endoreg-db 0.8.8.0__py3-none-any.whl → 0.8.9.2__py3-none-any.whl

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  1. endoreg_db/data/__init__.py +22 -8
  2. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +0 -1
  3. endoreg_db/data/examination/examinations/data.yaml +114 -14
  4. endoreg_db/data/examination/time-type/data.yaml +0 -3
  5. endoreg_db/data/examination_indication/endoscopy.yaml +108 -173
  6. endoreg_db/data/examination_indication_classification/endoscopy.yaml +0 -70
  7. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +33 -37
  8. endoreg_db/data/finding/00_generic.yaml +35 -0
  9. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  10. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  11. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  12. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  13. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  14. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  15. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  16. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  17. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  18. endoreg_db/data/finding_classification/{colonoscopy_bowel_preparation.yaml → 02_colonoscopy_baseline.yaml} +35 -20
  19. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  20. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  21. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  22. endoreg_db/data/finding_classification_choice/{yes_no_na.yaml → 00_generic.yaml} +5 -1
  23. endoreg_db/data/finding_classification_choice/{examination_setting_generic_types.yaml → 00_generic_baseline.yaml} +10 -2
  24. endoreg_db/data/finding_classification_choice/{complication_generic_types.yaml → 00_generic_complication.yaml} +1 -1
  25. endoreg_db/data/finding_classification_choice/{histology.yaml → 00_generic_histology.yaml} +1 -4
  26. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  27. endoreg_db/data/finding_classification_choice/{bowel_preparation.yaml → 02_colonoscopy_bowel_preparation.yaml} +1 -30
  28. endoreg_db/data/{_examples/finding_classification_choice/colonoscopy_not_complete_reason.yaml → finding_classification_choice/02_colonoscopy_generic.yaml} +1 -1
  29. endoreg_db/data/finding_classification_choice/{histology_polyp.yaml → 02_colonoscopy_histology.yaml} +1 -1
  30. endoreg_db/data/{_examples/finding_classification_choice/colonoscopy_location.yaml → finding_classification_choice/02_colonoscopy_location.yaml} +23 -4
  31. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  32. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  33. endoreg_db/data/{_examples/finding_classification_choice/colon_lesion_paris.yaml → finding_classification_choice/02_colonoscopy_polyp_morphology.yaml} +26 -8
  34. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  35. endoreg_db/data/finding_classification_type/{colonoscopy_basic.yaml → 00_generic.yaml} +18 -13
  36. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  37. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  38. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  39. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  40. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  41. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  42. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  43. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  44. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  45. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  46. endoreg_db/data/finding_type/data.yaml +8 -12
  47. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  48. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  49. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +0 -2
  50. endoreg_db/data/requirement_set/90_coloreg.yaml +20 -8
  51. endoreg_db/exceptions.py +0 -1
  52. endoreg_db/forms/examination_form.py +1 -1
  53. endoreg_db/helpers/data_loader.py +124 -52
  54. endoreg_db/helpers/default_objects.py +116 -81
  55. endoreg_db/import_files/__init__.py +27 -0
  56. endoreg_db/import_files/context/__init__.py +7 -0
  57. endoreg_db/import_files/context/default_sensitive_meta.py +81 -0
  58. endoreg_db/import_files/context/ensure_center.py +17 -0
  59. endoreg_db/import_files/context/file_lock.py +66 -0
  60. endoreg_db/import_files/context/import_context.py +43 -0
  61. endoreg_db/import_files/context/validate_directories.py +56 -0
  62. endoreg_db/import_files/file_storage/__init__.py +15 -0
  63. endoreg_db/import_files/file_storage/create_report_file.py +76 -0
  64. endoreg_db/import_files/file_storage/create_video_file.py +75 -0
  65. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +39 -0
  66. endoreg_db/import_files/file_storage/state_management.py +496 -0
  67. endoreg_db/import_files/file_storage/storage.py +36 -0
  68. endoreg_db/import_files/import_service.md +26 -0
  69. endoreg_db/import_files/processing/__init__.py +11 -0
  70. endoreg_db/import_files/processing/report_processing/report_anonymization.py +94 -0
  71. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  72. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  73. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  74. endoreg_db/import_files/pseudonymization/k_anonymity.py +182 -0
  75. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +128 -0
  76. endoreg_db/import_files/pseudonymization/pseudonymize.py +0 -0
  77. endoreg_db/import_files/report_import_service.py +141 -0
  78. endoreg_db/import_files/video_import_service.py +150 -0
  79. endoreg_db/management/commands/import_report.py +130 -65
  80. endoreg_db/management/commands/import_video_with_classification.py +1 -1
  81. endoreg_db/management/commands/load_ai_model_data.py +5 -5
  82. endoreg_db/management/commands/load_ai_model_label_data.py +9 -7
  83. endoreg_db/management/commands/load_base_db_data.py +5 -134
  84. endoreg_db/management/commands/load_contraindication_data.py +14 -16
  85. endoreg_db/management/commands/load_disease_classification_choices_data.py +15 -18
  86. endoreg_db/management/commands/load_disease_classification_data.py +15 -18
  87. endoreg_db/management/commands/load_disease_data.py +25 -28
  88. endoreg_db/management/commands/load_endoscope_data.py +20 -27
  89. endoreg_db/management/commands/load_event_data.py +14 -16
  90. endoreg_db/management/commands/load_examination_data.py +31 -44
  91. endoreg_db/management/commands/load_examination_indication_data.py +20 -21
  92. endoreg_db/management/commands/load_finding_data.py +52 -80
  93. endoreg_db/management/commands/load_information_source.py +21 -23
  94. endoreg_db/management/commands/load_lab_value_data.py +17 -26
  95. endoreg_db/management/commands/load_medication_data.py +13 -12
  96. endoreg_db/management/commands/load_organ_data.py +15 -19
  97. endoreg_db/management/commands/load_pdf_type_data.py +19 -18
  98. endoreg_db/management/commands/load_profession_data.py +14 -17
  99. endoreg_db/management/commands/load_qualification_data.py +20 -23
  100. endoreg_db/management/commands/load_report_reader_flag_data.py +17 -19
  101. endoreg_db/management/commands/load_requirement_data.py +14 -20
  102. endoreg_db/management/commands/load_risk_data.py +7 -6
  103. endoreg_db/management/commands/load_shift_data.py +20 -23
  104. endoreg_db/management/commands/load_tag_data.py +8 -11
  105. endoreg_db/management/commands/load_unit_data.py +17 -19
  106. endoreg_db/management/commands/start_filewatcher.py +46 -37
  107. endoreg_db/management/commands/validate_video_files.py +1 -5
  108. endoreg_db/migrations/0001_initial.py +1360 -1812
  109. endoreg_db/models/administration/person/patient/patient.py +72 -46
  110. endoreg_db/models/label/__init__.py +2 -2
  111. endoreg_db/models/label/annotation/video_segmentation_annotation.py +18 -26
  112. endoreg_db/models/label/label_video_segment/label_video_segment.py +23 -1
  113. endoreg_db/models/media/pdf/raw_pdf.py +136 -64
  114. endoreg_db/models/media/pdf/report_reader/report_reader_config.py +34 -10
  115. endoreg_db/models/media/processing_history/__init__.py +5 -0
  116. endoreg_db/models/media/processing_history/processing_history.py +96 -0
  117. endoreg_db/models/media/video/create_from_file.py +101 -31
  118. endoreg_db/models/media/video/video_file.py +125 -105
  119. endoreg_db/models/media/video/video_file_io.py +31 -26
  120. endoreg_db/models/medical/contraindication/README.md +1 -0
  121. endoreg_db/models/medical/examination/examination.py +28 -8
  122. endoreg_db/models/medical/examination/examination_indication.py +13 -79
  123. endoreg_db/models/medical/examination/examination_time.py +8 -3
  124. endoreg_db/models/medical/finding/finding.py +5 -12
  125. endoreg_db/models/medical/finding/finding_classification.py +18 -37
  126. endoreg_db/models/medical/finding/finding_intervention.py +7 -9
  127. endoreg_db/models/medical/hardware/endoscope.py +6 -0
  128. endoreg_db/models/medical/patient/medication_examples.py +5 -1
  129. endoreg_db/models/medical/patient/patient_finding.py +1 -1
  130. endoreg_db/models/metadata/pdf_meta.py +22 -10
  131. endoreg_db/models/metadata/sensitive_meta.py +3 -0
  132. endoreg_db/models/metadata/sensitive_meta_logic.py +200 -124
  133. endoreg_db/models/other/information_source.py +27 -6
  134. endoreg_db/models/report/__init__.py +0 -0
  135. endoreg_db/models/report/images.py +0 -0
  136. endoreg_db/models/report/report.py +6 -0
