lamindb 0.76.7__py3-none-any.whl → 0.76.8__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (61) hide show
  1. lamindb/__init__.py +113 -113
  2. lamindb/_artifact.py +1205 -1178
  3. lamindb/_can_validate.py +579 -579
  4. lamindb/_collection.py +387 -387
  5. lamindb/_curate.py +1601 -1601
  6. lamindb/_feature.py +155 -155
  7. lamindb/_feature_set.py +242 -242
  8. lamindb/_filter.py +23 -23
  9. lamindb/_finish.py +256 -256
  10. lamindb/_from_values.py +382 -382
  11. lamindb/_is_versioned.py +40 -40
  12. lamindb/_parents.py +476 -476
  13. lamindb/_query_manager.py +125 -125
  14. lamindb/_query_set.py +362 -362
  15. lamindb/_record.py +649 -649
  16. lamindb/_run.py +57 -57
  17. lamindb/_save.py +308 -295
  18. lamindb/_storage.py +14 -14
  19. lamindb/_transform.py +127 -127
  20. lamindb/_ulabel.py +56 -56
  21. lamindb/_utils.py +9 -9
  22. lamindb/_view.py +72 -72
  23. lamindb/core/__init__.py +94 -94
  24. lamindb/core/_context.py +574 -574
  25. lamindb/core/_data.py +438 -438
  26. lamindb/core/_feature_manager.py +867 -867
  27. lamindb/core/_label_manager.py +253 -253
  28. lamindb/core/_mapped_collection.py +597 -597
  29. lamindb/core/_settings.py +187 -187
  30. lamindb/core/_sync_git.py +138 -138
  31. lamindb/core/_track_environment.py +27 -27
  32. lamindb/core/datasets/__init__.py +59 -59
  33. lamindb/core/datasets/_core.py +571 -571
  34. lamindb/core/datasets/_fake.py +36 -36
  35. lamindb/core/exceptions.py +90 -77
  36. lamindb/core/fields.py +12 -12
  37. lamindb/core/loaders.py +164 -164
  38. lamindb/core/schema.py +56 -56
  39. lamindb/core/storage/__init__.py +25 -25
  40. lamindb/core/storage/_anndata_accessor.py +740 -740
  41. lamindb/core/storage/_anndata_sizes.py +41 -41
  42. lamindb/core/storage/_backed_access.py +98 -98
  43. lamindb/core/storage/_tiledbsoma.py +204 -204
  44. lamindb/core/storage/_valid_suffixes.py +21 -21
  45. lamindb/core/storage/_zarr.py +110 -110
  46. lamindb/core/storage/objects.py +62 -62
  47. lamindb/core/storage/paths.py +172 -141
  48. lamindb/core/subsettings/__init__.py +12 -12
  49. lamindb/core/subsettings/_creation_settings.py +38 -38
  50. lamindb/core/subsettings/_transform_settings.py +21 -21
  51. lamindb/core/types.py +19 -19
  52. lamindb/core/versioning.py +158 -158
  53. lamindb/integrations/__init__.py +12 -12
  54. lamindb/integrations/_vitessce.py +107 -107
  55. lamindb/setup/__init__.py +14 -14
  56. lamindb/setup/core/__init__.py +4 -4
  57. {lamindb-0.76.7.dist-info → lamindb-0.76.8.dist-info}/LICENSE +201 -201
  58. {lamindb-0.76.7.dist-info → lamindb-0.76.8.dist-info}/METADATA +3 -3
  59. lamindb-0.76.8.dist-info/RECORD +60 -0
  60. {lamindb-0.76.7.dist-info → lamindb-0.76.8.dist-info}/WHEEL +1 -1
  61. lamindb-0.76.7.dist-info/RECORD +0 -60
lamindb/__init__.py CHANGED
@@ -1,113 +1,113 @@
1
- """A data framework for biology.
2
-
3
- Core registries.
4
-
5
- .. autosummary::
6
- :toctree: .
7
-
8
- Artifact
9
- Collection
10
- Transform
11
- Run
12
- User
13
- Storage
14
- ULabel
15
- Feature
16
- FeatureSet
17
- Param
18
-
19
- Key functionality.
20
-
21
- .. autosummary::
22
- :toctree: .
23
-
24
- context
25
- connect
26
- Curator
27
- view
28
- save
29
-
30
- Modules and settings.
31
-
32
- .. autosummary::
33
- :toctree: .
34
-
35
- integrations
36
- settings
37
- setup
38
- UPath
39
- core
40
-
41
- """
42
-
43
- # denote a release candidate for 0.1.0 with 0.1rc1, 0.1a1, 0.1b1, etc.
