lamindb 0.76.7__py3-none-any.whl → 0.76.8__py3-none-any.whl

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Files changed (61) hide show
  1. lamindb/__init__.py +113 -113
  2. lamindb/_artifact.py +1205 -1178
  3. lamindb/_can_validate.py +579 -579
  4. lamindb/_collection.py +387 -387
  5. lamindb/_curate.py +1601 -1601
  6. lamindb/_feature.py +155 -155
  7. lamindb/_feature_set.py +242 -242
  8. lamindb/_filter.py +23 -23
  9. lamindb/_finish.py +256 -256
  10. lamindb/_from_values.py +382 -382
  11. lamindb/_is_versioned.py +40 -40
  12. lamindb/_parents.py +476 -476
  13. lamindb/_query_manager.py +125 -125
  14. lamindb/_query_set.py +362 -362
  15. lamindb/_record.py +649 -649
  16. lamindb/_run.py +57 -57
  17. lamindb/_save.py +308 -295
  18. lamindb/_storage.py +14 -14
  19. lamindb/_transform.py +127 -127
  20. lamindb/_ulabel.py +56 -56
  21. lamindb/_utils.py +9 -9
  22. lamindb/_view.py +72 -72
  23. lamindb/core/__init__.py +94 -94
  24. lamindb/core/_context.py +574 -574
  25. lamindb/core/_data.py +438 -438
  26. lamindb/core/_feature_manager.py +867 -867
  27. lamindb/core/_label_manager.py +253 -253
  28. lamindb/core/_mapped_collection.py +597 -597
  29. lamindb/core/_settings.py +187 -187
  30. lamindb/core/_sync_git.py +138 -138
  31. lamindb/core/_track_environment.py +27 -27
  32. lamindb/core/datasets/__init__.py +59 -59
  33. lamindb/core/datasets/_core.py +571 -571
  34. lamindb/core/datasets/_fake.py +36 -36
  35. lamindb/core/exceptions.py +90 -77
  36. lamindb/core/fields.py +12 -12
  37. lamindb/core/loaders.py +164 -164
  38. lamindb/core/schema.py +56 -56
  39. lamindb/core/storage/__init__.py +25 -25
  40. lamindb/core/storage/_anndata_accessor.py +740 -740
  41. lamindb/core/storage/_anndata_sizes.py +41 -41
  42. lamindb/core/storage/_backed_access.py +98 -98
  43. lamindb/core/storage/_tiledbsoma.py +204 -204
  44. lamindb/core/storage/_valid_suffixes.py +21 -21
  45. lamindb/core/storage/_zarr.py +110 -110
  46. lamindb/core/storage/objects.py +62 -62
  47. lamindb/core/storage/paths.py +172 -141
  48. lamindb/core/subsettings/__init__.py +12 -12
  49. lamindb/core/subsettings/_creation_settings.py +38 -38
  50. lamindb/core/subsettings/_transform_settings.py +21 -21
  51. lamindb/core/types.py +19 -19
  52. lamindb/core/versioning.py +158 -158
  53. lamindb/integrations/__init__.py +12 -12
  54. lamindb/integrations/_vitessce.py +107 -107
  55. lamindb/setup/__init__.py +14 -14
  56. lamindb/setup/core/__init__.py +4 -4
  57. {lamindb-0.76.7.dist-info → lamindb-0.76.8.dist-info}/LICENSE +201 -201
  58. {lamindb-0.76.7.dist-info → lamindb-0.76.8.dist-info}/METADATA +3 -3
  59. lamindb-0.76.8.dist-info/RECORD +60 -0
  60. {lamindb-0.76.7.dist-info → lamindb-0.76.8.dist-info}/WHEEL +1 -1
  61. lamindb-0.76.7.dist-info/RECORD +0 -60
lamindb/_is_versioned.py CHANGED
@@ -1,40 +1,40 @@
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- from __future__ import annotations
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-
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- import lamindb_setup as ln_setup
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- from lamin_utils import logger
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- from lamindb_setup.core.upath import UPath
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- from lnschema_core.models import IsVersioned
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-
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- from lamindb._utils import attach_func_to_class_method
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-
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- from .core.versioning import create_uid, get_new_path_from_uid
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-
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-
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- # docstring handled through attach_func_to_class_method
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- def _add_to_version_family(self, revises: IsVersioned, version: str | None = None):
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- old_uid = self.uid
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- new_uid, revises = create_uid(revises=revises, version=version)
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- if self.__class__.__name__ == "Artifact" and self._key_is_virtual:
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- old_path = self.path
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- new_path = get_new_path_from_uid(
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- old_path=old_path, old_uid=old_uid, new_uid=new_uid
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- )
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- new_path = UPath(old_path).rename(new_path)
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- logger.success(f"updated path from {old_path} to {new_path}!")
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- self.uid = new_uid
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- self.version = version
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- self.save()
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- logger.success(f"updated uid from {old_uid} to {new_uid}!")
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-
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-
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- METHOD_NAMES = [
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- "_add_to_version_family",
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- ]
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-
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- if ln_setup._TESTING: # type: ignore
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- from inspect import signature
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-
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- SIGS = {name: signature(getattr(IsVersioned, name)) for name in METHOD_NAMES}
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-
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- for name in METHOD_NAMES:
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- attach_func_to_class_method(name, IsVersioned, globals())
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+ from __future__ import annotations
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+
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+ import lamindb_setup as ln_setup
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+ from lamin_utils import logger
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+ from lamindb_setup.core.upath import UPath
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+ from lnschema_core.models import IsVersioned
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+
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+ from lamindb._utils import attach_func_to_class_method
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+
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+ from .core.versioning import create_uid, get_new_path_from_uid
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+
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+
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+ # docstring handled through attach_func_to_class_method
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+ def _add_to_version_family(self, revises: IsVersioned, version: str | None = None):
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+ old_uid = self.uid
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+ new_uid, revises = create_uid(revises=revises, version=version)
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+ if self.__class__.__name__ == "Artifact" and self._key_is_virtual:
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+ old_path = self.path
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+ new_path = get_new_path_from_uid(
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+ old_path=old_path, old_uid=old_uid, new_uid=new_uid
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+ )
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+ new_path = UPath(old_path).rename(new_path)
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+ logger.success(f"updated path from {old_path} to {new_path}!")
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+ self.uid = new_uid
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+ self.version = version
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+ self.save()
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+ logger.success(f"updated uid from {old_uid} to {new_uid}!")
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+
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+
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+ METHOD_NAMES = [
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+ "_add_to_version_family",
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+ ]
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+
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+ if ln_setup._TESTING: # type: ignore
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+ from inspect import signature
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+
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+ SIGS = {name: signature(getattr(IsVersioned, name)) for name in METHOD_NAMES}
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+
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+ for name in METHOD_NAMES:
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+ attach_func_to_class_method(name, IsVersioned, globals())