  137. endoreg_db/models/requirement/requirement.py +59 -399
  138. endoreg_db/models/requirement/requirement_operator.py +86 -98
  139. endoreg_db/models/state/audit_ledger.py +4 -5
  140. endoreg_db/models/state/raw_pdf.py +69 -30
  141. endoreg_db/models/state/video.py +65 -49
  142. endoreg_db/models/upload_job.py +33 -9
  143. endoreg_db/models/utils.py +27 -23
  144. endoreg_db/queries/__init__.py +3 -1
  145. endoreg_db/schemas/examination_evaluation.py +1 -1
  146. endoreg_db/serializers/__init__.py +2 -8
  147. endoreg_db/serializers/label_video_segment/label_video_segment.py +2 -29
  148. endoreg_db/serializers/meta/__init__.py +1 -6
  149. endoreg_db/serializers/misc/sensitive_patient_data.py +50 -26
  150. endoreg_db/serializers/patient_examination/patient_examination.py +3 -3
  151. endoreg_db/serializers/pdf/anony_text_validation.py +39 -23
  152. endoreg_db/serializers/video/video_file_list.py +65 -34
  153. endoreg_db/services/__old/pdf_import.py +1487 -0
  154. endoreg_db/services/__old/video_import.py +1306 -0
  155. endoreg_db/services/anonymization.py +63 -26
  156. endoreg_db/services/lookup_service.py +28 -28
  157. endoreg_db/services/lookup_store.py +2 -2
  158. endoreg_db/services/pdf_import.py +0 -1480
  159. endoreg_db/services/report_import.py +10 -0
  160. endoreg_db/services/video_import.py +6 -1165
  161. endoreg_db/tasks/upload_tasks.py +79 -70
  162. endoreg_db/tasks/video_ingest.py +8 -4
  163. endoreg_db/urls/__init__.py +0 -14
  164. endoreg_db/urls/ai.py +32 -0
  165. endoreg_db/urls/media.py +21 -24
  166. endoreg_db/utils/dataloader.py +87 -57
  167. endoreg_db/utils/paths.py +110 -46
  168. endoreg_db/utils/pipelines/Readme.md +1 -1
  169. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +97 -0
  170. endoreg_db/utils/video/ffmpeg_wrapper.py +217 -52
  171. endoreg_db/views/__init__.py +85 -173
  172. endoreg_db/views/ai/__init__.py +8 -0
  173. endoreg_db/views/ai/label.py +155 -0
  174. endoreg_db/views/anonymization/media_management.py +8 -7
  175. endoreg_db/views/anonymization/overview.py +97 -68
  176. endoreg_db/views/anonymization/validate.py +25 -21
  177. endoreg_db/views/media/__init__.py +5 -20
  178. endoreg_db/views/media/pdf_media.py +109 -65
  179. endoreg_db/views/media/sensitive_metadata.py +163 -148
  180. endoreg_db/views/meta/__init__.py +0 -8
  181. endoreg_db/views/misc/__init__.py +1 -7
  182. endoreg_db/views/misc/upload_views.py +94 -93
  183. endoreg_db/views/report/__init__.py +7 -0
  184. endoreg_db/views/{pdf → report}/reimport.py +45 -24
  185. endoreg_db/views/{pdf/pdf_stream.py → report/report_stream.py} +40 -32
  186. endoreg_db/views/requirement/lookup_store.py +22 -90
  187. endoreg_db/views/video/__init__.py +23 -22
  188. endoreg_db/views/video/correction.py +201 -172
  189. endoreg_db/views/video/reimport.py +1 -1
  190. endoreg_db/views/{media/video_segments.py → video/segments_crud.py} +75 -37
  191. endoreg_db/views/video/{video_meta.py → video_meta_stats.py} +2 -2
  192. endoreg_db/views/video/video_stream.py +7 -8
  193. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/METADATA +2 -2
  194. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/RECORD +217 -335
  195. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/WHEEL +1 -1
  196. endoreg_db/data/_examples/disease.yaml +0 -55
  197. endoreg_db/data/_examples/disease_classification.yaml +0 -13
  198. endoreg_db/data/_examples/disease_classification_choice.yaml +0 -62
  199. endoreg_db/data/_examples/event.yaml +0 -64
  200. endoreg_db/data/_examples/examination.yaml +0 -72
  201. endoreg_db/data/_examples/finding/anatomy_colon.yaml +0 -128
  202. endoreg_db/data/_examples/finding/colonoscopy.yaml +0 -40
  203. endoreg_db/data/_examples/finding/colonoscopy_bowel_prep.yaml +0 -56
  204. endoreg_db/data/_examples/finding/complication.yaml +0 -16
  205. endoreg_db/data/_examples/finding/data.yaml +0 -105
  206. endoreg_db/data/_examples/finding/examination_setting.yaml +0 -16
  207. endoreg_db/data/_examples/finding/medication_related.yaml +0 -18
  208. endoreg_db/data/_examples/finding/outcome.yaml +0 -12
  209. endoreg_db/data/_examples/finding_classification/colonoscopy_bowel_preparation.yaml +0 -68
  210. endoreg_db/data/_examples/finding_classification/colonoscopy_jnet.yaml +0 -22
  211. endoreg_db/data/_examples/finding_classification/colonoscopy_kudo.yaml +0 -25
  212. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_circularity.yaml +0 -20
  213. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_planarity.yaml +0 -24
  214. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_size.yaml +0 -68
  215. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_surface.yaml +0 -20
  216. endoreg_db/data/_examples/finding_classification/colonoscopy_location.yaml +0 -80
  217. endoreg_db/data/_examples/finding_classification/colonoscopy_lst.yaml +0 -21
  218. endoreg_db/data/_examples/finding_classification/colonoscopy_nice.yaml +0 -20
  219. endoreg_db/data/_examples/finding_classification/colonoscopy_paris.yaml +0 -26
  220. endoreg_db/data/_examples/finding_classification/colonoscopy_sano.yaml +0 -22
  221. endoreg_db/data/_examples/finding_classification/colonoscopy_summary.yaml +0 -53
  222. endoreg_db/data/_examples/finding_classification/complication_generic.yaml +0 -25
  223. endoreg_db/data/_examples/finding_classification/examination_setting_generic.yaml +0 -40
  224. endoreg_db/data/_examples/finding_classification/histology_colo.yaml +0 -51
  225. endoreg_db/data/_examples/finding_classification/intervention_required.yaml +0 -26
  226. endoreg_db/data/_examples/finding_classification/medication_related.yaml +0 -23
  227. endoreg_db/data/_examples/finding_classification/visualized.yaml +0 -33
  228. endoreg_db/data/_examples/finding_classification_choice/bowel_preparation.yaml +0 -78
  229. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_circularity_default.yaml +0 -32
  230. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_jnet.yaml +0 -15
  231. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_kudo.yaml +0 -23
  232. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_lst.yaml +0 -15
  233. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_nice.yaml +0 -17
  234. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_planarity_default.yaml +0 -49
  235. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_sano.yaml +0 -14
  236. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_surface_intact_default.yaml +0 -36
  237. endoreg_db/data/_examples/finding_classification_choice/colonoscopy_size.yaml +0 -82
  238. endoreg_db/data/_examples/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +0 -15
  239. endoreg_db/data/_examples/finding_classification_choice/complication_generic_types.yaml +0 -15
  240. endoreg_db/data/_examples/finding_classification_choice/examination_setting_generic_types.yaml +0 -15
  241. endoreg_db/data/_examples/finding_classification_choice/histology.yaml +0 -24
  242. endoreg_db/data/_examples/finding_classification_choice/histology_polyp.yaml +0 -20
  243. endoreg_db/data/_examples/finding_classification_choice/outcome.yaml +0 -19
  244. endoreg_db/data/_examples/finding_classification_choice/yes_no_na.yaml +0 -11
  245. endoreg_db/data/_examples/finding_classification_type/colonoscopy_basic.yaml +0 -48
  246. endoreg_db/data/_examples/finding_intervention/endoscopy.yaml +0 -43
  247. endoreg_db/data/_examples/finding_intervention/endoscopy_colonoscopy.yaml +0 -168
  248. endoreg_db/data/_examples/finding_intervention/endoscopy_egd.yaml +0 -128
  249. endoreg_db/data/_examples/finding_intervention/endoscopy_ercp.yaml +0 -32
  250. endoreg_db/data/_examples/finding_intervention/endoscopy_eus_lower.yaml +0 -9
  251. endoreg_db/data/_examples/finding_intervention/endoscopy_eus_upper.yaml +0 -36
  252. endoreg_db/data/_examples/finding_intervention_type/endoscopy.yaml +0 -15
  253. endoreg_db/data/_examples/finding_type/data.yaml +0 -43
  254. endoreg_db/data/_examples/requirement/age.yaml +0 -26
  255. endoreg_db/data/_examples/requirement/gender.yaml +0 -25
  256. endoreg_db/data/_examples/requirement_set/01_endoscopy_generic.yaml +0 -48
  257. endoreg_db/data/_examples/requirement_set/colonoscopy_austria_screening.yaml +0 -57
  258. endoreg_db/data/_examples/requirement_set/endoscopy_bleeding_risk.yaml +0 -52
  259. endoreg_db/data/_examples/yaml_examples.xlsx +0 -0
  260. endoreg_db/data/finding/anatomy_colon.yaml +0 -128
  261. endoreg_db/data/finding/colonoscopy.yaml +0 -40
  262. endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +0 -56
  263. endoreg_db/data/finding/complication.yaml +0 -16
  264. endoreg_db/data/finding/data.yaml +0 -105
  265. endoreg_db/data/finding/examination_setting.yaml +0 -16
  266. endoreg_db/data/finding/medication_related.yaml +0 -18
  267. endoreg_db/data/finding/outcome.yaml +0 -12
  268. endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +0 -22
  269. endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +0 -25
  270. endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +0 -20
  271. endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +0 -24
  272. endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +0 -38
  273. endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +0 -20
  274. endoreg_db/data/finding_classification/colonoscopy_location.yaml +0 -49
  275. endoreg_db/data/finding_classification/colonoscopy_lst.yaml +0 -21
