endoreg-db 0.8.8.0__py3-none-any.whl → 0.8.9.2__py3-none-any.whl

endoreg_db/data/requirement/event_cardiology.yaml

@@ -1,251 +0,0 @@
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_des_implantation"
-    name_de: "Ereignis: Koronarstent-Implantation (DES) durchgeführt"
-    name_en: "Event: Coronary Stent Implantation (DES) performed"
-    description: "Ereignis: Koronarstent-Implantation (DES) durchgeführt"
-    operators:
-      - "models_match_any"
-    events:
-      - "coro_des_implantation"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_des_implantation_count_between_1_and_3 (exclusive)"
-    name_de: "Ereignis: Koronarstent-Implantation (DES) durchgeführt zwischen 1 und 3 (exklusive)"
-    name_en: "Event: Coronary Stent Implantation (DES) performed between 1 and 3 (exclusive)"
-    description: "Ereignis: Koronarstent-Implantation (DES) durchgeführt zwischen 1 und 3 (exklusive)"
-    operators:
-      - "models_match_count_in_range"
-    events:
-      - "coro_des_implantation"
-    numeric_value_min: 1
-    numeric_value_max: 3
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_des_implantation_count_greater_than_3"
-    name_de: "Ereignis: Koronarstent-Implantation (DES) durchgeführt mehr als 3"
-    name_en: "Event: Coronary Stent Implantation (DES) performed more than 3"
-    description: "Ereignis: Koronarstent-Implantation (DES) durchgeführt mehr als 3"
-    operators:
-      - "models_match_n_or_more"
-    events:
-      - "coro_des_implantation"
-    numeric_value: 3
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_bms_implantation"
-    name_de: "Ereignis: Koronarstent-Implantation (BMS) durchgeführt"
-    name_en: "Event: Coronary Stent Implantation (BMS) performed"
-    description: "Ereignis: Koronarstent-Implantation (BMS) durchgeführt"
-    operators:
-      - "models_match_any"
-    events:
-      - "coro_bms_implantation"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_complication_coro_stent_thrombosis"
-    name_de: "Ereignis: Komplikation Koronar Stent Thrombose"
-    name_en: "Event: Complication Coronary Stent Thrombosis"
-    description: "Ereignis: Komplikation Koronar Stent Thrombose"
-    operators:
-      - "models_match_any"
-    events:
-      - "complication_coro_stent_thrombosis"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_pulmonary_embolism"
-    name_de: "Ereignis: Lungenembolie"
-    name_en: "Event: Pulmonary Embolism"
-    description: "Ereignis: Lungenembolie"
-    operators:
-      - "models_match_any"
-    events:
-      - "pulmonary_embolism"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_deep_vein_thrombosis"
-    name_de: "Ereignis: Tiefe Beinvenenthrombose"
-    name_en: "Event: Deep Vein Thrombosis"
-    description: "Ereignis: Tiefe Beinvenenthrombose"
-    operators:
-      - "models_match_any"
-    events:
-      - "deep_vein_thrombosis"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_deep_vein_thrombosis_10_d"
-    name_de: "Ereignis: Tiefe Beinvenenthrombose innerhalb 10 Tage"
-    name_en: "Event: Deep Vein Thrombosis within 10 days"
-    description: "Ereignis: Tiefe Beinvenenthrombose innerhalb 10 Tage"
-    operators:
-      - "models_match_any_in_timeframe"
-    events:
-      - "deep_vein_thrombosis"
-    numeric_value_min: -10
-    numeric_value_max: 0
-    unit: "days"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_more_than_1_deep_vein_thrombosis"
-    name_de: "Ereignis: Mehr als 1 Tiefe Beinvenenthrombose"
-    name_en: "Event: More than 1 Deep Vein Thrombosis"
-    description: "Ereignis: Mehr als 1 Tiefe Beinvenenthrombose"
-    operators:
-      - "models_match_n_or_more"
-    events:
-      - "deep_vein_thrombosis"
-    numeric_value: 1
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_des_stent_implantation_30_d"
-    name_de: "Ereignis: Koronarstent-Implantation (DES) durchgeführt innerhalb 30 Tage"
-    name_en: "Event: Coronary Stent Implantation (DES) performed within 30 days"
