endoreg-db 0.8.8.0__py3-none-any.whl → 0.8.8.9__py3-none-any.whl

endoreg_db/data/_examples/finding_intervention/endoscopy_colonoscopy.yaml

@@ -1,168 +0,0 @@
-- model: endoreg_db.finding_intervention
-  fields:
-    name: colon_lesion_polypectomy_cold_snare
-    description:
-      Cold snare polypectomy is a technique used to remove small polyps
-      from the colon. It is performed using a snare wire loop that is passed through
-      the colonoscope and used to remove the polyp by cutting it off at the base.
-      The procedure is usually done without the need for sedation and is considered
-      to be a safe and effective way to remove small polyps from the colon.
-    intervention_types:
-      - therapeutic
-      - invasive
-    required_lab_values:
-      - hemoglobin
-      - platelets
-      - international_normalized_ratio
-    contraindications:
-      - anticoagulation-therapeutic
-      - thrombocytopenia-severe
-- model: endoreg_db.finding_intervention
-  fields:
-    name: colon_lesion_polypectomy_hot_snare
-    description:
-      Hot snare polypectomy is a technique used to remove small polyps
-      from the colon. It is performed using a snare wire loop that is passed through
-      the colonoscope and used to remove the polyp by cutting it off at the base.
-      The procedure is usually done without the need for sedation and is considered
-      to be a safe and effective way to remove small polyps from the colon.
-    intervention_types:
-      - therapeutic
-      - invasive
-    required_lab_values:
-      - hemoglobin
-      - platelets
-      - international_normalized_ratio
-    contraindications:
-      - anticoagulation-therapeutic
-      - thrombocytopenia-severe
-- model: endoreg_db.finding_intervention
-  fields:
-    name: colon_lesion_injection_liftup
-    description:
-      Lift-up injection is a technique used to lift up a lesion in the
-      colon. It is performed by injecting a solution under the lesion to create a
-      cushion of fluid that lifts the lesion away from the colon wall. This allows
-      the lesion to be removed more easily and reduces the risk of complications during
-      the procedure.
-    intervention_types:
-      - diagnostic
-      - invasive
-    required_lab_values:
-      - hemoglobin
-      - platelets
-      - international_normalized_ratio
-    contraindications: []
-- model: endoreg_db.finding_intervention
-  fields:
-    name: colon_lesion_injection_vasoactive
-    description:
-      Vasoactive injection is a technique used to reduce bleeding from
-      a lesion in the colon. It is performed by injecting a solution into the lesion
-      that causes the blood vessels to constrict, reducing the flow of blood to the
-      area. This can help to stop bleeding and make it easier to remove the lesion
-      during the procedure.
-    intervention_types:
-      - therapeutic
-      - invasive
-    required_lab_values: []
-    contraindications: []
-- model: endoreg_db.finding_intervention
-  fields:
-    name: colon_lesion_biopsy
-    description:
-      Biopsy is a technique used to take a small sample of tissue from
-      a lesion in the colon. It is performed by inserting a small instrument through
-      the colonoscope and removing a small piece of tissue from the lesion. The tissue
-      sample is then sent to a laboratory for analysis to determine if the lesion
-      is cancerous or benign.
-    intervention_types:
-      - diagnostic
-      - invasive
-    required_lab_values: []
-    contraindications:
-      - anticoagulation-therapeutic
-      - thrombocytopenia-severe
-- model: endoreg_db.finding_intervention
-  fields:
-    name: colon_lesion_emr
-    description:
-      Endoscopic mucosal resection (EMR) is a technique used to remove
-      large polyps or early-stage cancers from the colon. It is performed by injecting
-      a solution under the lesion to create a cushion of fluid that lifts the lesion
-      away from the colon wall. A snare wire loop is then used to remove the lesion
-      by cutting it off at the base. The procedure is usually done under sedation
-      and is considered to be a safe and effective way to remove large polyps or early-stage
-      cancers from the colon.
-    intervention_types:
-      - therapeutic
-      - invasive
-    required_lab_values:
-      - hemoglobin
-      - platelets
-      - international_normalized_ratio
-    contraindications:
-      - anticoagulation-therapeutic
-      - thrombocytopenia-severe
-- model: endoreg_db.finding_intervention
-  fields:
-    name: colon_lesion_esd
-    description:
-      Endoscopic submucosal dissection (ESD) is a technique used to remove
-      large polyps or early-stage cancers from the colon. It is performed by injecting
-      a solution under the lesion to create a cushion of fluid that lifts the lesion
-      away from the colon wall. A snare wire loop is then used to remove the lesion
-      by cutting it off at the base. The procedure is usually done under sedation
-      and is considered to be a safe and effective way to remove large polyps or early-stage
-      cancers from the colon.
-    intervention_types:
-      - therapeutic
-      - invasive
-    required_lab_values:
-      - hemoglobin
-      - platelets
-      - international_normalized_ratio
-    contraindications:
-      - anticoagulation-therapeutic
-      - thrombocytopenia-severe
-- model: endoreg_db.finding_intervention
-  fields:
-    name: colon_lesion_clip
-    description:
-      Clip closure is a technique used to close a defect in the colon wall
-      after a polyp has been removed. It is performed by placing a small metal clip
-      over the defect to seal it and prevent bleeding or perforation. The clip is
-      left in place until the defect has healed, usually within a few days.
-    intervention_types:
-      - therapeutic
-      - invasive
-      - foreign_body
-    required_lab_values: []
-    contraindications: []
-- model: endoreg_db.finding_intervention
-  fields:
-    name: colon_lesion_over_the_scope_clip
-    description:
-      Over-the-scope clip (OTSC) is a clipping system used to close defects
-      in the GI tract.
-    intervention_types:
-      - therapeutic
-      - invasive
-    required_lab_values: []
-    contraindications: []
-- model: endoreg_db.finding_intervention
-  fields:
-    name: colon_lesion_eftr
-    description:
-      Endoscopic full-thickness resection (EFTR) is a technique used to
-      remove lesions in the colon.
-    intervention_types:
-      - therapeutic
-      - invasive
-    required_lab_values:
-      - hemoglobin
-      - platelets
-      - international_normalized_ratio
-    contraindications:
-      - anticoagulation-therapeutic
-      - thrombocytopenia-severe

