model = "meta_ae.aetmg"
175
187
  related_reference_model = "meta_ae.aeinitial"
176
188
  related_reference_fk_attr = "ae_initial"
@@ -190,13 +202,13 @@ class DeathReportAction(PregnancyActionItemMixin, ActionWithNotification):
190
202
  display_name = "Submit Death Report"
191
203
  notification_display_name = "Death Report"
192
204
  reference_model = "meta_ae.deathreport"
193
- parent_action_names = [AE_INITIAL_ACTION, AE_FOLLOWUP_ACTION]
205
+ parent_action_names = (AE_INITIAL_ACTION, AE_FOLLOWUP_ACTION)
194
206
  show_link_to_changelist = True
195
207
  show_link_to_add = True
196
208
  admin_site_name = "meta_ae_admin"
197
209
  priority = HIGH_PRIORITY
198
210
  singleton = True
199
- dirty_fields = ["cause_of_death"]
211
+ dirty_fields = ("cause_of_death",)
200
212
 
201
213
  def get_next_actions(self):
202
214
  """Adds 1 DEATHReportTMG if not yet created and
@@ -228,7 +240,7 @@ class DeathReportTmgAction(ActionWithNotification):
228
240
  name = DEATH_REPORT_TMG_ACTION
229
241
  display_name = "TMG Death Report pending"
230
242
  notification_display_name = "TMG Death Report"
231
- parent_action_names = [DEATH_REPORT_ACTION, DEATH_REPORT_TMG_ACTION]
243
+ parent_action_names = (DEATH_REPORT_ACTION, DEATH_REPORT_TMG_ACTION)
232
244
  reference_model = "meta_ae.deathreporttmg"
233
245
  related_reference_model = "meta_ae.deathreport"
234
246
  related_reference_fk_attr = "death_report"
@@ -287,12 +299,11 @@ class DeathReportTmgAction(ActionWithNotification):
287
299
  )
288
300
  .count()
289
301
  < 2
302
+ ) and (
303
+ self.reference_obj.cause_of_death
304
+ != self.related_action_item.reference_obj.cause_of_death
290
305
  ):
291
- if (
292
- self.reference_obj.cause_of_death
293
- != self.related_action_item.reference_obj.cause_of_death
294
- ):
295
- next_actions = ["self"]
306
+ next_actions = ["self"]
296
307
  return next_actions
297
308
 
298
309
 
meta_ae/admin/__init__.py CHANGED
@@ -1,5 +1,3 @@
1
- # from .ae_local_review_admin import AeLocalReviewAdmin
2
- # from .ae_sponsor_review_admin import AeSponsorReviewAdmin
3
1
  from .ae_followup_admin import AeFollowupAdmin
4
2
  from .ae_initial_admin import AeInitialAdmin
5
3
  from .ae_susar_admin import AeSusarAdmin
@@ -7,3 +5,15 @@ from .ae_tmg_admin import AeTmgAdmin
7
5
  from .death_report_admin import DeathReportAdmin
8
6
  from .death_report_tmg_admin import DeathReportTmgAdmin
9
7
  from .death_report_tmg_second_admin import DeathReportTmgSecondAdmin
8
+ from .hospitalization_admin import HospitalizationAdmin
9
+
10
+ __all__ = [
11
+ "AeFollowupAdmin",
12
+ "AeInitialAdmin",
13
+ "AeSusarAdmin",
14
+ "AeTmgAdmin",
15
+ "DeathReportAdmin",
16
+ "DeathReportTmgAdmin",
17
+ "DeathReportTmgSecondAdmin",
18
+ "HospitalizationAdmin",
19
+ ]
@@ -1,6 +1,7 @@
1
1
  from django.contrib import admin
2
2
  from edc_adverse_event.modeladmin_mixins import AeFollowupModelAdminMixin
3
3
  from edc_model_admin.history import SimpleHistoryAdmin
4
+ from edc_sites.admin import SiteModelAdminMixin
4
5
 