44
- __version__ = "0.76.7"
45
-
46
- import os as _os
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-
48
- import lamindb_setup as _lamindb_setup
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- from lamindb_setup._check_setup import InstanceNotSetupError as _InstanceNotSetupError
50
- from lamindb_setup._check_setup import _check_instance_setup
51
- from lamindb_setup._connect_instance import connect
52
- from lamindb_setup.core.upath import UPath
53
-
54
- from . import setup
55
-
56
-
57
- def __getattr__(name):
58
- raise _InstanceNotSetupError()
59
-
60
-
61
- if _check_instance_setup(from_lamindb=True):
62
- del _InstanceNotSetupError
63
- del __getattr__ # delete so that imports work out
64
- from lnschema_core.models import (
65
- Artifact,
66
- Collection,
67
- Feature,
68
- FeatureSet,
69
- Param,
70
- Run,
71
- Storage,
72
- Transform,
73
- ULabel,
74
- User,
75
- )
76
-
77
- from . import core # isort: split
78
- from . import (
79
- _artifact,
80
- _can_validate,
81
- _collection,
82
- _curate,
83
- _feature,
84
- _feature_set,
85
- _is_versioned,
86
- _parents,
87
- _record,
88
- _run,
89
- _storage,
90
- _transform,
91
- _ulabel,
92
- integrations,
93
- )
94
- from ._curate import Curator
95
- from ._save import save
96
- from ._view import view
97
- from .core._context import context
98
- from .core._settings import settings
99
-
100
- # schema modules
101
- if not _os.environ.get("LAMINDB_MULTI_INSTANCE") == "true":
102
- from lamindb_setup._init_instance import (
103
- reload_schema_modules as _reload_schema_modules,
104
- )
105
-
106
- _reload_schema_modules(_lamindb_setup.settings.instance)
107
-
108
- track = context.track # backward compat
109
- finish = context.finish # backward compat
110
- Curate = Curator # backward compat
111
- settings.__doc__ = """Global settings (:class:`~lamindb.core.Settings`)."""
112
- context.__doc__ = """Global run context (:class:`~lamindb.core.Context`)."""
113
- from django.db.models import Q
1
+ """A data framework for biology.
2
+
3
+ Core registries.
4
+
5
+ .. autosummary::
6
+ :toctree: .
7
+
8
+ Artifact
9
+ Collection
10
+ Transform
11
+ Run
12
+ User
13
+ Storage
14
+ ULabel
15
+ Feature
16
+ FeatureSet
17
+ Param
18
+
19
+ Key functionality.
20
+
21
+ .. autosummary::
22
+ :toctree: .
23
+
24
+ context
25
+ connect
26
+ Curator
27
+ view
28
+ save
29
+
30
+ Modules and settings.
31
+
32
+ .. autosummary::
33
+ :toctree: .
34
+
35
+ integrations
36
+ settings
37
+ setup
38
+ UPath
39
+ core
40
+
41
+ """
42
+
43
+ # denote a release candidate for 0.1.0 with 0.1rc1, 0.1a1, 0.1b1, etc.
44
+ __version__ = "0.76.8"
45
+
46
+ import os as _os
47
+
48
+ import lamindb_setup as _lamindb_setup
49
+ from lamindb_setup._check_setup import InstanceNotSetupError as _InstanceNotSetupError
50
+ from lamindb_setup._check_setup import _check_instance_setup
51
+ from lamindb_setup._connect_instance import connect
52
+ from lamindb_setup.core.upath import UPath
53
+
54
+ from . import setup
55
+
56
+
57
+ def __getattr__(name):
58
+ raise _InstanceNotSetupError()
59
+
60
+
61
+ if _check_instance_setup(from_lamindb=True):
62
+ del _InstanceNotSetupError
63
+ del __getattr__ # delete so that imports work out
64
+ from lnschema_core.models import (
65
+ Artifact,
66
+ Collection,
67
+ Feature,
68
+ FeatureSet,
69
+ Param,
70
+ Run,
71
+ Storage,
72
+ Transform,
73
+ ULabel,
74
+ User,
75
+ )
76
+
77
+ from . import core # isort: split
78
+ from . import (
79
+ _artifact,
80
+ _can_validate,
81
+ _collection,
82
+ _curate,
83
+ _feature,
84
+ _feature_set,
85
+ _is_versioned,
86
+ _parents,
87
+ _record,
88
+ _run,
89
+ _storage,
90
+ _transform,
91
+ _ulabel,
92
+ integrations,
93
+ )
94
+ from ._curate import Curator
95
+ from ._save import save
96
+ from ._view import view
97
+ from .core._context import context
98
+ from .core._settings import settings
99
+
100
+ # schema modules
101
+ if not _os.environ.get("LAMINDB_MULTI_INSTANCE") == "true":
102
+ from lamindb_setup._init_instance import (
103
+ reload_schema_modules as _reload_schema_modules,
104
+ )
105
+
106
+ _reload_schema_modules(_lamindb_setup.settings.instance)
107
+
108
+ track = context.track # backward compat
109
+ finish = context.finish # backward compat
110
+ Curate = Curator # backward compat
111
+ settings.__doc__ = """Global settings (:class:`~lamindb.core.Settings`)."""
112
+ context.__doc__ = """Global run context (:class:`~lamindb.core.Context`)."""
113
+ from django.db.models import Q