endoreg-db 0.8.8.0__py3-none-any.whl → 0.8.9.2__py3-none-any.whl

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  1. endoreg_db/data/__init__.py +22 -8
  2. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +0 -1
  3. endoreg_db/data/examination/examinations/data.yaml +114 -14
  4. endoreg_db/data/examination/time-type/data.yaml +0 -3
  5. endoreg_db/data/examination_indication/endoscopy.yaml +108 -173
  6. endoreg_db/data/examination_indication_classification/endoscopy.yaml +0 -70
  7. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +33 -37
  8. endoreg_db/data/finding/00_generic.yaml +35 -0
  9. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  10. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  11. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  12. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  13. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  14. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  15. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  16. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  17. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  18. endoreg_db/data/finding_classification/{colonoscopy_bowel_preparation.yaml → 02_colonoscopy_baseline.yaml} +35 -20
  19. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  20. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  21. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  22. endoreg_db/data/finding_classification_choice/{yes_no_na.yaml → 00_generic.yaml} +5 -1
  23. endoreg_db/data/finding_classification_choice/{examination_setting_generic_types.yaml → 00_generic_baseline.yaml} +10 -2
  24. endoreg_db/data/finding_classification_choice/{complication_generic_types.yaml → 00_generic_complication.yaml} +1 -1
  25. endoreg_db/data/finding_classification_choice/{histology.yaml → 00_generic_histology.yaml} +1 -4
  26. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  27. endoreg_db/data/finding_classification_choice/{bowel_preparation.yaml → 02_colonoscopy_bowel_preparation.yaml} +1 -30
  28. endoreg_db/data/{_examples/finding_classification_choice/colonoscopy_not_complete_reason.yaml → finding_classification_choice/02_colonoscopy_generic.yaml} +1 -1
  29. endoreg_db/data/finding_classification_choice/{histology_polyp.yaml → 02_colonoscopy_histology.yaml} +1 -1
  30. endoreg_db/data/{_examples/finding_classification_choice/colonoscopy_location.yaml → finding_classification_choice/02_colonoscopy_location.yaml} +23 -4
  31. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  32. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  33. endoreg_db/data/{_examples/finding_classification_choice/colon_lesion_paris.yaml → finding_classification_choice/02_colonoscopy_polyp_morphology.yaml} +26 -8
  34. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  35. endoreg_db/data/finding_classification_type/{colonoscopy_basic.yaml → 00_generic.yaml} +18 -13
  36. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  37. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  38. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  39. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  40. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  41. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  42. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  43. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  44. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  45. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  46. endoreg_db/data/finding_type/data.yaml +8 -12
  47. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  48. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  49. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +0 -2
  50. endoreg_db/data/requirement_set/90_coloreg.yaml +20 -8
  51. endoreg_db/exceptions.py +0 -1
  52. endoreg_db/forms/examination_form.py +1 -1
  53. endoreg_db/helpers/data_loader.py +124 -52
  54. endoreg_db/helpers/default_objects.py +116 -81
  55. endoreg_db/import_files/__init__.py +27 -0
  56. endoreg_db/import_files/context/__init__.py +7 -0
  57. endoreg_db/import_files/context/default_sensitive_meta.py +81 -0
  58. endoreg_db/import_files/context/ensure_center.py +17 -0
  59. endoreg_db/import_files/context/file_lock.py +66 -0
  60. endoreg_db/import_files/context/import_context.py +43 -0
  61. endoreg_db/import_files/context/validate_directories.py +56 -0
  62. endoreg_db/import_files/file_storage/__init__.py +15 -0
  63. endoreg_db/import_files/file_storage/create_report_file.py +76 -0
  64. endoreg_db/import_files/file_storage/create_video_file.py +75 -0
  65. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +39 -0
  66. endoreg_db/import_files/file_storage/state_management.py +496 -0
  67. endoreg_db/import_files/file_storage/storage.py +36 -0
  68. endoreg_db/import_files/import_service.md +26 -0
  69. endoreg_db/import_files/processing/__init__.py +11 -0
  70. endoreg_db/import_files/processing/report_processing/report_anonymization.py +94 -0
  71. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  72. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  73. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  74. endoreg_db/import_files/pseudonymization/k_anonymity.py +182 -0
  75. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +128 -0
  76. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  77. endoreg_db/import_files/report_import_service.py +141 -0
  78. endoreg_db/import_files/video_import_service.py +150 -0
  79. endoreg_db/management/commands/import_report.py +130 -65
  80. endoreg_db/management/commands/import_video_with_classification.py +1 -1
  81. endoreg_db/management/commands/load_ai_model_data.py +5 -5