  276. endoreg_db/data/finding_classification/colonoscopy_nice.yaml +0 -20
  277. endoreg_db/data/finding_classification/colonoscopy_paris.yaml +0 -26
  278. endoreg_db/data/finding_classification/colonoscopy_sano.yaml +0 -22
  279. endoreg_db/data/finding_classification/colonoscopy_summary.yaml +0 -53
  280. endoreg_db/data/finding_classification/complication_generic.yaml +0 -25
  281. endoreg_db/data/finding_classification/examination_setting_generic.yaml +0 -40
  282. endoreg_db/data/finding_classification/histology_colo.yaml +0 -43
  283. endoreg_db/data/finding_classification/intervention_required.yaml +0 -26
  284. endoreg_db/data/finding_classification/medication_related.yaml +0 -23
  285. endoreg_db/data/finding_classification/visualized.yaml +0 -33
  286. endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +0 -32
  287. endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +0 -15
  288. endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +0 -23
  289. endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +0 -15
  290. endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +0 -17
  291. endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +0 -57
  292. endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +0 -49
  293. endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +0 -14
  294. endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +0 -36
  295. endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +0 -229
  296. endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +0 -19
  297. endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +0 -82
  298. endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +0 -15
  299. endoreg_db/data/finding_classification_choice/outcome.yaml +0 -19
  300. endoreg_db/data/finding_intervention/endoscopy.yaml +0 -43
  301. endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +0 -168
  302. endoreg_db/data/finding_intervention/endoscopy_egd.yaml +0 -128
  303. endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +0 -32
  304. endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +0 -9
  305. endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +0 -36
  306. endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +0 -79
  307. endoreg_db/data/requirement/age.yaml +0 -26
  308. endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +0 -45
  309. endoreg_db/data/requirement/disease_cardiovascular.yaml +0 -79
  310. endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +0 -41
  311. endoreg_db/data/requirement/disease_hepatology.yaml +0 -12
  312. endoreg_db/data/requirement/disease_misc.yaml +0 -12
  313. endoreg_db/data/requirement/disease_renal.yaml +0 -96
  314. endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +0 -59
  315. endoreg_db/data/requirement/event_cardiology.yaml +0 -251
  316. endoreg_db/data/requirement/event_requirements.yaml +0 -145
  317. endoreg_db/data/requirement/finding_colon_polyp.yaml +0 -50
  318. endoreg_db/data/requirement/gender.yaml +0 -25
  319. endoreg_db/data/requirement/lab_value.yaml +0 -441
  320. endoreg_db/data/requirement/medication.yaml +0 -93
  321. endoreg_db/data/requirement_operator/age.yaml +0 -13
  322. endoreg_db/data/requirement_operator/lab_operators.yaml +0 -129
  323. endoreg_db/data/requirement_operator/model_operators.yaml +0 -96
  324. endoreg_db/management/commands/init_default_ai_model.py +0 -112
  325. endoreg_db/management/commands/reset_celery_schedule.py +0 -9
  326. endoreg_db/management/commands/validate_video.py +0 -204
  327. endoreg_db/migrations/0002_requirementset_depends_on.py +0 -18
  328. endoreg_db/migrations/_old/0001_initial.py +0 -1857
  329. endoreg_db/migrations/_old/0002_add_video_correction_models.py +0 -52
  330. endoreg_db/migrations/_old/0003_add_center_display_name.py +0 -30
  331. endoreg_db/migrations/_old/0004_employee_city_employee_post_code_employee_street_and_more.py +0 -68
  332. endoreg_db/migrations/_old/0004_remove_casetemplate_rules_and_more.py +0 -77
  333. endoreg_db/migrations/_old/0005_merge_20251111_1003.py +0 -14
  334. endoreg_db/migrations/_old/0006_sensitivemeta_anonymized_text_and_more.py +0 -68
  335. endoreg_db/migrations/_old/0007_remove_rule_attribute_dtype_remove_rule_rule_type_and_more.py +0 -89
  336. endoreg_db/migrations/_old/0008_remove_event_event_classification_and_more.py +0 -27
  337. endoreg_db/migrations/_old/0009_alter_modelmeta_options_and_more.py +0 -21
  338. endoreg_db/renames.yml +0 -8
  339. endoreg_db/serializers/_old/raw_pdf_meta_validation.py +0 -223
  340. endoreg_db/serializers/_old/raw_video_meta_validation.py +0 -179
  341. endoreg_db/serializers/_old/video.py +0 -71
  342. endoreg_db/serializers/meta/pdf_file_meta_extraction.py +0 -115
  343. endoreg_db/serializers/meta/report_meta.py +0 -53
  344. endoreg_db/serializers/report/__init__.py +0 -9
  345. endoreg_db/serializers/report/mixins.py +0 -45
  346. endoreg_db/serializers/report/report.py +0 -105
  347. endoreg_db/serializers/report/report_list.py +0 -22
  348. endoreg_db/serializers/report/secure_file_url.py +0 -26
  349. endoreg_db/services/requirements_object.py +0 -147
  350. endoreg_db/services/storage_aware_video_processor.py +0 -370
  351. endoreg_db/urls/files.py +0 -6
  352. endoreg_db/urls/label_video_segment_validate.py +0 -33
  353. endoreg_db/urls/label_video_segments.py +0 -46
  354. endoreg_db/views/label/__init__.py +0 -5
  355. endoreg_db/views/label/label.py +0 -15
  356. endoreg_db/views/label_video_segment/__init__.py +0 -16
  357. endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +0 -44
  358. endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +0 -50
  359. endoreg_db/views/label_video_segment/label_video_segment.py +0 -77
  360. endoreg_db/views/label_video_segment/label_video_segment_by_label.py +0 -174
  361. endoreg_db/views/label_video_segment/label_video_segment_detail.py +0 -73
  362. endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +0 -46
  363. endoreg_db/views/label_video_segment/validate.py +0 -226
  364. endoreg_db/views/media/segments.py +0 -71
  365. endoreg_db/views/meta/available_files_list.py +0 -146
  366. endoreg_db/views/meta/report_meta.py +0 -53
  367. endoreg_db/views/meta/sensitive_meta_detail.py +0 -85
  368. endoreg_db/views/misc/secure_file_serving_view.py +0 -80
  369. endoreg_db/views/misc/secure_file_url_view.py +0 -84
  370. endoreg_db/views/misc/secure_url_validate.py +0 -79
  371. endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +0 -164
  372. endoreg_db/views/patient_finding_location/__init__.py +0 -5
  373. endoreg_db/views/patient_finding_location/pfl_create.py +0 -70
  374. endoreg_db/views/patient_finding_morphology/__init__.py +0 -5
  375. endoreg_db/views/patient_finding_morphology/pfm_create.py +0 -70
  376. endoreg_db/views/pdf/__init__.py +0 -8
  377. endoreg_db/views/video/segmentation.py +0 -274
  378. endoreg_db/views/video/task_status.py +0 -49
  379. endoreg_db/views/video/timeline.py +0 -46
  380. endoreg_db/views/video/video_analyze.py +0 -52
  381. /endoreg_db/data/requirement/{colon_polyp_intervention.yaml → old/colon_polyp_intervention.yaml} +0 -0
  382. /endoreg_db/data/{_examples/requirement → requirement/old}/colonoscopy_baseline_austria.yaml +0 -0
  383. /endoreg_db/data/requirement/{coloreg_colon_polyp.yaml → old/coloreg_colon_polyp.yaml} +0 -0
  384. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_cardiovascular.yaml +0 -0
  385. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_classification_choice_cardiovascular.yaml +0 -0
  386. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_hepatology.yaml +0 -0
  387. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_misc.yaml +0 -0
  388. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_renal.yaml +0 -0
  389. /endoreg_db/data/{_examples/requirement → requirement/old}/endoscopy_bleeding_risk.yaml +0 -0
  390. /endoreg_db/data/{_examples/requirement → requirement/old}/event_cardiology.yaml +0 -0
  391. /endoreg_db/data/{_examples/requirement → requirement/old}/event_requirements.yaml +0 -0
  392. /endoreg_db/data/{_examples/requirement → requirement/old}/finding_colon_polyp.yaml +0 -0
  393. /endoreg_db/{urls/sensitive_meta.py → data/requirement/old/gender.yaml} +0 -0
  394. /endoreg_db/data/{_examples/requirement → requirement/old}/lab_value.yaml +0 -0
  395. /endoreg_db/data/{_examples/requirement → requirement/old}/medication.yaml +0 -0
  396. /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/age.yaml +0 -0
  397. /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/lab_operators.yaml +0 -0
  398. /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/model_operators.yaml +0 -0
  399. /endoreg_db/{views/pdf/pdf_stream_views.py → import_files/pseudonymization/__init__.py} +0 -0
  400. /endoreg_db/utils/requirement_operator_logic/{lab_value_operators.py → _old/lab_value_operators.py} +0 -0
  401. /endoreg_db/utils/requirement_operator_logic/{model_evaluators.py → _old/model_evaluators.py} +0 -0
  402. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.9.2.dist-info}/licenses/LICENSE +0 -0
@@ -2,10 +2,9 @@
2
2
  ## Generic
3
3
  - model: endoreg_db.examination_indication
4
4
  fields:
5
- name: "colonoscopy"
5
+ name: "colonoscopy_generic"
6
6
  name_de: "Koloskopie"
7
7
  name_en: "Colonoscopy"
8
- examinations: ["colonoscopy"]
9
8
  description: "Colonoscopy without further specification"
10
9
 
