endoreg-db 0.8.8.0__py3-none-any.whl → 0.8.8.9__py3-none-any.whl

endoreg_db/data/finding/anatomy_colon.yaml

@@ -1,128 +0,0 @@
-- model: endoreg_db.finding
-  fields:
-    name: "cecum"
-    description: "Anatomical structure: Cecum"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-
-    finding_types: ["anatomy", "anatomy_colon"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "terminal_ileum"
-    description: "Anatomical structure: Terminal ileum"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["anatomy", "anatomy_colon"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "ileocecal_valve"
-    description: "Anatomical structure: Ileocecal valve"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["anatomy", "anatomy_colon"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "ascending_colon"
-    description: "Anatomical structure: Ascending colon"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["anatomy", "anatomy_colon"]
-
- # "right_flexure",
-- model: endoreg_db.finding
-  fields:
-    name: "right_flexure"
-    description: "Anatomical structure: Right flexure"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["anatomy", "anatomy_colon"]
-
-# "transverse_colon",
-- model: endoreg_db.finding
-  fields:
-    name: "transverse_colon"
-    description: "Anatomical structure: Transverse colon"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["anatomy", "anatomy_colon"]
-
-# "left_flexure",
-- model: endoreg_db.finding
-  fields:
-    name: "left_flexure"
-    description: "Anatomical structure: Left flexure"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["anatomy", "anatomy_colon"]
-
-# "descending_colon",
-- model: endoreg_db.finding
-  fields:
-    name: "descending_colon"
-    description: "Anatomical structure: Descending colon"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["anatomy", "anatomy_colon"]
-
-# "sigmoid_colon",
-- model: endoreg_db.finding
-  fields:
-    name: "sigmoid_colon"
-    description: "Anatomical structure: Sigmoid colon"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["anatomy", "anatomy_colon"]
-
-# "rectum",
-- model: endoreg_db.finding
-  fields:
-    name: "rectum"
-    description: "Anatomical structure: Rectum"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["anatomy", "anatomy_colon"]
-
-# "rectum_anus",
-- model: endoreg_db.finding
-  fields:
-    name: "rectum_anus"
-    description: "Anatomical structure: Rectum and anus"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["anatomy", "anatomy_colon"]

endoreg_db/data/finding/colonoscopy.yaml

@@ -1,40 +0,0 @@
-- model: endoreg_db.finding
-  fields:
-    name: "colon_polyp"
-    name_de: "Kolonpolyp"
-    name_en: "Colon Polyp"
-
-    finding_interventions:
-      [
-        "colon_lesion_polypectomy_cold_snare",
-        "colon_lesion_polypectomy_hot_snare",
-        "colon_lesion_injection_liftup",
-        "colon_lesion_injection_vasoactive",
-        "colon_lesion_biopsy",
-        "colon_lesion_emr",
-        "colon_lesion_esd",
-        "colon_lesion_eftr",
-        "colon_lesion_clip",
-      ]
-    examinations: ["colonoscopy", "colonoscopy_austria_screening"]
-
-    finding_types: ["macroscopic"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "colonoscopy_complete"
-    examinations:
-      [
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["summary"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "colonoscopy_austria_screening_findings_summary"
-    examinations:
-      [
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["summary"]

endoreg_db/data/finding/colonoscopy_bowel_prep.yaml

@@ -1,56 +0,0 @@
-- model: endoreg_db.finding
-  fields:
-    name: "bowel_preparation_lc"
-    name_de: "Darmvorbereitung (Linkes Kolon)"
-    name_en: "Bowel Preparation (Left Colon)"
-    examinations:
-      [
-        "colonoscopy",
-      ]
-
-    finding_types: ["macroscopic"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "bowel_preparation_tc"
-    name_de: "Darmvorbereitung (Kolon Transversum)"
-    name_en: "Bowel Preparation (Transverse Colon)"
-    examinations:
-      [
-        "colonoscopy",
-      ]
-
-    finding_types: ["macroscopic"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "bowel_preparation_rc"
-    name_de: "Darmvorbereitung (Rechtes Kolon)"
-    name_en: "Bowel Preparation (Right Colon)"
-    examinations:
-      [
-        "colonoscopy",
-      ]
-
-    finding_types: ["macroscopic"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "bowel_preparation_simplified"
-    name_de: "Darmvorbereitung (Vereinfacht)"
-    name_en: "Bowel Preparation (Simplified)"
-    examinations:
-      [
-        "colonoscopy",
-      ]
-
-    finding_types: ["macroscopic"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "bowel_prep_screening_austria"
-    examinations: 
-      [
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: ["macroscopic"]