-    description: "Ereignis: Koronarstent-Implantation (DES) durchgeführt innerhalb 30 Tage"
-    operators:
-      - "models_match_any_in_timeframe"
-    events:
-      - "coro_des_implantation"
-    numeric_value_min: -30
-    numeric_value_max: 0
-    unit: "days"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_des_stent_implantation_6_w"
-    name_de: "Ereignis: Koronarstent-Implantation (DES) durchgeführt innerhalb 6 Wochen"
-    name_en: "Event: Coronary Stent Implantation (DES) performed within 6 weeks"
-    description: "Ereignis: Koronarstent-Implantation (DES) durchgeführt innerhalb 6 Wochen"
-    operators:
-      - "models_match_any_in_timeframe"
-    events:
-      - "coro_des_implantation"
-    numeric_value_min: -6
-    numeric_value_max: 0
-    unit: "weeks"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_des_stent_implantation_6_m"
-    name_de: "Ereignis: Koronarstent-Implantation (DES) durchgeführt innerhalb 6 Monate"
-    name_en: "Event: Coronary Stent Implantation (DES) performed within 6 months"
-    description: "Ereignis: Koronarstent-Implantation (DES) durchgeführt innerhalb 6 Monate"
-    operators:
-      - "models_match_any_in_timeframe"
-    events:
-      - "coro_des_implantation"
-    numeric_value_min: -6
-    numeric_value_max: 0
-    unit: "months"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_des_stent_implantation_1_y"
-    name_de: "Ereignis: Koronarstent-Implantation (DES) durchgeführt innerhalb 1 Jahr"
-    name_en: "Event: Coronary Stent Implantation (DES) performed within 1 year"
-    description: "Ereignis: Koronarstent-Implantation (DES) durchgeführt innerhalb 1 Jahr"
-    operators:
-      - "models_match_any_in_timeframe"
-    events:
-      - "coro_des_implantation"
-    numeric_value_min: -1
-    numeric_value_max: 0
-    unit: "years"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_bms_stent_implantation_30_d"
-    name_de: "Ereignis: Koronarstent-Implantation (BMS) durchgeführt innerhalb 30 Tage"
-    name_en: "Event: Coronary Stent Implantation (BMS) performed within 30 days"
-    description: "Ereignis: Koronarstent-Implantation (BMS) durchgeführt innerhalb 30 Tage"
-    operators:
-      - "models_match_any_in_timeframe"
-    events:
-      - "coro_bms_implantation"
-    numeric_value_min: -30
-    numeric_value_max: 0
-    unit: "days"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_bms_stent_implantation_6_w"
-    name_de: "Ereignis: Koronarstent-Implantation (BMS) durchgeführt innerhalb 6 Wochen"
-    name_en: "Event: Coronary Stent Implantation (BMS) performed within 6 weeks"
-    description: "Ereignis: Koronarstent-Implantation (BMS) durchgeführt innerhalb 6 Wochen"
-    operators:
-      - "models_match_any_in_timeframe"
-    events:
-      - "coro_bms_implantation"
-    numeric_value_min: -6
-    numeric_value_max: 0
-    unit: "weeks"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_bms_stent_implantation_6_m"
-    name_de: "Ereignis: Koronarstent-Implantation (BMS) durchgeführt innerhalb 6 Monate"
-    name_en: "Event: Coronary Stent Implantation (BMS) performed within 6 months"
-    description: "Ereignis: Koronarstent-Implantation (BMS) durchgeführt innerhalb 6 Monate"
-    operators:
-      - "models_match_any_in_timeframe"
-    events:
-      - "coro_bms_implantation"
-    numeric_value_min: -6
-    numeric_value_max: 0
-    unit: "months"
-    requirement_types:
-      - "patient"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_had_coro_bms_stent_implantation_1_y"
-    name_de: "Ereignis: Koronarstent-Implantation (BMS) durchgeführt innerhalb 1 Jahr"
-    name_en: "Event: Coronary Stent Implantation (BMS) performed within 1 year"
-    description: "Ereignis: Koronarstent-Implantation (BMS) durchgeführt innerhalb 1 Jahr"
-    operators:
-      - "models_match_any_in_timeframe"
-    events:
-      - "coro_bms_implantation"
-    numeric_value_min: -1
-    numeric_value_max: 0
-    unit: "years"
-    requirement_types:
-      - "patient"

