endoreg-db 0.8.8.0__py3-none-any.whl → 0.8.9.2__py3-none-any.whl
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- endoreg_db/data/__init__.py +22 -8
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +0 -1
- endoreg_db/data/examination/examinations/data.yaml +114 -14
- endoreg_db/data/examination/time-type/data.yaml +0 -3
- endoreg_db/data/examination_indication/endoscopy.yaml +108 -173
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +0 -70
- endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +33 -37
- endoreg_db/data/finding/00_generic.yaml +35 -0
- endoreg_db/data/finding/00_generic_complication.yaml +9 -0
- endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
- endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
- endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
- endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
- endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
- endoreg_db/data/finding_classification/00_generic.yaml +44 -0
- endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
- endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
- endoreg_db/data/finding_classification/{colonoscopy_bowel_preparation.yaml → 02_colonoscopy_baseline.yaml} +35 -20
- endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
- endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
- endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
- endoreg_db/data/finding_classification_choice/{yes_no_na.yaml → 00_generic.yaml} +5 -1
- endoreg_db/data/finding_classification_choice/{examination_setting_generic_types.yaml → 00_generic_baseline.yaml} +10 -2
- endoreg_db/data/finding_classification_choice/{complication_generic_types.yaml → 00_generic_complication.yaml} +1 -1
- endoreg_db/data/finding_classification_choice/{histology.yaml → 00_generic_histology.yaml} +1 -4
- endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
- endoreg_db/data/finding_classification_choice/{bowel_preparation.yaml → 02_colonoscopy_bowel_preparation.yaml} +1 -30
- endoreg_db/data/{_examples/finding_classification_choice/colonoscopy_not_complete_reason.yaml → finding_classification_choice/02_colonoscopy_generic.yaml} +1 -1
- endoreg_db/data/finding_classification_choice/{histology_polyp.yaml → 02_colonoscopy_histology.yaml} +1 -1
- endoreg_db/data/{_examples/finding_classification_choice/colonoscopy_location.yaml → finding_classification_choice/02_colonoscopy_location.yaml} +23 -4
- endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
- endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
- endoreg_db/data/{_examples/finding_classification_choice/colon_lesion_paris.yaml → finding_classification_choice/02_colonoscopy_polyp_morphology.yaml} +26 -8
- endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
- endoreg_db/data/finding_classification_type/{colonoscopy_basic.yaml → 00_generic.yaml} +18 -13
- endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
- endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
- endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
- endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
- endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
- endoreg_db/data/finding_type/data.yaml +8 -12
- endoreg_db/data/requirement/01_patient_data.yaml +93 -0
- endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +0 -2
- endoreg_db/data/requirement_set/90_coloreg.yaml +20 -8
- endoreg_db/exceptions.py +0 -1
- endoreg_db/forms/examination_form.py +1 -1
- endoreg_db/helpers/data_loader.py +124 -52
- endoreg_db/helpers/default_objects.py +116 -81
- endoreg_db/import_files/__init__.py +27 -0
- endoreg_db/import_files/context/__init__.py +7 -0
- endoreg_db/import_files/context/default_sensitive_meta.py +81 -0
- endoreg_db/import_files/context/ensure_center.py +17 -0
- endoreg_db/import_files/context/file_lock.py +66 -0
- endoreg_db/import_files/context/import_context.py +43 -0
- endoreg_db/import_files/context/validate_directories.py +56 -0
- endoreg_db/import_files/file_storage/__init__.py +15 -0
- endoreg_db/import_files/file_storage/create_report_file.py +76 -0
- endoreg_db/import_files/file_storage/create_video_file.py +75 -0
- endoreg_db/import_files/file_storage/sensitive_meta_storage.py +39 -0
- endoreg_db/import_files/file_storage/state_management.py +496 -0
- endoreg_db/import_files/file_storage/storage.py +36 -0
- endoreg_db/import_files/import_service.md +26 -0
- endoreg_db/import_files/processing/__init__.py +11 -0
- endoreg_db/import_files/processing/report_processing/report_anonymization.py +94 -0
- endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
- endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
- endoreg_db/import_files/pseudonymization/fake.py +52 -0
- endoreg_db/import_files/pseudonymization/k_anonymity.py +182 -0
- endoreg_db/import_files/pseudonymization/k_pseudonymity.py +128 -0
- endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
- endoreg_db/import_files/report_import_service.py +141 -0
- endoreg_db/import_files/video_import_service.py +150 -0
- endoreg_db/management/commands/import_report.py +130 -65
- endoreg_db/management/commands/import_video_with_classification.py +1 -1
- endoreg_db/management/commands/load_ai_model_data.py +5 -5
- endoreg_db/management/commands/load_ai_model_label_data.py +9 -7
- endoreg_db/management/commands/load_base_db_data.py +5 -134
- endoreg_db/management/commands/load_contraindication_data.py +14 -16
- endoreg_db/management/commands/load_disease_classification_choices_data.py +15 -18
- endoreg_db/management/commands/load_disease_classification_data.py +15 -18
- endoreg_db/management/commands/load_disease_data.py +25 -28
- endoreg_db/management/commands/load_endoscope_data.py +20 -27
- endoreg_db/management/commands/load_event_data.py +14 -16
- endoreg_db/management/commands/load_examination_data.py +31 -44
- endoreg_db/management/commands/load_examination_indication_data.py +20 -21
- endoreg_db/management/commands/load_finding_data.py +52 -80
- endoreg_db/management/commands/load_information_source.py +21 -23
- endoreg_db/management/commands/load_lab_value_data.py +17 -26
- endoreg_db/management/commands/load_medication_data.py +13 -12
- endoreg_db/management/commands/load_organ_data.py +15 -19
- endoreg_db/management/commands/load_pdf_type_data.py +19 -18
- endoreg_db/management/commands/load_profession_data.py +14 -17
- endoreg_db/management/commands/load_qualification_data.py +20 -23
- endoreg_db/management/commands/load_report_reader_flag_data.py +17 -19
- endoreg_db/management/commands/load_requirement_data.py +14 -20
- endoreg_db/management/commands/load_risk_data.py +7 -6
- endoreg_db/management/commands/load_shift_data.py +20 -23
- endoreg_db/management/commands/load_tag_data.py +8 -11
- endoreg_db/management/commands/load_unit_data.py +17 -19
- endoreg_db/management/commands/start_filewatcher.py +46 -37
- endoreg_db/management/commands/validate_video_files.py +1 -5
- endoreg_db/migrations/0001_initial.py +1360 -1812
- endoreg_db/models/administration/person/patient/patient.py +72 -46
- endoreg_db/models/label/__init__.py +2 -2
- endoreg_db/models/label/annotation/video_segmentation_annotation.py +18 -26
- endoreg_db/models/label/label_video_segment/label_video_segment.py +23 -1
- endoreg_db/models/media/pdf/raw_pdf.py +136 -64
- endoreg_db/models/media/pdf/report_reader/report_reader_config.py +34 -10
- endoreg_db/models/media/processing_history/__init__.py +5 -0
- endoreg_db/models/media/processing_history/processing_history.py +96 -0
- endoreg_db/models/media/video/create_from_file.py +101 -31
- endoreg_db/models/media/video/video_file.py +125 -105
- endoreg_db/models/media/video/video_file_io.py +31 -26
- endoreg_db/models/medical/contraindication/README.md +1 -0
- endoreg_db/models/medical/examination/examination.py +28 -8
- endoreg_db/models/medical/examination/examination_indication.py +13 -79
- endoreg_db/models/medical/examination/examination_time.py +8 -3
- endoreg_db/models/medical/finding/finding.py +5 -12
- endoreg_db/models/medical/finding/finding_classification.py +18 -37
- endoreg_db/models/medical/finding/finding_intervention.py +7 -9
- endoreg_db/models/medical/hardware/endoscope.py +6 -0
- endoreg_db/models/medical/patient/medication_examples.py +5 -1
- endoreg_db/models/medical/patient/patient_finding.py +1 -1
- endoreg_db/models/metadata/pdf_meta.py +22 -10
- endoreg_db/models/metadata/sensitive_meta.py +3 -0
- endoreg_db/models/metadata/sensitive_meta_logic.py +200 -124
- endoreg_db/models/other/information_source.py +27 -6
- endoreg_db/models/report/__init__.py +0 -0
- endoreg_db/models/report/images.py +0 -0
- endoreg_db/models/report/report.py +6 -0
- endoreg_db/models/requirement/requirement.py +59 -399
- endoreg_db/models/requirement/requirement_operator.py +86 -98
- endoreg_db/models/state/audit_ledger.py +4 -5
- endoreg_db/models/state/raw_pdf.py +69 -30
- endoreg_db/models/state/video.py +65 -49
- endoreg_db/models/upload_job.py +33 -9
- endoreg_db/models/utils.py +27 -23
- endoreg_db/queries/__init__.py +3 -1
- endoreg_db/schemas/examination_evaluation.py +1 -1
- endoreg_db/serializers/__init__.py +2 -8
- endoreg_db/serializers/label_video_segment/label_video_segment.py +2 -29
- endoreg_db/serializers/meta/__init__.py +1 -6
- endoreg_db/serializers/misc/sensitive_patient_data.py +50 -26
- endoreg_db/serializers/patient_examination/patient_examination.py +3 -3
- endoreg_db/serializers/pdf/anony_text_validation.py +39 -23
- endoreg_db/serializers/video/video_file_list.py +65 -34
- endoreg_db/services/__old/pdf_import.py +1487 -0
- endoreg_db/services/__old/video_import.py +1306 -0
- endoreg_db/services/anonymization.py +63 -26
- endoreg_db/services/lookup_service.py +28 -28
- endoreg_db/services/lookup_store.py +2 -2
- endoreg_db/services/pdf_import.py +0 -1480
- endoreg_db/services/report_import.py +10 -0
- endoreg_db/services/video_import.py +6 -1165
- endoreg_db/tasks/upload_tasks.py +79 -70
- endoreg_db/tasks/video_ingest.py +8 -4
- endoreg_db/urls/__init__.py +0 -14
- endoreg_db/urls/ai.py +32 -0
- endoreg_db/urls/media.py +21 -24
- endoreg_db/utils/dataloader.py +87 -57
- endoreg_db/utils/paths.py +110 -46
- endoreg_db/utils/pipelines/Readme.md +1 -1
- endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +97 -0
- endoreg_db/utils/video/ffmpeg_wrapper.py +217 -52
- endoreg_db/views/__init__.py +85 -173
- endoreg_db/views/ai/__init__.py +8 -0
- endoreg_db/views/ai/label.py +155 -0
- endoreg_db/views/anonymization/media_management.py +8 -7
- endoreg_db/views/anonymization/overview.py +97 -68
- endoreg_db/views/anonymization/validate.py +25 -21
- endoreg_db/views/media/__init__.py +5 -20
- endoreg_db/views/media/pdf_media.py +109 -65
- endoreg_db/views/media/sensitive_metadata.py +163 -148
- endoreg_db/views/meta/__init__.py +0 -8
- endoreg_db/views/misc/__init__.py +1 -7
- endoreg_db/views/misc/upload_views.py +94 -93
- endoreg_db/views/report/__init__.py +7 -0
- endoreg_db/views/{pdf → report}/reimport.py +45 -24
- endoreg_db/views/{pdf/pdf_stream.py → report/report_stream.py} +40 -32
- endoreg_db/views/requirement/lookup_store.py +22 -90
- endoreg_db/views/video/__init__.py +23 -22
- endoreg_db/views/video/correction.py +201 -172
- endoreg_db/views/video/reimport.py +1 -1
- endoreg_db/views/{media/video_segments.py → video/segments_crud.py} +75 -37
- endoreg_db/views/video/{video_meta.py → video_meta_stats.py} +2 -2
- endoreg_db/views/video/video_stream.py +7 -8
- {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/METADATA +2 -2
- {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/RECORD +217 -335
- {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/WHEEL +1 -1
- endoreg_db/data/_examples/disease.yaml +0 -55
- endoreg_db/data/_examples/disease_classification.yaml +0 -13
- endoreg_db/data/_examples/disease_classification_choice.yaml +0 -62
- endoreg_db/data/_examples/event.yaml +0 -64
- endoreg_db/data/_examples/examination.yaml +0 -72
- endoreg_db/data/_examples/finding/anatomy_colon.yaml +0 -128
- endoreg_db/data/_examples/finding/colonoscopy.yaml +0 -40
- endoreg_db/data/_examples/finding/colonoscopy_bowel_prep.yaml +0 -56
- endoreg_db/data/_examples/finding/complication.yaml +0 -16
- endoreg_db/data/_examples/finding/data.yaml +0 -105
- endoreg_db/data/_examples/finding/examination_setting.yaml +0 -16
- endoreg_db/data/_examples/finding/medication_related.yaml +0 -18
- endoreg_db/data/_examples/finding/outcome.yaml +0 -12
- endoreg_db/data/_examples/finding_classification/colonoscopy_bowel_preparation.yaml +0 -68
- endoreg_db/data/_examples/finding_classification/colonoscopy_jnet.yaml +0 -22
- endoreg_db/data/_examples/finding_classification/colonoscopy_kudo.yaml +0 -25
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_circularity.yaml +0 -20
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_planarity.yaml +0 -24
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_size.yaml +0 -68
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_surface.yaml +0 -20
- endoreg_db/data/_examples/finding_classification/colonoscopy_location.yaml +0 -80
- endoreg_db/data/_examples/finding_classification/colonoscopy_lst.yaml +0 -21
- endoreg_db/data/_examples/finding_classification/colonoscopy_nice.yaml +0 -20
- endoreg_db/data/_examples/finding_classification/colonoscopy_paris.yaml +0 -26
- endoreg_db/data/_examples/finding_classification/colonoscopy_sano.yaml +0 -22
- endoreg_db/data/_examples/finding_classification/colonoscopy_summary.yaml +0 -53
- endoreg_db/data/_examples/finding_classification/complication_generic.yaml +0 -25
- endoreg_db/data/_examples/finding_classification/examination_setting_generic.yaml +0 -40
- endoreg_db/data/_examples/finding_classification/histology_colo.yaml +0 -51
- endoreg_db/data/_examples/finding_classification/intervention_required.yaml +0 -26
- endoreg_db/data/_examples/finding_classification/medication_related.yaml +0 -23
- endoreg_db/data/_examples/finding_classification/visualized.yaml +0 -33
- endoreg_db/data/_examples/finding_classification_choice/bowel_preparation.yaml +0 -78
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_circularity_default.yaml +0 -32
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_jnet.yaml +0 -15
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_kudo.yaml +0 -23
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_lst.yaml +0 -15
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_nice.yaml +0 -17
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_planarity_default.yaml +0 -49
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_sano.yaml +0 -14
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_surface_intact_default.yaml +0 -36
- endoreg_db/data/_examples/finding_classification_choice/colonoscopy_size.yaml +0 -82
- endoreg_db/data/_examples/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +0 -15
- endoreg_db/data/_examples/finding_classification_choice/complication_generic_types.yaml +0 -15
- endoreg_db/data/_examples/finding_classification_choice/examination_setting_generic_types.yaml +0 -15
- endoreg_db/data/_examples/finding_classification_choice/histology.yaml +0 -24
- endoreg_db/data/_examples/finding_classification_choice/histology_polyp.yaml +0 -20
- endoreg_db/data/_examples/finding_classification_choice/outcome.yaml +0 -19
- endoreg_db/data/_examples/finding_classification_choice/yes_no_na.yaml +0 -11
- endoreg_db/data/_examples/finding_classification_type/colonoscopy_basic.yaml +0 -48
- endoreg_db/data/_examples/finding_intervention/endoscopy.yaml +0 -43
- endoreg_db/data/_examples/finding_intervention/endoscopy_colonoscopy.yaml +0 -168
- endoreg_db/data/_examples/finding_intervention/endoscopy_egd.yaml +0 -128
- endoreg_db/data/_examples/finding_intervention/endoscopy_ercp.yaml +0 -32
- endoreg_db/data/_examples/finding_intervention/endoscopy_eus_lower.yaml +0 -9
- endoreg_db/data/_examples/finding_intervention/endoscopy_eus_upper.yaml +0 -36
- endoreg_db/data/_examples/finding_intervention_type/endoscopy.yaml +0 -15
- endoreg_db/data/_examples/finding_type/data.yaml +0 -43
- endoreg_db/data/_examples/requirement/age.yaml +0 -26
- endoreg_db/data/_examples/requirement/gender.yaml +0 -25
- endoreg_db/data/_examples/requirement_set/01_endoscopy_generic.yaml +0 -48
- endoreg_db/data/_examples/requirement_set/colonoscopy_austria_screening.yaml +0 -57
- endoreg_db/data/_examples/requirement_set/endoscopy_bleeding_risk.yaml +0 -52
- endoreg_db/data/_examples/yaml_examples.xlsx +0 -0
- endoreg_db/data/finding/anatomy_colon.yaml +0 -128
- endoreg_db/data/finding/colonoscopy.yaml +0 -40
- endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +0 -56
