endoreg-db 0.8.8.0__py3-none-any.whl → 0.8.8.9__py3-none-any.whl

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  1. endoreg_db/data/__init__.py +22 -8
  2. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +0 -1
  3. endoreg_db/data/examination/examinations/data.yaml +114 -14
  4. endoreg_db/data/examination/time-type/data.yaml +0 -3
  5. endoreg_db/data/examination_indication/endoscopy.yaml +108 -173
  6. endoreg_db/data/examination_indication_classification/endoscopy.yaml +0 -70
  7. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +33 -37
  8. endoreg_db/data/finding/00_generic.yaml +35 -0
  9. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  10. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  11. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  12. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  13. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  14. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  15. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  16. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  17. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  18. endoreg_db/data/finding_classification/{colonoscopy_bowel_preparation.yaml → 02_colonoscopy_baseline.yaml} +35 -20
  19. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  20. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  21. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  22. endoreg_db/data/finding_classification_choice/{yes_no_na.yaml → 00_generic.yaml} +5 -1
  23. endoreg_db/data/finding_classification_choice/{examination_setting_generic_types.yaml → 00_generic_baseline.yaml} +10 -2
  24. endoreg_db/data/finding_classification_choice/{complication_generic_types.yaml → 00_generic_complication.yaml} +1 -1
  25. endoreg_db/data/finding_classification_choice/{histology.yaml → 00_generic_histology.yaml} +1 -4
  26. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  27. endoreg_db/data/finding_classification_choice/{bowel_preparation.yaml → 02_colonoscopy_bowel_preparation.yaml} +1 -30
  28. endoreg_db/data/{_examples/finding_classification_choice/colonoscopy_not_complete_reason.yaml → finding_classification_choice/02_colonoscopy_generic.yaml} +1 -1
  29. endoreg_db/data/finding_classification_choice/{histology_polyp.yaml → 02_colonoscopy_histology.yaml} +1 -1
  30. endoreg_db/data/{_examples/finding_classification_choice/colonoscopy_location.yaml → finding_classification_choice/02_colonoscopy_location.yaml} +23 -4
  31. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  32. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  33. endoreg_db/data/{_examples/finding_classification_choice/colon_lesion_paris.yaml → finding_classification_choice/02_colonoscopy_polyp_morphology.yaml} +26 -8
  34. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  35. endoreg_db/data/finding_classification_type/{colonoscopy_basic.yaml → 00_generic.yaml} +18 -13
  36. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  37. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  38. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  39. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  40. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  41. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  42. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  43. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  44. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  45. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  46. endoreg_db/data/finding_type/data.yaml +8 -12
  47. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  48. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  49. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +0 -2
  50. endoreg_db/data/requirement_set/90_coloreg.yaml +20 -8
  51. endoreg_db/exceptions.py +0 -1
  52. endoreg_db/forms/examination_form.py +1 -1
  53. endoreg_db/helpers/data_loader.py +124 -52
  54. endoreg_db/helpers/default_objects.py +116 -81
  55. endoreg_db/import_files/__init__.py +27 -0
  56. endoreg_db/import_files/context/__init__.py +7 -0