  82. endoreg_db/management/commands/load_ai_model_label_data.py +9 -7
  83. endoreg_db/management/commands/load_base_db_data.py +5 -134
  84. endoreg_db/management/commands/load_contraindication_data.py +14 -16
  85. endoreg_db/management/commands/load_disease_classification_choices_data.py +15 -18
  86. endoreg_db/management/commands/load_disease_classification_data.py +15 -18
  87. endoreg_db/management/commands/load_disease_data.py +25 -28
  88. endoreg_db/management/commands/load_endoscope_data.py +20 -27
  89. endoreg_db/management/commands/load_event_data.py +14 -16
  90. endoreg_db/management/commands/load_examination_data.py +31 -44
  91. endoreg_db/management/commands/load_examination_indication_data.py +20 -21
  92. endoreg_db/management/commands/load_finding_data.py +52 -80
  93. endoreg_db/management/commands/load_information_source.py +21 -23
  94. endoreg_db/management/commands/load_lab_value_data.py +17 -26
  95. endoreg_db/management/commands/load_medication_data.py +13 -12
  96. endoreg_db/management/commands/load_organ_data.py +15 -19
  97. endoreg_db/management/commands/load_pdf_type_data.py +19 -18
  98. endoreg_db/management/commands/load_profession_data.py +14 -17
  99. endoreg_db/management/commands/load_qualification_data.py +20 -23
  100. endoreg_db/management/commands/load_report_reader_flag_data.py +17 -19
  101. endoreg_db/management/commands/load_requirement_data.py +14 -20
  102. endoreg_db/management/commands/load_risk_data.py +7 -6
  103. endoreg_db/management/commands/load_shift_data.py +20 -23
  104. endoreg_db/management/commands/load_tag_data.py +8 -11
  105. endoreg_db/management/commands/load_unit_data.py +17 -19
  106. endoreg_db/management/commands/start_filewatcher.py +46 -37
  107. endoreg_db/management/commands/validate_video_files.py +1 -5
  108. endoreg_db/migrations/0001_initial.py +1360 -1812
  109. endoreg_db/models/administration/person/patient/patient.py +72 -46
  110. endoreg_db/models/label/__init__.py +2 -2
  111. endoreg_db/models/label/annotation/video_segmentation_annotation.py +18 -26
  112. endoreg_db/models/label/label_video_segment/label_video_segment.py +23 -1
  113. endoreg_db/models/media/pdf/raw_pdf.py +136 -64
  114. endoreg_db/models/media/pdf/report_reader/report_reader_config.py +34 -10
  115. endoreg_db/models/media/processing_history/__init__.py +5 -0
  116. endoreg_db/models/media/processing_history/processing_history.py +96 -0
  117. endoreg_db/models/media/video/create_from_file.py +101 -31
  118. endoreg_db/models/media/video/video_file.py +125 -105
  119. endoreg_db/models/media/video/video_file_io.py +31 -26
  120. endoreg_db/models/medical/contraindication/README.md +1 -0
  121. endoreg_db/models/medical/examination/examination.py +28 -8
  122. endoreg_db/models/medical/examination/examination_indication.py +13 -79
  123. endoreg_db/models/medical/examination/examination_time.py +8 -3
  124. endoreg_db/models/medical/finding/finding.py +5 -12
  125. endoreg_db/models/medical/finding/finding_classification.py +18 -37
  126. endoreg_db/models/medical/finding/finding_intervention.py +7 -9
  127. endoreg_db/models/medical/hardware/endoscope.py +6 -0
  128. endoreg_db/models/medical/patient/medication_examples.py +5 -1
  129. endoreg_db/models/medical/patient/patient_finding.py +1 -1
  130. endoreg_db/models/metadata/pdf_meta.py +22 -10
  131. endoreg_db/models/metadata/sensitive_meta.py +3 -0
  132. endoreg_db/models/metadata/sensitive_meta_logic.py +200 -124
  133. endoreg_db/models/other/information_source.py +27 -6
  134. endoreg_db/models/report/__init__.py +0 -0
  135. endoreg_db/models/report/images.py +0 -0
  136. endoreg_db/models/report/report.py +6 -0
  137. endoreg_db/models/requirement/requirement.py +59 -399
  138. endoreg_db/models/requirement/requirement_operator.py +86 -98
  139. endoreg_db/models/state/audit_ledger.py +4 -5
  140. endoreg_db/models/state/raw_pdf.py +69 -30
  141. endoreg_db/models/state/video.py +65 -49
  142. endoreg_db/models/upload_job.py +33 -9
  143. endoreg_db/models/utils.py +27 -23
  144. endoreg_db/queries/__init__.py +3 -1
  145. endoreg_db/schemas/examination_evaluation.py +1 -1
  146. endoreg_db/serializers/__init__.py +2 -8
  147. endoreg_db/serializers/label_video_segment/label_video_segment.py +2 -29
  148. endoreg_db/serializers/meta/__init__.py +1 -6
  149. endoreg_db/serializers/misc/sensitive_patient_data.py +50 -26
  150. endoreg_db/serializers/patient_examination/patient_examination.py +3 -3
  151. endoreg_db/serializers/pdf/anony_text_validation.py +39 -23
  152. endoreg_db/serializers/video/video_file_list.py +65 -34
  153. endoreg_db/services/__old/pdf_import.py +1487 -0
  154. endoreg_db/services/__old/video_import.py +1306 -0
  155. endoreg_db/services/anonymization.py +63 -26
  156. endoreg_db/services/lookup_service.py +28 -28
  157. endoreg_db/services/lookup_store.py +2 -2
  158. endoreg_db/services/pdf_import.py +0 -1480
  159. endoreg_db/services/report_import.py +10 -0
  160. endoreg_db/services/video_import.py +6 -1165
  161. endoreg_db/tasks/upload_tasks.py +79 -70
  162. endoreg_db/tasks/video_ingest.py +8 -4
  163. endoreg_db/urls/__init__.py +0 -14
  164. endoreg_db/urls/ai.py +32 -0
  165. endoreg_db/urls/media.py +21 -24
  166. endoreg_db/utils/dataloader.py +87 -57
  167. endoreg_db/utils/paths.py +110 -46
  168. endoreg_db/utils/pipelines/Readme.md +1 -1
  169. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +97 -0
  170. endoreg_db/utils/video/ffmpeg_wrapper.py +217 -52
  171. endoreg_db/views/__init__.py +85 -173
  172. endoreg_db/views/ai/__init__.py +8 -0
  173. endoreg_db/views/ai/label.py +155 -0
  174. endoreg_db/views/anonymization/media_management.py +8 -7
