endoreg-db 0.8.8.0__py3-none-any.whl → 0.8.8.9__py3-none-any.whl

endoreg_db/data/finding_intervention/endoscopy_egd.yaml

@@ -1,128 +0,0 @@
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_biopsy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_hp_biopsy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_injection_vasoactive
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_clip
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_over_the_scope_clip
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_varice_band_ligation
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_varice_sclerotherapy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_argon_plasma_coagulation
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_percutaneous_gastroenterostomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_percutaneous_jejunostomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_clip
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_varicosis_band_ligation
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_varicosis_sclerotherapy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_injection_vasoactive
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_injection_varicosis
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_polypectomy_cold_snare
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_polypectomy_hot_snare
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_polypectomy_forceps
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_injection_liftup
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_emr
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_esd
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_eftr
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_poem
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stepwise_biopsy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_esophagus_injection_botox
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stenosis_dilation
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stenosis_bougie
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stenosis_balloon
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stenosis_stent
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_radiofrequency_ablation
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_cryotherapy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stenosis_laser
-    # ...existing code...

endoreg_db/data/finding_intervention/endoscopy_ercp.yaml

@@ -1,32 +0,0 @@
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp_sphincterotomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp_stent
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp_extraction
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp_biopsy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: erc
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: erp
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp_radiofrequency_ablation
-    # ...existing code...

endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml

@@ -1,9 +0,0 @@
-# (currently no interventions)
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_lower_gi_solid_lesion_fna
-
-# endosonography_lower_gi_lymph_node_fna
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_lower_gi_lymph_node_fna

endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml

@@ -1,36 +0,0 @@
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_solid_lesion_fna
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_cyst_fna
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_pseudocyst_fna
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_biliary_drainage
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_pancreatic_drainage
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_cyst_gastrostomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_pancreaticogastrostomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_cholangioduodenostomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_pancreaticoduodenostomy
-    # ...existing code...

endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml

@@ -1,79 +0,0 @@
-- model: endoreg_db.finding_classification_type
-  fields:
-    name: "colon_lesion_size"
-    name_de: "Größenklassifikation Kolonläsion"
-    name_en: "Colon Lesion Size Classification"
-
-    required_by_findings: [
-      "colon_polyp"
-    ]
-    optional_for_findings: [
-      "tumor"
-    ]
-
-- model: endoreg_db.finding_classification_type
-  fields:
-    name: "colon_lesion_shape"
-    name_de: "Formklassifikation Kolonläsion"
-    name_en: "Colon Lesion Shape Classification"
-
-    required_by_findings: [
-      "colon_polyp"
-    ]
-    optional_for_findings: [
-      "tumor"
-    ]
-
-- model: endoreg_db.finding_classification_type
-  fields:
-    name: "colon_lesion_surface_intact"
-    name_de: "Oberflächenklassifikation Kolonläsion"
-    name_en: "Colon Lesion Surface Classification"
-
-    required_by_findings: [
-      "colon_polyp"
-    ]
-    optional_for_findings: [
-      "tumor"
-    ]
-
-- model: endoreg_db.finding_classification_type
-  fields:
-    name: "colon_lesion_planarity"
-    name_de: "Planaritätsklassifikation Kolonläsion"
-    name_en: "Colon Lesion Planarity Classification"
-
-    required_by_findings: [
-      "colon_polyp"
-    ]
-    optional_for_findings: [
-
-    ]
-
-# Circularity
-- model: endoreg_db.finding_classification_type
-  fields:
-    name: "colon_lesion_circularity"
-    name_de: "Kolonläsion - Zirkularität"
-    name_en: "Colon lesion - circularity"
-
-    required_by_findings: [
-      "colon_polyp"
-    ]
-    optional_for_findings: [
-      "tumor"
-    ]
-
-# colon_lesion_advanced_imaging
-- model: endoreg_db.finding_classification_type
-  fields:
-    name: "colon_lesion_advanced_imaging"
-    name_de: "Kolonläsion - Advanced Imaging"
-    name_en: "Colon lesion - Advanced Imaging"
-
-    required_by_findings: [
-      "colon_polyp"
-    ]
-    optional_for_findings: [
-      "tumor"
-    ]

endoreg_db/data/requirement/age.yaml

@@ -1,26 +0,0 @@
-# patient_age_gte_18
-- model: endoreg_db.requirement
-  fields:
-    name: "patient_age_gte_18"
-    name_de: "Patientenalter >= 18 Jahre"
-    name_en: "Patient age >= 18 years"
-    description: "This requirement is used to indicate that the patient must be at least 18 years old."
-    requirement_types:
-      - "patient"
-    operators:
-      - age_gte
-    numeric_value: 18
-
-
-- model: endoreg_db.requirement
-  fields:
-    name: "patient_age_lte_100"
-    name_de: "Patientenalter <= 100 Jahre"
-    name_en: "Patient age <= 100 years"
-    description: "This requirement is used to indicate that the patient must be at most 100 years old."
-    requirement_types:
-      - "patient"
-    operators:
-      - age_lte
-    numeric_value: 100
-    

endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml

@@ -1,45 +0,0 @@
-- model: endoreg_db.requirement
-  fields:
-    name: "colonoscopy_austria_screening_bowel_prep"
-    requirement_types:
-      - "patient_examination"
-    operators:
-      - "models_match_any"
-    finding_classifications:
-      - "bowel_prep_screening_austria"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "colonoscopy_austria_screening_sedation"
-    requirement_types:
-      - "patient_examination"
-    operators:
-      - "models_match_any"
-    finding_classifications:
-      - "sedation_performed"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "colonoscopy_austria_screening_examination_cecum_visualized"
-    requirement_types:
-      - "patient_finding"
-    operators:
-      - "models_match_all"
-    findings:
-      - "cecum"
-    finding_classifications: [
-      "visualized"
-    ]
-    finding_classification_choices: [
-      "yes"
-    ]
-
-- model: endoreg_db.requirement
-  fields:
-    name: "colonoscopy_austria_screening_examination_reason_incomplete"
-    requirement_types:
-      - "patient_examination"
-    operators:
-      - "models_match_all"
-    finding_classifications:
-      - "colonoscopy_not_complete_reason"

endoreg_db/data/requirement/disease_cardiovascular.yaml

@@ -1,79 +0,0 @@
-# KHK
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_is_coronary_artery_disease"
-    name_de: "Koronare Gefäßerkrankung"
-    name_en: "Coronary artery disease"
-    description: "Coronary artery disease"
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    diseases:
-      - "coronary_artery_disease"
-
-# Hypertension
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_is_hypertension"
-    name_de: "Arterielle Hypertonie"
-    name_en: "Hypertension"
-    description: "Hypertension"
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    diseases:
-      - "hypertension"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_is_congestive_heart_failure"
-    name_de: "Chron. Herzinsuffizienz"
-    name_en: "Congestive heart failure"
-    description: "Congestive heart failure"
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    diseases:
-      - "congestive_heart_failure"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_is_diabetes_mellitus_I"
-    name_de: "Diabetes mellitus Typ I"
-    name_en: "Diabetes mellitus type I"
-    description: "Diabetes mellitus type I"
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    diseases:
-      - "diabetes_mellitus_I"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_is_diabetes_mellitus_II"
-    name_de: "Diabetes mellitus Typ II"
-    name_en: "Diabetes mellitus type II"
-    description: "Diabetes mellitus type II"
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    diseases:
-      - "diabetes_mellitus_II"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_is_non_valvular_atrial_fibrillation"
-    name_de: "Nicht valvuläres Vorhofflimmern"
-    name_en: "Non valvular atrial fibrillation"
-    description: "Non valvular atrial fibrillation"
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    diseases:
-      - "non_valvular_atrial_fibrillation"

endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml

@@ -1,41 +0,0 @@
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_classification_choice_is_coronary_artery_disease_1_vessel"
-    name_de: "Koronare Gefäßerkrankung (1-Gefäß-Erkrankung)"
-    name_en: "Coronary artery disease (1-vessel disease)"
-    description: "Coronary artery disease (1-vessel disease)"
-    requirement_types:
-      - "patient"
-      - "patient_disease"
-    operators:
-      - models_match_all
-    disease_classification_choices:
-      - "khk_1_ge"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_classification_choice_is_coronary_artery_disease_2_vessel"
-    name_de: "Koronare Gefäßerkrankung (2-Gefäß-Erkrankung)"
-    name_en: "Coronary artery disease (2-vessel disease)"
-    description: "Coronary artery disease (2-vessel disease)"
-    requirement_types:
-      - "patient"
-      - "patient_disease"
-    operators:
-      - models_match_all
-    disease_classification_choices:
-      - "khk_2_ge"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_classification_choice_is_coronary_artery_disease_3_vessel"
-    name_de: "Koronare Gefäßerkrankung (3-Gefäß-Erkrankung)"
-    name_en: "Coronary artery disease (3-vessel disease)"
-    description: "Coronary artery disease (3-vessel disease)"
-    requirement_types:
-      - "patient"
-      - "patient_disease"
-    operators:
-      - models_match_all
-    disease_classification_choices:
-      - "khk_3_ge"

endoreg_db/data/requirement/disease_hepatology.yaml

@@ -1,12 +0,0 @@
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_is_liver_cirrhosis"
-    name_de: "Erkrankung Leberzirrhose"
-    name_en: "Disease Liver Cirrhosis"
-    description: "Disease Liver Cirrhosis"
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    diseases:
-      - "liver_cirrhosis"