  57. endoreg_db/import_files/context/default_sensitive_meta.py +81 -0
  58. endoreg_db/import_files/context/ensure_center.py +17 -0
  59. endoreg_db/import_files/context/file_lock.py +66 -0
  60. endoreg_db/import_files/context/import_context.py +43 -0
  61. endoreg_db/import_files/context/validate_directories.py +56 -0
  62. endoreg_db/import_files/file_storage/__init__.py +15 -0
  63. endoreg_db/import_files/file_storage/create_report_file.py +76 -0
  64. endoreg_db/import_files/file_storage/create_video_file.py +75 -0
  65. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +39 -0
  66. endoreg_db/import_files/file_storage/state_management.py +400 -0
  67. endoreg_db/import_files/file_storage/storage.py +36 -0
  68. endoreg_db/import_files/import_service.md +26 -0
  69. endoreg_db/import_files/processing/__init__.py +11 -0
  70. endoreg_db/import_files/processing/report_processing/report_anonymization.py +94 -0
  71. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  72. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  73. endoreg_db/import_files/processing/video_processing/video_cleanup_on_error.py +119 -0
  74. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  75. endoreg_db/import_files/pseudonymization/k_anonymity.py +182 -0
  76. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +128 -0
  77. endoreg_db/import_files/report_import_service.py +141 -0
  78. endoreg_db/import_files/video_import_service.py +150 -0
  79. endoreg_db/management/commands/import_report.py +130 -65
  80. endoreg_db/management/commands/import_video_with_classification.py +1 -1
  81. endoreg_db/management/commands/load_ai_model_data.py +5 -5
  82. endoreg_db/management/commands/load_ai_model_label_data.py +9 -7
  83. endoreg_db/management/commands/load_base_db_data.py +5 -134
  84. endoreg_db/management/commands/load_contraindication_data.py +14 -16
  85. endoreg_db/management/commands/load_disease_classification_choices_data.py +15 -18
  86. endoreg_db/management/commands/load_disease_classification_data.py +15 -18
  87. endoreg_db/management/commands/load_disease_data.py +25 -28
  88. endoreg_db/management/commands/load_endoscope_data.py +20 -27
  89. endoreg_db/management/commands/load_event_data.py +14 -16
  90. endoreg_db/management/commands/load_examination_data.py +31 -44
  91. endoreg_db/management/commands/load_examination_indication_data.py +20 -21
  92. endoreg_db/management/commands/load_finding_data.py +52 -80
  93. endoreg_db/management/commands/load_information_source.py +21 -23
  94. endoreg_db/management/commands/load_lab_value_data.py +17 -26
  95. endoreg_db/management/commands/load_medication_data.py +13 -12
  96. endoreg_db/management/commands/load_organ_data.py +15 -19
  97. endoreg_db/management/commands/load_pdf_type_data.py +19 -18
  98. endoreg_db/management/commands/load_profession_data.py +14 -17
  99. endoreg_db/management/commands/load_qualification_data.py +20 -23
  100. endoreg_db/management/commands/load_report_reader_flag_data.py +17 -19
  101. endoreg_db/management/commands/load_requirement_data.py +14 -20
  102. endoreg_db/management/commands/load_risk_data.py +7 -6
  103. endoreg_db/management/commands/load_shift_data.py +20 -23
  104. endoreg_db/management/commands/load_tag_data.py +8 -11
  105. endoreg_db/management/commands/load_unit_data.py +17 -19
  106. endoreg_db/management/commands/start_filewatcher.py +46 -37
  107. endoreg_db/management/commands/validate_video_files.py +1 -5
  108. endoreg_db/migrations/0001_initial.py +1360 -1812
  109. endoreg_db/models/administration/person/patient/patient.py +72 -46
  110. endoreg_db/models/label/__init__.py +2 -2
  111. endoreg_db/models/label/annotation/video_segmentation_annotation.py +18 -26
  112. endoreg_db/models/label/label_video_segment/label_video_segment.py +23 -1
  113. endoreg_db/models/media/pdf/raw_pdf.py +136 -64
  114. endoreg_db/models/media/pdf/report_reader/report_reader_config.py +34 -10
  115. endoreg_db/models/media/processing_history/__init__.py +5 -0
  116. endoreg_db/models/media/processing_history/processing_history.py +96 -0