11
10
  ## Colonoscopy elective
@@ -14,14 +13,13 @@
14
13
  name: "colonoscopy_screening"
15
14
  name_de: "Koloskopie (Screening)"
16
15
  name_en: "Colonoscopy (Screening)"
17
- examinations: ["colonoscopy"]
18
16
  description: "Colonoscopy for screening purposes"
19
17
  expected_interventions: # Many2Many to finding intervention
20
18
  [
21
- "colon_lesion_polypectomy_cold_snare",
22
- "colon_lesion_injection_liftup",
23
- "colon_lesion_biopsy",
24
- "colon_lesion_clip",
19
+ "endoscopy_cold_snare_resection_generic",
20
+ "endoscopy_injection_liftup",
21
+ "endoscopy_biopsy_grasper_generic",
22
+ "endoscopy_hemoclip_generic",
25
23
  ]
26
24
 
27
25
  - model: endoreg_db.examination_indication
@@ -29,16 +27,15 @@
29
27
  name: "colonoscopy_lesion_removal_small"
30
28
  name_de: "Koloskopie (Läsionsentfernung, klein (< 10 mm), elektiv)"
31
29
  name_en: "Colonoscopy (Lesion removal, small (< 10 mm), elective)"
32
- examinations: ["colonoscopy"]
33
30
  description: "Elective colonoscopy for removal of small lesions (< 10 mm)"
34
31
  expected_interventions:
35
32
  [
36
- "colon_lesion_polypectomy_cold_snare",
37
- "colon_lesion_polypectomy_hot_snare",
38
- "colon_lesion_injection_liftup",
39
- "colon_lesion_injection_vasoactive",
40
- "colon_lesion_biopsy",
41
- "colon_lesion_clip",
33
+ "endoscopy_cold_snare_resection_generic",
34
+ "endoscopy_diathermic_snare_resection_generic",
35
+ "endoscopy_injection_liftup",
36
+ "endoscopy_injection_vasoactive",
37
+ "endoscopy_biopsy_grasper_generic",
38
+ "endoscopy_hemoclip_generic",
42
39
  ]
43
40
 