endoreg_db/data/finding/complication.yaml

@@ -1,16 +0,0 @@
-- model: endoreg_db.finding
-  fields:
-    name: "complication"
-    examinations: [
-      "gastroscopy",
-      "endosonography_upper_gi",
-      "endosonography_lower_gi",
-      "ercp",
-      "small_bowel_endoscopy",
-      "capsule_endoscopy",
-      "percutaneous_transhepatic_biliary_drainage",
-      "colonoscopy",
-      "colonoscopy_austria_screening",
-    ]
-
-    finding_types: ["complication"]

endoreg_db/data/finding/data.yaml

@@ -1,105 +0,0 @@
-- model: endoreg_db.finding
-  fields:
-    name: "placeholder"
-    name_de: "Platzhalter"
-    name_en: "Placeholder"
-    description: "This is a placeholder finding."
-
-- model: endoreg_db.finding
-  fields:
-    name: "post-intervention-wound"
-    name_de: "Postinterventionelle Wunde"
-    finding_interventions: ["colon_lesion_clip"]
-    examinations: [
-      "colonoscopy"
-      ]
-
-    finding_types: ["macroscopic"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "tumor"
-    name_de: "Tumor"
-    name_en: "Tumor"
-    finding_interventions: []
-    examinations:
-      [
-        "colonoscopy",
-        "endosonography_upper_gi",
-        "endosonography_lower_gi",
-        "ercp",
-        "small_bowel_endoscopy",
-        "capsule_endoscopy",
-      ]
-
-    finding_types: ["macroscopic"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "inflammation"
-    name_de: "Entzündung"
-    name_en: "Inflammation"
-    finding_interventions: []
-    examinations:
-      [
-        "colonoscopy",
-        "endosonography_upper_gi",
-        "endosonography_lower_gi",
-        "ercp",
-        "small_bowel_endoscopy",
-        "capsule_endoscopy",
-      ]
-    finding_types: ["macroscopic"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "erosion"
-    name_de: "Erosion"
-    name_en: "Erosion"
-    finding_interventions: []
-    examinations:
-      [
-        "colonoscopy",
-        "endosonography_upper_gi",
-        "endosonography_lower_gi",
-        "ercp",
-        "small_bowel_endoscopy",
-        "capsule_endoscopy",
-      ]
-
-    finding_types: ["macroscopic"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "ulcer"
-    name_de: "Ulcus"
-    name_en: "Ulcer"
-    finding_interventions: []
-    examinations:
-      [
-        "colonoscopy",
-        "endosonography_upper_gi",
-        "endosonography_lower_gi",
-        "ercp",
-        "small_bowel_endoscopy",
-        "capsule_endoscopy",
-      ]
-    finding_types: ["macroscopic"]
-
-- model: endoreg_db.finding
-  fields:
-    name: "scar"
-    name_de: "Narbe"
-    name_en: "Scar"
-    finding_interventions: []
-    examinations:
-      [
-        "colonoscopy",
-        "endosonography_upper_gi",
-        "endosonography_lower_gi",
-        "ercp",
-        "small_bowel_endoscopy",
-        "capsule_endoscopy",
-      ]
-
-    finding_types: ["macroscopic"]

endoreg_db/data/finding/examination_setting.yaml

@@ -1,16 +0,0 @@
-- model: endoreg_db.finding
-  fields:
-    name: "examination_setting"
-    examinations: [
-      "gastroscopy",
-      "endosonography_upper_gi",
-      "endosonography_lower_gi",
-      "ercp",
-      "small_bowel_endoscopy",
-      "capsule_endoscopy",
-      "percutaneous_transhepatic_biliary_drainage",
-      "colonoscopy",
-      "colonoscopy_austria_screening",
-    ]
-
-    finding_types: ["summary"]