  175. endoreg_db/views/anonymization/overview.py +97 -68
  176. endoreg_db/views/anonymization/validate.py +25 -21
  177. endoreg_db/views/media/__init__.py +5 -20
  178. endoreg_db/views/media/pdf_media.py +109 -65
  179. endoreg_db/views/media/sensitive_metadata.py +163 -148
  180. endoreg_db/views/meta/__init__.py +0 -8
  181. endoreg_db/views/misc/__init__.py +1 -7
  182. endoreg_db/views/misc/upload_views.py +94 -93
  183. endoreg_db/views/report/__init__.py +7 -0
  184. endoreg_db/views/{pdf → report}/reimport.py +45 -24
  185. endoreg_db/views/{pdf/pdf_stream.py → report/report_stream.py} +40 -32
  186. endoreg_db/views/requirement/lookup_store.py +22 -90
  187. endoreg_db/views/video/__init__.py +23 -22
  188. endoreg_db/views/video/correction.py +201 -172
  189. endoreg_db/views/video/reimport.py +1 -1
  190. endoreg_db/views/{media/video_segments.py → video/segments_crud.py} +75 -37
  191. endoreg_db/views/video/{video_meta.py → video_meta_stats.py} +2 -2
  192. endoreg_db/views/video/video_stream.py +7 -8
  193. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/METADATA +2 -2
  194. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/RECORD +217 -335
  195. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/WHEEL +1 -1
  196. endoreg_db/data/_examples/disease.yaml +0 -55
  197. endoreg_db/data/_examples/disease_classification.yaml +0 -13
  198. endoreg_db/data/_examples/disease_classification_choice.yaml +0 -62
  199. endoreg_db/data/_examples/event.yaml +0 -64
  200. endoreg_db/data/_examples/examination.yaml +0 -72
  201. endoreg_db/data/_examples/finding/anatomy_colon.yaml +0 -128
  202. endoreg_db/data/_examples/finding/colonoscopy.yaml +0 -40
  203. endoreg_db/data/_examples/finding/colonoscopy_bowel_prep.yaml +0 -56
  204. endoreg_db/data/_examples/finding/complication.yaml +0 -16
  205. endoreg_db/data/_examples/finding/data.yaml +0 -105
  206. endoreg_db/data/_examples/finding/examination_setting.yaml +0 -16
  207. endoreg_db/data/_examples/finding/medication_related.yaml +0 -18
  208. endoreg_db/data/_examples/finding/outcome.yaml +0 -12
  209. endoreg_db/data/_examples/finding_classification/colonoscopy_bowel_preparation.yaml +0 -68
  210. endoreg_db/data/_examples/finding_classification/colonoscopy_jnet.yaml +0 -22
  211. endoreg_db/data/_examples/finding_classification/colonoscopy_kudo.yaml +0 -25
  212. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_circularity.yaml +0 -20
  213. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_planarity.yaml +0 -24
  214. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_size.yaml +0 -68
  215. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_surface.yaml +0 -20
  216. endoreg_db/data/_examples/finding_classification/colonoscopy_location.yaml +0 -80
  217. endoreg_db/data/_examples/finding_classification/colonoscopy_lst.yaml +0 -21
  218. endoreg_db/data/_examples/finding_classification/colonoscopy_nice.yaml +0 -20
  219. endoreg_db/data/_examples/finding_classification/colonoscopy_paris.yaml +0 -26
  220. endoreg_db/data/_examples/finding_classification/colonoscopy_sano.yaml +0 -22
  221. endoreg_db/data/_examples/finding_classification/colonoscopy_summary.yaml +0 -53
  222. endoreg_db/data/_examples/finding_classification/complication_generic.yaml +0 -25
  223. endoreg_db/data/_examples/finding_classification/examination_setting_generic.yaml +0 -40
  224. endoreg_db/data/_examples/finding_classification/histology_colo.yaml +0 -51
  225. endoreg_db/data/_examples/finding_classification/intervention_required.yaml +0 -26
  226. endoreg_db/data/_examples/finding_classification/medication_related.yaml +0 -23
  227. endoreg_db/data/_examples/finding_classification/visualized.yaml +0 -33
  228. endoreg_db/data/_examples/finding_classification_choice/bowel_preparation.yaml +0 -78
  229. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_circularity_default.yaml +0 -32
  230. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_jnet.yaml +0 -15
  231. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_kudo.yaml +0 -23
  232. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_lst.yaml +0 -15
  233. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_nice.yaml +0 -17
  234. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_planarity_default.yaml +0 -49
  235. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_sano.yaml +0 -14
  236. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_surface_intact_default.yaml +0 -36
  237. endoreg_db/data/_examples/finding_classification_choice/colonoscopy_size.yaml +0 -82
  238. endoreg_db/data/_examples/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +0 -15
  239. endoreg_db/data/_examples/finding_classification_choice/complication_generic_types.yaml +0 -15
  240. endoreg_db/data/_examples/finding_classification_choice/examination_setting_generic_types.yaml +0 -15
  241. endoreg_db/data/_examples/finding_classification_choice/histology.yaml +0 -24
  242. endoreg_db/data/_examples/finding_classification_choice/histology_polyp.yaml +0 -20
  243. endoreg_db/data/_examples/finding_classification_choice/outcome.yaml +0 -19
  244. endoreg_db/data/_examples/finding_classification_choice/yes_no_na.yaml +0 -11
  245. endoreg_db/data/_examples/finding_classification_type/colonoscopy_basic.yaml +0 -48
  246. endoreg_db/data/_examples/finding_intervention/endoscopy.yaml +0 -43
  247. endoreg_db/data/_examples/finding_intervention/endoscopy_colonoscopy.yaml +0 -168
  248. endoreg_db/data/_examples/finding_intervention/endoscopy_egd.yaml +0 -128
  249. endoreg_db/data/_examples/finding_intervention/endoscopy_ercp.yaml +0 -32
  250. endoreg_db/data/_examples/finding_intervention/endoscopy_eus_lower.yaml +0 -9