  117. endoreg_db/models/media/video/create_from_file.py +101 -31
  118. endoreg_db/models/media/video/video_file.py +125 -105
  119. endoreg_db/models/media/video/video_file_io.py +31 -26
  120. endoreg_db/models/medical/contraindication/README.md +1 -0
  121. endoreg_db/models/medical/examination/examination.py +28 -8
  122. endoreg_db/models/medical/examination/examination_indication.py +13 -79
  123. endoreg_db/models/medical/examination/examination_time.py +8 -3
  124. endoreg_db/models/medical/finding/finding.py +5 -12
  125. endoreg_db/models/medical/finding/finding_classification.py +18 -37
  126. endoreg_db/models/medical/finding/finding_intervention.py +7 -9
  127. endoreg_db/models/medical/hardware/endoscope.py +6 -0
  128. endoreg_db/models/medical/patient/medication_examples.py +5 -1
  129. endoreg_db/models/medical/patient/patient_finding.py +1 -1
  130. endoreg_db/models/metadata/pdf_meta.py +22 -10
  131. endoreg_db/models/metadata/sensitive_meta.py +3 -0
  132. endoreg_db/models/metadata/sensitive_meta_logic.py +200 -124
  133. endoreg_db/models/other/information_source.py +27 -6
  134. endoreg_db/models/report/__init__.py +0 -0
  135. endoreg_db/models/report/images.py +0 -0
  136. endoreg_db/models/report/report.py +6 -0
  137. endoreg_db/models/requirement/requirement.py +59 -399
  138. endoreg_db/models/requirement/requirement_operator.py +86 -98
  139. endoreg_db/models/state/audit_ledger.py +4 -5
  140. endoreg_db/models/state/raw_pdf.py +69 -30
  141. endoreg_db/models/state/video.py +64 -49
  142. endoreg_db/models/upload_job.py +33 -9
  143. endoreg_db/models/utils.py +27 -23
  144. endoreg_db/queries/__init__.py +3 -1
  145. endoreg_db/schemas/examination_evaluation.py +1 -1
  146. endoreg_db/serializers/__init__.py +2 -8
  147. endoreg_db/serializers/label_video_segment/label_video_segment.py +2 -29
  148. endoreg_db/serializers/meta/__init__.py +1 -6
  149. endoreg_db/serializers/misc/sensitive_patient_data.py +50 -26
  150. endoreg_db/serializers/patient_examination/patient_examination.py +3 -3
  151. endoreg_db/serializers/pdf/anony_text_validation.py +39 -23
  152. endoreg_db/serializers/video/video_file_list.py +65 -34
  153. endoreg_db/services/__old/pdf_import.py +1487 -0
  154. endoreg_db/services/__old/video_import.py +1306 -0
  155. endoreg_db/services/anonymization.py +63 -26
  156. endoreg_db/services/lookup_service.py +28 -28
  157. endoreg_db/services/lookup_store.py +2 -2
  158. endoreg_db/services/pdf_import.py +0 -1480
  159. endoreg_db/services/report_import.py +10 -0
  160. endoreg_db/services/video_import.py +6 -1165
  161. endoreg_db/tasks/upload_tasks.py +79 -70
  162. endoreg_db/tasks/video_ingest.py +8 -4
  163. endoreg_db/urls/__init__.py +0 -14
  164. endoreg_db/urls/ai.py +32 -0
  165. endoreg_db/urls/media.py +21 -24
  166. endoreg_db/utils/dataloader.py +87 -57
  167. endoreg_db/utils/paths.py +110 -46
  168. endoreg_db/utils/pipelines/Readme.md +1 -1
  169. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +97 -0
  170. endoreg_db/views/__init__.py +85 -173
  171. endoreg_db/views/ai/__init__.py +8 -0
  172. endoreg_db/views/ai/label.py +155 -0
  173. endoreg_db/views/anonymization/media_management.py +8 -7
  174. endoreg_db/views/anonymization/overview.py +97 -68
  175. endoreg_db/views/anonymization/validate.py +25 -21
  176. endoreg_db/views/media/__init__.py +5 -20
  177. endoreg_db/views/media/pdf_media.py +109 -65
  178. endoreg_db/views/media/sensitive_metadata.py +163 -148
  179. endoreg_db/views/meta/__init__.py +0 -8
  180. endoreg_db/views/misc/__init__.py +1 -7
  181. endoreg_db/views/misc/upload_views.py +94 -93
  182. endoreg_db/views/report/__init__.py +7 -0
  183. endoreg_db/views/{pdf → report}/reimport.py +45 -24
  184. endoreg_db/views/{pdf/pdf_stream.py → report/report_stream.py} +40 -32
  185. endoreg_db/views/requirement/lookup_store.py +22 -90
  186. endoreg_db/views/video/__init__.py +23 -22
  187. endoreg_db/views/video/correction.py +201 -172
  188. endoreg_db/views/video/reimport.py +1 -1