- endoreg_db/data/finding/complication.yaml +0 -16
- endoreg_db/data/finding/data.yaml +0 -105
- endoreg_db/data/finding/examination_setting.yaml +0 -16
- endoreg_db/data/finding/medication_related.yaml +0 -18
- endoreg_db/data/finding/outcome.yaml +0 -12
- endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +0 -22
- endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +0 -25
- endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +0 -20
- endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +0 -24
- endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +0 -38
- endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +0 -20
- endoreg_db/data/finding_classification/colonoscopy_location.yaml +0 -49
- endoreg_db/data/finding_classification/colonoscopy_lst.yaml +0 -21
- endoreg_db/data/finding_classification/colonoscopy_nice.yaml +0 -20
- endoreg_db/data/finding_classification/colonoscopy_paris.yaml +0 -26
- endoreg_db/data/finding_classification/colonoscopy_sano.yaml +0 -22
- endoreg_db/data/finding_classification/colonoscopy_summary.yaml +0 -53
- endoreg_db/data/finding_classification/complication_generic.yaml +0 -25
- endoreg_db/data/finding_classification/examination_setting_generic.yaml +0 -40
- endoreg_db/data/finding_classification/histology_colo.yaml +0 -43
- endoreg_db/data/finding_classification/intervention_required.yaml +0 -26
- endoreg_db/data/finding_classification/medication_related.yaml +0 -23
- endoreg_db/data/finding_classification/visualized.yaml +0 -33
- endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +0 -32
- endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +0 -15
- endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +0 -23
- endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +0 -15
- endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +0 -17
- endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +0 -57
- endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +0 -49
- endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +0 -14
- endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +0 -36
- endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +0 -229
- endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +0 -19
- endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +0 -82
- endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +0 -15
- endoreg_db/data/finding_classification_choice/outcome.yaml +0 -19
- endoreg_db/data/finding_intervention/endoscopy.yaml +0 -43
- endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +0 -168
- endoreg_db/data/finding_intervention/endoscopy_egd.yaml +0 -128
- endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +0 -32
- endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +0 -9
- endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +0 -36
- endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +0 -79
- endoreg_db/data/requirement/age.yaml +0 -26
- endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +0 -45
- endoreg_db/data/requirement/disease_cardiovascular.yaml +0 -79
- endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +0 -41
- endoreg_db/data/requirement/disease_hepatology.yaml +0 -12
- endoreg_db/data/requirement/disease_misc.yaml +0 -12
- endoreg_db/data/requirement/disease_renal.yaml +0 -96
- endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +0 -59
- endoreg_db/data/requirement/event_cardiology.yaml +0 -251
- endoreg_db/data/requirement/event_requirements.yaml +0 -145
- endoreg_db/data/requirement/finding_colon_polyp.yaml +0 -50
- endoreg_db/data/requirement/gender.yaml +0 -25
- endoreg_db/data/requirement/lab_value.yaml +0 -441
- endoreg_db/data/requirement/medication.yaml +0 -93
- endoreg_db/data/requirement_operator/age.yaml +0 -13
- endoreg_db/data/requirement_operator/lab_operators.yaml +0 -129
- endoreg_db/data/requirement_operator/model_operators.yaml +0 -96
- endoreg_db/management/commands/init_default_ai_model.py +0 -112
- endoreg_db/management/commands/reset_celery_schedule.py +0 -9
- endoreg_db/management/commands/validate_video.py +0 -204
- endoreg_db/migrations/0002_requirementset_depends_on.py +0 -18
- endoreg_db/migrations/_old/0001_initial.py +0 -1857
- endoreg_db/migrations/_old/0002_add_video_correction_models.py +0 -52
- endoreg_db/migrations/_old/0003_add_center_display_name.py +0 -30
- endoreg_db/migrations/_old/0004_employee_city_employee_post_code_employee_street_and_more.py +0 -68
- endoreg_db/migrations/_old/0004_remove_casetemplate_rules_and_more.py +0 -77
- endoreg_db/migrations/_old/0005_merge_20251111_1003.py +0 -14
- endoreg_db/migrations/_old/0006_sensitivemeta_anonymized_text_and_more.py +0 -68
- endoreg_db/migrations/_old/0007_remove_rule_attribute_dtype_remove_rule_rule_type_and_more.py +0 -89
- endoreg_db/migrations/_old/0008_remove_event_event_classification_and_more.py +0 -27
- endoreg_db/migrations/_old/0009_alter_modelmeta_options_and_more.py +0 -21
- endoreg_db/renames.yml +0 -8
- endoreg_db/serializers/_old/raw_pdf_meta_validation.py +0 -223
- endoreg_db/serializers/_old/raw_video_meta_validation.py +0 -179
- endoreg_db/serializers/_old/video.py +0 -71
- endoreg_db/serializers/meta/pdf_file_meta_extraction.py +0 -115
- endoreg_db/serializers/meta/report_meta.py +0 -53
- endoreg_db/serializers/report/__init__.py +0 -9
- endoreg_db/serializers/report/mixins.py +0 -45
- endoreg_db/serializers/report/report.py +0 -105
- endoreg_db/serializers/report/report_list.py +0 -22
- endoreg_db/serializers/report/secure_file_url.py +0 -26
- endoreg_db/services/requirements_object.py +0 -147
- endoreg_db/services/storage_aware_video_processor.py +0 -370
- endoreg_db/urls/files.py +0 -6
- endoreg_db/urls/label_video_segment_validate.py +0 -33
- endoreg_db/urls/label_video_segments.py +0 -46
- endoreg_db/views/label/__init__.py +0 -5
- endoreg_db/views/label/label.py +0 -15
- endoreg_db/views/label_video_segment/__init__.py +0 -16
- endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +0 -44
- endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +0 -50
- endoreg_db/views/label_video_segment/label_video_segment.py +0 -77
- endoreg_db/views/label_video_segment/label_video_segment_by_label.py +0 -174
- endoreg_db/views/label_video_segment/label_video_segment_detail.py +0 -73
- endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +0 -46
- endoreg_db/views/label_video_segment/validate.py +0 -226
- endoreg_db/views/media/segments.py +0 -71
- endoreg_db/views/meta/available_files_list.py +0 -146
- endoreg_db/views/meta/report_meta.py +0 -53
- endoreg_db/views/meta/sensitive_meta_detail.py +0 -85
- endoreg_db/views/misc/secure_file_serving_view.py +0 -80
- endoreg_db/views/misc/secure_file_url_view.py +0 -84
- endoreg_db/views/misc/secure_url_validate.py +0 -79
- endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +0 -164
- endoreg_db/views/patient_finding_location/__init__.py +0 -5
- endoreg_db/views/patient_finding_location/pfl_create.py +0 -70
- endoreg_db/views/patient_finding_morphology/__init__.py +0 -5
- endoreg_db/views/patient_finding_morphology/pfm_create.py +0 -70
- endoreg_db/views/pdf/__init__.py +0 -8
- endoreg_db/views/video/segmentation.py +0 -274
- endoreg_db/views/video/task_status.py +0 -49
- endoreg_db/views/video/timeline.py +0 -46
- endoreg_db/views/video/video_analyze.py +0 -52
- /endoreg_db/data/requirement/{colon_polyp_intervention.yaml → old/colon_polyp_intervention.yaml} +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/colonoscopy_baseline_austria.yaml +0 -0
- /endoreg_db/data/requirement/{coloreg_colon_polyp.yaml → old/coloreg_colon_polyp.yaml} +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/disease_cardiovascular.yaml +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/disease_classification_choice_cardiovascular.yaml +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/disease_hepatology.yaml +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/disease_misc.yaml +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/disease_renal.yaml +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/endoscopy_bleeding_risk.yaml +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/event_cardiology.yaml +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/event_requirements.yaml +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/finding_colon_polyp.yaml +0 -0
- /endoreg_db/{urls/sensitive_meta.py → data/requirement/old/gender.yaml} +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/lab_value.yaml +0 -0
- /endoreg_db/data/{_examples/requirement → requirement/old}/medication.yaml +0 -0
- /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/age.yaml +0 -0
- /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/lab_operators.yaml +0 -0
- /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/model_operators.yaml +0 -0
- /endoreg_db/{views/pdf/pdf_stream_views.py → import_files/pseudonymization/__init__.py} +0 -0
- /endoreg_db/utils/requirement_operator_logic/{lab_value_operators.py → _old/lab_value_operators.py} +0 -0
- /endoreg_db/utils/requirement_operator_logic/{model_evaluators.py → _old/model_evaluators.py} +0 -0
- {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/licenses/LICENSE +0 -0
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# Generated by Django 5.2.5 on 2025-09-15 11:52
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import django.core.validators
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import django.db.models.deletion
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import pathlib
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import uuid
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from django.conf import settings
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from django.db import migrations, models
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class Migration(migrations.Migration):
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initial = True
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dependencies = [
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migrations.swappable_dependency(settings.AUTH_USER_MODEL),
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]
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operations = [
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migrations.CreateModel(
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name='AiModel',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255, unique=True)),
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('description', models.TextField(blank=True, null=True)),
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('model_subtype', models.CharField(blank=True, max_length=255, null=True)),
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255)),
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('description', models.TextField(blank=True, null=True)),
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migrations.CreateModel(
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name='CaseTemplateRuleValue',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255)),
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('description', models.TextField(blank=True, null=True)),
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('fk_value', models.CharField(blank=True, max_length=255, null=True)),
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('numeric_value', models.FloatField(blank=True, null=True)),
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('text_value', models.CharField(blank=True, max_length=255, null=True)),
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255)),
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('description', models.TextField(blank=True, null=True)),
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('distribution_type', models.CharField(choices=[('single_categorical', 'single_categorical'), ('multiple_categorical', 'multiple_categorical'), ('numeric', 'numeric')], max_length=255)),
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255)),
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('description', models.TextField(blank=True, null=True)),
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('distribution_type', models.CharField(choices=[('uniform', 'Uniform'), ('normal', 'Normal')], max_length=20)),
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('mode', models.CharField(choices=[('date', 'Date'), ('timedelta', 'Timedelta')], max_length=20)),
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('date_min', models.DateField(blank=True, null=True)),
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('date_std_dev', models.IntegerField(blank=True, null=True)),
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('timedelta_days_min', models.IntegerField(blank=True, null=True)),
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('timedelta_days_max', models.IntegerField(blank=True, null=True)),
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('timedelta_days_mean', models.IntegerField(blank=True, null=True)),
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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options={
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migrations.CreateModel(
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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migrations.CreateModel(
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('name', models.CharField(max_length=100, unique=True)),
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('name_de', models.CharField(max_length=100, null=True, unique=True)),
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('frame_rate_num', models.IntegerField(blank=True, null=True)),
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('frame_rate_den', models.IntegerField(blank=True, null=True)),
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('codec_name', models.CharField(blank=True, max_length=50, null=True)),
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('pixel_format', models.CharField(blank=True, max_length=50, null=True)),
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],
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migrations.CreateModel(
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name='FindingClassificationChoice',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255, unique=True)),
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('name_de', models.CharField(max_length=255, null=True, unique=True)),
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('name_en', models.CharField(max_length=255, null=True, unique=True)),
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('description', models.TextField(blank=True)),
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('description_de', models.TextField(blank=True, null=True)),
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('description_en', models.TextField(blank=True, null=True)),
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('subcategories', models.JSONField(default=dict)),
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('numerical_descriptors', models.JSONField(default=dict)),
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],
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migrations.CreateModel(
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name='FindingClassificationType',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255, unique=True)),
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('description', models.TextField(blank=True)),
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],
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),
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migrations.CreateModel(
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name='FindingInterventionType',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=100, unique=True)),
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('description', models.TextField(blank=True, null=True)),
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],
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),
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migrations.CreateModel(
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name='FindingType',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=100, unique=True)),
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('description', models.TextField(blank=True, null=True)),
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],
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migrations.CreateModel(
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name='FirstName',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255, unique=True)),