endoreg_db/data/requirement/disease_misc.yaml

@@ -1,12 +0,0 @@
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_is_malignoma_unspecified"
-    name_de: "Malignom, nicht näher bezeichnet"
-    name_en: "Malignoma, unspecified"
-    description: "Malignoma, unspecified"
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    diseases:
-      - "disease_is_malignoma_unspecified"

endoreg_db/data/requirement/disease_renal.yaml

@@ -1,96 +0,0 @@
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_is_chronic_kidney_disease"
-    name_de: "Erkrankung chronische Nierenerkrankung"
-    name_en: "Disease Chronic Kidney Disease"
-    description: "Disease Chronic Kidney Disease"
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    diseases:
-      - "chronic_kidney_disease"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_classification_choice_is_ckd_kdigo_1"
-    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 1)"
-    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 1)"
-    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 1)"
-    requirement_types:
-      - "patient_disease"
-      - "patient"
-    operators:
-      - models_match_all
-    disease_classification_choices:
-      - "ckd_kdigo_1"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_classification_choice_is_ckd_kdigo_2"
-    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 2)"
-    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 2)"
-    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 2)"
-    requirement_types:
-      - "patient_disease"
-      - "patient"
-    operators:
-      - models_match_all
-    disease_classification_choices:
-      - "ckd_kdigo_2"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_classification_choice_is_ckd_kdigo_3a"
-    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 3a)"
-    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 3a)"
-    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 3a)"
-    requirement_types:
-      - "patient_disease"
-      - "patient"
-    operators:
-      - models_match_all
-    disease_classification_choices:
-      - "ckd_kdigo_3a"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_classification_choice_is_ckd_kdigo_3b"
-    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 3b)"
-    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 3b)"
-    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 3b)"
-    requirement_types:
-      - "patient_disease"
-      - "patient"
-    operators:
-      - models_match_all
-    disease_classification_choices:
-      - "ckd_kdigo_3b"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_classification_choice_is_ckd_kdigo_4"
-    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 4)"
-    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 4)"
-    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 4)"
-    requirement_types:
-      - "patient_disease"
-      - "patient"
-    operators:
-      - models_match_all
-    disease_classification_choices:
-      - "ckd_kdigo_4"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "disease_classification_choice_is_ckd_kdigo_5"
-    name_de: "Erkrankung Klassifikation chronische Nierenerkrankung (KDIGO) (Stadium 5)"
-    name_en: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 5)"
-    description: "Disease Classification Chronic Kidney Disease (KDIGO) (Stage 5)"
-    requirement_types:
-      - "patient_disease"
-      - "patient"
-    operators:
-      - models_match_all
-    disease_classification_choices:
-      - "ckd_kdigo_5"

endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml

@@ -1,59 +0,0 @@
-- model: endoreg_db.requirement
-  fields:
-    name: "endoscopy_intervention_bleeding_risk_high"
-    name_de: "Endoskopische Intervention - Blutungsrisiko: hoch"
-    name_en: "Endoscopy Intervention - Bleeding Risk: High"
-    description: "Endoskopische Intervention - Blutungsrisiko: hoch"
-    requirement_types:
-      - "examination_indication"
-    operators:
-      - "models_match_any"
-    finding_interventions:
-      - "egd_lesion_polypectomy_cold_snare"
-      - "egd_lesion_polypectomy_hot_snare"
-      - "colon_lesion_polypectomy_cold_snare"
-      - "colon_lesion_polypectomy_hot_snare"
-      - "colon_lesion_emr"
-      - "colon_lesion_esd"
-      - "colon_lesion_eftr"
-      - "egd_lesion_emr"
-      - "egd_lesion_esd"
-      - "egd_poem"
-      - "ercp_sphincterotomy"
-      - "egd_varice_band_ligation"
-      - "egd_varice_sclerotherapy"
-      - "egd_percutaneous_gastroenterostomy"
-      - "percutaneous_transhepatic_cholangiography"
-      - "percutaneous_transhepatic_biliary_drainage"
-      - "ercp_radiofrequency_ablation"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "endoscopy_intervention_bleeding_risk_low"
-    name_de: "Endoskopische Intervention - Blutungsrisiko: niedrig"
-    name_en: "Endoscopy Intervention - Bleeding Risk: Low"
-    description: "Endoskopische Intervention - Blutungsrisiko: niedrig"
-    requirement_types:
-      - "examination_indication"
-    operators:
-      - "models_match_any"
-    finding_interventions:
-      - "egd_lesion_biopsy"
-      - "colon_lesion_biopsy"
-      - "ercp"
-      - "egd_argon_plasma_coagulation"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "indication_is_colon_emr"
-    name_de: "Indikation Kolon EMR"
-    name_en: "Indication colon EMR"
-    description: "This functions evaluates whether the input ()"
-    requirement_types:
-      - "examination_indication"
-    operators:
-      - "models_match_any"
-    # when creating a requirement involving other models,
-    # we need to create the relationship here:
-    examination_indications:
-      - "colonoscopy_lesion_removal_emr"