  189. endoreg_db/views/{media/video_segments.py → video/segments_crud.py} +75 -37
  190. endoreg_db/views/video/{video_meta.py → video_meta_stats.py} +2 -2
  191. endoreg_db/views/video/video_stream.py +7 -8
  192. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.8.9.dist-info}/METADATA +2 -2
  193. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.8.9.dist-info}/RECORD +217 -335
  194. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.8.9.dist-info}/WHEEL +1 -1
  195. endoreg_db/data/_examples/disease.yaml +0 -55
  196. endoreg_db/data/_examples/disease_classification.yaml +0 -13
  197. endoreg_db/data/_examples/disease_classification_choice.yaml +0 -62
  198. endoreg_db/data/_examples/event.yaml +0 -64
  199. endoreg_db/data/_examples/examination.yaml +0 -72
  200. endoreg_db/data/_examples/finding/anatomy_colon.yaml +0 -128
  201. endoreg_db/data/_examples/finding/colonoscopy.yaml +0 -40
  202. endoreg_db/data/_examples/finding/colonoscopy_bowel_prep.yaml +0 -56
  203. endoreg_db/data/_examples/finding/complication.yaml +0 -16
  204. endoreg_db/data/_examples/finding/data.yaml +0 -105
  205. endoreg_db/data/_examples/finding/examination_setting.yaml +0 -16
  206. endoreg_db/data/_examples/finding/medication_related.yaml +0 -18
  207. endoreg_db/data/_examples/finding/outcome.yaml +0 -12
  208. endoreg_db/data/_examples/finding_classification/colonoscopy_bowel_preparation.yaml +0 -68
  209. endoreg_db/data/_examples/finding_classification/colonoscopy_jnet.yaml +0 -22
  210. endoreg_db/data/_examples/finding_classification/colonoscopy_kudo.yaml +0 -25
  211. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_circularity.yaml +0 -20
  212. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_planarity.yaml +0 -24
  213. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_size.yaml +0 -68
  214. endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_surface.yaml +0 -20
  215. endoreg_db/data/_examples/finding_classification/colonoscopy_location.yaml +0 -80
  216. endoreg_db/data/_examples/finding_classification/colonoscopy_lst.yaml +0 -21
  217. endoreg_db/data/_examples/finding_classification/colonoscopy_nice.yaml +0 -20
  218. endoreg_db/data/_examples/finding_classification/colonoscopy_paris.yaml +0 -26
  219. endoreg_db/data/_examples/finding_classification/colonoscopy_sano.yaml +0 -22
  220. endoreg_db/data/_examples/finding_classification/colonoscopy_summary.yaml +0 -53
  221. endoreg_db/data/_examples/finding_classification/complication_generic.yaml +0 -25
  222. endoreg_db/data/_examples/finding_classification/examination_setting_generic.yaml +0 -40
  223. endoreg_db/data/_examples/finding_classification/histology_colo.yaml +0 -51
  224. endoreg_db/data/_examples/finding_classification/intervention_required.yaml +0 -26
  225. endoreg_db/data/_examples/finding_classification/medication_related.yaml +0 -23
  226. endoreg_db/data/_examples/finding_classification/visualized.yaml +0 -33
  227. endoreg_db/data/_examples/finding_classification_choice/bowel_preparation.yaml +0 -78
  228. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_circularity_default.yaml +0 -32
  229. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_jnet.yaml +0 -15
  230. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_kudo.yaml +0 -23
  231. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_lst.yaml +0 -15
  232. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_nice.yaml +0 -17
  233. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_planarity_default.yaml +0 -49
  234. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_sano.yaml +0 -14
  235. endoreg_db/data/_examples/finding_classification_choice/colon_lesion_surface_intact_default.yaml +0 -36
  236. endoreg_db/data/_examples/finding_classification_choice/colonoscopy_size.yaml +0 -82
  237. endoreg_db/data/_examples/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +0 -15
  238. endoreg_db/data/_examples/finding_classification_choice/complication_generic_types.yaml +0 -15
  239. endoreg_db/data/_examples/finding_classification_choice/examination_setting_generic_types.yaml +0 -15