44
41
  # colonoscopy_lesion_removal_emr
@@ -47,15 +44,14 @@
47
44
  name: "colonoscopy_lesion_removal_emr"
48
45
  name_de: "Koloskopie (Läsionsentfernung, EMR, elektiv)"
49
46
  name_en: "Colonoscopy (Lesion removal, EMR, elective)"
50
- examinations: ["colonoscopy"]
51
47
  description: "Elective colonoscopy for removal of lesions using EMR"
52
48
  expected_interventions:
53
49
  [
54
- "colon_lesion_emr",
55
- "colon_lesion_injection_vasoactive",
56
- "colon_lesion_injection_liftup",
57
- "colon_lesion_clip",
58
- "colon_lesion_over_the_scope_clip",
50
+ "endoscopy_emr_generic",
51
+ "endoscopy_injection_vasoactive",
52
+ "endoscopy_injection_liftup",
53
+ "endoscopy_hemoclip_generic",
54
+ "endoscopy_over_the_scope_clip_generic",
59
55
  ]
60
56
 
61
57
  - model: endoreg_db.examination_indication
@@ -63,17 +59,16 @@
63
59
  name: "colonoscopy_lesion_removal_large"
64
60
  name_de: "Koloskopie (Läsionsentfernung, groß (≥ 10 mm), elektiv)"
65
61
  name_en: "Colonoscopy (Lesion removal, large (≥ 10 mm), elective)"
66
- examinations: ["colonoscopy"]
67
62
  description: "Elective colonoscopy for removal of large lesions (≥ 10 mm)"
68
63
  expected_interventions:
69
64
  [
70
- "colon_lesion_injection_vasoactive",
71
- "colon_lesion_injection_liftup",
72
- "colon_lesion_clip",
73
- "colon_lesion_over_the_scope_clip",
74
- "colon_lesion_emr",
75
- "colon_lesion_esd",
76
- "colon_lesion_eftr",
65
+ "endoscopy_injection_vasoactive",
66
+ "endoscopy_injection_liftup",
67
+ "endoscopy_hemoclip_generic",
68
+ "endoscopy_over_the_scope_clip_generic",
69
+ "endoscopy_emr_generic",
70
+ "endoscopy_esd_generic",
71
+ "endoscopy_eftr_generic",
77
72
  ]
78
73
 
79
74
  ## Colonoscopy Acute
@@ -82,26 +77,24 @@
82
77
  name: "colonoscopy_diagnostic_acute_symptomatic"
83
78
  name_de: "Koloskopie (Diagnostik, akut-symptomatisch)"
84
79
  name_en: "Colonoscopy (Diagnostic, Acute Symptomatic)"
85
- examinations: ["colonoscopy"]
86
80
  description: "Colonoscopy for diagnostic purposes in acute symptomatic patients"
87
81
  expected_interventions:
88
- ["colon_lesion_clip", "colon_lesion_injection_vasoactive"]
82
+ ["endoscopy_hemoclip_generic", "endoscopy_injection_vasoactive"]
89
83
 
90
84
  # Gastroscopy
91
85
  - model: endoreg_db.examination_indication
92
86
  fields:
93
- name: "gastroscopy"
87
+ name: "gastroscopy_generic"
94
88
  name_de: "Gastroskopie"
95
89
  name_en: "Gastroscopy"
96
- examinations: ["gastroscopy"]
97
90
  description: "Gastroscopy without further specification"
98
91
  expected_interventions: # Many2Many to finding intervention
99
92
  [
100
- "egd_lesion_polypectomy_cold_snare",
101
- "egd_lesion_injection_liftup",
102
- "egd_lesion_biopsy",
103
- "egd_lesion_clip",
104
- "egd_lesion_over_the_scope_clip",
93
+ "endoscopy_cold_snare_resection_generic",
94
+ "endoscopy_injection_liftup",
95
+ "endoscopy_biopsy_grasper_generic",
96
+ "endoscopy_hemoclip_generic",
97
+ "endoscopy_over_the_scope_clip_generic",
105
98
  ]
106
99
 
107
100
  - model: endoreg_db.examination_indication
@@ -109,9 +102,8 @@
109
102
  name: "gastroscopy_baseline"
110
103
  name_de: "Gastroskopie (Basis)"
111
104
  name_en: "Gastroscopy (Baseline)"
112
- examinations: ["gastroscopy"]
113
105
  description: "Baseline gastroscopy"
114
- expected_interventions: ["egd_lesion_biopsy"]
106
+ expected_interventions: ["endoscopy_biopsy_grasper_generic"]
115
107
 
116
108
  ## Gastroscopy Acute
117
109
  - model: endoreg_db.examination_indication
@@ -119,10 +111,9 @@
119
111
  name: "gastroscopy_diagnostic_acute_symptomatic"
120
112
  name_de: "Gastroskopie (Diagnostik, akut-symptomatisch)"
121
113
  name_en: "Gastroscopy (Diagnostic, Acute Symptomatic)"
122
- examinations: ["gastroscopy"]
123
114
  description: "Gastroscopy for diagnostic purposes in acute symptomatic patients"
124
115
  expected_interventions: [
125
- "egd_hp_biopsy", # default
116
+ "endoscopy_biopsy_grasper_generic", # default
126
117
  ]
127
118
 
128
119
  - model: endoreg_db.examination_indication
@@ -130,15 +121,14 @@
130
121
  name: "gastroscopy_acute_bleeding"
131
122
  name_de: "Gastroskopie (akute Blutung)"
132
123
  name_en: "Gastroscopy (acute bleeding)"
133
- examinations: ["gastroscopy"]
134
124
  description: "Gastroscopy for acute bleeding"
135
125
  expected_interventions: [
136
- "egd_lesion_injection_vasoactive",
137
- "egd_lesion_clip", # default
138
- "egd_lesion_over_the_scope_clip",
139
- "egd_varice_band_ligation",
140
- "egd_varice_sclerotherapy",
141
- "egd_argon_plasma_coagulation",
126
+ "endoscopy_injection_vasoactive",
127
+ "endoscopy_hemoclip_generic", # default
128
+ "endoscopy_over_the_scope_clip_generic",
129
+ "endoscopy_rubber_band_ligation_generic",
130
+ "endoscopy_sclerotherapy_generic",
131
+ "endoscopy_ablation_argon_plasma_coagulation",
142
132
  ]
143
133
 
144
134
  ## Gastroscopy Elective
@@ -147,53 +137,49 @@
147
137
  name: "gastroscopy_diagnostic_elective"
148
138
  name_de: "Gastroskopie (Diagnostik, elektiv)"
149
139
  name_en: "Gastroscopy (Diagnostic, Elective)"
150
- examinations: ["gastroscopy"]
151
140
  description: "Gastroscopy for diagnostic purposes in elective patients"
152
- expected_interventions: ["egd_hp_biopsy"]
141
+ expected_interventions: ["endoscopy_biopsy_grasper_generic"]
153
142
 