5
6
  from ..admin_site import meta_ae_admin
6
7
  from ..forms import AeFollowupForm
@@ -8,6 +9,5 @@ from ..models import AeFollowup
8
9
 
9
10
 
10
11
  @admin.register(AeFollowup, site=meta_ae_admin)
11
- class AeFollowupAdmin(AeFollowupModelAdminMixin, SimpleHistoryAdmin):
12
-
12
+ class AeFollowupAdmin(SiteModelAdminMixin, AeFollowupModelAdminMixin, SimpleHistoryAdmin):
13
13
  form = AeFollowupForm
@@ -1,8 +1,10 @@
1
1
  from django.contrib import admin
2
2
  from django.utils.html import format_html
3
+ from django.utils.translation import gettext as _
3
4
  from edc_adverse_event.modeladmin_mixins import AeInitialModelAdminMixin
4
5
  from edc_model_admin.history import SimpleHistoryAdmin
5
6
  from edc_notification.utils import get_email_contacts
7
+ from edc_sites.admin import SiteModelAdminMixin
6
8
 
7
9
  from ..admin_site import meta_ae_admin
8
10
  from ..forms import AeInitialForm
@@ -10,13 +12,14 @@ from ..models import AeInitial
10
12
 
11
13
 
12
14
  @admin.register(AeInitial, site=meta_ae_admin)
13
- class AeInitialAdmin(AeInitialModelAdminMixin, SimpleHistoryAdmin):
14
-
15
+ class AeInitialAdmin(SiteModelAdminMixin, AeInitialModelAdminMixin, SimpleHistoryAdmin):
15
16
  form = AeInitialForm
16
17
  email_contact = get_email_contacts("ae_reports")
17
18
  additional_instructions = format_html(
18
- "Complete the initial AE report and forward to the TMG. "
19
- 'Email to <a href="mailto:{}">{}</a>',
19
+ _(
20
+ "Complete the initial AE report and forward to the TMG. "
21
+ 'Email to <a href="mailto:{}">{}</a>'
22
+ ),
20
23
  email_contact,
21
24
  email_contact,
22
25
  )
@@ -1,5 +1,6 @@
1
1
  from django.contrib import admin
2
2
  from edc_model_admin.history import SimpleHistoryAdmin
3
+ from edc_sites.admin import SiteModelAdminMixin
3
4
 
4
5
  from ..admin_site import meta_ae_admin
5
6
  from ..forms import AeLocalReviewForm
@@ -8,6 +9,5 @@ from .modeladmin_mixins import AeReviewModelAdminMixin
8
9
 
9
10
 
10
11
  @admin.register(AeLocalReview, site=meta_ae_admin)
11
- class AeLocalReviewAdmin(AeReviewModelAdminMixin, SimpleHistoryAdmin):
12
-
12
+ class AeLocalReviewAdmin(SiteModelAdminMixin, AeReviewModelAdminMixin, SimpleHistoryAdmin):
13
13
  form = AeLocalReviewForm
@@ -1,5 +1,6 @@
1
1
  from django.contrib import admin
2
2
  from edc_model_admin.history import SimpleHistoryAdmin
3
+ from edc_sites.admin import SiteModelAdminMixin
3
4
 
4
5
  from ..admin_site import meta_ae_admin
5
6
  from ..forms import AeSponsorReviewForm
@@ -8,6 +9,5 @@ from .modeladmin_mixins import AeReviewModelAdminMixin
8
9
 
9
10
 
10
11
  @admin.register(AeSponsorReview, site=meta_ae_admin)
11
- class AeSponsorReviewAdmin(AeReviewModelAdminMixin, SimpleHistoryAdmin):
12
-
12
+ class AeSponsorReviewAdmin(SiteModelAdminMixin, AeReviewModelAdminMixin, SimpleHistoryAdmin):
13
13
  form = AeSponsorReviewForm
@@ -1,6 +1,7 @@
1
1
  from django.contrib import admin
2
- from edc_adverse_event.modeladmin_mixins import AeSusarModelAdminMixin
2
+ from edc_adverse_event.modeladmin_mixins.ae_susar_admin_mixin import AeSusarModelAdminMixin
3
3
  from edc_model_admin.history import SimpleHistoryAdmin
4
+ from edc_sites.admin import SiteModelAdminMixin
4
5
 