  251. endoreg_db/data/_examples/finding_intervention/endoscopy_eus_upper.yaml +0 -36
  252. endoreg_db/data/_examples/finding_intervention_type/endoscopy.yaml +0 -15
  253. endoreg_db/data/_examples/finding_type/data.yaml +0 -43
  254. endoreg_db/data/_examples/requirement/age.yaml +0 -26
  255. endoreg_db/data/_examples/requirement/gender.yaml +0 -25
  256. endoreg_db/data/_examples/requirement_set/01_endoscopy_generic.yaml +0 -48
  257. endoreg_db/data/_examples/requirement_set/colonoscopy_austria_screening.yaml +0 -57
  258. endoreg_db/data/_examples/requirement_set/endoscopy_bleeding_risk.yaml +0 -52
  259. endoreg_db/data/_examples/yaml_examples.xlsx +0 -0
  260. endoreg_db/data/finding/anatomy_colon.yaml +0 -128
  261. endoreg_db/data/finding/colonoscopy.yaml +0 -40
  262. endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +0 -56
  263. endoreg_db/data/finding/complication.yaml +0 -16
  264. endoreg_db/data/finding/data.yaml +0 -105
  265. endoreg_db/data/finding/examination_setting.yaml +0 -16
  266. endoreg_db/data/finding/medication_related.yaml +0 -18
  267. endoreg_db/data/finding/outcome.yaml +0 -12
  268. endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +0 -22
  269. endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +0 -25
  270. endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +0 -20
  271. endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +0 -24
  272. endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +0 -38
  273. endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +0 -20
  274. endoreg_db/data/finding_classification/colonoscopy_location.yaml +0 -49
  275. endoreg_db/data/finding_classification/colonoscopy_lst.yaml +0 -21
  276. endoreg_db/data/finding_classification/colonoscopy_nice.yaml +0 -20
  277. endoreg_db/data/finding_classification/colonoscopy_paris.yaml +0 -26
  278. endoreg_db/data/finding_classification/colonoscopy_sano.yaml +0 -22
  279. endoreg_db/data/finding_classification/colonoscopy_summary.yaml +0 -53
  280. endoreg_db/data/finding_classification/complication_generic.yaml +0 -25
  281. endoreg_db/data/finding_classification/examination_setting_generic.yaml +0 -40
  282. endoreg_db/data/finding_classification/histology_colo.yaml +0 -43
  283. endoreg_db/data/finding_classification/intervention_required.yaml +0 -26
  284. endoreg_db/data/finding_classification/medication_related.yaml +0 -23
  285. endoreg_db/data/finding_classification/visualized.yaml +0 -33
  286. endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +0 -32
  287. endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +0 -15
  288. endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +0 -23
  289. endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +0 -15
  290. endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +0 -17
  291. endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +0 -57
  292. endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +0 -49
  293. endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +0 -14
  294. endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +0 -36
  295. endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +0 -229
  296. endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +0 -19
  297. endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +0 -82
  298. endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +0 -15
  299. endoreg_db/data/finding_classification_choice/outcome.yaml +0 -19
  300. endoreg_db/data/finding_intervention/endoscopy.yaml +0 -43
  301. endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +0 -168
  302. endoreg_db/data/finding_intervention/endoscopy_egd.yaml +0 -128
  303. endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +0 -32
  304. endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +0 -9
  305. endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +0 -36
  306. endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +0 -79
  307. endoreg_db/data/requirement/age.yaml +0 -26
  308. endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +0 -45
  309. endoreg_db/data/requirement/disease_cardiovascular.yaml +0 -79
  310. endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +0 -41
  311. endoreg_db/data/requirement/disease_hepatology.yaml +0 -12
  312. endoreg_db/data/requirement/disease_misc.yaml +0 -12
  313. endoreg_db/data/requirement/disease_renal.yaml +0 -96
  314. endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +0 -59
  315. endoreg_db/data/requirement/event_cardiology.yaml +0 -251
  316. endoreg_db/data/requirement/event_requirements.yaml +0 -145
  317. endoreg_db/data/requirement/finding_colon_polyp.yaml +0 -50
  318. endoreg_db/data/requirement/gender.yaml +0 -25
  319. endoreg_db/data/requirement/lab_value.yaml +0 -441
  320. endoreg_db/data/requirement/medication.yaml +0 -93
  321. endoreg_db/data/requirement_operator/age.yaml +0 -13
  322. endoreg_db/data/requirement_operator/lab_operators.yaml +0 -129
  323. endoreg_db/data/requirement_operator/model_operators.yaml +0 -96
  324. endoreg_db/management/commands/init_default_ai_model.py +0 -112
  325. endoreg_db/management/commands/reset_celery_schedule.py +0 -9
  326. endoreg_db/management/commands/validate_video.py +0 -204
  327. endoreg_db/migrations/0002_requirementset_depends_on.py +0 -18
  328. endoreg_db/migrations/_old/0001_initial.py +0 -1857
  329. endoreg_db/migrations/_old/0002_add_video_correction_models.py +0 -52
  330. endoreg_db/migrations/_old/0003_add_center_display_name.py +0 -30
  331. endoreg_db/migrations/_old/0004_employee_city_employee_post_code_employee_street_and_more.py +0 -68
  332. endoreg_db/migrations/_old/0004_remove_casetemplate_rules_and_more.py +0 -77
  333. endoreg_db/migrations/_old/0005_merge_20251111_1003.py +0 -14