endoreg_db/data/requirement/event_requirements.yaml

@@ -1,145 +0,0 @@
-# /home/admin/dev/endo-ai/endoreg-db/endoreg_db/data/requirement/event_requirements.yaml
-- model: endoreg_db.requirement
-  fields:
-    name: "event_coro_des_implantation_exists"
-    name_de: "Ereignis Koronarstent-Implantation (DES) vorhanden"
-    name_en: "Event Coronary Stent Implantation (DES) exists"
-    description: "Checks if a 'coro_des_implantation' event exists for the patient."
-    requirement_types:
-      - "patient"
-      - "patient_event" # Added patient_event
-    operators:
-      - models_match_any
-    events:
-      - "coro_des_implantation"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_coro_bms_implantation_exists"
-    name_de: "Ereignis Koronarstent-Implantation (BMS) vorhanden"
-    name_en: "Event Coronary Stent Implantation (BMS) exists"
-    description: "Checks if a 'coro_bms_implantation' event exists for the patient."
-    requirement_types:
-      - "patient"
-      - "patient_event" # Added patient_event
-    operators:
-      - models_match_any
-    events:
-      - "coro_bms_implantation"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_pulmonary_embolism_exists"
-    name_de: "Ereignis Lungenembolie vorhanden"
-    name_en: "Event Pulmonary Embolism exists"
-    description: "Checks if a 'pulmonary_embolism' event exists for the patient."
-    requirement_types:
-      - "patient"
-      - "patient_event" # Added patient_event
-    operators:
-      - models_match_any
-    events:
-      - "pulmonary_embolism"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_deep_vein_thrombosis_exists"
-    name_de: "Ereignis Tiefe Beinvenenthrombose vorhanden"
-    name_en: "Event Deep Vein Thrombosis exists"
-    description: "Checks if a 'deep_vein_thrombosis' event exists for the patient."
-    requirement_types:
-      - "patient"
-      - "patient_event" # Added patient_event
-    operators:
-      - models_match_any
-    events:
-      - "deep_vein_thrombosis"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_stroke_exists"
-    name_de: "Ereignis Schlaganfall vorhanden"
-    name_en: "Event Stroke exists"
-    description: "Checks if a 'stroke' event exists for the patient."
-    requirement_types:
-      - "patient"
-      - "patient_event" # Added patient_event
-    operators:
-      - models_match_any
-    events:
-      - "stroke"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_transient_ischemic_attack_exists"
-    name_de: "Ereignis Transitorische ischämische Attacke vorhanden"
-    name_en: "Event Transient Ischemic Attack exists"
-    description: "Checks if a 'transient_ischemic_attack' event exists for the patient."
-    requirement_types:
-      - "patient"
-      - "patient_event" # Added patient_event
-    operators:
-      - models_match_any
-    events:
-      - "transient_ischemic_attack"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_hip_replacement_surgery_exists"
-    name_de: "Ereignis Hüft-TEP Operation vorhanden"
-    name_en: "Event Hip replacement surgery exists"
-    description: "Checks if a 'hip_replacement_surgery' event exists for the patient."
-    requirement_types:
-      - "patient"
-      - "patient_event" # Added patient_event
-    operators:
-      - models_match_any
-    events:
-      - "hip_replacement_surgery"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_knee_replacement_surgery_exists"
-    name_de: "Ereignis Knie-TEP Operation vorhanden"
-    name_en: "Event Knee replacement surgery exists"
-    description: "Checks if a 'knee_replacement_surgery' event exists for the patient."
-    requirement_types:
-      - "patient"
-      - "patient_event" # Added patient_event
-    operators:
-      - models_match_any
-    events:
-      - "knee_replacement_surgery"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "event_recurrent_thrombembolism_exists"
-    name_de: "Ereignis Rezidivierende Thrombembolien vorhanden"
-    name_en: "Event Recurrent Thrombembolism exists"
-    description: "Checks if a 'recurrent_thrombembolism' event exists for the patient."
-    requirement_types:
-      - "patient"
-      - "patient_event" # Added patient_event
-    operators:
-      - models_match_any
-    events:
-      - "recurrent_thrombembolism"
-
-# Example for models_match_any_in_timeframe
-- model: endoreg_db.requirement
-  fields:
-    name: "event_stroke_in_last_30_days"
-    name_de: "Ereignis Schlaganfall in den letzten 30 Tagen"
-    name_en: "Event Stroke in the last 30 days"
-    description: "Checks if a 'stroke' event occurred for the patient in the last 30 days."
-    requirement_types: # Defines which input models are expected by Requirement.evaluate()
-      - "patient"
-      - "patient_event" # This tells the system to look for PatientEvent models in the input
-    operators:
-      - models_match_any_in_timeframe
-    events: # This links the Requirement to specific Event models (e.g. "stroke")
-      - "stroke"
-    # Timeframe definition for the operator:
-    numeric_value_min: -30 # Start of timeframe (days ago)
-    numeric_value_max: 0   # End of timeframe (days ago, i.e., today)
-    unit: "days"           # Unit for the timeframe