  240. endoreg_db/data/_examples/finding_classification_choice/histology.yaml +0 -24
  241. endoreg_db/data/_examples/finding_classification_choice/histology_polyp.yaml +0 -20
  242. endoreg_db/data/_examples/finding_classification_choice/outcome.yaml +0 -19
  243. endoreg_db/data/_examples/finding_classification_choice/yes_no_na.yaml +0 -11
  244. endoreg_db/data/_examples/finding_classification_type/colonoscopy_basic.yaml +0 -48
  245. endoreg_db/data/_examples/finding_intervention/endoscopy.yaml +0 -43
  246. endoreg_db/data/_examples/finding_intervention/endoscopy_colonoscopy.yaml +0 -168
  247. endoreg_db/data/_examples/finding_intervention/endoscopy_egd.yaml +0 -128
  248. endoreg_db/data/_examples/finding_intervention/endoscopy_ercp.yaml +0 -32
  249. endoreg_db/data/_examples/finding_intervention/endoscopy_eus_lower.yaml +0 -9
  250. endoreg_db/data/_examples/finding_intervention/endoscopy_eus_upper.yaml +0 -36
  251. endoreg_db/data/_examples/finding_intervention_type/endoscopy.yaml +0 -15
  252. endoreg_db/data/_examples/finding_type/data.yaml +0 -43
  253. endoreg_db/data/_examples/requirement/age.yaml +0 -26
  254. endoreg_db/data/_examples/requirement/gender.yaml +0 -25
  255. endoreg_db/data/_examples/requirement_set/01_endoscopy_generic.yaml +0 -48
  256. endoreg_db/data/_examples/requirement_set/colonoscopy_austria_screening.yaml +0 -57
  257. endoreg_db/data/_examples/requirement_set/endoscopy_bleeding_risk.yaml +0 -52
  258. endoreg_db/data/_examples/yaml_examples.xlsx +0 -0
  259. endoreg_db/data/finding/anatomy_colon.yaml +0 -128
  260. endoreg_db/data/finding/colonoscopy.yaml +0 -40
  261. endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +0 -56
  262. endoreg_db/data/finding/complication.yaml +0 -16
  263. endoreg_db/data/finding/data.yaml +0 -105
  264. endoreg_db/data/finding/examination_setting.yaml +0 -16
  265. endoreg_db/data/finding/medication_related.yaml +0 -18
  266. endoreg_db/data/finding/outcome.yaml +0 -12
  267. endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +0 -22
  268. endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +0 -25
  269. endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +0 -20
  270. endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +0 -24
  271. endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +0 -38
  272. endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +0 -20
  273. endoreg_db/data/finding_classification/colonoscopy_location.yaml +0 -49
  274. endoreg_db/data/finding_classification/colonoscopy_lst.yaml +0 -21
  275. endoreg_db/data/finding_classification/colonoscopy_nice.yaml +0 -20
  276. endoreg_db/data/finding_classification/colonoscopy_paris.yaml +0 -26
  277. endoreg_db/data/finding_classification/colonoscopy_sano.yaml +0 -22
  278. endoreg_db/data/finding_classification/colonoscopy_summary.yaml +0 -53
  279. endoreg_db/data/finding_classification/complication_generic.yaml +0 -25
  280. endoreg_db/data/finding_classification/examination_setting_generic.yaml +0 -40
  281. endoreg_db/data/finding_classification/histology_colo.yaml +0 -43
  282. endoreg_db/data/finding_classification/intervention_required.yaml +0 -26
  283. endoreg_db/data/finding_classification/medication_related.yaml +0 -23
  284. endoreg_db/data/finding_classification/visualized.yaml +0 -33
  285. endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +0 -32
  286. endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +0 -15
  287. endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +0 -23
  288. endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +0 -15
  289. endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +0 -17
  290. endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +0 -57
  291. endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +0 -49
  292. endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +0 -14
  293. endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +0 -36
  294. endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +0 -229