5
6
  from ..admin_site import meta_ae_admin
6
7
  from ..forms import AeSusarForm
@@ -8,6 +9,5 @@ from ..models import AeSusar
8
9
 
9
10
 
10
11
  @admin.register(AeSusar, site=meta_ae_admin)
11
- class AeSusarAdmin(AeSusarModelAdminMixin, SimpleHistoryAdmin):
12
-
12
+ class AeSusarAdmin(SiteModelAdminMixin, AeSusarModelAdminMixin, SimpleHistoryAdmin):
13
13
  form = AeSusarForm
@@ -1,6 +1,7 @@
1
1
  from django.contrib import admin
2
2
  from edc_adverse_event.modeladmin_mixins import AeTmgModelAdminMixin
3
3
  from edc_model_admin.history import SimpleHistoryAdmin
4
+ from edc_sites.admin import SiteModelAdminMixin
4
5
 
5
6
  from ..admin_site import meta_ae_admin
6
7
  from ..forms import AeTmgForm
@@ -8,6 +9,5 @@ from ..models import AeTmg
8
9
 
9
10
 
10
11
  @admin.register(AeTmg, site=meta_ae_admin)
11
- class AeTmgAdmin(AeTmgModelAdminMixin, SimpleHistoryAdmin):
12
-
12
+ class AeTmgAdmin(SiteModelAdminMixin, AeTmgModelAdminMixin, SimpleHistoryAdmin):
13
13
  form = AeTmgForm
@@ -3,6 +3,7 @@ from django_audit_fields.admin import audit_fieldset_tuple
3
3
  from edc_action_item.fieldsets import action_fieldset_tuple
4
4
  from edc_adverse_event.modeladmin_mixins import DeathReportModelAdminMixin
5
5
  from edc_model_admin.history import SimpleHistoryAdmin
6
+ from edc_sites.admin import SiteModelAdminMixin
6
7
 
7
8
  from ..admin_site import meta_ae_admin
8
9
  from ..forms import DeathReportForm
@@ -10,8 +11,7 @@ from ..models import DeathReport
10
11
 
11
12
 
12
13
  @admin.register(DeathReport, site=meta_ae_admin)
13
- class DeathReportAdmin(DeathReportModelAdminMixin, SimpleHistoryAdmin):
14
-
14
+ class DeathReportAdmin(SiteModelAdminMixin, DeathReportModelAdminMixin, SimpleHistoryAdmin):
15
15
  form = DeathReportForm
16
16
 
17
17
  fieldsets = (
@@ -65,7 +65,7 @@ class DeathReportAdmin(DeathReportModelAdminMixin, SimpleHistoryAdmin):
65
65
  audit_fieldset_tuple,
66
66
  )
67
67
 
68
- radio_fields = {
68
+ radio_fields = { # noqa: RUF012
69
69
  "cause_of_death": admin.VERTICAL,
70
70
  "death_as_inpatient": admin.VERTICAL,
71
71
  "death_location": admin.VERTICAL,
@@ -1,6 +1,7 @@
1
1
  from django.contrib import admin
2
2
  from edc_adverse_event.modeladmin_mixins import DeathReportTmgModelAdminMixin
3
3
  from edc_model_admin.history import SimpleHistoryAdmin
4
+ from edc_sites.admin import SiteModelAdminMixin
4
5
 
5
6
  from ..admin_site import meta_ae_admin
6
7
  from ..forms import DeathReportTmgForm
@@ -8,6 +9,7 @@ from ..models import DeathReportTmg
8
9
 