154
143
  - model: endoreg_db.examination_indication
155
144
  fields:
156
145
  name: "gastroscopy_percutane_enterostomy"
157
146
  name_de: "Gastroskopie (perkutane Enterostomie)"
158
147
  name_en: "Gastroscopy (percutaneous enterostomy)"
159
- examinations: ["gastroscopy"]
160
148
  description: "Gastroscopy for percutaneous enterostomy"
161
149
  expected_interventions:
162
150
  [
163
151
  "egd_percutaneous_gastroenterostomy",
164
152
  "egd_percutaneous_jejunostomy",
165
- "egd_lesion_biopsy",
166
- "egd_clip",
153
+ "endoscopy_biopsy_grasper_generic",
154
+ "endoscopy_hemoclip_generic",
167
155
  ]
168
156
 
169
157
  - model: endoreg_db.examination_indication
170
158
  fields:
171
- name: "gastroscopy_therapeutic_varicosis_esophagus"
159
+ name: "gastroscopy_varicosis_therapeutic_esophagus"
172
160
  name_de: "Gastroskopie (Therapie, Varikosis Ösophagus, elektiv)"
173
161
  name_en: "Gastroscopy (Therapeutic, Varicosis Esophagus, elective)"
174
- examinations: ["gastroscopy"]
175
162
  description: "Elective gastroscopy for therapeutic purposes in elective patients with varicosis of the esophagus"
176
163
  expected_interventions:
177
164
  [
178
- "egd_varicosis_band_ligation",
179
- "egd_varicosis_sclerotherapy",
180
- "egd_injection_vasoactive",
181
- "egd_clip",
165
+ "endoscopy_rubber_band_ligation_generic",
166
+ "endoscopy_sclerotherapy_generic",
167
+ "endoscopy_injection_vasoactive",
168
+ "endoscopy_hemoclip_generic",
182
169
  ]
183
170
 
184
171
  - model: endoreg_db.examination_indication
185
172
  fields:
186
- name: "gastroscopy_therapeutic_varicosis_stomach"
173
+ name: "gastroscopy_varicosis_therapeutic_stomach"
187
174
  name_de: "Gastroskopie (Therapie, Varikosis Magen, elektiv)"
188
175
  name_en: "Gastroscopy (Therapeutic, Varicosis Stomach, elective)"
189
- examinations: ["gastroscopy"]
190
176
  description: "Elective gastroscopy for therapeutic purposes in elective patients with varicosis of the stomach"
191
177
  expected_interventions:
192
178
  [
193
- "egd_varicosis_band_ligation",
194
- "egd_clip",
195
- "egd_injection_varicosis",
196
- "egd_injection_vasoactive",
179
+ "endoscopy_rubber_band_ligation_generic",
180
+ "endoscopy_hemoclip_generic",
181
+ "endoscopy_sclerotherapy_generic",
182
+ "endoscopy_injection_vasoactive",
197
183
  ]
198
184
 
199
185
  - model: endoreg_db.examination_indication
@@ -201,14 +187,13 @@
201
187
  name: "gastroscopy_therapeutic_varicosis_intestine"
202
188
  name_de: "Gastroskopie (Therapie, Varikosis Darm, elektiv)"
203
189
  name_en: "Gastroscopy (Therapeutic, Varicosis Intestine, elective)"
204
- examinations: ["gastroscopy"]
205
190
  description: "Elective gastroscopy for therapeutic purposes in elective patients with varicosis of the intestine"
206
191
  expected_interventions:
207
192
  [
208
- "egd_varicosis_band_ligation",
209
- "egd_clip",
210
- "egd_injection_varicosis",
211
- "egd_injection_vasoactive",
193
+ "endoscopy_rubber_band_ligation_generic",
194
+ "endoscopy_hemoclip_generic",
195
+ "endoscopy_sclerotherapy_generic",
196
+ "endoscopy_injection_vasoactive",
212
197
  ]
213
198
 
214
199
  - model: endoreg_db.examination_indication
@@ -216,17 +201,16 @@
216
201
  name: "gastroscopy_lesion_removal_small"
217
202
  name_de: "Gastroskopie (Läsionsentfernung, klein (< 10 mm), elektiv)"
218
203
  name_en: "Gastroscopy (Lesion removal, small (< 10 mm), elective)"
219
- examinations: ["gastroscopy"]
220
204
  description: "Elective gastroscopy for removal of small lesions (< 10 mm)"
221
205
  expected_interventions:
222
206
  [
223
- "egd_lesion_polypectomy_cold_snare",
224
- "egd_lesion_polypectomy_hot_snare",
225
- "egd_lesion_polypectomy_forceps",
226
- "egd_lesion_injection_vasoactive",
227
- "egd_lesion_injection_liftup",
228
- "egd_lesion_clip",
229
- "egd_lesion_over_the_scope_clip",
207
+ "endoscopy_cold_snare_resection_generic",
208
+ "endoscopy_diathermic_snare_resection_generic",
209
+ "endoscopy_biopsy_foreceps_resection_generic",
210
+ "endoscopy_injection_vasoactive",
211
+ "endoscopy_injection_liftup",
212
+ "endoscopy_hemoclip_generic",
213
+ "endoscopy_over_the_scope_clip_generic",
230
214
  ]
231
215
 
232
216
  - model: endoreg_db.examination_indication
@@ -234,17 +218,16 @@
234
218
  name: "gastroscopy_lesion_removal_large"
235
219
  name_de: "Gastroskopie (Läsionsentfernung, groß (≥ 10 mm), elektiv)"
236
220
  name_en: "Gastroscopy (Lesion removal, large (≥ 10 mm), elective)"
237
- examinations: ["gastroscopy"]
238
221
  description: "Elective gastroscopy for removal of large lesions (≥ 10 mm)"
239
222
  expected_interventions:
240
223
  [
241
- "egd_lesion_injection_vasoactive",
242
- "egd_lesion_injection_liftup",
243
- "egd_lesion_clip",
244
- "egd_lesion_over_the_scope_clip",
245
- "egd_lesion_emr",
246
- "egd_lesion_esd",
247
- "egd_eftr",
224
+ "endoscopy_injection_vasoactive",
225
+ "endoscopy_injection_liftup",
226
+ "endoscopy_hemoclip_generic",
227
+ "endoscopy_over_the_scope_clip_generic",
228
+ "endoscopy_emr_generic",
229
+ "endoscopy_esd_generic",
230
+ "endoscopy_eftr_generic",
248
231
  "egd_poem",
249
232
  ]
250
233
 
@@ -253,31 +236,28 @@
253
236
  name: "gastroscopy_obstruction_generic"
254
237
  name_de: "Gastroskopie (Obstruktion / Dysphagie, generisch, elektiv)"
255
238
  name_en: "Gastroscopy (Obstruction / Dysphagia, generic, elective)"
256
- examinations: ["gastroscopy"]
257
239
  description: "Elective gastroscopy for patients with obstruction / dysphagia"
258
240
  expected_interventions:
259
241
  [
260
242
  "egd_stepwise_biopsy",
261
- "egd_lesion_biopsy",
262
- "egd_clip",
243
+ "endoscopy_biopsy_grasper_generic",
244
+ "endoscopy_hemoclip_generic",
263
245
  "egd_esophagus_injection_botox",
264
- "egd_stenosis_dilation",
265
- "egd_stenosis_bougie",
266
- "egd_stenosis_balloon",
267
- "egd_stenosis_stent",
268
- "egd_lesion_radiofrequency_ablation",
269
- "egd_lesion_cryotherapy",
270
- "egd_stenosis_laser",
246
+ "endoscopy_dilation_bougie",
247
+ "endoscopy_dilation_balloon",
248
+ "endoscopy_stent_generic",
249
+ "endoscopy_ablation_radiofrequency",
250
+ "endoscopy_ablation_cryotherapy",
251
+ "endoscopy_ablation_laser",
271
252
  ]
272
253
 