  334. endoreg_db/migrations/_old/0006_sensitivemeta_anonymized_text_and_more.py +0 -68
  335. endoreg_db/migrations/_old/0007_remove_rule_attribute_dtype_remove_rule_rule_type_and_more.py +0 -89
  336. endoreg_db/migrations/_old/0008_remove_event_event_classification_and_more.py +0 -27
  337. endoreg_db/migrations/_old/0009_alter_modelmeta_options_and_more.py +0 -21
  338. endoreg_db/renames.yml +0 -8
  339. endoreg_db/serializers/_old/raw_pdf_meta_validation.py +0 -223
  340. endoreg_db/serializers/_old/raw_video_meta_validation.py +0 -179
  341. endoreg_db/serializers/_old/video.py +0 -71
  342. endoreg_db/serializers/meta/pdf_file_meta_extraction.py +0 -115
  343. endoreg_db/serializers/meta/report_meta.py +0 -53
  344. endoreg_db/serializers/report/__init__.py +0 -9
  345. endoreg_db/serializers/report/mixins.py +0 -45
  346. endoreg_db/serializers/report/report.py +0 -105
  347. endoreg_db/serializers/report/report_list.py +0 -22
  348. endoreg_db/serializers/report/secure_file_url.py +0 -26
  349. endoreg_db/services/requirements_object.py +0 -147
  350. endoreg_db/services/storage_aware_video_processor.py +0 -370
  351. endoreg_db/urls/files.py +0 -6
  352. endoreg_db/urls/label_video_segment_validate.py +0 -33
  353. endoreg_db/urls/label_video_segments.py +0 -46
  354. endoreg_db/views/label/__init__.py +0 -5
  355. endoreg_db/views/label/label.py +0 -15
  356. endoreg_db/views/label_video_segment/__init__.py +0 -16
  357. endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +0 -44
  358. endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +0 -50
  359. endoreg_db/views/label_video_segment/label_video_segment.py +0 -77
  360. endoreg_db/views/label_video_segment/label_video_segment_by_label.py +0 -174
  361. endoreg_db/views/label_video_segment/label_video_segment_detail.py +0 -73
  362. endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +0 -46
  363. endoreg_db/views/label_video_segment/validate.py +0 -226
  364. endoreg_db/views/media/segments.py +0 -71
  365. endoreg_db/views/meta/available_files_list.py +0 -146
  366. endoreg_db/views/meta/report_meta.py +0 -53
  367. endoreg_db/views/meta/sensitive_meta_detail.py +0 -85
  368. endoreg_db/views/misc/secure_file_serving_view.py +0 -80
  369. endoreg_db/views/misc/secure_file_url_view.py +0 -84
  370. endoreg_db/views/misc/secure_url_validate.py +0 -79
  371. endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +0 -164
  372. endoreg_db/views/patient_finding_location/__init__.py +0 -5
  373. endoreg_db/views/patient_finding_location/pfl_create.py +0 -70
  374. endoreg_db/views/patient_finding_morphology/__init__.py +0 -5
  375. endoreg_db/views/patient_finding_morphology/pfm_create.py +0 -70
  376. endoreg_db/views/pdf/__init__.py +0 -8
  377. endoreg_db/views/video/segmentation.py +0 -274
  378. endoreg_db/views/video/task_status.py +0 -49
  379. endoreg_db/views/video/timeline.py +0 -46
  380. endoreg_db/views/video/video_analyze.py +0 -52
  381. /endoreg_db/data/requirement/{colon_polyp_intervention.yaml → old/colon_polyp_intervention.yaml} +0 -0
  382. /endoreg_db/data/{_examples/requirement → requirement/old}/colonoscopy_baseline_austria.yaml +0 -0
  383. /endoreg_db/data/requirement/{coloreg_colon_polyp.yaml → old/coloreg_colon_polyp.yaml} +0 -0
  384. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_cardiovascular.yaml +0 -0
  385. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_classification_choice_cardiovascular.yaml +0 -0
  386. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_hepatology.yaml +0 -0
  387. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_misc.yaml +0 -0
  388. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_renal.yaml +0 -0
  389. /endoreg_db/data/{_examples/requirement → requirement/old}/endoscopy_bleeding_risk.yaml +0 -0
  390. /endoreg_db/data/{_examples/requirement → requirement/old}/event_cardiology.yaml +0 -0
  391. /endoreg_db/data/{_examples/requirement → requirement/old}/event_requirements.yaml +0 -0
  392. /endoreg_db/data/{_examples/requirement → requirement/old}/finding_colon_polyp.yaml +0 -0
  393. /endoreg_db/{urls/sensitive_meta.py → data/requirement/old/gender.yaml} +0 -0
  394. /endoreg_db/data/{_examples/requirement → requirement/old}/lab_value.yaml +0 -0
  395. /endoreg_db/data/{_examples/requirement → requirement/old}/medication.yaml +0 -0
  396. /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/age.yaml +0 -0
  397. /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/lab_operators.yaml +0 -0
  398. /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/model_operators.yaml +0 -0
  399. /endoreg_db/{views/pdf/pdf_stream_views.py → import_files/pseudonymization/__init__.py} +0 -0
  400. /endoreg_db/utils/requirement_operator_logic/{lab_value_operators.py → _old/lab_value_operators.py} +0 -0
  401. /endoreg_db/utils/requirement_operator_logic/{model_evaluators.py → _old/model_evaluators.py} +0 -0
  402. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/licenses/LICENSE +0 -0
endoreg_db/data/_examples/finding_classification/colonoscopy_bowel_preparation.yaml DELETED
@@ -1,68 +0,0 @@
1
- - model: endoreg_db.finding_classification
2
- fields:
3
- name: "bowel_prep_boston"
4
- classification_types: ["bowel_prep"]
5
- name_de: "Boston Bowel Preparation Scale"
6
- name_en: "Boston Bowel Preparation Scale"
7
- examinations: ["colonoscopy"]
8
- findings:
9
- ["bowel_preparation_lc", "bowel_preparation_tc", "bowel_preparation_rc"]
10
- choices:
11
- [
12
- "bowel_prep_boston_0",
13
- "bowel_prep_boston_1",
14
- "bowel_prep_boston_2",
15
- "bowel_prep_boston_3",
16
- ]
17
-
18
- - model: endoreg_db.finding_classification
19
- fields:
20
- name: "bowel_prep_boston_simplified"