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],
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),
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migrations.CreateModel(
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name='Gender',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255)),
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('abbreviation', models.CharField(max_length=255, null=True)),
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('description', models.TextField(blank=True, null=True)),
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],
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),
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migrations.CreateModel(
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name='Label',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255)),
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('description', models.TextField(blank=True, null=True)),
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],
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),
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migrations.CreateModel(
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name='LabelType',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255)),
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('description', models.TextField(blank=True, null=True)),
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],
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),
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migrations.CreateModel(
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name='LastName',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255, unique=True)),
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],
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),
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migrations.CreateModel(
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name='Medication',
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fields=[
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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('name', models.CharField(max_length=255, unique=True)),
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('adapt_to_renal_function', models.BooleanField(default=False)),
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('adapt_to_hepatic_function', models.BooleanField(default=False)),
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('adapt_to_indication', models.BooleanField(default=False)),
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('adapt_to_age', models.BooleanField(default=False)),
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('adapt_to_weight', models.BooleanField(default=False)),
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('adapt_to_risk', models.BooleanField(default=False)),
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],
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|
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),
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migrations.CreateModel(
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name='MedicationIndicationType',
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289
|
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fields=[
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|
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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|
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('name', models.CharField(max_length=255, unique=True)),
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|
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],
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|
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),
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|
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migrations.CreateModel(
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|
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name='MedicationIntakeTime',
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296
|
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fields=[
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297
|
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
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298
|
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('name', models.CharField(max_length=255, unique=True)),
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|
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('repeats', models.CharField(default='daily', max_length=20)),
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300
|
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('time', models.TimeField()),
|
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301
|
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],
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|
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),
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303
|
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migrations.CreateModel(
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|
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name='ModelType',
|
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305
|
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fields=[
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306
|
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
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307
|
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('name', models.CharField(max_length=255)),
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|
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('description', models.TextField(blank=True, null=True)),
|
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|
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],
|
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310
|
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),
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311
|
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migrations.CreateModel(
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312
|
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name='MultipleCategoricalValueDistribution',
|
|
313
|
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fields=[
|
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314
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
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315
|
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('name', models.CharField(max_length=100)),
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316
|
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('categories', models.JSONField()),
|
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317
|
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('min_count', models.IntegerField()),
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318
|
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('max_count', models.IntegerField()),
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319
|
-
('count_distribution_type', models.CharField(choices=[('uniform', 'Uniform'), ('normal', 'Normal')], max_length=20)),
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320
|
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('count_mean', models.FloatField(blank=True, null=True)),
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|
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('count_std_dev', models.FloatField(blank=True, null=True)),
|
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|
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],
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|
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options={
|
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|
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'abstract': False,
|
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325
|
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},
|
|
326
|
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),
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327
|
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migrations.CreateModel(
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328
|
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name='NumericValueDistribution',
|
|
329
|
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fields=[
|
|
330
|
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
331
|
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('name', models.CharField(max_length=100)),
|
|
332
|
-
('distribution_type', models.CharField(choices=[('uniform', 'Uniform'), ('normal', 'Normal'), ('skewed_normal', 'Skewed Normal')], max_length=20)),
|
|
333
|
-
('min_descriptor', models.CharField(max_length=20)),
|
|
334
|
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('max_descriptor', models.CharField(max_length=20)),
|
|
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|
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],
|
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|
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options={
|
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337
|
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'abstract': False,
|
|
338
|
-
},
|
|
339
|
-
),
|
|
340
|
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migrations.CreateModel(
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341
|
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name='PatientLabSampleType',
|
|
342
|
-
fields=[
|
|
343
|
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
344
|
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('name', models.CharField(max_length=255)),
|
|
345
|
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('description', models.TextField(blank=True, null=True)),
|
|
346
|
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],
|
|
347
|
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),
|
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348
|
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migrations.CreateModel(
|
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349
|
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name='PdfType',
|
|
350
|
-
fields=[
|
|
351
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
352
|
-
('name', models.CharField(max_length=255)),
|
|
353
|
-
],
|
|
354
|
-
),
|
|
355
|
-
migrations.CreateModel(
|
|
356
|
-
name='Product',
|
|
357
|
-
fields=[
|
|
358
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
359
|
-
('name', models.CharField(max_length=255)),
|
|
360
|
-
],
|
|
361
|
-
),
|
|
362
|
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migrations.CreateModel(
|
|
363
|
-
name='ProductGroup',
|
|
364
|
-
fields=[
|
|
365
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
366
|
-
('name', models.CharField(max_length=255)),
|
|
367
|
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],
|
|
368
|
-
),
|
|
369
|
-
migrations.CreateModel(
|
|
370
|
-
name='Profession',
|
|
371
|
-
fields=[
|
|
372
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
373
|
-
('name', models.CharField(max_length=100)),
|
|
374
|
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('description', models.TextField(blank=True, null=True)),
|
|
375
|
-
],
|
|
376
|
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),
|
|
377
|
-
migrations.CreateModel(
|
|
378
|
-
name='Qualification',
|
|
379
|
-
fields=[
|
|
380
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
381
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
382
|
-
('description', models.TextField(blank=True, null=True)),
|
|
383
|
-
('is_active', models.BooleanField(default=True)),
|
|
384
|
-
],
|
|
385
|
-
),
|
|
386
|
-
migrations.CreateModel(
|
|
387
|
-
name='QualificationType',
|
|
388
|
-
fields=[
|
|
389
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
390
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
391
|
-
('description', models.TextField(blank=True, null=True)),
|
|
392
|
-
('is_active', models.BooleanField(default=True)),
|
|
393
|
-
],
|
|
394
|
-
),
|
|
395
|
-
migrations.CreateModel(
|
|
396
|
-
name='RawPdfState',
|
|
397
|
-
fields=[
|
|
398
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
399
|
-
('text_meta_extracted', models.BooleanField(default=False, help_text='True if text metadata (OCR) has been extracted.')),
|
|
400
|
-
('initial_prediction_completed', models.BooleanField(default=False, help_text='True if initial AI prediction has run.')),
|
|
401
|
-
('sensitive_meta_processed', models.BooleanField(default=False, help_text='True if the video has been fully processed, meaning a anonymized person was created.')),
|
|
402
|
-
('anonymized', models.BooleanField(default=False, help_text='True if the anonymized video file has been created.')),
|
|
403
|
-
('anonymization_validated', models.BooleanField(default=False, help_text='True if the anonymization process has been validated and confirmed.')),
|
|
404
|
-
('processing_started', models.BooleanField(default=False, help_text='True if the processing has started, but not yet completed.')),
|
|
405
|
-
('processing_error', models.BooleanField(default=False, help_text='True if an error occurred during processing.')),
|
|
406
|
-
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
407
|
-
('date_modified', models.DateTimeField(auto_now=True)),
|
|
408
|
-
('was_created', models.BooleanField(default=True, help_text='True if this state was created for the first time.')),
|
|
409
|
-
('pdf_meta_extracted', models.BooleanField(default=False, help_text='True if PDF metadata has been extracted.')),
|
|
410
|
-
],
|
|
411
|
-
options={
|
|
412
|
-
'verbose_name': 'Raw PDF Processing State',
|
|
413
|
-
'verbose_name_plural': 'Raw PDF Processing States',
|
|
414
|
-
},
|
|
415
|
-
),
|
|
416
|
-
migrations.CreateModel(
|
|
417
|
-
name='ReportReaderFlag',
|
|
418
|
-
fields=[
|
|
419
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
420
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
421
|
-
('value', models.CharField(max_length=255)),
|
|
422
|
-
],
|
|
423
|
-
),
|
|
424
|
-
migrations.CreateModel(
|
|
425
|
-
name='RequirementOperator',
|
|
426
|
-
fields=[
|
|
427
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
428
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
429
|
-
('description', models.TextField(blank=True, null=True)),
|
|
430
|
-
('evaluation_function_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
431
|
-
],
|
|
432
|
-
),
|
|
433
|
-
migrations.CreateModel(
|
|
434
|
-
name='RequirementSetType',
|
|
435
|
-
fields=[
|
|
436
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
437
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
438
|
-
('description', models.TextField(blank=True, null=True)),
|
|
439
|
-
],
|
|
440
|
-
),
|
|
441
|
-
migrations.CreateModel(
|
|
442
|
-
name='RequirementType',
|
|
443
|
-
fields=[
|
|
444
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
445
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
446
|
-
('description', models.TextField(blank=True, null=True)),
|
|
447
|
-
],
|
|
448
|
-
),
|
|
449
|
-
migrations.CreateModel(
|
|
450
|
-
name='Resource',
|
|
451
|
-
fields=[
|
|
452
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
453
|
-
('name', models.CharField(max_length=255)),
|
|
454
|
-
],
|
|
455
|
-
),
|
|
456
|
-
migrations.CreateModel(
|
|
457
|
-
name='RiskType',
|
|
458
|
-
fields=[
|
|
459
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
460
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
461
|
-
('description', models.TextField(blank=True, null=True)),
|
|
462
|
-
],
|
|
463
|
-
),
|
|
464
|
-
migrations.CreateModel(
|
|
465
|
-
name='RuleAttributeDType',
|
|
466
|
-
fields=[
|
|
467
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
468
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
469
|
-
],
|
|
470
|
-
),
|
|
471
|
-
migrations.CreateModel(
|
|
472
|
-
name='RuleType',
|
|
473
|
-
fields=[
|
|
474
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
475
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
476
|
-
],
|
|
477
|
-
options={
|
|
478
|
-
'verbose_name': 'Rule Type',
|
|
479
|
-
'verbose_name_plural': 'Rule Types',
|
|
480
|
-
},
|
|
481
|
-
),
|
|
482
|
-
migrations.CreateModel(
|
|
483
|
-
name='ScheduledDays',
|
|
484
|
-
fields=[
|
|
485