273
254
  # Endosonography
274
255
  - model: endoreg_db.examination_indication
275
256
  fields:
276
- name: "endosonography_upper_gi"
257
+ name: "endosonography_upper_gi_non_invasive"
277
258
  name_de: "Endosonographie oberer GI-Trakt"
278
259
  name_en: "Endosonography Upper GI Tract"
279
- examinations: ["endosonography_upper_gi"]
280
- description: "Endosonography of the upper GI tract without further specification"
260
+ description: "Endosonography of the upper GI tract without planned intervention"
281
261
  expected_interventions: []
282
262
 
283
263
  - model: endoreg_db.examination_indication
@@ -285,42 +265,24 @@
285
265
  name: "endosonography_upper_gi_invasive"
286
266
  name_de: "Endosonographie oberer GI-Trakt (invasiv)"
287
267
  name_en: "Endosonography Upper GI Tract (invasive)"
288
- examinations: ["endosonography_upper_gi"]
289
268
  description: "Invasive endosonography of the upper GI tract"
290
- expected_interventions:
291
- [
292
- "endosonography_upper_gi_solid_lesion_fna",
293
- "endosonography_upper_gi_cyst_fna",
294
- "endosonography_upper_gi_pseudocyst_fna",
295
- "endosonography_upper_gi_biliary_drainage",
296
- "endosonography_upper_gi_pancreatic_drainage",
297
- "endosonography_upper_gi_cyst_gastrostomy",
298
- "endosonography_upper_gi_pancreaticogastrostomy",
299
- "endosonography_upper_gi_cholangioduodenostomy",
300
- "endosonography_upper_gi_pancreaticoduodenostomy",
301
- ]
269
+ expected_interventions: [] #TODO
302
270
 
303
271
  - model: endoreg_db.examination_indication
304
272
  fields:
305
- name: "endosonography_lower_gi"
273
+ name: "endosonography_lower_gi_non_invasive"
306
274
  name_de: "Endosonographie unterer GI-Trakt"
307
275
  name_en: "Endosonography Lower GI Tract"
308
- examinations: ["endosonography_lower_gi"]
309
- description: "Endosonography of the lower GI tract without further specification"
310
- expected_interventions: []
276
+ description: "Endosonography of the lower GI tract without planned intervention"
277
+ expected_interventions: [] #TODO
311
278
 
312
279
  - model: endoreg_db.examination_indication
313
280
  fields:
314
281
  name: "endosonography_lower_gi_invasive"
315
282
  name_de: "Endosonographie unterer GI-Trakt (invasiv)"
316
283
  name_en: "Endosonography Lower GI Tract (invasive)"
317
- examinations: ["endosonography_lower_gi"]
318
284
  description: "Invasive endosonography of the lower GI tract"
319
- expected_interventions:
320
- [
321
- "endosonography_lower_gi_solid_lesion_fna",
322
- "endosonography_lower_gi_lymph_node_fna",
323
- ]
285
+ expected_interventions: [] #TODO
324
286
 
325
287
  # PTC(D)
326
288
  - model: endoreg_db.examination_indication
@@ -328,28 +290,16 @@
328
290
  name: "percutaneous_transhepatic_cholangiography"
329
291
  name_de: "Perkutane transhepatische Cholangiographie"
330
292
  name_en: "Percutaneous Transhepatic Cholangiography"
331
- examinations: ["percutaneous_transhepatic_cholangiography"]
332
293
  description: "Percutaneous transhepatic cholangiography without further specification"
333
- expected_interventions:
334
- [
335
- "percutaneous_transhepatic_cholangiography",
336
- "sonography_guided_liver_punction",
337
- "xray_guided_liver_punction",
338
- ]
294
+ expected_interventions: [] #TODO
339
295
 
340
296
  - model: endoreg_db.examination_indication
341
297
  fields:
342
298
  name: "percutaneous_transhepatic_biliary_drainage"
343
299
  name_de: "Perkutane transhepatische Gallengangdrainage"
344
300
  name_en: "Percutaneous Transhepatic Biliary Drainage"
345
- examinations: ["percutaneous_transhepatic_cholangiography"]
346
301
  description: "Percutaneous transhepatic biliary drainage without further specification"
347
- expected_interventions:
348
- [
349
- "percutaneous_transhepatic_cholangiography",
350
- "percutaneous_transhepatic_biliary_drainage",
351
- "biliary_stent",
352
- ]
302
+ expected_interventions: [] #TODO
353
303
 
354
304
  # ERCP
355
305
  - model: endoreg_db.examination_indication
@@ -357,68 +307,53 @@
357
307
  name: "erc"
358
308
  name_de: "Endoskopische retrograde Cholangiographie"
359
309
  name_en: "Endoscopic Retrograde Cholangiography"
360
- examinations: ["ercp"]
361
310
  description: "ERC without further specification"
362
- expected_interventions:
363
- [
364
- "ercp",
365
- "ercp_sphincterotomy",
366
- "ercp_stent",
367
- "ercp_extraction",
368
- "ercp_biopsy",
369
- ]
311
+ expected_interventions: [] #TODO
370
312
 
371
313
  - model: endoreg_db.examination_indication
372
314
  fields:
373
315
  name: "erc_no_est"
374
316
  name_de: "ERC (ohne EST)"
375
317
  name_en: "ERC (without EST)"
376
- examinations: ["ercp"]
377
318
  description: "ERC without endoscopic sphincterotomy"
378
- expected_interventions:
379
- ["erc", "ercp_stent", "ercp_extraction", "ercp_biopsy"]
319
+ expected_interventions: [] #TODO
380
320
 
381
321
  - model: endoreg_db.examination_indication
382
322
  fields:
383
- name: "ERCP"
323
+ name: "ercp"
384
324
  name_de: "Endoskopische retrograde Cholangiopankreatikographie"
385
325
  name_en: "Endoscopic Retrograde Cholangiopancreatography"
386
- examinations: ["ercp"]
387
326
  description: "ERCP without further specification"
388
- expected_interventions:
389
- [
390
- "erp",
391
- "erc",
392
- "ercp_sphincterotomy",
393
- "ercp_stent",
394
- "ercp_extraction",
395
- "ercp_biopsy",
396
- ]
327
+ expected_interventions: [] #TODO
397
328
 
398
329
  - model: endoreg_db.examination_indication
399
330
  fields:
400
331
  name: "ercp_no_est"
401
332
  name_de: "ERCP (ohne EST)"
402
333
  name_en: "ERCP (without EST)"
403
- examinations: ["ercp"]
404
334
  description: "ERCP without endoscopic sphincterotomy"
405
- expected_interventions:
406
- ["erc", "erp", "ercp_stent", "ercp_extraction", "ercp_biopsy"]
335
+ expected_interventions: [] #TODO
407
336
 