9
10
 
10
11
  @admin.register(DeathReportTmg, site=meta_ae_admin)
11
- class DeathReportTmgAdmin(DeathReportTmgModelAdminMixin, SimpleHistoryAdmin):
12
-
12
+ class DeathReportTmgAdmin(
13
+ SiteModelAdminMixin, DeathReportTmgModelAdminMixin, SimpleHistoryAdmin
14
+ ):
13
15
  form = DeathReportTmgForm
@@ -1,6 +1,7 @@
1
1
  from django.contrib import admin
2
2
  from edc_adverse_event.modeladmin_mixins import DeathReportTmgModelAdminMixin
3
3
  from edc_model_admin.history import SimpleHistoryAdmin
4
+ from edc_sites.admin import SiteModelAdminMixin
4
5
 
5
6
  from ..admin_site import meta_ae_admin
6
7
  from ..forms import DeathReportTmgSecondForm
@@ -8,6 +9,7 @@ from ..models import DeathReportTmgSecond
8
9
 
9
10
 
10
11
  @admin.register(DeathReportTmgSecond, site=meta_ae_admin)
11
- class DeathReportTmgSecondAdmin(DeathReportTmgModelAdminMixin, SimpleHistoryAdmin):
12
-
12
+ class DeathReportTmgSecondAdmin(
13
+ SiteModelAdminMixin, DeathReportTmgModelAdminMixin, SimpleHistoryAdmin
14
+ ):
13
15
  form = DeathReportTmgSecondForm
@@ -0,0 +1,15 @@
1
+ from django.contrib import admin
2
+ from edc_adverse_event.modeladmin_mixins import HospitalizationModelAdminMixin
3
+ from edc_model_admin.history import SimpleHistoryAdmin
4
+ from edc_sites.admin import SiteModelAdminMixin
5
+
6
+ from ..admin_site import meta_ae_admin
7
+ from ..forms import HospitalizationForm
8
+ from ..models import Hospitalization
9
+
10
+
11
+ @admin.register(Hospitalization, site=meta_ae_admin)
12
+ class HospitalizationAdmin(
13
+ SiteModelAdminMixin, HospitalizationModelAdminMixin, SimpleHistoryAdmin
14
+ ):
15
+ form = HospitalizationForm
@@ -1,13 +1,13 @@
1
- from typing import Tuple
2
-
1
+ from clinicedc_constants import NO, NOT_APPLICABLE, YES
3
2
  from django.contrib import admin
4
3
  from django.core.exceptions import ObjectDoesNotExist
5
4
  from django.template.loader import render_to_string
6
5
  from django.urls.base import reverse
7
6
  from django.utils.html import format_html
8
7
  from django.utils.safestring import mark_safe
8
+ from django.utils.translation import gettext as _
9
9
  from django_audit_fields.admin import audit_fieldset_tuple
10
- from edc_action_item import action_fieldset_tuple
10
+ from edc_action_item.fieldsets import action_fieldset_tuple
11
11
  from edc_action_item.modeladmin_mixins import ActionItemModelAdminMixin
12
12
  from edc_adverse_event.forms import AeFollowupForm
13
13
  from edc_adverse_event.modeladmin_mixins import (
@@ -18,7 +18,6 @@ from edc_adverse_event.templatetags.edc_adverse_event_extras import (
18
18
  format_ae_followup_description,
19
19
  select_description_template,
20
20
  )
21
- from edc_constants.constants import NO, NOT_APPLICABLE, YES
22
21
  from edc_model_admin.dashboard import ModelAdminSubjectDashboardMixin
23
22
 
24
23
 
@@ -28,7 +27,6 @@ class AeReviewModelAdminMixin(
28
27
  AdverseEventModelAdminMixin,
29
28
  ActionItemModelAdminMixin,
30
29
  ):
31
-
32
30
  form = AeFollowupForm
33
31
 
34
32
  fieldsets = (
@@ -51,13 +49,13 @@ class AeReviewModelAdminMixin(
51
49
  audit_fieldset_tuple,
52
50
  )
53
51
 
