lamindb 0.76.7__py3-none-any.whl → 0.76.8__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (61) hide show
  1. lamindb/__init__.py +113 -113
  2. lamindb/_artifact.py +1205 -1178
  3. lamindb/_can_validate.py +579 -579
  4. lamindb/_collection.py +387 -387
  5. lamindb/_curate.py +1601 -1601
  6. lamindb/_feature.py +155 -155
  7. lamindb/_feature_set.py +242 -242
  8. lamindb/_filter.py +23 -23
  9. lamindb/_finish.py +256 -256
  10. lamindb/_from_values.py +382 -382
  11. lamindb/_is_versioned.py +40 -40
  12. lamindb/_parents.py +476 -476
  13. lamindb/_query_manager.py +125 -125
  14. lamindb/_query_set.py +362 -362
  15. lamindb/_record.py +649 -649
  16. lamindb/_run.py +57 -57
  17. lamindb/_save.py +308 -295
  18. lamindb/_storage.py +14 -14
  19. lamindb/_transform.py +127 -127
  20. lamindb/_ulabel.py +56 -56
  21. lamindb/_utils.py +9 -9
  22. lamindb/_view.py +72 -72
  23. lamindb/core/__init__.py +94 -94
  24. lamindb/core/_context.py +574 -574
  25. lamindb/core/_data.py +438 -438
  26. lamindb/core/_feature_manager.py +867 -867
  27. lamindb/core/_label_manager.py +253 -253
  28. lamindb/core/_mapped_collection.py +597 -597
  29. lamindb/core/_settings.py +187 -187
  30. lamindb/core/_sync_git.py +138 -138
  31. lamindb/core/_track_environment.py +27 -27
  32. lamindb/core/datasets/__init__.py +59 -59
  33. lamindb/core/datasets/_core.py +571 -571
  34. lamindb/core/datasets/_fake.py +36 -36
  35. lamindb/core/exceptions.py +90 -77
  36. lamindb/core/fields.py +12 -12
  37. lamindb/core/loaders.py +164 -164
  38. lamindb/core/schema.py +56 -56
  39. lamindb/core/storage/__init__.py +25 -25
  40. lamindb/core/storage/_anndata_accessor.py +740 -740
  41. lamindb/core/storage/_anndata_sizes.py +41 -41
  42. lamindb/core/storage/_backed_access.py +98 -98
  43. lamindb/core/storage/_tiledbsoma.py +204 -204
  44. lamindb/core/storage/_valid_suffixes.py +21 -21
  45. lamindb/core/storage/_zarr.py +110 -110
  46. lamindb/core/storage/objects.py +62 -62
  47. lamindb/core/storage/paths.py +172 -141
  48. lamindb/core/subsettings/__init__.py +12 -12
  49. lamindb/core/subsettings/_creation_settings.py +38 -38
  50. lamindb/core/subsettings/_transform_settings.py +21 -21
  51. lamindb/core/types.py +19 -19
  52. lamindb/core/versioning.py +158 -158
  53. lamindb/integrations/__init__.py +12 -12
  54. lamindb/integrations/_vitessce.py +107 -107
  55. lamindb/setup/__init__.py +14 -14
  56. lamindb/setup/core/__init__.py +4 -4
  57. {lamindb-0.76.7.dist-info → lamindb-0.76.8.dist-info}/LICENSE +201 -201
  58. {lamindb-0.76.7.dist-info → lamindb-0.76.8.dist-info}/METADATA +3 -3
  59. lamindb-0.76.8.dist-info/RECORD +60 -0
  60. {lamindb-0.76.7.dist-info → lamindb-0.76.8.dist-info}/WHEEL +1 -1
  61. lamindb-0.76.7.dist-info/RECORD +0 -60
lamindb/core/__init__.py CHANGED
@@ -1,94 +1,94 @@
1
- """Core library.
2
-
3
- Registries:
4
-
5
- .. autosummary::
6
- :toctree: .
7
-
8
- Record
9
- Registry
10
- QuerySet
11
- QueryManager
12
- RecordsList
13
- FeatureManager
14
- ParamManager
15
- LabelManager
16
- IsVersioned
17
- CanValidate
18
- HasParents
19
- TracksRun
20
- TracksUpdates
21
- ParamValue
22
- FeatureValue
23
- InspectResult
24
- fields
25
-
26
- Curators:
27
-
28
- .. autosummary::
29
- :toctree: .