408
337
  - model: endoreg_db.examination_indication
409
338
  fields:
410
339
  name: "ercp_therapeutic_stenosis"
411
340
  name_de: "ERC(P) (Therapie, Stenose)"
412
341
  name_en: "ERC(P) (Therapeutic, Stenosis)"
413
- examinations: ["ercp"]
414
342
  description: "ERC(P) for therapeutic purposes in patients with stenosis"
415
- expected_interventions:
416
- [
417
- "erc",
418
- "erp",
419
- "ercp_sphincterotomy",
420
- "ercp_stent",
421
- "ercp_extraction",
422
- "ercp_biopsy",
423
- "ercp_radiofrequency_ablation",
424
- ]
343
+ expected_interventions: [] #TODO
344
+
345
+ - model: endoreg_db.examination_indication
346
+ fields:
347
+ name: "small_bowel_endoscopy_generic"
348
+ name_de: "Dünndarmendoskopie"
349
+ name_en: "Small Bowel Endoscopy"
350
+ description: "Small bowel endoscopy without further specification"
351
+ expected_interventions: [] #TODO
352
+
353
+ - model: endoreg_db.examination_indication
354
+ fields:
355
+ name: "capsule_endoscopy_generic"
356
+ name_de: "Kapselendoskopie"
357
+ name_en: "Capsule Endoscopy"
358
+ description: "Capsule endoscopy without further specification"
359
+ expected_interventions: [] #TODO
@@ -4,15 +4,6 @@
4
4
  name_de: Koloskopie (unspezifisch)
5
5
  name_en: Colonoscopy (unspecific)
6
6
  description: Colonoscopy without further specification
7
- examinations: ["colonoscopy"]
8
- indications:
9
- [
10
- "colonoscopy",
11
- "colonoscopy_screening",
12
- "colonoscopy_lesion_removal_small",
13
- "colonoscopy_lesion_removal_large",
14
- "colonoscopy_diagnostic_acute_symptomatic",
15
- ]
16
7
 
17
8
  - model: endoreg_db.examination_indication_classification
18
9
  fields:
@@ -20,8 +11,6 @@
20
11
  name_de: Koloskopie (akut)
21
12
  name_en: Colonoscopy (acute)
22
13
  description: Colonoscopy for acute indications
23
- examinations: ["colonoscopy"]
24
- indications: ["colonoscopy_diagnostic_acute_symptomatic"]
25
14
 
26
15
  - model: endoreg_db.examination_indication_classification
27
16
  fields:
@@ -29,13 +18,6 @@
29
18
  name_de: Koloskopie (elektiv)
30
19
  name_en: Colonoscopy (elective)
31
20
  description: Colonoscopy for elective indications
32
- examinations: ["colonoscopy"]
33
- indications:
34
- [
35
- "colonoscopy_screening",
36
- "colonoscopy_lesion_removal_small",
37
- "colonoscopy_lesion_removal_large",
38
- ]
39
21
 
40
22
  - model: endoreg_db.examination_indication_classification
41
23
  fields:
@@ -43,22 +25,6 @@
43
25
  name_de: Gastroskopie
44
26
  name_en: Gastroscopy
45
27
  description: Gastroscopy without further specification
46
- examinations: ["gastroscopy"]
47
- indications:
48
- [
49
- "gastroscopy",
50
- "gastroscopy_baseline",
51
- "gastroscopy_diagnostic_acute_symptomatic",
52
- "gastroscopy_acute_bleeding",
53
- "gastroscopy_diagnostic_elective",
54
- "gastroscopy_percutane_enterostomy",
55
- "gastroscopy_therapeutic_varicosis_esophagus",
56
- "gastroscopy_therapeutic_varicosis_stomach",
57
- "gastroscopy_therapeutic_varicosis_intestine",
58
- "gastroscopy_lesion_removal_small",
59
- "gastroscopy_lesion_removal_large",
60
- "gastroscopy_obstruction_generic",
61
- ]
62
28
 
63
29
  - model: endoreg_db.examination_indication_classification
64
30
  fields:
@@ -66,9 +32,6 @@
66
32
  name_de: Gastroskopie (akut)
67
33
  name_en: Gastroscopy (acute)
68
34
  description: Gastroscopy for acute indications
69
- examinations: ["gastroscopy"]
70
- indications:
71
- ["gastroscopy_diagnostic_acute_symptomatic", "gastroscopy_acute_bleeding"]
72
35
 
73
36
  - model: endoreg_db.examination_indication_classification
74
37
  fields:
@@ -76,18 +39,6 @@
76
39
  name_de: Gastroskopie (elektiv)
77
40
  name_en: Gastroscopy (elective)
78
41
  description: Gastroscopy for elective indications
79
- examinations: ["gastroscopy"]
80
- indications:
81
- [
82
- "gastroscopy_diagnostic_elective",
83
- "gastroscopy_percutane_enterostomy",
84
- "gastroscopy_therapeutic_varicosis_esophagus",
85
- "gastroscopy_therapeutic_varicosis_stomach",
86
- "gastroscopy_therapeutic_varicosis_intestine",
87
- "gastroscopy_lesion_removal_small",
88
- "gastroscopy_lesion_removal_large",
89
- "gastroscopy_obstruction_generic",
90
- ]
91
42
 
92
43
  - model: endoreg_db.examination_indication_classification
93
44
  fields:
@@ -95,8 +46,6 @@
95
46
  name_de: "Dünndarmendoskopie"
96
47
  name_en: Small Bowel Endoscopy
97
48
  description: Small Bowel Endoscopy without further specification
98
- examinations: ["small_bowel_endoscopy"]
99
- indications: []
100
49
 
101
50
  - model: endoreg_db.examination_indication_classification
102
51
  fields:
@@ -104,8 +53,6 @@
104
53
  name_de: Kapselendoskopie
105
54
  name_en: Capsule Endoscopy
106
55
  description: Capsule Endoscopy without further specification
107
- examinations: ["capsule_endoscopy"]
108
- indications: []
109
56
 
110
57
  - model: endoreg_db.examination_indication_classification
111
58
  fields:
@@ -113,8 +60,6 @@
113
60
  name_de: Endosonographie unterer GI-Trakt
114
61
  name_en: Endosonography Lower GI Tract
115
62
  description: Endosonography Lower GI Tract without further specification
116
- examinations: ["endosonography_lower_gi"]
117
- indications: ["endosonography_lower_gi"]
118
63
 
119
64
  - model: endoreg_db.examination_indication_classification
120
65
  fields:
@@ -122,8 +67,6 @@
122
67
  name_de: Endosonographie oberer GI-Trakt
123
68
  name_en: Endosonography Upper GI Tract
124
69
  description: Endosonography Upper GI Tract without further specification
125
- examinations: ["endosonography_upper_gi"]
126
- indications: ["endosonography_upper_gi", "endosonography_upper_gi_invasive"]
127
70
 
128
71
  - model: endoreg_db.examination_indication_classification
129
72
  fields:
@@ -131,9 +74,6 @@
131
74
  name_de: Endoskopische retrograde Cholangiopankreatikographie
132
75
  name_en: Endoscopic Retrograde Cholangiopancreatography
133
76
  description: Endoscopic Retrograde Cholangiopancreatography without further specification
134
- examinations: ["ercp"]
135
- indications:
136
- ["erc", "erc_no_est", "ERCP", "ercp_no_est", "ercp_therapeutic_stenosis"]
137
77
 
138
78
  - model: endoreg_db.examination_indication_classification
139
79
  fields:
@@ -141,11 +81,6 @@
141
81
  name_de: Sonographisch gesteuert
142
82
  name_en: Sonography guided
143
83
  description: Sonography guided procedures
144
- indications:
145
- [
146
- "percutaneous_transhepatic_cholangiography",
147
- "percutaneous_transhepatic_biliary_drainage",
148
- ]
149
84
 
150
85
  - model: endoreg_db.examination_indication_classification
151
86
  fields:
@@ -153,8 +88,3 @@
153
88
  name_de: Röntgen gesteuert
154
89
  name_en: X-ray guided
155
90
  description: X-ray guided procedures
156
- indications:
157
- [
158
- "percutaneous_transhepatic_cholangiography",
159
- "percutaneous_transhepatic_biliary_drainage",
160
- ]