endoreg_db/data/requirement/finding_colon_polyp.yaml

@@ -1,50 +0,0 @@
-- model: endoreg_db.requirement
-  fields:
-    name: "colon_austria_screening_polyp_size"
-    requirement_types:
-      - "patient_examination"
-      - "patient_finding"
-    operators:
-      - "models_match_any"
-    finding_classifications:
-      - "colon_lesion_size_mm"
-      - "colon_lesion_size_austria_categorical"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "colonoscopy_austria_screening_polyp_location"
-    requirement_types:
-      - "patient_examination"
-      - "patient_finding"
-    operators:
-      - "models_match_any"
-    finding_classifications:
-      - "colonoscopy_austria_screening_location"
-      - "colonoscopy_location_default"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "colonoscopy_austria_screening_polyp_morphology"
-    operators:
-      - "models_match_any"
-    requirement_types:
-      - "patient_examination"
-      - "patient_finding"
-    finding_classifications:
-      - "colon_lesion_paris"
-      - "colon_lesion_lst"
-      - "colon_lesion_planarity_default"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "colonoscopy_austria_screening_polyp_histology"
-    requirement_types:
-      - "patient_finding" 
-      - "patient_examination"
-    operators:
-      - "models_match_all"
-    finding_classifications:
-      - "colonoscopy_polyp_histology"
-      - "colonoscopy_polyp_histology_dysplasia"
-      - "colonoscopy_histology_dignity"
-    

endoreg_db/data/requirement/gender.yaml

@@ -1,25 +0,0 @@
-- model: endoreg_db.requirement
-  fields:
-    name: "patient_gender_is_male"
-    name_de: "Patient ist männlich"
-    name_en: "Patient is male"
-    description: "Checks if the patient is male."
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    genders:
-      - "male"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "patient_gender_is_female"
-    name_de: "Patient ist weiblich"
-    name_en: "Patient is female"
-    description: "Checks if the patient is female."
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    genders:
-      - "female"