54
- radio_fields = {
52
+ radio_fields = { # noqa: RUF012
55
53
  "outcome": admin.VERTICAL,
56
54
  "followup": admin.VERTICAL,
57
55
  "ae_grade": admin.VERTICAL,
58
56
  }
59
57
 
60
- list_display: Tuple[str, ...] = (
58
+ list_display: tuple[str, ...] = (
61
59
  "identifier",
62
60
  "dashboard",
63
61
  "description",
@@ -66,11 +64,10 @@ class AeReviewModelAdminMixin(
66
64
  "user",
67
65
  )
68
66
 
69
- list_filter: Tuple[str, ...] = ("ae_grade", "followup", "outcome_date", "report_datetime")
67
+ list_filter: tuple[str, ...] = ("ae_grade", "followup", "outcome_date", "report_datetime")
70
68
 
71
- search_fields: Tuple[str, ...] = (
69
+ search_fields: tuple[str, ...] = (
72
70
  "action_identifier",
73
- "ae_initial__tracking_identifier",
74
71
  "ae_initial__subject_identifier",
75
72
  "ae_initial__action_identifier",
76
73
  )
@@ -97,8 +94,8 @@ class AeReviewModelAdminMixin(
97
94
  if follow_up_reports:
98
95
  return format_html(
99
96
  "{}. See {}",
100
- mark_safe(obj.get_outcome_display()), # nosec B703, B308
101
- mark_safe(follow_up_reports), # nosec B703, B308
97
+ mark_safe(_(obj.get_outcome_display())), # noqa: S308
98
+ mark_safe(_(follow_up_reports)), # noqa: S308
102
99
  )
103
100
  return obj.get_outcome_display()
104
101
 
@@ -112,12 +109,13 @@ class AeReviewModelAdminMixin(
112
109
  namespace = self.admin_site.name
113
110
  url = reverse(f"{namespace}:{url_name}_changelist")
114
111
  return format_html(
115
- '<a data-toggle="tooltip" title="go to ae initial report" '
112
+ '<a data-toggle="tooltip" title="{title}" '
116
113
  'href="{url}?q={action_identifier}">{identifier}</a>',
117
- url=mark_safe(url), # nosec B703, B308
118
- action_identifier=mark_safe( # nosec B703, B308
114
+ title=_("go to ae initial report"),
115
+ url=mark_safe(url), # noqa: S308
116
+ action_identifier=mark_safe( # noqa: S308
119
117
  obj.ae_initial.action_identifier
120
118
  ),
121
- identifier=mark_safe(obj.ae_initial.identifier), # nosec B703, B308
119
+ identifier=mark_safe(obj.ae_initial.identifier), # noqa: S308
122
120
  )
123
121
  return None
meta_ae/baker_recipes.py CHANGED
@@ -1,6 +1,5 @@
1
- from edc_constants.constants import NO, NOT_APPLICABLE, YES
2
- from edc_reportable.constants import GRADE4
3
- from edc_utils.date import get_utcnow
1
+ from clinicedc_constants import GRADE4, NO, NOT_APPLICABLE, NOT_RELATED, YES
2
+ from django.utils import timezone
4
3
  from model_bakery.recipe import Recipe
5
4
 
6
5
  from meta_ae.models.ae_followup import AeFollowup
@@ -15,9 +14,9 @@ aeinitial = Recipe(
15
14
  ae_description="A description of this event",
16
15
  ae_grade=GRADE4,
17
16
  ae_study_relation_possibility=YES,
18
- ae_start_date=get_utcnow().date(),
19
- ae_awareness_date=get_utcnow().date(),
20
- study_drug_relation="not_related",
17
+ ae_start_date=timezone.now().date(),
18
+ ae_awareness_date=timezone.now().date(),
19
+ study_drug_relation=NOT_RELATED,
21
20
  ae_treatment="Some special treatment",
22
21
  sae=NO,
23
22
  susar=NO,
meta_ae/choices.py CHANGED
@@ -1,4 +1,4 @@
1
- from edc_constants.constants import OTHER, UNKNOWN
1
+ from clinicedc_constants import OTHER, UNKNOWN
2
2
 