  295. endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +0 -19
  296. endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +0 -82
  297. endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +0 -15
  298. endoreg_db/data/finding_classification_choice/outcome.yaml +0 -19
  299. endoreg_db/data/finding_intervention/endoscopy.yaml +0 -43
  300. endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +0 -168
  301. endoreg_db/data/finding_intervention/endoscopy_egd.yaml +0 -128
  302. endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +0 -32
  303. endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +0 -9
  304. endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +0 -36
  305. endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +0 -79
  306. endoreg_db/data/requirement/age.yaml +0 -26
  307. endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +0 -45
  308. endoreg_db/data/requirement/disease_cardiovascular.yaml +0 -79
  309. endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +0 -41
  310. endoreg_db/data/requirement/disease_hepatology.yaml +0 -12
  311. endoreg_db/data/requirement/disease_misc.yaml +0 -12
  312. endoreg_db/data/requirement/disease_renal.yaml +0 -96
  313. endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +0 -59
  314. endoreg_db/data/requirement/event_cardiology.yaml +0 -251
  315. endoreg_db/data/requirement/event_requirements.yaml +0 -145
  316. endoreg_db/data/requirement/finding_colon_polyp.yaml +0 -50
  317. endoreg_db/data/requirement/gender.yaml +0 -25
  318. endoreg_db/data/requirement/lab_value.yaml +0 -441
  319. endoreg_db/data/requirement/medication.yaml +0 -93
  320. endoreg_db/data/requirement_operator/age.yaml +0 -13
  321. endoreg_db/data/requirement_operator/lab_operators.yaml +0 -129
  322. endoreg_db/data/requirement_operator/model_operators.yaml +0 -96
  323. endoreg_db/management/commands/init_default_ai_model.py +0 -112
  324. endoreg_db/management/commands/reset_celery_schedule.py +0 -9
  325. endoreg_db/management/commands/validate_video.py +0 -204
  326. endoreg_db/migrations/0002_requirementset_depends_on.py +0 -18
  327. endoreg_db/migrations/_old/0001_initial.py +0 -1857
  328. endoreg_db/migrations/_old/0002_add_video_correction_models.py +0 -52
  329. endoreg_db/migrations/_old/0003_add_center_display_name.py +0 -30
  330. endoreg_db/migrations/_old/0004_employee_city_employee_post_code_employee_street_and_more.py +0 -68
  331. endoreg_db/migrations/_old/0004_remove_casetemplate_rules_and_more.py +0 -77
  332. endoreg_db/migrations/_old/0005_merge_20251111_1003.py +0 -14
  333. endoreg_db/migrations/_old/0006_sensitivemeta_anonymized_text_and_more.py +0 -68
  334. endoreg_db/migrations/_old/0007_remove_rule_attribute_dtype_remove_rule_rule_type_and_more.py +0 -89
  335. endoreg_db/migrations/_old/0008_remove_event_event_classification_and_more.py +0 -27
  336. endoreg_db/migrations/_old/0009_alter_modelmeta_options_and_more.py +0 -21
  337. endoreg_db/renames.yml +0 -8
  338. endoreg_db/serializers/_old/raw_pdf_meta_validation.py +0 -223
  339. endoreg_db/serializers/_old/raw_video_meta_validation.py +0 -179
  340. endoreg_db/serializers/_old/video.py +0 -71
  341. endoreg_db/serializers/meta/pdf_file_meta_extraction.py +0 -115
  342. endoreg_db/serializers/meta/report_meta.py +0 -53
  343. endoreg_db/serializers/report/__init__.py +0 -9
  344. endoreg_db/serializers/report/mixins.py +0 -45
  345. endoreg_db/serializers/report/report.py +0 -105
  346. endoreg_db/serializers/report/report_list.py +0 -22
  347. endoreg_db/serializers/report/secure_file_url.py +0 -26
  348. endoreg_db/services/requirements_object.py +0 -147
  349. endoreg_db/services/storage_aware_video_processor.py +0 -370
  350. endoreg_db/urls/files.py +0 -6
  351. endoreg_db/urls/label_video_segment_validate.py +0 -33
  352. endoreg_db/urls/label_video_segments.py +0 -46
  353. endoreg_db/views/label/__init__.py +0 -5
  354. endoreg_db/views/label/label.py +0 -15
  355. endoreg_db/views/label_video_segment/__init__.py +0 -16
  356. endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +0 -44