endoreg_db/data/_examples/finding_intervention/endoscopy_egd.yaml

@@ -1,128 +0,0 @@
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_biopsy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_hp_biopsy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_injection_vasoactive
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_clip
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_over_the_scope_clip
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_varice_band_ligation
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_varice_sclerotherapy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_argon_plasma_coagulation
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_percutaneous_gastroenterostomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_percutaneous_jejunostomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_clip
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_varicosis_band_ligation
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_varicosis_sclerotherapy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_injection_vasoactive
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_injection_varicosis
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_polypectomy_cold_snare
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_polypectomy_hot_snare
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_polypectomy_forceps
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_injection_liftup
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_emr
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_esd
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_eftr
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_poem
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stepwise_biopsy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_esophagus_injection_botox
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stenosis_dilation
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stenosis_bougie
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stenosis_balloon
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stenosis_stent
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_radiofrequency_ablation
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_lesion_cryotherapy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: egd_stenosis_laser
-    # ...existing code...

endoreg_db/data/_examples/finding_intervention/endoscopy_ercp.yaml

@@ -1,32 +0,0 @@
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp_sphincterotomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp_stent
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp_extraction
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp_biopsy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: erc
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: erp
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: ercp_radiofrequency_ablation
-    # ...existing code...

endoreg_db/data/_examples/finding_intervention/endoscopy_eus_lower.yaml

@@ -1,9 +0,0 @@
-# (currently no interventions)
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_lower_gi_solid_lesion_fna
-
-# endosonography_lower_gi_lymph_node_fna
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_lower_gi_lymph_node_fna

endoreg_db/data/_examples/finding_intervention/endoscopy_eus_upper.yaml

@@ -1,36 +0,0 @@
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_solid_lesion_fna
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_cyst_fna
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_pseudocyst_fna
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_biliary_drainage
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_pancreatic_drainage
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_cyst_gastrostomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_pancreaticogastrostomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_cholangioduodenostomy
-    # ...existing code...
-- model: endoreg_db.finding_intervention
-  fields:
-    name: endosonography_upper_gi_pancreaticoduodenostomy
-    # ...existing code...

endoreg_db/data/_examples/finding_intervention_type/endoscopy.yaml

@@ -1,15 +0,0 @@
-- model: endoreg_db.finding_intervention_type
-  fields:
-    name: "therapeutic"
-
-- model: endoreg_db.finding_intervention_type
-  fields:
-    name: "invasive"
-
-- model: endoreg_db.finding_intervention_type
-  fields:
-    name: "diagnostic"
-
-- model: endoreg_db.finding_intervention_type
-  fields:
-    name: "foreign_body"