21
- classification_types: ["bowel_prep"]
22
- name_de: "Boston Bowel Preparation Scale"
23
- name_en: "Boston Bowel Preparation Scale"
24
- examinations: ["colonoscopy"]
25
- findings: ["bowel_preparation_simplified"]
26
- choices:
27
- [
28
- "bowel_prep_boston_0",
29
- "bowel_prep_boston_1",
30
- "bowel_prep_boston_2",
31
- "bowel_prep_boston_3",
32
- ]
33
-
34
- #Aronchick
35
- - model: endoreg_db.finding_classification
36
- fields:
37
- name: "bowel_prep_aronchick"
38
- classification_types: ["bowel_prep"]
39
- name_de: "Aronchick Bowel Preparation Scale"
40
- name_en: "Aronchick Bowel Preparation Scale"
41
- examinations: ["colonoscopy"]
42
- findings:
43
- ["bowel_preparation_lc", "bowel_preparation_tc", "bowel_preparation_rc"]
44
- choices:
45
- [
46
- "bowel_prep_aronchick_0",
47
- "bowel_prep_aronchick_1",
48
- "bowel_prep_aronchick_2",
49
- "bowel_prep_aronchick_3",
50
- ]
51
-
52
- # Screening Austria
53
- - model: endoreg_db.finding_classification
54
- fields:
55
- name: "bowel_prep_screening_austria"
56
- classification_types: ["bowel_prep"]
57
- name_de: "Darmvorbereitung Screening Österreich"
58
- name_en: "Bowel Preparation Screening Austria"
59
- examinations: ["colonoscopy_austria_screening"]
60
- findings: ["bowel_prep_screening_austria"]
61
- choices:
62
- [
63
- "bowel_prep_perfect",
64
- "bowel_prep_good",
65
- "bowel_prep_fair",
66
- "bowel_prep_poor",
67
- "bowel_prep_poor_in_rc_only",
68
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_jnet.yaml DELETED
@@ -1,22 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "colon_lesion_jnet"
5
- name_de: "Kolonläsion - JNET"
6
- name_en: "Colon lesion - JNET"
7
- classification_types: [
8
- "morphology",
9
- "colon_lesion_advanced_imaging",
10
- ]
11
- examinations: [
12
- "colonoscopy"
13
- ]
14
- findings: [
15
- "colon_polyp",
16
- ]
17
- choices: [
18
- "colon_lesion_jnet_1",
19
- "colon_lesion_jnet_2a",
20
- "colon_lesion_jnet_2b",
21
- "colon_lesion_jnet_3",
22
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_kudo.yaml DELETED
@@ -1,25 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "colon_lesion_kudo"
5
- classification_types: [
6
- "colon_lesion_advanced_imaging",
7
- "morphology"
8
- ]
9
- name_de: "Oberflächenklassifikation Kolonläsion"
10
- name_en: "Colon Lesion Surface Classification"
11
- examinations: [
12
- "colonoscopy"
13
- ]
14
- findings: [
15
- "colon_polyp",
16
- ]
17
- choices: [
18
- "colon_lesion_kudo_1",
19
- "colon_lesion_kudo_2",
20
- "colon_lesion_kudo_3s",
21
- "colon_lesion_kudo_3l",
22
- "colon_lesion_kudo_4",
23
- "colon_lesion_kudo_5i",
24
- "colon_lesion_kudo_5n",
25
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_circularity.yaml DELETED
@@ -1,20 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "colon_lesion_circularity_default"
5
- name_de: "Kolonläsion - Zirkularität"
6
- name_en: "Colon lesion - circularity"
7
- classification_types: [
8
- "colon_lesion_circularity",
9
- "morphology"
10
- ]
11
- examinations: [
12
- "colonoscopy"
13
- ]
14
- findings: [
15
- "colon_polyp",
16
- ]
17
- choices: [
18
- "colon_lesion_circularity_false",
19
- "colon_lesion_circularity_true"
20
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_planarity.yaml DELETED
@@ -1,24 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "colon_lesion_planarity_default"
5
- classification_types: [
6
- "colon_lesion_planarity",
7
- "morphology"
8
- ]
9
- name_de: "Planaritätsklassifikation Kolonläsion"
10
- name_en: "Colon Lesion Planarity Classification"
11
- examinations: [
12
- "colonoscopy"
13
- ]
14
- findings: [
15
- "colon_polyp",
16
- ]
17
- choices: [
18
- "colon_lesion_planarity_flat",
19
- "colon_lesion_planarity_flat_elevated",
20
- "colon_lesion_planarity_sessile",
21
- "colon_lesion_planarity_pedunculated",
22
- "colon_lesion_planarity_excavated",
23
- "colon_lesion_planarity_unknown"
24
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_size.yaml DELETED
@@ -1,68 +0,0 @@
1
- - model: endoreg_db.finding_classification
2
- fields:
3
- name: "colon_lesion_size_categorical"
4
- classification_types: [
5
- "colon_lesion_size",
6
- "morphology"
7
- ]
8
- name_de: "Größenklassifikation Kolonläsion (kategorisch)"
9
- name_en: "Colon Lesion Size Classification (categorical)"
10
- examinations: [
11
- "colonoscopy"
12
- ]
13
- findings: [
14
- "colon_polyp",
15
- "tumor",
16
- "erosion",
17
- "ulcer",
18
- "scar"
19
- ]
20
- choices: [
21
- "colon_lesion_size_categorical_diminutive",
22
- "colon_lesion_size_categorical_small",
23
- "colon_lesion_size_categorical_medium",
24
- "colon_lesion_size_categorical_large"
25
- ]
26
-
27
- - model: endoreg_db.finding_classification
28
- fields:
29
- name: "colon_lesion_size_mm"
30
- classification_types: [
31
- "colon_lesion_size",
32
- "morphology"
33
- ]
34
- name_de: "Größenklassifikation Kolonläsion (numerisch)"
35
- name_en: "Colon Lesion Size Classification (numerical)"
36
- examinations: [
37
- "colonoscopy"
38
- ]
39
- findings: [
40
- "colon_polyp",
41
- "tumor",
42
- "erosion",
43
- "ulcer",
44
- "scar"
45
- ]
46
- choices: [
47
- "colon_lesion_size_oval_mm"
48
- ]
49
-
50
- - model: endoreg_db.finding_classification
51
- fields:
52
- name: "colon_lesion_size_austria_categorical"
53
- classification_types: [
54
- "colon_lesion_size",
55
- "morphology"
56
- ]
57
- examinations: [
58
- "colonoscopy_austria_screening"
59
- ]
60
- findings: [
61
- "colon_polyp",
62
- ]
63
- choices: [
64
- "colon_lesion_size_austria_categorical_0_5",
65
- "colon_lesion_size_austria_categorical_6_9",
66
- "colon_lesion_size_austria_categorical_10_20",
67
- "colon_lesion_size_austria_categorical_21_x"
68
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_surface.yaml DELETED
@@ -1,20 +0,0 @@