30
-
31
- BaseCurator
32
- DataFrameCurator
33
- AnnDataCurator
34
- MuDataCurator
35
- CurateLookup
36
-
37
- Settings & context:
38
-
39
- .. autosummary::
40
- :toctree: .
41
-
42
- Settings
43
- Context
44
-
45
- Data loaders:
46
-
47
- .. autosummary::
48
- :toctree: .
49
-
50
- MappedCollection
51
-
52
- Modules:
53
-
54
- .. autosummary::
55
- :toctree: .
56
-
57
- loaders
58
- datasets
59
- storage
60
- types
61
- exceptions
62
- subsettings
63
-
64
- """
65
-
66
- from lamin_utils._inspect import InspectResult
67
- from lnschema_core.models import (
68
- CanValidate,
69
- FeatureValue,
70
- HasParents,
71
- IsVersioned,
72
- ParamValue,
73
- Record,
74
- Registry,
75
- TracksRun,
76
- TracksUpdates,
77
- )
78
-
79
- from lamindb._curate import (
80
- AnnDataCurator,
81
- BaseCurator,
82
- CurateLookup,
83
- DataFrameCurator,
84
- MuDataCurator,
85
- )
86
- from lamindb._query_manager import QueryManager
87
- from lamindb._query_set import QuerySet, RecordsList
88
- from lamindb.core._feature_manager import FeatureManager, ParamManager
89
- from lamindb.core._label_manager import LabelManager
90
-
91
- from . import _data, datasets, exceptions, fields, loaders, subsettings, types
92
- from ._context import Context
93
- from ._mapped_collection import MappedCollection
94
- from ._settings import Settings
1
+ """Core library.
2
+
3
+ Registries:
4
+
5
+ .. autosummary::
6
+ :toctree: .
7
+
8
+ Record
9
+ Registry
10
+ QuerySet
11
+ QueryManager
12
+ RecordsList
13
+ FeatureManager
14
+ ParamManager
15
+ LabelManager
16
+ IsVersioned
17
+ CanValidate
18
+ HasParents
19
+ TracksRun
20
+ TracksUpdates
21
+ ParamValue
22
+ FeatureValue
23
+ InspectResult
24
+ fields
25
+
26
+ Curators:
27
+
28
+ .. autosummary::
29
+ :toctree: .
30
+
31
+ BaseCurator
32
+ DataFrameCurator
33
+ AnnDataCurator
34
+ MuDataCurator
35
+ CurateLookup
36
+
37
+ Settings & context:
38
+
39
+ .. autosummary::
40
+ :toctree: .
41
+
42
+ Settings
43
+ Context
44
+
45
+ Data loaders:
46
+
47
+ .. autosummary::
48
+ :toctree: .
49
+
50
+ MappedCollection
51
+
52
+ Modules:
53
+
54
+ .. autosummary::
55
+ :toctree: .
56
+
57
+ loaders
58
+ datasets
59
+ storage
60
+ types
61
+ exceptions
62
+ subsettings
63
+
64
+ """
65
+
66
+ from lamin_utils._inspect import InspectResult
67
+ from lnschema_core.models import (
68
+ CanValidate,
69
+ FeatureValue,
70
+ HasParents,
71
+ IsVersioned,
72
+ ParamValue,
73
+ Record,
74
+ Registry,
75
+ TracksRun,
76
+ TracksUpdates,
77
+ )
78
+
79
+ from lamindb._curate import (
80
+ AnnDataCurator,
81
+ BaseCurator,
82
+ CurateLookup,
83
+ DataFrameCurator,
84
+ MuDataCurator,
85
+ )
86
+ from lamindb._query_manager import QueryManager
87
+ from lamindb._query_set import QuerySet, RecordsList
88
+ from lamindb.core._feature_manager import FeatureManager, ParamManager
89
+ from lamindb.core._label_manager import LabelManager
90
+
91
+ from . import _data, datasets, exceptions, fields, loaders, subsettings, types
92
+ from ._context import Context
93
+ from ._mapped_collection import MappedCollection
94
+ from ._settings import Settings