3
3
  from .constants import HOSPITAL_CLINIC
4
4
 
meta_ae/forms/__init__.py CHANGED
@@ -7,3 +7,17 @@ from .ae_tmg_form import AeTmgForm
7
7
  from .death_report_form import DeathReportForm
8
8
  from .death_report_tmg_form import DeathReportTmgForm
9
9
  from .death_report_tmg_second_form import DeathReportTmgSecondForm
10
+ from .hospitalization_form import HospitalizationForm
11
+
12
+ __all__ = [
13
+ "AeFollowupForm",
14
+ "AeInitialForm",
15
+ "AeLocalReviewForm",
16
+ "AeSponsorReviewForm",
17
+ "AeSusarForm",
18
+ "AeTmgForm",
19
+ "DeathReportForm",
20
+ "DeathReportTmgForm",
21
+ "DeathReportTmgSecondForm",
22
+ "HospitalizationForm",
23
+ ]
@@ -1,7 +1,7 @@
1
+ from clinicedc_constants import OTHER
1
2
  from django import forms
2
3
  from edc_adverse_event.form_validator_mixins import DeathReportFormValidatorMixin
3
4
  from edc_adverse_event.modelform_mixins import DeathReportModelFormMixin
4
- from edc_constants.constants import OTHER
5
5
  from edc_form_validators import FormValidator
6
6
 
7
7
  from ..constants import HOSPITAL_CLINIC
@@ -37,7 +37,6 @@ class DeathReportFormValidator(DeathReportFormValidatorMixin, FormValidator):
37
37
 
38
38
 
39
39
  class DeathReportForm(DeathReportModelFormMixin, forms.ModelForm):
40
-
41
40
  form_validator_cls = DeathReportFormValidator
42
41
 
43
42
  class Meta(DeathReportModelFormMixin.Meta):
@@ -0,0 +1,11 @@
1
+ from django import forms
2
+ from django.forms import ALL_FIELDS
3
+ from edc_adverse_event.modelform_mixins import HospitalizationModelFormMixin
4
+
5
+ from ..models import Hospitalization
6
+
7
+
8
+ class HospitalizationForm(HospitalizationModelFormMixin, forms.ModelForm):
9
+ class Meta(HospitalizationModelFormMixin.Meta):
10
+ model = Hospitalization
11
+ fields = ALL_FIELDS
@@ -21,8 +21,8 @@ class AeReviewModelFormMixin(
21
21
  return cleaned_data
22
22
 
23
23
  class Meta:
24
- help_text = {"subject_identifier": "(read-only)", "action_identifier": "(read-only)"}
25
- widgets = {
24
+ help_text = {"subject_identifier": "(read-only)", "action_identifier": "(read-only)"} # noqa: RUF012
25
+ widgets = { # noqa: RUF012
26
26
  "subject_identifier": forms.TextInput(attrs={"readonly": "readonly"}),
27
27
  "action_identifier": forms.TextInput(attrs={"readonly": "readonly"}),
28
28
  }
meta_ae/list_data.py CHANGED
@@ -1,4 +1,4 @@
1
- from edc_constants.constants import DEAD, NOT_APPLICABLE, OTHER, UNKNOWN
1
+ from clinicedc_constants import DEAD, NOT_APPLICABLE, OTHER, UNKNOWN
2
2
 
3
3
  list_data = {
4
4
  "edc_adverse_event.aeclassification": [
@@ -9,6 +9,7 @@ list_data = {
9
9
  # ("diarrhoea", "Diarrhoea"),
10
10
  # ("renal_impairment", "Renal impairment"),
11
11
  (OTHER, "Other"),
12
+ (NOT_APPLICABLE, "Not applicable"),
12
13
  ],
13
14
  "edc_adverse_event.saereason": [
14
15
  (NOT_APPLICABLE, "Not applicable"),