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
486
|
-
('name', models.CharField(help_text='Name of the scheduled days.', max_length=255, unique=True)),
|
|
487
|
-
('working_days', models.BooleanField(blank=True, default=True, null=True)),
|
|
488
|
-
('non_working_days', models.BooleanField(blank=True, default=False, null=True)),
|
|
489
|
-
('limited_time', models.BooleanField(blank=True, default=False, null=True)),
|
|
490
|
-
('start_date', models.DateField(blank=True, null=True)),
|
|
491
|
-
('end_date', models.DateField(blank=True, null=True)),
|
|
492
|
-
],
|
|
493
|
-
),
|
|
494
|
-
migrations.CreateModel(
|
|
495
|
-
name='ShiftType',
|
|
496
|
-
fields=[
|
|
497
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
498
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
499
|
-
('description', models.TextField(blank=True, null=True)),
|
|
500
|
-
('is_active', models.BooleanField(default=True)),
|
|
501
|
-
],
|
|
502
|
-
),
|
|
503
|
-
migrations.CreateModel(
|
|
504
|
-
name='SingleCategoricalValueDistribution',
|
|
505
|
-
fields=[
|
|
506
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
507
|
-
('name', models.CharField(max_length=100)),
|
|
508
|
-
('categories', models.JSONField()),
|
|
509
|
-
],
|
|
510
|
-
options={
|
|
511
|
-
'abstract': False,
|
|
512
|
-
},
|
|
513
|
-
),
|
|
514
|
-
migrations.CreateModel(
|
|
515
|
-
name='Tag',
|
|
516
|
-
fields=[
|
|
517
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
518
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
519
|
-
],
|
|
520
|
-
options={
|
|
521
|
-
'verbose_name': 'Tag',
|
|
522
|
-
'verbose_name_plural': 'Tags',
|
|
523
|
-
},
|
|
524
|
-
),
|
|
525
|
-
migrations.CreateModel(
|
|
526
|
-
name='Unit',
|
|
527
|
-
fields=[
|
|
528
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
529
|
-
('name', models.CharField(max_length=100)),
|
|
530
|
-
('description', models.CharField(blank=True, max_length=100, null=True)),
|
|
531
|
-
('abbreviation', models.CharField(blank=True, max_length=25, null=True)),
|
|
532
|
-
],
|
|
533
|
-
),
|
|
534
|
-
migrations.CreateModel(
|
|
535
|
-
name='VideoImportMeta',
|
|
536
|
-
fields=[
|
|
537
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
538
|
-
('file_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
539
|
-
('video_anonymized', models.BooleanField(default=False)),
|
|
540
|
-
('video_patient_data_detected', models.BooleanField(default=False)),
|
|
541
|
-
('outside_detected', models.BooleanField(default=False)),
|
|
542
|
-
('patient_data_removed', models.BooleanField(default=False)),
|
|
543
|
-
('outside_removed', models.BooleanField(default=False)),
|
|
544
|
-
],
|
|
545
|
-
),
|
|
546
|
-
migrations.CreateModel(
|
|
547
|
-
name='VideoSegmentationLabel',
|
|
548
|
-
fields=[
|
|
549
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
550
|
-
('name', models.CharField(max_length=255)),
|
|
551
|
-
('description', models.TextField(blank=True, null=True)),
|
|
552
|
-
('color', models.CharField(blank=True, max_length=255, null=True)),
|
|
553
|
-
('order_priority', models.IntegerField(default=0)),
|
|
554
|
-
],
|
|
555
|
-
),
|
|
556
|
-
migrations.CreateModel(
|
|
557
|
-
name='VideoState',
|
|
558
|
-
fields=[
|
|
559
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
560
|
-
('frames_extracted', models.BooleanField(default=False, help_text='True if raw frames have been extracted to files.')),
|
|
561
|
-
('frames_initialized', models.BooleanField(default=False, help_text='True if Frame DB objects have been created.')),
|
|
562
|
-
('frame_count', models.PositiveIntegerField(blank=True, help_text='Number of frames extracted/initialized.', null=True)),
|
|
563
|
-
('video_meta_extracted', models.BooleanField(default=False, help_text='True if VideoMeta (technical specs) has been extracted.')),
|
|
564
|
-
('text_meta_extracted', models.BooleanField(default=False, help_text='True if text metadata (OCR) has been extracted.')),
|
|
565
|
-
('initial_prediction_completed', models.BooleanField(default=False, help_text='True if initial AI prediction has run.')),
|
|
566
|
-
('lvs_created', models.BooleanField(default=False, help_text='True if LabelVideoSegments have been created from predictions.')),
|
|
567
|
-
('frame_annotations_generated', models.BooleanField(default=False, help_text='True if frame-level annotations have been generated from segments.')),
|
|
568
|
-
('sensitive_meta_processed', models.BooleanField(default=False, help_text='True if the video has been fully processed, meaning a anonymized person was created.')),
|
|
569
|
-
('anonymized', models.BooleanField(default=False, help_text='True if the anonymized video file has been created.')),
|
|
570
|
-
('anonymization_validated', models.BooleanField(default=False, help_text='True if the anonymization process has been validated and confirmed.')),
|
|
571
|
-
('processing_started', models.BooleanField(default=False, help_text='True if the processing has started, but not yet completed.')),
|
|
572
|
-
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
573
|
-
('date_modified', models.DateTimeField(auto_now=True)),
|
|
574
|
-
('segment_annotations_created', models.BooleanField(default=False, help_text='True if segment annotations have been created from LabelVideoSegments.')),
|
|
575
|
-
('segment_annotations_validated', models.BooleanField(default=False, help_text='True if segment annotations have been validated.')),
|
|
576
|
-
('was_created', models.BooleanField(default=True, help_text='True if this state was created for the first time.')),
|
|
577
|
-
],
|
|
578
|
-
options={
|
|
579
|
-
'verbose_name': 'Video Processing State',
|
|
580
|
-
'verbose_name_plural': 'Video Processing States',
|
|
581
|
-
},
|
|
582
|
-
),
|
|
583
|
-
migrations.CreateModel(
|
|
584
|
-
name='Waste',
|
|
585
|
-
fields=[
|
|
586
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
587
|
-
('name', models.CharField(max_length=255)),
|
|
588
|
-
],
|
|
589
|
-
),
|
|
590
|
-
migrations.CreateModel(
|
|
591
|
-
name='CaseTemplateRule',
|
|
592
|
-
fields=[
|
|
593
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
594
|
-
('name', models.CharField(max_length=255)),
|
|
595
|
-
('description', models.TextField(blank=True, null=True)),
|
|
596
|
-
('parent_model', models.CharField(blank=True, max_length=255, null=True)),
|
|
597
|
-
('parent_field', models.CharField(blank=True, max_length=255, null=True)),
|
|
598
|
-
('target_field', models.CharField(blank=True, max_length=255, null=True)),
|
|
599
|
-
('target_model', models.CharField(blank=True, max_length=255, null=True)),
|
|
600
|
-
('rule_values', models.JSONField(blank=True, null=True)),
|
|
601
|
-
('extra_parameters', models.JSONField(blank=True, null=True)),
|
|
602
|
-
('chained_rules', models.ManyToManyField(related_name='calling_rules', to='endoreg_db.casetemplaterule')),
|
|
603
|
-
('rule_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.casetemplateruletype')),
|
|
604
|
-
('value_type', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.casetemplaterulevaluetype')),
|
|
605
|
-
('date_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.datevaluedistribution')),
|
|
606
|
-
('multiple_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.multiplecategoricalvaluedistribution')),
|
|
607
|
-
('numerical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.numericvaluedistribution')),
|
|
608
|
-
('single_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.singlecategoricalvaluedistribution')),
|
|
609
|
-
],
|
|
610
|
-
),
|
|
611
|
-
migrations.CreateModel(
|
|
612
|
-
name='CaseTemplate',
|
|
613
|
-
fields=[
|
|
614
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
615
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
616
|
-
('description', models.TextField(blank=True, null=True)),
|
|
617
|
-
('rules', models.ManyToManyField(to='endoreg_db.casetemplaterule')),
|
|
618
|
-
('secondary_rules', models.ManyToManyField(related_name='secondary_rules', to='endoreg_db.casetemplaterule')),
|
|
619
|
-
('template_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='case_templates', to='endoreg_db.casetemplatetype')),
|
|
620
|
-
],
|
|
621
|
-
),
|
|
622
|
-
migrations.CreateModel(
|
|
623
|
-
name='DiseaseClassification',
|
|
624
|
-
fields=[
|
|
625
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
626
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
627
|
-
('disease', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='disease_classifications', to='endoreg_db.disease')),
|
|
628
|
-
],
|
|
629
|
-
),
|
|
630
|
-
migrations.CreateModel(
|
|
631
|
-
name='DiseaseClassificationChoice',
|
|
632
|
-
fields=[
|
|
633
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
634
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
635
|
-
('disease_classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='disease_classification_choices', to='endoreg_db.diseaseclassification')),
|
|
636
|
-
],
|
|
637
|
-
),
|
|
638
|
-
migrations.CreateModel(
|
|
639
|
-
name='Endoscope',
|
|
640
|
-
fields=[
|
|
641
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
642
|
-
('name', models.CharField(max_length=255)),
|
|
643
|
-
('sn', models.CharField(max_length=255)),
|
|
644
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='endoscopes', to='endoreg_db.center')),
|
|
645
|
-
('endoscope_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='endoscopes', to='endoreg_db.endoscopetype')),
|
|
646
|
-
],
|
|
647
|
-
options={
|
|
648
|
-
'verbose_name': 'Endoscope',
|
|
649
|
-
'verbose_name_plural': 'Endoscopes',
|
|
650
|
-
'ordering': ['name'],
|
|
651
|
-
},
|
|
652
|
-
),
|
|
653
|
-
migrations.CreateModel(
|
|
654
|
-
name='EndoscopyProcessor',
|
|
655
|
-
fields=[
|
|
656
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
657
|
-
('name', models.CharField(max_length=255)),
|
|
658
|
-
('image_width', models.IntegerField()),
|
|
659
|
-
('image_height', models.IntegerField()),
|
|
660
|
-
('endoscope_image_x', models.IntegerField()),
|
|
661
|
-
('endoscope_image_y', models.IntegerField()),
|
|
662
|
-
('endoscope_image_width', models.IntegerField()),
|
|
663
|
-
('endoscope_image_height', models.IntegerField()),
|
|
664
|
-
('examination_date_x', models.IntegerField()),
|
|
665
|
-
('examination_date_y', models.IntegerField()),
|
|
666
|
-
('examination_date_width', models.IntegerField()),
|
|
667
|
-
('examination_date_height', models.IntegerField()),
|
|
668
|
-
('examination_time_x', models.IntegerField(blank=True, null=True)),
|
|
669
|
-
('examination_time_y', models.IntegerField(blank=True, null=True)),
|
|
670
|
-
('examination_time_width', models.IntegerField(blank=True, null=True)),
|
|
671
|
-
('examination_time_height', models.IntegerField(blank=True, null=True)),
|
|
672
|
-
('patient_first_name_x', models.IntegerField()),
|
|
673
|
-
('patient_first_name_y', models.IntegerField()),
|
|
674
|
-
('patient_first_name_width', models.IntegerField()),
|
|
675
|
-
('patient_first_name_height', models.IntegerField()),
|
|
676
|
-
('patient_last_name_x', models.IntegerField()),
|
|
677
|
-
('patient_last_name_y', models.IntegerField()),
|
|
678
|
-
('patient_last_name_width', models.IntegerField()),
|
|
679
|
-
('patient_last_name_height', models.IntegerField()),
|
|
680
|
-
('patient_dob_x', models.IntegerField()),
|
|
681
|
-
('patient_dob_y', models.IntegerField()),
|
|
682
|
-
('patient_dob_width', models.IntegerField()),
|
|
683
|
-
('patient_dob_height', models.IntegerField()),
|
|
684
|
-
('endoscope_type_x', models.IntegerField(blank=True, null=True)),
|
|
685
|
-
('endoscope_type_y', models.IntegerField(blank=True, null=True)),
|
|
686
|
-
('endoscope_type_width', models.IntegerField(blank=True, null=True)),
|
|
687
|
-
('endoscope_type_height', models.IntegerField(blank=True, null=True)),
|
|
688
|
-
('endoscope_sn_x', models.IntegerField(blank=True, null=True)),
|
|
689
|
-
('endoscope_sn_y', models.IntegerField(blank=True, null=True)),
|
|
690
|
-
('endoscope_sn_width', models.IntegerField(blank=True, null=True)),
|
|
691
|
-
('endoscope_sn_height', models.IntegerField(blank=True, null=True)),
|
|
692
|
-
('centers', models.ManyToManyField(blank=True, related_name='endoscopy_processors', to='endoreg_db.center')),
|
|
693
|
-
],
|
|
694
|
-
),
|
|
695
|
-
migrations.CreateModel(
|
|
696
|
-
name='Event',
|
|
697
|
-
fields=[
|
|
698
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
699
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
700
|
-
('description', models.TextField(blank=True, null=True)),
|
|
701
|
-
('event_classification', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='events', to='endoreg_db.eventclassification')),
|
|
702
|
-
],
|
|
703
|
-
),
|
|
704
|
-
migrations.CreateModel(
|
|
705
|
-
name='EventClassificationChoice',
|
|
706
|
-
fields=[
|
|
707
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
708
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
709
|
-
('subcategories', models.JSONField(default=dict)),
|
|
710
|
-
('numerical_descriptors', models.JSONField(default=dict)),
|
|
711
|
-
('event_classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='event_classification_choices', to='endoreg_db.eventclassification')),
|
|
712
|
-
],
|
|
713
|
-
),
|
|
714
|
-
migrations.CreateModel(
|
|
715
|
-
name='ExaminationIndicationClassification',
|
|
716
|
-
fields=[
|
|
717
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
718
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
719
|
-
('description', models.TextField(blank=True, null=True)),
|
|
720
|
-
('examinations', models.ManyToManyField(blank=True, related_name='indication_classifications', to='endoreg_db.examination')),
|
|
721
|
-
],
|
|
722
|
-
),
|
|
723
|
-
migrations.CreateModel(
|
|
724
|
-
name='ExaminationIndicationClassificationChoice',
|
|
725
|
-
fields=[
|
|
726
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
727
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
728
|
-
('subcategories', models.JSONField(default=dict)),
|
|
729
|
-
('numerical_descriptors', models.JSONField(default=dict)),
|
|
730
|
-
('classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='choices', to='endoreg_db.examinationindicationclassification')),
|
|
731
|
-
],
|
|
732
|
-
),
|
|
733
|
-
migrations.CreateModel(
|
|
734
|
-
name='ExaminationRequirementSet',
|
|
735
|
-
fields=[
|
|
736
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
737
|
-
('enabled_by_default', models.BooleanField(default=False)),
|
|
738
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
739
|
-
('examinations', models.ManyToManyField(blank=True, related_name='exam_reqset_links', to='endoreg_db.examination')),
|
|
740
|
-
],
|
|
741
|
-
),
|
|
742
|
-
migrations.CreateModel(
|
|
743
|
-
name='ExaminationTimeType',
|
|
744
|
-
fields=[
|
|
745
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
746
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
747
|
-
('examinations', models.ManyToManyField(blank=True, to='endoreg_db.examination')),
|
|
748
|
-
],
|
|
749
|
-
options={
|
|
750
|
-
'verbose_name': 'Examination Time Type',
|
|
751
|
-
'verbose_name_plural': 'Examination Time Types',
|
|
752
|
-
'ordering': ['name'],
|
|
753
|
-
},
|
|
754
|
-
),
|
|
755
|
-
migrations.CreateModel(
|
|
756
|
-
name='ExaminationTime',
|
|
757
|
-
fields=[
|
|
758
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
759
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
760
|
-
('start_time', models.TimeField(blank=True, null=True)),
|
|
761
|
-
('end_time', models.TimeField(blank=True, null=True)),
|
|
762
|
-
('time_types', models.ManyToManyField(blank=True, to='endoreg_db.examinationtimetype')),
|
|
763
|
-
],
|
|
764
|
-
options={
|
|
765
|
-
'verbose_name': 'Examination Time',
|
|
766
|
-
'verbose_name_plural': 'Examination Times',
|
|
767
|
-
'ordering': ['name'],
|
|
768
|
-
},
|
|
769
|
-
),
|
|
770
|
-
migrations.AddField(
|
|
771
|
-
model_name='examination',
|
|
772
|
-
name='examination_types',
|
|
773
|
-
field=models.ManyToManyField(blank=True, to='endoreg_db.examinationtype'),
|
|
774
|
-
),
|
|
775
|
-
migrations.CreateModel(
|
|
776
|
-
name='Examiner',
|
|
777
|
-
fields=[
|
|
778
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
779
|
-
('first_name', models.CharField(max_length=255)),
|
|
780
|
-
('last_name', models.CharField(max_length=255)),
|
|
781
|
-
('dob', models.DateField(blank=True, null=True, verbose_name='Date of Birth')),
|
|
782
|
-
('email', models.EmailField(blank=True, max_length=255, null=True)),
|
|
783
|
-
('phone', models.CharField(blank=True, max_length=255, null=True)),
|
|
784
|
-
('is_real_person', models.BooleanField(default=True)),
|
|