  357. endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +0 -50
  358. endoreg_db/views/label_video_segment/label_video_segment.py +0 -77
  359. endoreg_db/views/label_video_segment/label_video_segment_by_label.py +0 -174
  360. endoreg_db/views/label_video_segment/label_video_segment_detail.py +0 -73
  361. endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +0 -46
  362. endoreg_db/views/label_video_segment/validate.py +0 -226
  363. endoreg_db/views/media/segments.py +0 -71
  364. endoreg_db/views/meta/available_files_list.py +0 -146
  365. endoreg_db/views/meta/report_meta.py +0 -53
  366. endoreg_db/views/meta/sensitive_meta_detail.py +0 -85
  367. endoreg_db/views/misc/secure_file_serving_view.py +0 -80
  368. endoreg_db/views/misc/secure_file_url_view.py +0 -84
  369. endoreg_db/views/misc/secure_url_validate.py +0 -79
  370. endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +0 -164
  371. endoreg_db/views/patient_finding_location/__init__.py +0 -5
  372. endoreg_db/views/patient_finding_location/pfl_create.py +0 -70
  373. endoreg_db/views/patient_finding_morphology/__init__.py +0 -5
  374. endoreg_db/views/patient_finding_morphology/pfm_create.py +0 -70
  375. endoreg_db/views/pdf/__init__.py +0 -8
  376. endoreg_db/views/video/segmentation.py +0 -274
  377. endoreg_db/views/video/task_status.py +0 -49
  378. endoreg_db/views/video/timeline.py +0 -46
  379. endoreg_db/views/video/video_analyze.py +0 -52
  380. /endoreg_db/data/requirement/{colon_polyp_intervention.yaml → old/colon_polyp_intervention.yaml} +0 -0
  381. /endoreg_db/data/{_examples/requirement → requirement/old}/colonoscopy_baseline_austria.yaml +0 -0
  382. /endoreg_db/data/requirement/{coloreg_colon_polyp.yaml → old/coloreg_colon_polyp.yaml} +0 -0
  383. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_cardiovascular.yaml +0 -0
  384. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_classification_choice_cardiovascular.yaml +0 -0
  385. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_hepatology.yaml +0 -0
  386. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_misc.yaml +0 -0
  387. /endoreg_db/data/{_examples/requirement → requirement/old}/disease_renal.yaml +0 -0
  388. /endoreg_db/data/{_examples/requirement → requirement/old}/endoscopy_bleeding_risk.yaml +0 -0
  389. /endoreg_db/data/{_examples/requirement → requirement/old}/event_cardiology.yaml +0 -0
  390. /endoreg_db/data/{_examples/requirement → requirement/old}/event_requirements.yaml +0 -0
  391. /endoreg_db/data/{_examples/requirement → requirement/old}/finding_colon_polyp.yaml +0 -0
  392. /endoreg_db/{migrations/__init__.py → data/requirement/old/gender.yaml} +0 -0
  393. /endoreg_db/data/{_examples/requirement → requirement/old}/lab_value.yaml +0 -0
  394. /endoreg_db/data/{_examples/requirement → requirement/old}/medication.yaml +0 -0
  395. /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/age.yaml +0 -0
  396. /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/lab_operators.yaml +0 -0
  397. /endoreg_db/data/{_examples/requirement_operator → requirement_operator/_old}/model_operators.yaml +0 -0
  398. /endoreg_db/{urls/sensitive_meta.py → import_files/pseudonymization/__init__.py} +0 -0
  399. /endoreg_db/{views/pdf/pdf_stream_views.py → import_files/pseudonymization/pseudonymize.py} +0 -0
  400. /endoreg_db/utils/requirement_operator_logic/{lab_value_operators.py → _old/lab_value_operators.py} +0 -0
  401. /endoreg_db/utils/requirement_operator_logic/{model_evaluators.py → _old/model_evaluators.py} +0 -0
  402. {endoreg_db-0.8.8.0.dist-info → endoreg_db-0.8.8.9.dist-info}/licenses/LICENSE +0 -0
endoreg_db/services/report_import.py ADDED
@@ -0,0 +1,10 @@
1
+ from endoreg_db.import_files.report_import_service import ReportImportService as ris
2
+ from endoreg_db.models import RawPdfFile
3
+ from pathlib import Path
4
+
5
+ class ReportImportService(ris):
6
+ """
7
+ Wrapper for known import of concurrency safe ReportImportService,
8
+ here celery will be implemented in the future.
9
+ 12.02.2025
10
+ """