1
- - model: endoreg_db.finding_classification
2
- fields:
3
- name: "colon_lesion_surface_intact_default"
4
- classification_types: [
5
- "colon_lesion_surface_intact",
6
- "morphology"
7
- ]
8
- name_de: "Oberflächenklassifikation Kolonläsion"
9
- name_en: "Colon Lesion Surface Classification"
10
- examinations: [
11
- "colonoscopy"
12
- ]
13
- findings: [
14
- "colon_polyp",
15
- ]
16
- choices: [
17
- "colon_lesion_surface_intact",
18
- "colon_lesion_surface_eroded",
19
- "colon_lesion_surface_ulcerated"
20
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_location.yaml DELETED
@@ -1,80 +0,0 @@
1
- - model: endoreg_db.finding_classification
2
- fields:
3
- name: "colonoscopy_location_default"
4
- name_de: "Koloskopie Standard"
5
- name_en: "Colonoscopy Default"
6
- classification_types: [
7
- "location",
8
- ]
9
- examinations: [
10
- "colonoscopy"
11
- ]
12
- finding_types: [
13
- "macroscopic"
14
- ]
15
- findings: [
16
- "colon_polyp",
17
- "tumor",
18
- "erosion",
19
- "ulcer",
20
- "scar"
21
- ]
22
- choices: [
23
- "terminal_ileum",
24
- "cecum",
25
- "ascending_colon",
26
- "right_flexure",
27
- "transverse_colon",
28
- "descending_colon",
29
- "sigmoid_colon",
30
- "rectum",
31
- "anal_canal"
32
- ]
33
-
34
- - model: endoreg_db.finding_classification
35
- fields:
36
- name: "colonoscopy_location_coarse"
37
- name_de: "Koloskopie Grob"
38
- name_en: "Colonoscopy Coarse"
39
- classification_types: [
40
- "location",
41
- ]
42
- examinations: [
43
- "colonoscopy"
44
- ]
45
- finding_types: [
46
- "macroscopic"
47
- ]
48
- findings: [
49
- "colon_polyp",
50
- # "tumor",
51
- # "erosion",
52
- # "ulcer",
53
- # "scar"
54
- ]
55
- choices: [
56
- "left_colon",
57
- "right_colon",
58
- "rectum"
59
- ]
60
-
61
- - model: endoreg_db.finding_classification
62
- fields:
63
- name: "colonoscopy_austria_screening_location"
64
- name_de: "Koloskopie Österreich Screening Lokalisation"
65
- name_en: "Colonoscopy Austria Screening Location"
66
- classification_types: [
67
- "location",
68
- ]
69
- examinations: [
70
- "colonoscopy_austria_screening"
71
- ]
72
- findings: [
73
- "colon_polyp",
74
- ]
75
- choices: [
76
- "left_colon",
77
- "right_colon",
78
- "sigmoid_colon",
79
- "rectum",
80
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_lst.yaml DELETED
@@ -1,21 +0,0 @@
1
- - model: endoreg_db.finding_classification
2
- fields:
3
- name: "colon_lesion_lst"
4
- classification_types: [
5
- "colon_lesion_shape",
6
- "morphology"
7
- ]
8
- name_de: "Oberflächenklassifikation Kolonläsion"
9
- name_en: "Colon Lesion Surface Classification"
10
- examinations: [
11
- "colonoscopy"
12
- ]
13
- findings: [
14
- "colon_polyp",
15
- ]
16
- choices: [
17
- "colon_lesion_lst_granular_homogeneous",
18
- "colon_lesion_lst_granular_nodular_mixed",
19
- "colon_lesion_lst_non_granular_flat_elevated",
20
- "colon_lesion_lst_non_granular_pseudodepressed"
21
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_nice.yaml DELETED
@@ -1,20 +0,0 @@
1
- - model: endoreg_db.finding_classification
2
- fields:
3
- name: "colon_lesion_nice"
4
- classification_types: [
5
- "colon_lesion_advanced_imaging",
6
- "morphology"
7
- ]
8
- name_de: "Kolonläsion - NICE"
9
- name_en: "Colon lesion - NICE"
10
- examinations: [
11
- "colonoscopy"
12
- ]
13
- findings: [
14
- "colon_polyp",
15
- ]
16
- choices: [
17
- "colon_lesion_NICE_type_1",
18
- "colon_lesion_NICE_type_2",
19
- "colon_lesion_NICE_type_3"
20
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_paris.yaml DELETED
@@ -1,26 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "colon_lesion_paris"
5
- classification_types: [
6
- "colon_lesion_shape",
7
- "morphology"
8
- ]
9
- name_de: "Formklassifikation Kolonläsion"
10
- name_en: "Colon Lesion Shape Classification"
11
- examinations: [
12
- "colonoscopy"
13
- ]
14
- findings: [
15
- "colon_polyp",
16
- ]
17
- choices: [
18
- "colon_paris_Is", # maps to colon_lesion_planarity_sessile
19
- "colon_paris_Ip", # colon_lesion_planarity_pedunculated
20
- "colon_paris_IIa",
21
- "colon_paris_IIb",
22
- "colon_paris_IIc",
23
- "colon_paris_III",
24
- "colon_paris_IIa_IIc",
25
- "colon_paris_IIb_IIc"
26
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_sano.yaml DELETED
@@ -1,22 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "colon_lesion_kudo"
5
- classification_types: [
6
- "colon_lesion_capillary_pattern",
7
- "morphology"
8
- ]
9
- name_de: "Oberflächenklassifikation Kolonläsion"
10
- name_en: "Colon Lesion Surface Classification"
11
- examinations: [
12
- "colonoscopy"
13
- ]
14
- findings: [
15
- "colon_polyp",
16
- ]
17
- choices: [
18
- "colon_lesion_sano_1",
19
- "colon_lesion_sano_2",
20
- "colon_lesion_sano_3a",
21
- "colon_lesion_sano_3b",
22
- ]
endoreg_db/data/_examples/finding_classification/colonoscopy_summary.yaml DELETED
@@ -1,53 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "colonoscopy_not_complete_reason"
5
- classification_types: []
6
- examinations: [
7
- "colonoscopy",
8
- "colonoscopy_austria_screening",
9
- ]
10
- findings: [
11
- "colonoscopy_complete",
12
- ]
13
- choices: [
14
- "colonoscopy_incomplete_insufficient_preparation",
15
- "colonoscopy_incomplete_complication",
16
- "colonoscopy_incomplete_pain",
17
- "colonoscopy_incomplete_stenosis",
18
- "colonoscopy_incomplete_other",
19
- ]
20
-
21
- - model: endoreg_db.finding_classification
22
- fields:
23
- name: "colonoscopy_austria_screening_findings_summary_worst"
24
- classification_types: []
25
- examinations: [
26
- "colonoscopy_austria_screening",
27
- ]
28
- findings: [
29
- "colonoscopy_austria_screening_findings_summary",
30
- ]
31
- choices: [
32
- "colonoscopy_worst_finding_colon_cancer",
33
- "colonoscopy_worst_finding_other",
34