785
|
-
('hash', models.CharField(max_length=255, unique=True)),
|
|
786
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
787
|
-
('gender', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
|
|
788
|
-
],
|
|
789
|
-
options={
|
|
790
|
-
'abstract': False,
|
|
791
|
-
},
|
|
792
|
-
),
|
|
793
|
-
migrations.CreateModel(
|
|
794
|
-
name='FindingIntervention',
|
|
795
|
-
fields=[
|
|
796
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
797
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
798
|
-
('name_de', models.CharField(max_length=100, null=True, unique=True)),
|
|
799
|
-
('name_en', models.CharField(max_length=100, null=True, unique=True)),
|
|
800
|
-
('description', models.TextField(blank=True, null=True)),
|
|
801
|
-
('description_de', models.TextField(blank=True, null=True)),
|
|
802
|
-
('description_en', models.TextField(blank=True, null=True)),
|
|
803
|
-
('contraindications', models.ManyToManyField(blank=True, related_name='contraindicating_finding_interventions', to='endoreg_db.contraindication')),
|
|
804
|
-
('intervention_types', models.ManyToManyField(blank=True, related_name='interventions', to='endoreg_db.findinginterventiontype')),
|
|
805
|
-
],
|
|
806
|
-
),
|
|
807
|
-
migrations.CreateModel(
|
|
808
|
-
name='Finding',
|
|
809
|
-
fields=[
|
|
810
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
811
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
812
|
-
('name_de', models.CharField(max_length=100, null=True, unique=True)),
|
|
813
|
-
('name_en', models.CharField(max_length=100, null=True, unique=True)),
|
|
814
|
-
('description', models.TextField(blank=True, null=True)),
|
|
815
|
-
('description_de', models.TextField(blank=True, null=True)),
|
|
816
|
-
('description_en', models.TextField(blank=True, null=True)),
|
|
817
|
-
('examinations', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.examination')),
|
|
818
|
-
('finding_interventions', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.findingintervention')),
|
|
819
|
-
('finding_types', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.findingtype')),
|
|
820
|
-
],
|
|
821
|
-
),
|
|
822
|
-
migrations.CreateModel(
|
|
823
|
-
name='ExaminationIndication',
|
|
824
|
-
fields=[
|
|
825
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
826
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
827
|
-
('description', models.TextField(blank=True, null=True)),
|
|
828
|
-
('examinations', models.ManyToManyField(blank=True, related_name='indications', to='endoreg_db.examination')),
|
|
829
|
-
('classifications', models.ManyToManyField(blank=True, related_name='indications', to='endoreg_db.examinationindicationclassification')),
|
|
830
|
-
('expected_interventions', models.ManyToManyField(blank=True, related_name='indications', to='endoreg_db.findingintervention')),
|
|
831
|
-
],
|
|
832
|
-
),
|
|
833
|
-
migrations.CreateModel(
|
|
834
|
-
name='FindingClassification',
|
|
835
|
-
fields=[
|
|
836
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
837
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
838
|
-
('name_de', models.CharField(max_length=255, null=True, unique=True)),
|
|
839
|
-
('name_en', models.CharField(max_length=255, null=True, unique=True)),
|
|
840
|
-
('description', models.TextField(blank=True)),
|
|
841
|
-
('description_de', models.TextField(blank=True, null=True)),
|
|
842
|
-
('description_en', models.TextField(blank=True, null=True)),
|
|
843
|
-
('examinations', models.ManyToManyField(blank=True, related_name='finding_classifications', to='endoreg_db.examination')),
|
|
844
|
-
('findings', models.ManyToManyField(blank=True, related_name='finding_classifications', to='endoreg_db.finding')),
|
|
845
|
-
('choices', models.ManyToManyField(blank=True, related_name='classifications', to='endoreg_db.findingclassificationchoice')),
|
|
846
|
-
('classification_types', models.ManyToManyField(to='endoreg_db.findingclassificationtype')),
|
|
847
|
-
('finding_types', models.ManyToManyField(blank=True, related_name='finding_classifications', to='endoreg_db.findingtype')),
|
|
848
|
-
],
|
|
849
|
-
),
|
|
850
|
-
migrations.AddField(
|
|
851
|
-
model_name='center',
|
|
852
|
-
name='first_names',
|
|
853
|
-
field=models.ManyToManyField(related_name='centers', to='endoreg_db.firstname'),
|
|
854
|
-
),
|
|
855
|
-
migrations.CreateModel(
|
|
856
|
-
name='Employee',
|
|
857
|
-
fields=[
|
|
858
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
859
|
-
('first_name', models.CharField(max_length=255)),
|
|
860
|
-
('last_name', models.CharField(max_length=255)),
|
|
861
|
-
('dob', models.DateField(blank=True, null=True, verbose_name='Date of Birth')),
|
|
862
|
-
('email', models.EmailField(blank=True, max_length=255, null=True)),
|
|
863
|
-
('phone', models.CharField(blank=True, max_length=255, null=True)),
|
|
864
|
-
('is_real_person', models.BooleanField(default=True)),
|
|
865
|
-
('employee_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='employees', to='endoreg_db.employeetype')),
|
|
866
|
-
('gender', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
|
|
867
|
-
],
|
|
868
|
-
options={
|
|
869
|
-
'abstract': False,
|
|
870
|
-
},
|
|
871
|
-
),
|
|
872
|
-
migrations.CreateModel(
|
|
873
|
-
name='InformationSource',
|
|
874
|
-
fields=[
|
|
875
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
876
|
-
('name', models.CharField(max_length=100)),
|
|
877
|
-
('url', models.URLField(blank=True, null=True)),
|
|
878
|
-
('description', models.TextField(blank=True, null=True)),
|
|
879
|
-
('date', models.DateField(blank=True, null=True)),
|
|
880
|
-
('date_created', models.DateField(auto_now_add=True)),
|
|
881
|
-
('date_modified', models.DateField(auto_now=True)),
|
|
882
|
-
('abbreviation', models.CharField(blank=True, max_length=100, null=True, unique=True)),
|
|
883
|
-
],
|
|
884
|
-
options={
|
|
885
|
-
'verbose_name': 'Information Source',
|
|
886
|
-
'verbose_name_plural': 'Information Sources',
|
|
887
|
-
'indexes': [models.Index(fields=['name'], name='endoreg_db__name_febac5_idx'), models.Index(fields=['abbreviation'], name='endoreg_db__abbrevi_5a07c4_idx')],
|
|
888
|
-
},
|
|
889
|
-
),
|
|
890
|
-
migrations.CreateModel(
|
|
891
|
-
name='InformationSourceType',
|
|
892
|
-
fields=[
|
|
893
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
894
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
895
|
-
('description', models.TextField(blank=True, null=True)),
|
|
896
|
-
('information_sources', models.ManyToManyField(blank=True, related_name='information_source_types', to='endoreg_db.informationsource')),
|
|
897
|
-
],
|
|
898
|
-
options={
|
|
899
|
-
'verbose_name': 'Information Source Type',
|
|
900
|
-
'verbose_name_plural': 'Information Source Types',
|
|
901
|
-
},
|
|
902
|
-
),
|
|
903
|
-
migrations.CreateModel(
|
|
904
|
-
name='LabelSet',
|
|
905
|
-
fields=[
|
|
906
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
907
|
-
('name', models.CharField(max_length=255)),
|
|
908
|
-
('description', models.TextField(blank=True, null=True)),
|
|
909
|
-
('version', models.IntegerField()),
|
|
910
|
-
('labels', models.ManyToManyField(related_name='label_sets', to='endoreg_db.label')),
|
|
911
|
-
],
|
|
912
|
-
),
|
|
913
|
-
migrations.AddField(
|
|
914
|
-
model_name='label',
|
|
915
|
-
name='label_type',
|
|
916
|
-
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='labels', to='endoreg_db.labeltype'),
|
|
917
|
-
),
|
|
918
|
-
migrations.CreateModel(
|
|
919
|
-
name='LabelVideoSegment',
|
|
920
|
-
fields=[
|
|
921
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
922
|
-
('start_frame_number', models.IntegerField()),
|
|
923
|
-
('end_frame_number', models.IntegerField()),
|
|
924
|
-
('label', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.label')),
|
|
925
|
-
('source', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.informationsource')),
|
|
926
|
-
],
|
|
927
|
-
),
|
|
928
|
-
migrations.CreateModel(
|
|
929
|
-
name='LabelVideoSegmentState',
|
|
930
|
-
fields=[
|
|
931
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
932
|
-
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
933
|
-
('updated_at', models.DateTimeField(auto_now=True)),
|
|
934
|
-
('prediction', models.BooleanField(default=False)),
|
|
935
|
-
('annotation', models.BooleanField(default=False)),
|
|
936
|
-
('frames_extracted', models.BooleanField(default=False)),
|
|
937
|
-
('is_validated', models.BooleanField(default=False)),
|
|
938
|
-
('origin', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='state', to='endoreg_db.labelvideosegment')),
|
|
939
|
-
],
|
|
940
|
-
options={
|
|
941
|
-
'verbose_name': 'Label Video Segment State',
|
|
942
|
-
'verbose_name_plural': 'Label Video Segment States',
|
|
943
|
-
},
|
|
944
|
-
),
|
|
945
|
-
migrations.CreateModel(
|
|
946
|
-
name='LabValue',
|
|
947
|
-
fields=[
|
|
948
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
949
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
950
|
-
('abbreviation', models.CharField(blank=True, max_length=10, null=True)),
|
|
951
|
-
('numeric_precision', models.IntegerField(default=3)),
|
|
952
|
-
('default_normal_range', models.JSONField(blank=True, null=True)),
|
|
953
|
-
('normal_range_age_dependent', models.BooleanField(default=False)),
|
|
954
|
-
('normal_range_gender_dependent', models.BooleanField(default=False)),
|
|
955
|
-
('normal_range_special_case', models.BooleanField(default=False)),
|
|
956
|
-
('bound_adjustment_factor', models.FloatField(default=0.1, help_text='Factor for adjusting bounds when generating increased/decreased values, e.g., 0.1 for 10%.')),
|
|
957
|
-
('default_date_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_date_value_distribution', to='endoreg_db.datevaluedistribution')),
|
|
958
|
-
('default_multiple_categorical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_multiple_categorical_value_distribution', to='endoreg_db.multiplecategoricalvaluedistribution')),
|
|
959
|
-
('default_numerical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_numerical_value_distribution', to='endoreg_db.numericvaluedistribution')),
|
|
960
|
-
('default_single_categorical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_single_categorical_value_distribution', to='endoreg_db.singlecategoricalvaluedistribution')),
|
|
961
|
-
('default_unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
962
|
-
],
|
|
963
|
-
),
|
|
964
|
-
migrations.AddField(
|
|
965
|
-
model_name='findingintervention',
|
|
966
|
-
name='required_lab_values',
|
|
967
|
-
field=models.ManyToManyField(blank=True, related_name='required_by_finding_interventions', to='endoreg_db.labvalue'),
|
|
968
|
-
),
|
|
969
|
-
migrations.AddField(
|
|
970
|
-
model_name='center',
|
|
971
|
-
name='last_names',
|
|
972
|
-
field=models.ManyToManyField(related_name='centers', to='endoreg_db.lastname'),
|
|
973
|
-
),
|
|
974
|
-
migrations.CreateModel(
|
|
975
|
-
name='Material',
|
|
976
|
-
fields=[
|
|
977
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
978
|
-
('name', models.CharField(max_length=255)),
|
|
979
|
-
('emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
980
|
-
],
|
|
981
|
-
),
|
|
982
|
-
migrations.CreateModel(
|
|
983
|
-
name='MedicationSchedule',
|
|
984
|
-
fields=[
|
|
985
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
986
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
987
|
-
('description', models.TextField(blank=True, null=True)),
|
|
988
|
-
('therapy_duration_d', models.FloatField(blank=True, null=True)),
|
|
989
|
-
('dose', models.FloatField()),
|
|
990
|
-
('intake_times', models.ManyToManyField(to='endoreg_db.medicationintaketime')),
|
|
991
|
-
('medication', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.medication')),
|
|
992
|
-
('unit', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
993
|
-
],
|
|
994
|
-
),
|
|
995
|
-
migrations.CreateModel(
|
|
996
|
-
name='MedicationIndication',
|
|
997
|
-
fields=[
|
|
998
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
999
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
1000
|
-
('disease_classification_choices', models.ManyToManyField(to='endoreg_db.diseaseclassificationchoice')),
|
|
1001
|
-
('diseases', models.ManyToManyField(to='endoreg_db.disease')),
|
|
1002
|
-
('events', models.ManyToManyField(to='endoreg_db.event')),
|
|
1003
|
-
('sources', models.ManyToManyField(to='endoreg_db.informationsource')),
|
|
1004
|
-
('indication_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='medication_indications', to='endoreg_db.medicationindicationtype')),
|
|
1005
|
-
('medication_schedules', models.ManyToManyField(to='endoreg_db.medicationschedule')),
|
|
1006
|
-
],
|
|
1007
|
-
),
|
|
1008
|
-
migrations.CreateModel(
|
|
1009
|
-
name='ModelMeta',
|
|
1010
|
-
fields=[
|
|
1011
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1012
|
-
('name', models.CharField(help_text="User-defined name for this specific model metadata set (e.g., 'segmentation_base').", max_length=255)),
|
|
1013
|
-
('version', models.CharField(help_text="Version identifier for this metadata set (e.g., '1', '2a').", max_length=255)),
|
|
1014
|
-
('activation', models.CharField(default='sigmoid', help_text="Output activation function (e.g., 'sigmoid', 'softmax', 'none').", max_length=50)),
|
|
1015
|
-
('weights', models.FileField(blank=True, help_text='Path to the model weights file (.ckpt), relative to MEDIA_ROOT.', null=True, upload_to='model_weights', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['ckpt'])])),
|
|
1016
|
-
('mean', models.CharField(default='0.45211223,0.27139644,0.19264949', help_text='Comma-separated mean values for input normalization.', max_length=255)),
|
|
1017
|
-
('std', models.CharField(default='0.31418097,0.21088019,0.16059452', help_text='Comma-separated standard deviation values for input normalization.', max_length=255)),
|
|
1018
|
-
('size_x', models.IntegerField(default=716, help_text='Expected input image width.')),
|
|
1019
|
-
('size_y', models.IntegerField(default=716, help_text='Expected input image height.')),
|
|
1020
|
-
('axes', models.CharField(default='2,0,1', help_text="Comma-separated target axis order (e.g., '2,0,1' for CHW).", max_length=10)),
|
|
1021
|
-
('batchsize', models.IntegerField(default=16, help_text='Default batch size for inference.')),
|
|
1022
|
-
('num_workers', models.IntegerField(default=0, help_text='Default number of workers for data loading.')),
|
|
1023
|
-
('description', models.TextField(blank=True, help_text='Optional description.', null=True)),
|
|
1024
|
-
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1025
|
-
('labelset', models.ForeignKey(help_text='The set of labels this model version predicts.', on_delete=django.db.models.deletion.CASCADE, related_name='model_metadata', to='endoreg_db.labelset')),
|
|
1026
|
-
('model', models.ForeignKey(help_text='The base AI model architecture this metadata belongs to.', on_delete=django.db.models.deletion.CASCADE, related_name='metadata_versions', to='endoreg_db.aimodel')),
|
|
1027
|
-
],
|
|
1028
|
-
),
|
|
1029
|
-
migrations.AddField(
|
|
1030
|
-
model_name='aimodel',
|
|
1031
|
-
name='active_meta',
|
|
1032
|
-
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='active_model', to='endoreg_db.modelmeta'),
|
|
1033
|
-
),
|
|
1034
|
-
migrations.CreateModel(
|
|
1035
|
-
name='ActiveModel',
|
|
1036
|
-
fields=[
|
|
1037
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1038
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
1039
|
-
('model_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.modelmeta')),
|
|
1040
|
-
],
|
|
1041
|
-
),
|
|
1042
|
-
migrations.AddField(
|
|
1043
|
-
model_name='aimodel',
|
|
1044
|
-
name='model_type',
|
|
1045
|
-
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='ai_models', to='endoreg_db.modeltype'),
|
|
1046
|
-
),
|
|
1047
|
-
migrations.CreateModel(
|
|
1048
|
-
name='Organ',
|
|
1049
|
-
fields=[
|
|
1050
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1051
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
1052
|
-
('description', models.TextField(blank=True, null=True)),
|
|
1053
|
-
('location_choices', models.ManyToManyField(blank=True, related_name='organs', to='endoreg_db.findingclassificationchoice')),
|
|
1054
|
-
],
|
|
1055
|
-
),
|
|
1056
|
-
migrations.CreateModel(
|
|
1057
|
-
name='Patient',
|
|
1058
|
-
fields=[
|
|
1059
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1060
|
-
('email', models.EmailField(blank=True, max_length=255, null=True)),
|
|
1061
|
-
('phone', models.CharField(blank=True, max_length=255, null=True)),