endoreg_db/data/_examples/finding_type/data.yaml

@@ -1,43 +0,0 @@
-- model: endoreg_db.finding_type
-  fields:
-    name: "macroscopic"
-
-- model: endoreg_db.finding_type
-  fields:
-    name: "iatrogenic"
-
-- model: endoreg_db.finding_type
-  fields:
-    name: "postinterventional_immediate"
-
-- model: endoreg_db.finding_type
-  fields:
-    name: "postinterventional_delayed"
-
-- model: endoreg_db.finding_type
-  fields:
-    name: "bleeding"
-
-- model: endoreg_db.finding_type
-  fields:
-    name: "endoscopy_baseline"
-
-- model: endoreg_db.finding_type
-  fields:
-    name: "medication_related"
-    
-- model: endoreg_db.finding_type
-  fields:
-    name: "anatomy"
-
-- model: endoreg_db.finding_type
-  fields:
-    name: "anatomy_colon"
-
-- model: endoreg_db.finding_type
-  fields:
-    name: "summary"
-
-- model: endoreg_db.finding_type
-  fields:
-    name: "complication"

endoreg_db/data/_examples/requirement/age.yaml

@@ -1,26 +0,0 @@
-# patient_age_gte_18
-- model: endoreg_db.requirement
-  fields:
-    name: "patient_age_gte_18"
-    name_de: "Patientenalter >= 18 Jahre"
-    name_en: "Patient age >= 18 years"
-    description: "This requirement is used to indicate that the patient must be at least 18 years old."
-    requirement_types:
-      - "patient"
-    operators:
-      - age_gte
-    numeric_value: 18
-
-
-- model: endoreg_db.requirement
-  fields:
-    name: "patient_age_lte_100"
-    name_de: "Patientenalter <= 100 Jahre"
-    name_en: "Patient age <= 100 years"
-    description: "This requirement is used to indicate that the patient must be at most 100 years old."
-    requirement_types:
-      - "patient"
-    operators:
-      - age_lte
-    numeric_value: 100
-    

endoreg_db/data/_examples/requirement/gender.yaml

@@ -1,25 +0,0 @@
-- model: endoreg_db.requirement
-  fields:
-    name: "patient_gender_is_male"
-    name_de: "Patient ist männlich"
-    name_en: "Patient is male"
-    description: "Checks if the patient is male."
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    genders:
-      - "male"
-
-- model: endoreg_db.requirement
-  fields:
-    name: "patient_gender_is_female"
-    name_de: "Patient ist weiblich"
-    name_en: "Patient is female"
-    description: "Checks if the patient is female."
-    requirement_types:
-      - "patient"
-    operators:
-      - models_match_all
-    genders:
-      - "female"

endoreg_db/data/_examples/requirement_set/01_endoscopy_generic.yaml

@@ -1,48 +0,0 @@
-- models: endoreg_db.requirement_set
-  fields:
-    name: "patient_gender_generic"
-    name_de: "Patientengeschlecht (männlich/weiblich)"
-    name_en: "Patient gender generic" 
-    description: "Patient gender (generic)"
-    requirement_set_type: "any"
-    requirements:
-      - patient_gender_is_male
-      - patient_gender_is_female
-
-- models: endoreg_db.requirement_set
-  fields:
-    name: "basic_lab_values_normal"
-    name_de: "Basis-Labortests (Unauffällig)"
-    name_en: "Basic Lab Tests (Normal)"
-    description: "Basic lab tests (normal)"
-    requirement_set_type: "all"
-    requirements:
-      - "lab_value_hb_normal"
-      - "lab_value_leukocytes_normal"
-      - "lab_value_platelets_normal"
-      - "lab_value_creatinine_normal"
-      - "lab_value_inr_normal"
-
-- models: endoreg_db.requirement_set
-  fields:
-    name: "patient_age_generic"
-    name_de: "Patientenalter (18-100 Jahre)"
-    name_en: "Patient Age (18-100 years)"
-    description: "Patient age between 18 and 100 years"
-    requirement_set_type: "all"
-    requirements:
-      - "patient_age_gte_18"
-      - "patient_age_lte_100"
-
-# - models: endoreg_db.requirement_set
-- models: endoreg_db.requirement_set
-  fields:
-    name: "generic_patient"
-    requirement_set_type: "all"
-    description: "Generic patient requirement set"
-    name_de: "Generische Patientenanforderung"
-    name_en: "Generic Patient Requirement"
-    links_to_sets:
-      - "patient_age_generic"
-      - "patient_gender_generic"
-      - "basic_lab_values_normal"