- "colonoscopy_worst_finding_polyp",
35
- "colonoscopy_worst_finding_rectum_cancer",
36
- ]
37
-
38
- - model: endoreg_db.finding_classification
39
- fields:
40
- name: "colonoscopy_screening_outcome_overall"
41
- classification_types: []
42
- examinations: [
43
- "colonoscopy_austria_screening",
44
- ]
45
- findings: [
46
- "colonoscopy_austria_screening_outcome",
47
- ]
48
- choices: [
49
- "outcome_restitutio_ad_integrum",
50
- "outcome_death",
51
- "outcome_unknown",
52
- "outcome_lasting_disability",
53
- ]
endoreg_db/data/_examples/finding_classification/complication_generic.yaml DELETED
@@ -1,25 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "complication_generic_type"
5
- classification_types: []
6
- examinations: [
7
- "gastroscopy",
8
- "endosonography_upper_gi",
9
- "endosonography_lower_gi",
10
- "ercp",
11
- "small_bowel_endoscopy",
12
- "capsule_endoscopy",
13
- "percutaneous_transhepatic_biliary_drainage",
14
- "colonoscopy",
15
- "colonoscopy_austria_screening",
16
- ]
17
- findings: [
18
- "complication",
19
- ]
20
- choices: [
21
- "complication_generic_type_cardiorespiratory",
22
- "complication_generic_type_bleeding",
23
- "complication_generic_type_perforation",
24
- "complication_generic_type_other",
25
- ]
endoreg_db/data/_examples/finding_classification/examination_setting_generic.yaml DELETED
@@ -1,40 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "examination_setting_generic_location"
5
- classification_types: []
6
- examinations: [
7
- "gastroscopy",
8
- "endosonography_upper_gi",
9
- "endosonography_lower_gi",
10
- "ercp",
11
- "small_bowel_endoscopy",
12
- "capsule_endoscopy",
13
- "percutaneous_transhepatic_biliary_drainage",
14
- "colonoscopy",
15
- ]
16
- findings: [
17
- "examination_setting",
18
- ]
19
- choices: [
20
- "examination_setting_generic_location_inpatient",
21
- "examination_setting_generic_location_outpatient",
22
- ]
23
-
24
-
25
- - model: endoreg_db.finding_classification
26
- fields:
27
- name: "colonoscopy_austria_screening_final_examination_setting"
28
- classification_types: []
29
- examinations: [
30
- "colonoscopy_austria_screening",
31
- ]
32
- findings: [
33
- "examination_setting",
34
- ]
35
- choices: [
36
- "examination_setting_generic_location_inpatient",
37
- "examination_setting_generic_location_outpatient",
38
- "examination_setting_operative",
39
- "examination_setting_conservative"
40
- ]
endoreg_db/data/_examples/finding_classification/histology_colo.yaml DELETED
@@ -1,51 +0,0 @@
1
- - model: endoreg_db.finding_classification
2
- fields:
3
- name: "colonoscopy_polyp_histology"
4
- classification_types: []
5
- examinations: [
6
- "colonoscopy",
7
- "colonoscopy_austria_screening",
8
- ]
9
- findings: [
10
- "colon_polyp",
11
- ]
12
- choices: [
13
- "histology_polyp_hyperplastic",
14
- "histology_polyp_adenoma_tubular",
15
- "histology_polyp_adenoma_tubulovillous",
16
- "histology_polyp_adenoma_villous",
17
- "histology_polyp_sessile_serrated_lesion"
18
- ]
19
-
20
- - model: endoreg_db.finding_classification_choice
21
- fields:
22
- name: "colonoscopy_polyp_histology_dysplasia"
23
- classification_types: []
24
- examinations: [
25
- "colonoscopy",
26
- "colonoscopy_austria_screening",
27
- ]
28
- findings: [
29
- "colon_polyp",
30
- ]
31
- choices: [
32
- "histology_dysplasia_none",
33
- "histology_dysplasia_low_grade",
34
- "histology_dysplasia_high_grade",
35
- ]
36
-
37
- - model: endoreg_db.finding_classification
38
- fields:
39
- name: "colonoscopy_histology_dignity"
40
- classification_types: []
41
- examinations: [
42
- "colonoscopy",
43
- "colonoscopy_austria_screening",
44
- ]
45
- findings: [
46
- "colon_polyp",
47
- ]
48
- choices: [
49
- "histology_dignity_benign",
50
- "histology_dignity_malign",
51
- ]
endoreg_db/data/_examples/finding_classification/intervention_required.yaml DELETED
@@ -1,26 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "intervention_required"
5
- classification_types: []
6
- examinations: [
7
- "gastroscopy",
8
- "endosonography_upper_gi",
9
- "endosonography_lower_gi",
10
- "ercp",
11
- "small_bowel_endoscopy",
12
- "capsule_endoscopy",
13
- "percutaneous_transhepatic_biliary_drainage",
14
- "colonoscopy",
15
- "colonoscopy_austria_screening",
16
- ]
17
- findings: [
18
- "colon_polyp",
19
- "post-intervention-wound",
20
- "ulcer",
21
-
22
- ]
23
- choices: [
24
- "yes",
25
- "no",
26
- ]
endoreg_db/data/_examples/finding_classification/medication_related.yaml DELETED
@@ -1,23 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "sedation_performed"
5
- classification_types: []
6
- examinations: [
7
- "gastroscopy",
8
- "endosonography_upper_gi",
9
- "endosonography_lower_gi",
10
- "ercp",
11
- "small_bowel_endoscopy",
12
- "capsule_endoscopy",
13
- "percutaneous_transhepatic_biliary_drainage",
14
- "colonoscopy",
15
- "colonoscopy_austria_screening",
16
- ]
17
- findings: [
18
- "sedation",
19
- ]
20
- choices: [
21
- "yes",
22
- "no",
23
- ]
endoreg_db/data/_examples/finding_classification/visualized.yaml DELETED
@@ -1,33 +0,0 @@
1
-
2
- - model: endoreg_db.finding_classification
3
- fields:
4
- name: "visualized"
5
- classification_types: []
6
- examinations: [
7
- "gastroscopy",
8
- "endosonography_upper_gi",
9
- "endosonography_lower_gi",
10
- "ercp",
11
- "small_bowel_endoscopy",
12
- "capsule_endoscopy",
13
- "percutaneous_transhepatic_biliary_drainage",
14
- "colonoscopy",
15
- "colonoscopy_austria_screening",
16
- ]
17
- findings: [
18
- "cecum",
19
- "terminal_ileum",
20
- "ileocecal_valve",
21
- "ascending_colon",
22
- "right_flexure",
23
- "transverse_colon",
24
- "left_flexure",
25
- "descending_colon",
26
- "sigmoid_colon",
27
- "rectum",
28
- "rectum_anus",
29
- ]
30
- choices: [
31
- "yes",
32
- "no",
33
- ]