|
|
1062
|
-
('is_real_person', models.BooleanField(default=True)),
|
|
1063
|
-
('first_name', models.CharField(max_length=100)),
|
|
1064
|
-
('last_name', models.CharField(max_length=100)),
|
|
1065
|
-
('dob', models.DateField(blank=True, null=True)),
|
|
1066
|
-
('patient_hash', models.CharField(blank=True, max_length=255, null=True)),
|
|
1067
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
|
|
1068
|
-
('gender', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
|
|
1069
|
-
],
|
|
1070
|
-
options={
|
|
1071
|
-
'abstract': False,
|
|
1072
|
-
},
|
|
1073
|
-
),
|
|
1074
|
-
migrations.CreateModel(
|
|
1075
|
-
name='PatientDisease',
|
|
1076
|
-
fields=[
|
|
1077
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1078
|
-
('start_date', models.DateField(blank=True, null=True)),
|
|
1079
|
-
('end_date', models.DateField(blank=True, null=True)),
|
|
1080
|
-
('numerical_descriptors', models.JSONField(default=dict)),
|
|
1081
|
-
('subcategories', models.JSONField(default=dict)),
|
|
1082
|
-
('last_update', models.DateTimeField(auto_now=True)),
|
|
1083
|
-
('classification_choices', models.ManyToManyField(to='endoreg_db.diseaseclassificationchoice')),
|
|
1084
|
-
('disease', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_diseases', to='endoreg_db.disease')),
|
|
1085
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='diseases', to='endoreg_db.patient')),
|
|
1086
|
-
],
|
|
1087
|
-
options={
|
|
1088
|
-
'verbose_name': 'Patient Disease',
|
|
1089
|
-
'verbose_name_plural': 'Patient Diseases',
|
|
1090
|
-
},
|
|
1091
|
-
),
|
|
1092
|
-
migrations.CreateModel(
|
|
1093
|
-
name='PatientEvent',
|
|
1094
|
-
fields=[
|
|
1095
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1096
|
-
('date_start', models.DateField()),
|
|
1097
|
-
('date_end', models.DateField(blank=True, null=True)),
|
|
1098
|
-
('description', models.TextField(blank=True, null=True)),
|
|
1099
|
-
('subcategories', models.JSONField(default=dict)),
|
|
1100
|
-
('numerical_descriptors', models.JSONField(default=dict)),
|
|
1101
|
-
('last_update', models.DateTimeField(auto_now=True)),
|
|
1102
|
-
('classification_choice', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.eventclassificationchoice')),
|
|
1103
|
-
('event', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_events', to='endoreg_db.event')),
|
|
1104
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='events', to='endoreg_db.patient')),
|
|
1105
|
-
],
|
|
1106
|
-
),
|
|
1107
|
-
migrations.CreateModel(
|
|
1108
|
-
name='PatientExamination',
|
|
1109
|
-
fields=[
|
|
1110
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1111
|
-
('date_start', models.DateField(blank=True, null=True)),
|
|
1112
|
-
('date_end', models.DateField(blank=True, null=True)),
|
|
1113
|
-
('hash', models.CharField(max_length=255, unique=True)),
|
|
1114
|
-
('examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examination')),
|
|
1115
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_examinations', to='endoreg_db.patient')),
|
|
1116
|
-
],
|
|
1117
|
-
options={
|
|
1118
|
-
'verbose_name': 'Patient Examination',
|
|
1119
|
-
'verbose_name_plural': 'Patient Examinations',
|
|
1120
|
-
'ordering': ['patient', 'examination', 'date_start'],
|
|
1121
|
-
},
|
|
1122
|
-
),
|
|
1123
|
-
migrations.CreateModel(
|
|
1124
|
-
name='Case',
|
|
1125
|
-
fields=[
|
|
1126
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1127
|
-
('hash', models.CharField(blank=True, help_text='An optional hash value associated with the case.', max_length=255, null=True)),
|
|
1128
|
-
('start_date', models.DateTimeField(db_index=True, help_text='The start date and time of the case.')),
|
|
1129
|
-
('end_date', models.DateTimeField(blank=True, help_text='The end date and time of the case (optional).', null=True)),
|
|
1130
|
-
('is_active', models.BooleanField(db_index=True, default=True, help_text='Flag indicating if the case is currently active.')),
|
|
1131
|
-
('is_closed', models.BooleanField(db_index=True, default=False, help_text='Flag indicating if the case has been closed.')),
|
|
1132
|
-
('is_deleted', models.BooleanField(db_index=True, default=False, help_text='Flag indicating if the case is marked as deleted.')),
|
|
1133
|
-
('created_at', models.DateTimeField(auto_now_add=True, help_text='The date and time the case was created.')),
|
|
1134
|
-
('updated_at', models.DateTimeField(auto_now=True, help_text='The date and time the case was last updated.')),
|
|
1135
|
-
('patient', models.ForeignKey(help_text='The patient associated with this case.', on_delete=django.db.models.deletion.CASCADE, related_name='cases', to='endoreg_db.patient')),
|
|
1136
|
-
('patient_examinations', models.ManyToManyField(help_text='The examinations included in this case.', related_name='cases', to='endoreg_db.patientexamination')),
|
|
1137
|
-
],
|
|
1138
|
-
options={
|
|
1139
|
-
'verbose_name': 'Case',
|
|
1140
|
-
'verbose_name_plural': 'Cases',
|
|
1141
|
-
'ordering': ['-start_date', 'patient'],
|
|
1142
|
-
},
|
|
1143
|
-
),
|
|
1144
|
-
migrations.CreateModel(
|
|
1145
|
-
name='AnonymExaminationReport',
|
|
1146
|
-
fields=[
|
|
1147
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1148
|
-
('meta', models.JSONField(blank=True, null=True)),
|
|
1149
|
-
('text', models.TextField(blank=True, null=True)),
|
|
1150
|
-
('date', models.DateField(blank=True, null=True)),
|
|
1151
|
-
('time', models.TimeField(blank=True, null=True)),
|
|
1152
|
-
('file', models.FileField(blank=True, null=True, upload_to=pathlib.PurePosixPath('pdfs'))),
|
|
1153
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
|
|
1154
|
-
('type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.documenttype')),
|
|
1155
|
-
('examiners', models.ManyToManyField(blank=True, to='endoreg_db.examiner')),
|
|
1156
|
-
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.DO_NOTHING, to='endoreg_db.patient')),
|
|
1157
|
-
('patient_examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.patientexamination')),
|
|
1158
|
-
],
|
|
1159
|
-
options={
|
|
1160
|
-
'abstract': False,
|
|
1161
|
-
},
|
|
1162
|
-
),
|
|
1163
|
-
migrations.CreateModel(
|
|
1164
|
-
name='PatientExaminationIndication',
|
|
1165
|
-
fields=[
|
|
1166
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1167
|
-
('examination_indication', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examinationindication')),
|
|
1168
|
-
('indication_choice', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examinationindicationclassificationchoice')),
|
|
1169
|
-
('patient_examination', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='indications', to='endoreg_db.patientexamination')),
|
|
1170
|
-
],
|
|
1171
|
-
),
|
|
1172
|
-
migrations.CreateModel(
|
|
1173
|
-
name='PatientFinding',
|
|
1174
|
-
fields=[
|
|
1175
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1176
|
-
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
1177
|
-
('updated_at', models.DateTimeField(auto_now=True)),
|
|
1178
|
-
('is_active', models.BooleanField(default=True, help_text='Deaktiviert statt gelöscht für Audit-Trail')),
|
|
1179
|
-
('deactivated_at', models.DateTimeField(blank=True, null=True)),
|
|
1180
|
-
('created_by', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.PROTECT, related_name='created_findings', to=settings.AUTH_USER_MODEL)),
|
|
1181
|
-
('deactivated_by', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.PROTECT, related_name='deactivated_findings', to=settings.AUTH_USER_MODEL)),
|
|
1182
|
-
('finding', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='finding_patient_findings', to='endoreg_db.finding')),
|
|
1183
|
-
('patient_examination', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_findings', to='endoreg_db.patientexamination')),
|
|
1184
|
-
('updated_by', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.PROTECT, related_name='updated_findings', to=settings.AUTH_USER_MODEL)),
|
|
1185
|
-
],
|
|
1186
|
-
options={
|
|
1187
|
-
'verbose_name': 'Patient Finding',
|
|
1188
|
-
'verbose_name_plural': 'Patient Findings',
|
|
1189
|
-
'ordering': ['patient_examination', 'finding'],
|
|
1190
|
-
},
|
|
1191
|
-
),
|
|
1192
|
-
migrations.AddField(
|
|
1193
|
-
model_name='labelvideosegment',
|
|
1194
|
-
name='patient_findings',
|
|
1195
|
-
field=models.ManyToManyField(blank=True, related_name='video_segments', to='endoreg_db.patientfinding'),
|
|
1196
|
-
),
|
|
1197
|
-
migrations.CreateModel(
|
|
1198
|
-
name='PatientFindingClassification',
|
|
1199
|
-
fields=[
|
|
1200
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1201
|
-
('is_active', models.BooleanField(default=True, help_text='Indicates if the classification is currently active.')),
|
|
1202
|
-
('subcategories', models.JSONField(blank=True, null=True)),
|
|
1203
|
-
('numerical_descriptors', models.JSONField(blank=True, null=True)),
|
|
1204
|
-
('classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_finding_classifications', to='endoreg_db.findingclassification')),
|
|
1205
|
-
('classification_choice', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_finding_classifications', to='endoreg_db.findingclassificationchoice')),
|
|
1206
|
-
('finding', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='classifications', to='endoreg_db.patientfinding')),
|
|
1207
|
-
],
|
|
1208
|
-
options={
|
|
1209
|
-
'verbose_name': 'Patient Finding Classification',
|
|
1210
|
-
'verbose_name_plural': 'Patient Finding Classifications',
|
|
1211
|
-
'ordering': ['finding', 'classification', 'classification_choice'],
|
|
1212
|
-
},
|
|
1213
|
-
),
|
|
1214
|
-
migrations.CreateModel(
|
|
1215
|
-
name='PatientFindingIntervention',
|
|
1216
|
-
fields=[
|
|
1217
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1218
|
-
('is_active', models.BooleanField(default=True, help_text='Indicates if the intervention is currently active.')),
|
|
1219
|
-
('state', models.CharField(blank=True, max_length=100, null=True)),
|
|
1220
|
-
('time_start', models.DateTimeField(blank=True, null=True)),
|
|
1221
|
-
('time_end', models.DateTimeField(blank=True, null=True)),
|
|
1222
|
-
('date', models.DateField(blank=True, null=True)),
|
|
1223
|
-
('finding', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='interventions', to='endoreg_db.patientfinding')),
|
|
1224
|
-
('intervention', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_finding_interventions', to='endoreg_db.findingintervention')),
|
|
1225
|
-
],
|
|
1226
|
-
),
|
|
1227
|
-
migrations.CreateModel(
|
|
1228
|
-
name='PatientLabSample',
|
|
1229
|
-
fields=[
|
|
1230
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1231
|
-
('date', models.DateTimeField()),
|
|
1232
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='lab_samples', to='endoreg_db.patient')),
|
|
1233
|
-
('sample_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patientlabsampletype')),
|
|
1234
|
-
],
|
|
1235
|
-
),
|
|
1236
|
-
migrations.CreateModel(
|
|
1237
|
-
name='PatientMedication',
|
|
1238
|
-
fields=[
|
|
1239
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1240
|
-
('dosage', models.JSONField(blank=True, null=True)),
|
|
1241
|
-
('active', models.BooleanField(default=True)),
|
|
1242
|
-
('intake_times', models.ManyToManyField(blank=True, related_name='intake_time_patient_medications', to='endoreg_db.medicationintaketime')),
|
|
1243
|
-
('medication', models.ForeignKey(blank=True, on_delete=django.db.models.deletion.CASCADE, related_name='medication_patient_medications', to='endoreg_db.medication')),
|
|
1244
|
-
('medication_indication', models.ForeignKey(null=True, on_delete=django.db.models.deletion.CASCADE, related_name='indication_patient_medications', to='endoreg_db.medicationindication')),
|
|
1245
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1246
|
-
('unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
1247
|
-
],
|
|
1248
|
-
options={
|
|
1249
|
-
'verbose_name': 'Patient Medication',
|
|
1250
|
-
'verbose_name_plural': 'Patient Medications',
|
|
1251
|
-
},
|
|
1252
|
-
),
|
|
1253
|
-
migrations.CreateModel(
|
|
1254
|
-
name='PatientMedicationSchedule',
|
|
1255
|
-
fields=[
|
|
1256
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1257
|
-
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
1258
|
-
('updated_at', models.DateTimeField(auto_now=True)),
|
|
1259
|
-
('medication', models.ManyToManyField(blank=True, related_name='patient_medication_schedules', to='endoreg_db.patientmedication')),
|
|
1260
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1261
|
-
],
|
|
1262
|
-
),
|
|
1263
|
-
migrations.CreateModel(
|
|
1264
|
-
name='PdfMeta',
|
|
1265
|
-
fields=[
|
|
1266
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1267
|
-
('date', models.DateField()),
|
|
1268
|
-
('time', models.TimeField()),
|
|
1269
|
-
('pdf_hash', models.CharField(max_length=255, unique=True)),
|
|
1270
|
-
('pdf_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.pdftype')),
|
|
1271
|
-
],
|
|
1272
|
-
),
|
|
1273
|
-
migrations.CreateModel(
|
|
1274
|
-
name='CenterProduct',
|
|
1275
|
-
fields=[
|
|
1276
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1277
|
-
('date_used', models.DateField()),
|
|
1278
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_products', to='endoreg_db.center')),
|
|
1279
|
-
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_products', to='endoreg_db.product')),
|
|
1280
|
-
],
|
|
1281
|
-
options={
|
|
1282
|
-
'verbose_name': 'Center Product Usage',
|
|
1283
|
-
'verbose_name_plural': 'Center Product Usages',
|
|
1284
|
-
'ordering': ['center', '-date_used', 'product'],
|
|
1285
|
-
},
|
|
1286
|
-
),
|
|
1287
|
-
migrations.AddField(
|
|
1288
|
-
model_name='product',
|
|
1289
|
-
name='product_group',
|
|
1290
|
-
field=models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='products', to='endoreg_db.productgroup'),
|
|
1291
|
-
),
|
|
1292
|
-
migrations.CreateModel(
|
|
1293
|
-
name='PortalUserInfo',
|
|
1294
|
-
fields=[
|
|
1295
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1296
|
-
('works_in_endoscopy', models.BooleanField(blank=True, null=True)),
|
|
1297
|
-
('examiner', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='portal_user_info', to='endoreg_db.examiner')),
|
|
1298
|
-
('user', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)),
|
|
1299
|
-
('profession', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='portal_user_infos', to='endoreg_db.profession')),
|
|
1300
|
-
],
|
|
1301
|
-
),
|
|
1302
|
-
migrations.AddField(
|
|
1303
|
-
model_name='employeetype',
|
|
1304
|
-
name='qualifications',
|
|
1305
|
-
field=models.ManyToManyField(related_name='employee_types', to='endoreg_db.qualification'),
|
|
1306
|
-
),
|
|
1307
|
-
migrations.CreateModel(
|
|
1308
|
-
name='EmployeeQualification',
|
|
1309
|
-
fields=[
|
|
1310
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1311
|
-
('employee', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='qualification', to='endoreg_db.employee')),
|
|
1312
|
-
('qualifications', models.ManyToManyField(related_name='employee_qualifications', to='endoreg_db.qualification')),
|
|
1313
|
-
],
|
|
1314
|
-
),
|
|
1315
|
-
migrations.AddField(
|
|
1316
|
-
model_name='qualification',
|
|
1317
|
-
name='qualification_types',
|
|
1318
|
-
field=models.ManyToManyField(related_name='qualifications', to='endoreg_db.qualificationtype'),
|
|
1319
|
-
),
|
|
1320
|
-
migrations.CreateModel(
|
|
1321
|
-
name='ReferenceProduct',
|
|
1322
|
-
fields=[
|
|
1323
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1324
|
-
('name', models.CharField(max_length=255)),
|
|
1325
|
-
('emission_factor_package', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='reference_product_package', to='endoreg_db.emissionfactor')),
|
|
1326
|
-
('emission_factor_product', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='reference_product_product', to='endoreg_db.emissionfactor')),
|
|
1327
|
-
('emission_factor_total', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='reference_products', to='endoreg_db.emissionfactor')),
|
|
1328
|
-
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='reference_products', to='endoreg_db.product')),
|
|
1329
|
-
('product_group', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='reference_product', to='endoreg_db.productgroup')),
|
|
1330
|
-
],
|
|
1331
|
-
),
|
|
1332
|
-
migrations.CreateModel(
|
|
1333
|
-
name='ReportReaderConfig',
|
|
1334
|
-
fields=[
|
|
1335
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1336
|
-
('locale', models.CharField(default='de_DE', max_length=10)),
|
|
1337
|
-