endoreg_db/data/_examples/requirement_set/colonoscopy_austria_screening.yaml

@@ -1,57 +0,0 @@
-
-
-- models: endoreg_db.requirement_set
-  fields:
-    name: "colonoscopy_austria_screening_finding_polyp_required_classifications"
-    name_de: "Vorsorge Koloskopie Österreich: Polyp"
-    requirement_set_type: "all"
-    links_to_sets: []
-    requirements:
-      - "colon_austria_screening_polyp_size"
-      - "colonoscopy_austria_screening_polyp_location"
-      - "colonoscopy_austria_screening_polyp_histology"
-
-- models: endoreg_db.requirement_set
-  fields:
-    name: "colonoscopy_austria_screening_examination_complete"
-    requirement_set_type: "any"
-    requirements:
-      - "colonoscopy_austria_screening_examination_cecum_visualized"
-      - "colonoscopy_austria_screening_examination_reason_incomplete"
-
-- models: endoreg_db.requirement_set
-  fields:
-    name: "colonoscopy_austria_screening_examination_required_findings"
-    links_to_sets:
-      - "colonoscopy_austria_screening_examination_complete"
-    requirement_set_type: "all"
-    requirements:
-      - "colonoscopy_austria_screening_bowel_prep"
-      - "colonoscopy_austria_screening_sedation"
-
-- models: endoreg_db.requirement_set
-  fields:
-    name: "colonoscopy_austria_screening_required_patient_information"
-    name_de: "Vorsorge Koloskopie Österreich: Patienteninformation"
-    requirement_set_type: "all"
-    links_to_sets:
-      - "patient_gender_generic"
-      - "patient_age_generic"
-
-- models: endoreg_db.requirement_set
-  fields:
-    name: "colonoscopy_austria_screening_qa"
-    name_de: "Vorsorge Koloskopie Österreich QA"
-    name_en: "Colonoscopy Austria Screening QA"
-    description: "Colonoscopy Austria Screening QA"
-    requirement_set_type: "all"
-    links_to_sets:
-      - "colonoscopy_austria_screening_finding_polyp_required_classifications"
-      - "colonoscopy_austria_screening_required_patient_information"
-      - "colonoscopy_austria_screening_examination_required_findings"
-    tags:
-      - "report_mask_requirement_set"
-      - "colonoscopy_austria_screening"
-    reqset_exam_links:
-      - "colonoscopy_austria_req_sets"
-      - "colonoscopy_req_sets"

endoreg_db/data/_examples/requirement_set/endoscopy_bleeding_risk.yaml

@@ -1,52 +0,0 @@
-- models: endoreg_db.requirement_set
-  fields:
-    name: "endoscopy_bleeding_risk_high"
-    name_de: "Endoskopie - Blutungsrisiko: hoch"
-    name_en: "Endoscopy - Bleeding Risk: High"
-    description: "Endoskopie - Blutungsrisiko: hoch"
-    # linked_sets: [] # if this rule depends on others
-    requirement_set_type: "any"
-    requirements:
-      - "endoscopy_intervention_bleeding_risk_high"
-
-
-
-- models: endoreg_db.requirement_set
-  fields:
-    name: "endoscopy_bleeding_risk_low"
-    name_de: "Endoskopie - Blutungsrisiko: niedrig"
-    name_en: "Endoscopy - Bleeding Risk: Low"
-    description: "Endoskopie - Blutungsrisiko: niedrig"
-    # linked_sets: [] # if this rule depends on others
-    requirement_set_type: "any"
-    requirements:
-      - "endoscopy_intervention_bleeding_risk_low"
-    links_to_sets: []
-
-
-
-    
-- models: endoreg_db.requirement_set
-  fields:
-    name: "patient_medication_indication_anticoagulation"
-    name_de: "Patientenmedikation - Antikoagulation"
-    name_en: "Patient Medication - Anticoagulation"
-    description: "Patient medication - anticoagulation"
-    requirement_set_type: "any"
-    requirements:
-      - "indication_non_valvular_af_apixaban_is_defined_in_requirement"
-      - "indication_after_hip_apixaban_is_defined_in_requirement"
-      - "indication_after_knee_apixaban_is_defined_in_requirement"
-    
-
-- models: endoreg_db.requirement_set
-  fields:
-    name: "high_bleed_risk_endoscopy_w_patient_w_anticoagulation"
-    name_de: "Endoskopie - hohes Blutungsrisiko mit generischen Patientenanforderungen"
-    name_en: "High Bleed Risk Endoscopy with Generic Patient Requirements"
-    description: "High bleed risk endoscopy with generic patient requirements"
-    requirement_set_type: "all"
-    links_to_sets:
-      - "endoscopy_bleeding_risk_high"
-      - "generic_patient"
-      - "patient_medication_indication_anticoagulation"