('text_date_format', models.CharField(default='%d.%m.%Y', max_length=10)),
|
|
1338
|
-
('first_names', models.ManyToManyField(related_name='report_reader_configs', to='endoreg_db.firstname')),
|
|
1339
|
-
('last_names', models.ManyToManyField(related_name='report_reader_configs', to='endoreg_db.lastname')),
|
|
1340
|
-
('cut_off_above', models.ManyToManyField(related_name='report_reader_configs_cut_off_above', to='endoreg_db.reportreaderflag')),
|
|
1341
|
-
('cut_off_below', models.ManyToManyField(related_name='report_reader_configs_cut_off_below', to='endoreg_db.reportreaderflag')),
|
|
1342
|
-
('endoscope_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_endoscope_info_line', to='endoreg_db.reportreaderflag')),
|
|
1343
|
-
('examiner_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_examiner_info_line', to='endoreg_db.reportreaderflag')),
|
|
1344
|
-
('patient_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_patient_info_line', to='endoreg_db.reportreaderflag')),
|
|
1345
|
-
],
|
|
1346
|
-
),
|
|
1347
|
-
migrations.AddField(
|
|
1348
|
-
model_name='pdftype',
|
|
1349
|
-
name='cut_off_above_lines',
|
|
1350
|
-
field=models.ManyToManyField(related_name='pdf_type_cut_off_above_lines', to='endoreg_db.reportreaderflag'),
|
|
1351
|
-
),
|
|
1352
|
-
migrations.AddField(
|
|
1353
|
-
model_name='pdftype',
|
|
1354
|
-
name='cut_off_below_lines',
|
|
1355
|
-
field=models.ManyToManyField(related_name='pdf_type_cut_off_below_lines', to='endoreg_db.reportreaderflag'),
|
|
1356
|
-
),
|
|
1357
|
-
migrations.AddField(
|
|
1358
|
-
model_name='pdftype',
|
|
1359
|
-
name='endoscope_info_line',
|
|
1360
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='pdf_type_endoscopy_info_line', to='endoreg_db.reportreaderflag'),
|
|
1361
|
-
),
|
|
1362
|
-
migrations.AddField(
|
|
1363
|
-
model_name='pdftype',
|
|
1364
|
-
name='examiner_info_line',
|
|
1365
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='pdf_type_examiner_info_line', to='endoreg_db.reportreaderflag'),
|
|
1366
|
-
),
|
|
1367
|
-
migrations.AddField(
|
|
1368
|
-
model_name='pdftype',
|
|
1369
|
-
name='patient_info_line',
|
|
1370
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='pdf_type_patient_info_line', to='endoreg_db.reportreaderflag'),
|
|
1371
|
-
),
|
|
1372
|
-
migrations.CreateModel(
|
|
1373
|
-
name='Requirement',
|
|
1374
|
-
fields=[
|
|
1375
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1376
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
1377
|
-
('description', models.TextField(blank=True, null=True)),
|
|
1378
|
-
('numeric_value', models.FloatField(blank=True, help_text='Numeric value for the requirement. If not set, the requirement is not used in calculations.', null=True)),
|
|
1379
|
-
('numeric_value_min', models.FloatField(blank=True, help_text='Minimum numeric value for the requirement. If not set, the requirement is not used in calculations.', null=True)),
|
|
1380
|
-
('numeric_value_max', models.FloatField(blank=True, help_text='Maximum numeric value for the requirement. If not set, the requirement is not used in calculations.', null=True)),
|
|
1381
|
-
('string_value', models.CharField(blank=True, help_text='String value for the requirement. If not set, the requirement is not used in calculations.', max_length=100, null=True)),
|
|
1382
|
-
('string_values', models.TextField(blank=True, help_text=" ','-separated list of string values for the requirement.If not set, the requirement is not used in calculations.", null=True)),
|
|
1383
|
-
('disease_classification_choices', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.diseaseclassificationchoice')),
|
|
1384
|
-
('diseases', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.disease')),
|
|
1385
|
-
('events', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.event')),
|
|
1386
|
-
('examination_indications', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.examinationindication')),
|
|
1387
|
-
('examinations', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.examination')),
|
|
1388
|
-
('finding_classification_choices', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.findingclassificationchoice')),
|
|
1389
|
-
('finding_classifications', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.findingclassification')),
|
|
1390
|
-
('finding_interventions', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.findingintervention')),
|
|
1391
|
-
('findings', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.finding')),
|
|
1392
|
-
('genders', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.gender')),
|
|
1393
|
-
('lab_values', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.labvalue')),
|
|
1394
|
-
('medication_indications', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.medicationindication')),
|
|
1395
|
-
('medication_intake_times', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.medicationintaketime')),
|
|
1396
|
-
('medication_schedules', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.medicationschedule')),
|
|
1397
|
-
('medications', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.medication')),
|
|
1398
|
-
('operators', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.requirementoperator')),
|
|
1399
|
-
('requirement_types', models.ManyToManyField(blank=True, related_name='linked_requirements', to='endoreg_db.requirementtype')),
|
|
1400
|
-
('unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='required_in', to='endoreg_db.unit')),
|
|
1401
|
-
],
|
|
1402
|
-
),
|
|
1403
|
-
migrations.CreateModel(
|
|
1404
|
-
name='Risk',
|
|
1405
|
-
fields=[
|
|
1406
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1407
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
1408
|
-
('name_de', models.CharField(blank=True, max_length=100, null=True)),
|
|
1409
|
-
('name_en', models.CharField(blank=True, max_length=100, null=True)),
|
|
1410
|
-
('description', models.TextField(blank=True, null=True)),
|
|
1411
|
-
('risk_value', models.FloatField(blank=True, help_text='Risk value for the risk. If not set, the risk is not used in calculations.', null=True)),
|
|
1412
|
-
('risk_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='risks', to='endoreg_db.risktype')),
|
|
1413
|
-
],
|
|
1414
|
-
),
|
|
1415
|
-
migrations.CreateModel(
|
|
1416
|
-
name='Rule',
|
|
1417
|
-
fields=[
|
|
1418
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1419
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
1420
|
-
('description', models.TextField(blank=True, null=True)),
|
|
1421
|
-
('attribute_key', models.CharField(max_length=255)),
|
|
1422
|
-
('attribute_dtype', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruleattributedtype')),
|
|
1423
|
-
('rule_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruletype')),
|
|
1424
|
-
],
|
|
1425
|
-
options={
|
|
1426
|
-
'verbose_name': 'Rule',
|
|
1427
|
-
'verbose_name_plural': 'Rules',
|
|
1428
|
-
},
|
|
1429
|
-
),
|
|
1430
|
-
migrations.CreateModel(
|
|
1431
|
-
name='Ruleset',
|
|
1432
|
-
fields=[
|
|
1433
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1434
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
1435
|
-
('rules', models.ManyToManyField(to='endoreg_db.rule')),
|
|
1436
|
-
],
|
|
1437
|
-
),
|
|
1438
|
-
migrations.CreateModel(
|
|
1439
|
-
name='SensitiveMeta',
|
|
1440
|
-
fields=[
|
|
1441
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1442
|
-
('examination_date', models.DateField(blank=True, null=True)),
|
|
1443
|
-
('patient_first_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
1444
|
-
('patient_last_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
1445
|
-
('patient_dob', models.DateTimeField(blank=True, help_text='Date of birth (can be auto-generated if missing).', null=True)),
|
|
1446
|
-
('examiner_first_name', models.CharField(blank=True, editable=False, max_length=255, null=True)),
|
|
1447
|
-
('examiner_last_name', models.CharField(blank=True, editable=False, max_length=255, null=True)),
|
|
1448
|
-
('examination_hash', models.CharField(blank=True, db_index=True, editable=False, max_length=64, null=True)),
|
|
1449
|
-
('patient_hash', models.CharField(blank=True, db_index=True, editable=False, max_length=64, null=True)),
|
|
1450
|
-
('endoscope_type', models.CharField(blank=True, max_length=255, null=True)),
|
|
1451
|
-
('endoscope_sn', models.CharField(blank=True, max_length=255, null=True)),
|
|
1452
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1453
|
-
('examiners', models.ManyToManyField(blank=True, help_text='Pseudo-anonymized examiner(s) associated with the examination.', to='endoreg_db.examiner')),
|
|
1454
|
-
('patient_gender', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.gender')),
|
|
1455
|
-
('pseudo_examination', models.ForeignKey(blank=True, help_text='FK to the pseudo-anonymized PatientExamination record.', null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patientexamination')),
|
|
1456
|
-
('pseudo_patient', models.ForeignKey(blank=True, help_text='FK to the pseudo-anonymized Patient record.', null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1457
|
-
],
|
|
1458
|
-
),
|
|
1459
|
-
migrations.CreateModel(
|
|
1460
|
-
name='RawPdfFile',
|
|
1461
|
-
fields=[
|
|
1462
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1463
|
-
('pdf_hash', models.CharField(max_length=255, unique=True)),
|
|
1464
|
-
('text', models.TextField(blank=True, null=True)),
|
|
1465
|
-
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1466
|
-
('date_modified', models.DateTimeField(auto_now=True)),
|
|
1467
|
-
('anonymized', models.BooleanField(default=False, help_text='True if the PDF has been anonymized.')),
|
|
1468
|
-
('file', models.FileField(upload_to='raw_pdfs', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['pdf'])])),
|
|
1469
|
-
('anonymized_file', models.FileField(blank=True, null=True, upload_to='raw_pdfs', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['pdf'])])),
|
|
1470
|
-
('state_report_processing_required', models.BooleanField(default=True)),
|
|
1471
|
-
('state_report_processed', models.BooleanField(default=False)),
|
|
1472
|
-
('raw_meta', models.JSONField(blank=True, null=True)),
|
|
1473
|
-
('anonymized_text', models.TextField(blank=True, null=True)),
|
|
1474
|
-
('anonym_examination_report', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_file', to='endoreg_db.anonymexaminationreport')),
|
|
1475
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
|
|
1476
|
-
('examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_files', to='endoreg_db.patientexamination')),
|
|
1477
|
-
('examiner', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.examiner')),
|
|
1478
|
-
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_files', to='endoreg_db.patient')),
|
|
1479
|
-
('pdf_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.pdftype')),
|
|
1480
|
-
('state', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_file', to='endoreg_db.rawpdfstate')),
|
|
1481
|
-
('sensitive_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_files', to='endoreg_db.sensitivemeta')),
|
|
1482
|
-
],
|
|
1483
|
-
),
|
|
1484
|
-
migrations.CreateModel(
|
|
1485
|
-
name='AnonymHistologyReport',
|
|
1486
|
-
fields=[
|
|
1487
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1488
|
-
('meta', models.JSONField(blank=True, null=True)),
|
|
1489
|
-
('text', models.TextField(blank=True, null=True)),
|
|
1490
|
-
('date', models.DateField(blank=True, null=True)),
|
|
1491
|
-
('time', models.TimeField(blank=True, null=True)),
|
|
1492
|
-
('file', models.FileField(blank=True, null=True, upload_to=pathlib.PurePosixPath('pdfs'))),
|
|
1493
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
|
|
1494
|
-
('type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.documenttype')),
|
|
1495
|
-
('examiners', models.ManyToManyField(blank=True, to='endoreg_db.examiner')),
|
|
1496
|
-
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.DO_NOTHING, to='endoreg_db.patient')),
|
|
1497
|
-
('patient_examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.patientexamination')),
|
|
1498
|
-
('sensitive_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.sensitivemeta')),
|
|
1499
|
-
],
|
|
1500
|
-
options={
|
|
1501
|
-
'abstract': False,
|
|
1502
|
-
},
|
|
1503
|
-
),
|
|
1504
|
-
migrations.AddField(
|
|
1505
|
-
model_name='anonymexaminationreport',
|
|
1506
|
-
name='sensitive_meta',
|
|
1507
|
-
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.sensitivemeta'),
|
|
1508
|
-
),
|
|
1509
|
-
migrations.CreateModel(
|
|
1510
|
-
name='SensitiveMetaState',
|
|
1511
|
-
fields=[
|
|
1512
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1513
|
-
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
1514
|
-
('updated_at', models.DateTimeField(auto_now=True)),
|
|
1515
|
-
('dob_verified', models.BooleanField(default=False)),
|
|
1516
|
-
('names_verified', models.BooleanField(default=False)),
|
|
1517
|
-
('origin', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='state', to='endoreg_db.sensitivemeta')),
|
|
1518
|
-
],
|
|
1519
|
-
options={
|
|
1520
|
-
'verbose_name': 'Sensitive Meta State',
|
|
1521
|
-
'verbose_name_plural': 'Sensitive Meta States',
|
|
1522
|
-
},
|
|
1523
|
-
),
|
|
1524
|
-
migrations.CreateModel(
|
|
1525
|
-
name='Shift',
|
|
1526
|
-
fields=[
|
|
1527
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1528
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
1529
|
-
('description', models.TextField(blank=True, null=True)),
|
|
1530
|
-
('is_active', models.BooleanField(default=True)),
|
|
1531
|
-
('required_qualifications', models.ManyToManyField(related_name='shifts', to='endoreg_db.qualification')),
|
|
1532
|
-
('shift_types', models.ManyToManyField(related_name='shifts', to='endoreg_db.shifttype')),
|
|
1533
|
-
],
|
|
1534
|
-
),
|
|
1535
|
-
migrations.CreateModel(
|
|
1536
|
-
name='CenterShift',
|
|
1537
|
-
fields=[
|
|
1538
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1539
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
1540
|
-
('description', models.TextField(blank=True, null=True)),
|
|
1541
|
-
('start_time', models.TimeField()),
|
|
1542
|
-
('end_time', models.TimeField()),
|
|
1543
|
-
('estimated_presence_fraction', models.DecimalField(decimal_places=4, default=0.0, max_digits=5)),
|
|
1544
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_shifts', to='endoreg_db.center')),
|
|
1545
|
-
('scheduled_days', models.ManyToManyField(related_name='center_shifts', to='endoreg_db.scheduleddays')),
|
|
1546
|
-
('shift', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_shifts', to='endoreg_db.shift')),
|
|
1547
|
-
],
|
|
1548
|
-
),
|
|
1549
|
-
migrations.CreateModel(
|
|
1550
|
-
name='RequirementSet',
|
|
1551
|
-
fields=[
|
|
1552
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1553
|
-
('name', models.CharField(max_length=100, unique=True)),
|
|
1554
|
-
('description', models.TextField(blank=True, null=True)),
|
|
1555
|
-
('information_sources', models.ManyToManyField(blank=True, related_name='requirement_sets', to='endoreg_db.informationsource')),
|
|
1556
|
-
('links_to_sets', models.ManyToManyField(blank=True, related_name='links_from_sets', to='endoreg_db.requirementset')),
|
|
1557
|
-
('reqset_exam_links', models.ManyToManyField(blank=True, related_name='requirement_set', to='endoreg_db.examinationrequirementset')),
|
|
1558
|
-
('requirements', models.ManyToManyField(blank=True, related_name='requirement_sets', to='endoreg_db.requirement')),
|
|
1559
|
-
('requirement_set_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='requirement_sets', to='endoreg_db.requirementsettype')),
|
|
1560
|
-
('tags', models.ManyToManyField(blank=True, related_name='requirement_sets', to='endoreg_db.tag')),
|
|
1561
|
-
],
|
|
1562
|
-
),
|
|
1563
|
-
migrations.CreateModel(
|
|
1564
|
-
name='TransportRoute',
|
|
1565
|
-
fields=[
|
|
1566
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1567
|
-
('distance', models.FloatField()),
|
|
1568
|
-
('name', models.CharField(max_length=255)),
|
|
1569
|
-
('emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
1570
|
-
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1571
|
-
],
|
|
1572
|
-
),
|
|
1573
|
-
migrations.AddField(
|
|
1574
|
-
model_name='product',
|
|
1575
|
-
name='transport_route',
|
|
1576
|
-
field=models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.transportroute'),
|
|
1577
|
-
),
|
|
1578
|
-
migrations.CreateModel(
|
|
1579
|
-
name='ProductWeight',
|
|
1580
|
-
fields=[
|
|
1581
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1582
|
-
('name', models.CharField(max_length=255, null=True)),
|
|
1583
|
-
('measured', models.FloatField(null=True)),
|
|
1584
|
-
('verified', models.FloatField(null=True)),
|
|
1585
|
-
('manufacturer', models.FloatField(null=True)),
|
|
1586
|
-
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.product')),
|
|
1587
|
-
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1588
|
-
],
|
|
1589
|
-
),
|
|
1590
|
-
migrations.CreateModel(
|
|
1591
|
-
name='ProductMaterial',
|
|
1592
|
-
fields=[
|
|
1593
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1594
|
-
('component', models.CharField(max_length=255)),
|
|
1595
|
-
('quantity', models.FloatField()),
|
|
1596
|
-
('material', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='material_product_materials', to='endoreg_db.material')),
|
|
1597
|
-
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='product_product_materials', to='endoreg_db.product')),
|
|
1598
|
-
('unit', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='unit_product_materials', to='endoreg_db.unit')),
|
|
1599
|
-
],
|
|
1600
|
-
),
|
|
1601
|
-
migrations.CreateModel(
|
|
1602
|
-
name='PatientLabValue',
|
|
1603
|
-
fields=[
|
|
1604
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1605
|
-
('value', models.FloatField(blank=True, null=True)),
|
|
1606
|
-
('value_str', models.CharField(blank=True, max_length=255, null=True)),
|
|
1607
|
-
('datetime', models.DateTimeField(auto_now_add=True)),
|
|
1608
|
-
('normal_range', models.JSONField(default=dict)),
|
|
1609
|
-
('lab_value', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.labvalue')),
|
|
1610
|
-
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='lab_values', to='endoreg_db.patient')),
|
|
1611
|
-
('sample', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='values', to='endoreg_db.patientlabsample')),
|
|
1612
|
-
('unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
1613
|
-
],
|
|
1614
|
-
),
|
|
1615
|
-
migrations.AddField(
|
|
1616
|
-
model_name='medication',
|
|
1617
|
-
name='default_unit',
|
|
1618
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit'),
|
|
1619
|
-
),
|
|
1620
|
-
migrations.AddField(
|
|
1621
|
-
model_name='emissionfactor',
|
|
1622
|
-
name='unit',
|
|
1623
|
-
field=models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit'),
|
|
1624
|
-
),
|
|
1625
|
-
migrations.CreateModel(
|
|
1626
|
-
name='CenterResource',
|
|
1627
|
-
fields=[
|
|
1628
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1629
|
-
('name', models.CharField(max_length=255, null=True)),
|
|
1630
|
-
('quantity', models.FloatField()),
|
|
1631
|
-
('year', models.IntegerField()),
|
|
1632
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_resources', to='endoreg_db.center')),
|
|
1633
|
-
('transport_emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='center_resource_transport_emission_factor', to='endoreg_db.emissionfactor')),
|
|
1634
|
-
('use_emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='center_resource_use_emission_factor', to='endoreg_db.emissionfactor')),
|
|
1635
|
-
('resource', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.resource')),
|
|
1636
|
-
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1637
|
-
],
|
|
1638
|
-
),
|
|
1639
|
-
migrations.CreateModel(
|
|
1640
|
-
name='UploadJob',
|
|
1641
|
-
fields=[
|
|
1642
|
-
('id', models.UUIDField(default=uuid.uuid4, editable=False, help_text='Unique identifier for the upload job', primary_key=True, serialize=False)),
|
|
1643
|
-
('file', models.FileField(help_text='Uploaded file (PDF or video)', upload_to='uploads/%Y/%m/%d/')),
|
|
1644
|
-
('status', models.CharField(choices=[('pending', 'Pending'), ('processing', 'Processing'), ('anonymized', 'Anonymized'), ('error', 'Error')], default='pending', help_text='Current processing status of the upload', max_length=20)),
|
|
1645
|
-
('content_type', models.CharField(blank=True, help_text='MIME type of the uploaded file', max_length=100)),
|
|
1646
|
-
('error_detail', models.TextField(blank=True, help_text='Error message if processing failed')),
|
|
1647
|
-
('created_at', models.DateTimeField(auto_now_add=True, help_text='When the upload job was created')),
|
|
1648
|
-
('updated_at', models.DateTimeField(auto_now=True, help_text='When the upload job was last updated')),
|
|
1649
|
-
('sensitive_meta', models.ForeignKey(blank=True, help_text='Link to the created SensitiveMeta record after processing', null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.sensitivemeta')),
|
|
1650
|
-
],
|
|
1651
|
-
options={
|
|
1652
|
-
'verbose_name': 'Upload Job',
|
|
1653
|
-
'verbose_name_plural': 'Upload Jobs',
|
|
1654
|
-
'ordering': ['-created_at'],
|
|
1655
|
-
},
|
|
1656
|
-
),
|
|
1657
|
-
migrations.CreateModel(
|
|
1658
|
-
name='VideoFile',
|
|
1659
|
-
fields=[
|
|
1660
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1661
|
-
('uuid', models.UUIDField(default=uuid.uuid4, editable=False, unique=True)),
|
|
1662
|
-
('raw_file', models.FileField(blank=True, null=True, upload_to='videos', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['mp4'])])),
|
|
1663
|
-
('processed_file', models.FileField(blank=True, null=True, upload_to='videos', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['mp4'])])),
|
|
1664
|
-
('video_hash', models.CharField(help_text='Hash of the raw video file.', max_length=255, unique=True)),
|
|
1665
|
-
('processed_video_hash', models.CharField(blank=True, help_text='Hash of the processed video file, unique if not null.', max_length=255, null=True, unique=True)),
|
|
1666
|
-
('original_file_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
1667
|
-
('uploaded_at', models.DateTimeField(auto_now_add=True)),
|
|
1668
|
-
('frame_dir', models.CharField(blank=True, help_text='Path to frames extracted from the raw video.', max_length=512)),
|
|
1669
|
-
('fps', models.FloatField(blank=True, null=True)),
|
|
1670
|
-
('duration', models.FloatField(blank=True, null=True)),
|
|
1671
|
-
('frame_count', models.IntegerField(blank=True, null=True)),
|
|
1672
|
-
('width', models.IntegerField(blank=True, null=True)),
|
|
1673
|
-
('height', models.IntegerField(blank=True, null=True)),
|
|
1674
|
-
('suffix', models.CharField(blank=True, max_length=10, null=True)),
|
|
1675
|
-
('sequences', models.JSONField(blank=True, default=dict, help_text='AI prediction sequences based on raw frames.')),
|
|
1676
|
-
('date', models.DateField(blank=True, null=True)),
|
|
1677
|
-
('meta', models.JSONField(blank=True, null=True)),
|
|
1678
|
-
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1679
|
-
('date_modified', models.DateTimeField(auto_now=True)),
|
|
1680
|
-
('ai_model_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.modelmeta')),
|
|
1681
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.PROTECT, to='endoreg_db.center')),
|
|
1682
|
-
('examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='video_files', to='endoreg_db.patientexamination')),
|
|
1683
|
-
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='video_files', to='endoreg_db.patient')),
|
|
1684
|
-
('processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.PROTECT, to='endoreg_db.endoscopyprocessor')),
|
|
1685
|
-
('sensitive_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='video_file', to='endoreg_db.sensitivemeta')),
|
|
1686
|
-
('import_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta')),
|
|
1687
|
-
],
|
|
1688
|
-
),
|
|
1689
|
-
migrations.AddField(
|
|
1690
|
-
model_name='patientexamination',
|
|
1691
|
-
name='video',
|
|
1692
|
-
field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_examination', to='endoreg_db.videofile'),
|
|
1693
|
-
),
|
|
1694
|
-
migrations.AddField(
|
|
1695
|
-
model_name='labelvideosegment',
|
|
1696
|
-
name='video_file',
|
|
1697
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='label_video_segments', to='endoreg_db.videofile'),
|
|
1698
|
-
),
|
|
1699
|
-
migrations.CreateModel(
|
|
1700
|
-
name='Frame',
|
|
1701
|
-
fields=[
|
|
1702
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1703
|
-
('frame_number', models.PositiveIntegerField()),
|
|
1704
|
-
('relative_path', models.CharField(max_length=512)),
|
|
1705
|
-
('timestamp', models.FloatField(blank=True, null=True)),
|
|
1706
|
-
('is_extracted', models.BooleanField(default=False)),
|
|
1707
|
-
('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='frames', to='endoreg_db.videofile')),
|
|
1708
|
-
],
|
|
1709
|
-
options={
|
|
1710
|
-
'ordering': ['video', 'frame_number'],
|
|
1711
|
-
},
|
|
1712
|
-
),
|
|
1713
|
-
migrations.CreateModel(
|
|
1714
|
-
name='VideoMeta',
|
|
1715
|
-
fields=[
|
|
1716
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1717
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1718
|
-
('endoscope', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscope')),
|
|
1719
|
-
('ffmpeg_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ffmpegmeta')),
|
|
1720
|
-
('import_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta')),
|
|
1721
|
-
('processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
|
|
1722
|
-
],
|
|
1723
|
-
),
|
|
1724
|
-
migrations.AddField(
|
|
1725
|
-
model_name='videofile',
|
|
1726
|
-
name='video_meta',
|
|
1727
|
-
field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='video_file', to='endoreg_db.videometa'),
|
|
1728
|
-
),
|
|
1729
|
-
migrations.CreateModel(
|
|
1730
|
-
name='VideoPredictionMeta',
|
|
1731
|
-
fields=[
|
|
1732
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1733
|
-
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1734
|
-
('date_modified', models.DateTimeField(auto_now=True)),
|
|
1735
|
-
('prediction_array', models.BinaryField(blank=True, null=True)),
|
|
1736
|
-
('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.modelmeta')),
|
|
1737
|
-
('video_file', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='video_prediction_meta', to='endoreg_db.videofile')),
|
|
1738
|
-
],
|
|
1739
|
-
),
|
|
1740
|
-
migrations.AddField(
|
|
1741
|
-
model_name='labelvideosegment',
|
|
1742
|
-
name='prediction_meta',
|
|
1743
|
-
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='label_video_segments', to='endoreg_db.videopredictionmeta'),
|
|
1744
|
-
),
|
|
1745
|
-
migrations.CreateModel(
|
|
1746
|
-
name='VideoSegmentationAnnotation',
|
|
1747
|
-
fields=[
|
|
1748
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1749
|
-
('start_time', models.FloatField()),
|
|
1750
|
-
('stop_time', models.FloatField()),
|
|
1751
|
-
('is_true', models.BooleanField(default=True)),
|
|
1752
|
-
('video_file', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='video_segmentation_annotations', to='endoreg_db.videofile')),
|
|
1753
|
-
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videosegmentationlabel')),
|
|
1754
|
-
],
|
|
1755
|
-
),
|
|
1756
|
-
migrations.CreateModel(
|
|
1757
|
-
name='VideoSegmentationLabelSet',
|
|
1758
|
-
fields=[
|
|
1759
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1760
|
-
('name', models.CharField(max_length=255)),
|
|
1761
|
-
('description', models.TextField(blank=True, null=True)),
|
|
1762
|
-
('labels', models.ManyToManyField(related_name='labelsets', to='endoreg_db.videosegmentationlabel')),
|
|
1763
|
-
],
|
|
1764
|
-
),
|
|
1765
|
-
migrations.AddField(
|
|
1766
|
-
model_name='aimodel',
|
|
1767
|
-
name='video_segmentation_labelset',
|
|
1768
|
-
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='ai_models', to='endoreg_db.videosegmentationlabelset'),
|
|
1769
|
-
),
|
|
1770
|
-
migrations.AddField(
|
|
1771
|
-
model_name='videofile',
|
|
1772
|
-
name='state',
|
|
1773
|
-
field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='video_file', to='endoreg_db.videostate'),
|
|
1774
|
-
),
|
|
1775
|
-
migrations.CreateModel(
|
|
1776
|
-
name='CenterWaste',
|
|
1777
|
-
fields=[
|
|
1778
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1779
|
-
('year', models.IntegerField()),
|
|
1780
|
-
('quantity', models.FloatField()),
|
|
1781
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_wastes', to='endoreg_db.center')),
|
|
1782
|
-
('emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
1783
|
-
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1784
|
-
('waste', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.waste')),
|
|
1785
|
-
],
|
|
1786
|
-
),
|
|
1787
|
-
migrations.CreateModel(
|
|
1788
|
-
name='ImageClassificationAnnotation',
|
|
1789
|
-
fields=[
|
|
1790
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1791
|
-
('value', models.BooleanField()),
|
|
1792
|
-
('float_value', models.FloatField(blank=True, null=True)),
|
|
1793
|
-
('annotator', models.CharField(blank=True, max_length=255, null=True)),
|
|
1794
|
-
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1795
|
-
('date_modified', models.DateTimeField(auto_now=True)),
|
|
1796
|
-
('frame', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.frame')),
|
|
1797
|
-
('information_source', models.ForeignKey(blank=True, default=None, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='image_classification_annotations', to='endoreg_db.informationsource')),
|
|
1798
|
-
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.label')),
|
|
1799
|
-
('model_meta', models.ForeignKey(blank=True, default=None, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='image_classification_annotations', to='endoreg_db.modelmeta')),
|
|
1800
|
-
],
|
|
1801
|
-
options={
|
|
1802
|
-
'indexes': [models.Index(fields=['frame', 'label'], name='endoreg_db__frame_i_47f916_idx'), models.Index(fields=['frame'], name='endoreg_db__frame_i_92c75a_idx')],
|
|
1803
|
-
},
|
|
1804
|
-
),
|
|
1805
|
-
migrations.AddIndex(
|
|
1806
|
-
model_name='patientfinding',
|
|
1807
|
-
index=models.Index(fields=['patient_examination', 'finding'], name='endoreg_db__patient_54869f_idx'),
|
|
1808
|
-
),
|
|
1809
|
-
migrations.AddIndex(
|
|
1810
|
-
model_name='patientfinding',
|
|
1811
|
-
index=models.Index(fields=['patient_examination', 'is_active'], name='endoreg_db__patient_9359f8_idx'),
|
|
1812
|
-
),
|
|
1813
|
-
migrations.AddIndex(
|
|
1814
|
-
model_name='patientfinding',
|
|
1815
|
-
index=models.Index(fields=['created_at'], name='endoreg_db__created_b44d86_idx'),
|
|
1816
|
-
),
|
|
1817
|
-
migrations.AddIndex(
|
|
1818
|
-
model_name='patientfinding',
|
|
1819
|
-
index=models.Index(fields=['finding', 'is_active'], name='endoreg_db__finding_2f036b_idx'),
|
|
1820
|
-
),
|
|
1821
|
-
migrations.AddConstraint(
|
|
1822
|
-
model_name='patientfinding',
|
|
1823
|
-
constraint=models.UniqueConstraint(condition=models.Q(('is_active', True)), fields=('patient_examination', 'finding'), name='unique_active_finding_per_examination'),
|
|
1824
|
-
),
|
|
1825
|
-
migrations.AddConstraint(
|
|
1826
|
-
model_name='patientfinding',
|
|
1827
|
-
constraint=models.CheckConstraint(condition=models.Q(models.Q(('deactivated_at__isnull', True), ('deactivated_by__isnull', True)), models.Q(('deactivated_at__isnull', False), ('deactivated_by__isnull', False), ('is_active', False)), _connector='OR'), name='deactivation_fields_consistency'),
|
|
1828
|
-
),
|
|
1829
|
-
migrations.AlterUniqueTogether(
|
|
1830
|
-
name='frame',
|
|
1831
|
-
unique_together={('video', 'frame_number')},
|
|
1832
|
-
),
|
|
1833
|
-
migrations.AddIndex(
|
|
1834
|
-
model_name='videopredictionmeta',
|
|
1835
|
-
index=models.Index(fields=['model_meta', 'video_file'], name='endoreg_db__model_m_208dee_idx'),
|
|
1836
|
-
),
|
|
1837
|
-
migrations.AddConstraint(
|
|
1838
|
-
model_name='videopredictionmeta',
|
|
1839
|
-
constraint=models.UniqueConstraint(fields=('model_meta', 'video_file'), name='unique_prediction_per_video_model'),
|
|
1840
|
-
),
|
|
1841
|
-
migrations.AddIndex(
|
|
1842
|
-
model_name='labelvideosegment',
|
|
1843
|
-
index=models.Index(fields=['video_file', 'label', 'start_frame_number'], name='endoreg_db__video_f_fa9326_idx'),
|
|
1844
|
-
),
|
|
1845
|
-
migrations.AddIndex(
|
|
1846
|
-
model_name='labelvideosegment',
|
|
1847
|
-
index=models.Index(fields=['prediction_meta', 'label'], name='endoreg_db__predict_2bfba4_idx'),
|
|
1848
|
-
),
|
|
1849
|
-
migrations.AddConstraint(
|
|
1850
|
-
model_name='labelvideosegment',
|
|
1851
|
-
constraint=models.CheckConstraint(condition=models.Q(('start_frame_number__lt', models.F('end_frame_number'))), name='segment_start_lt_end'),
|
|
1852
|
-
),
|
|
1853
|
-
migrations.AddConstraint(
|
|
1854
|
-
model_name='videosegmentationannotation',
|
|
1855
|
-
constraint=models.CheckConstraint(condition=models.Q(('start_time__lt', models.F('stop_time'))), name='start_time_less_than_stop_time'),
|
|
1856
|
-
),
|
|
1857
|
-
]
|