endoreg_db/data/finding/medication_related.yaml

@@ -1,18 +0,0 @@
-- model: endoreg_db.finding
-  fields:
-    name: "sedation"
-    description: "Sedation during an examination"
-    examinations:
-      [
-        "gastroscopy",
-        "endosonography_upper_gi",
-        "endosonography_lower_gi",
-        "ercp",
-        "small_bowel_endoscopy",
-        "capsule_endoscopy",
-        "percutaneous_transhepatic_biliary_drainage",
-        "colonoscopy",
-        "colonoscopy_austria_screening",
-      ]
-
-    finding_types: ["medication_related"]

endoreg_db/data/finding/outcome.yaml

@@ -1,12 +0,0 @@
-- model: endoreg_db.finding
-  fields:
-    name: "colonoscopy_austria_screening_outcome"
-    description: "Outcome of colonoscopy Austria screening."
-    examinations:
-      [
-        "colonoscopy_austria_screening",
-      ]
-    finding_types: 
-      [
-        "summary"
-      ]

endoreg_db/data/finding_classification/colonoscopy_jnet.yaml

@@ -1,22 +0,0 @@
-
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colon_lesion_jnet"
-    name_de: "Kolonläsion - JNET"
-    name_en: "Colon lesion - JNET"
-    classification_types: [
-      "morphology",
-      "colon_lesion_advanced_imaging",
-    ]    
-    examinations: [
-      "colonoscopy"
-    ]
-    findings: [
-      "colon_polyp",
-    ]
-    choices: [
-      "colon_lesion_jnet_1",
-      "colon_lesion_jnet_2a",
-      "colon_lesion_jnet_2b",
-      "colon_lesion_jnet_3",
-    ]

endoreg_db/data/finding_classification/colonoscopy_kudo.yaml

@@ -1,25 +0,0 @@
-
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colon_lesion_kudo"
-    classification_types: [
-      "colon_lesion_advanced_imaging",
-      "morphology"
-    ]
-    name_de: "Oberflächenklassifikation Kolonläsion"
-    name_en: "Colon Lesion Surface Classification"
-    examinations: [
-      "colonoscopy"
-    ]
-    findings: [
-      "colon_polyp",
-    ]
-    choices: [
-      "colon_lesion_kudo_1",
-      "colon_lesion_kudo_2",
-      "colon_lesion_kudo_3s",
-      "colon_lesion_kudo_3l",
-      "colon_lesion_kudo_4",
-      "colon_lesion_kudo_5i",
-      "colon_lesion_kudo_5n",
-    ]

endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml

@@ -1,20 +0,0 @@
-
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colon_lesion_circularity_default"
-    name_de: "Kolonläsion - Zirkularität"
-    name_en: "Colon lesion - circularity"
-    classification_types: [
-      "colon_lesion_circularity",
-      "morphology"
-    ]    
-    examinations: [
-      "colonoscopy"
-    ]
-    findings: [
-      "colon_polyp",
-    ]
-    choices: [
-      "colon_lesion_circularity_false",
-      "colon_lesion_circularity_true"
-    ]

endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml

@@ -1,24 +0,0 @@
-
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colon_lesion_planarity_default"
-    classification_types: [
-      "colon_lesion_planarity",
-      "morphology"
-    ]
-    name_de: "Planaritätsklassifikation Kolonläsion"
-    name_en: "Colon Lesion Planarity Classification"
-    examinations: [
-      "colonoscopy"
-    ]
-    findings: [
-      "colon_polyp",
-    ]
-    choices: [
-      "colon_lesion_planarity_flat", 
-      "colon_lesion_planarity_flat_elevated",
-      "colon_lesion_planarity_sessile",
-      "colon_lesion_planarity_pedunculated",
-      "colon_lesion_planarity_excavated",
-      "colon_lesion_planarity_unknown"
-    ]

endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml

@@ -1,38 +0,0 @@
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colon_lesion_size_categorical"
-    classification_types: ["colon_lesion_size", "morphology"]
-    name_de: "Größenklassifikation Kolonläsion (kategorisch)"
-    name_en: "Colon Lesion Size Classification (categorical)"
-    examinations: ["colonoscopy"]
-    findings: ["colon_polyp", "tumor", "erosion", "ulcer", "scar"]
-    choices: [
-        "colon_lesion_size_categorical_diminutive", # 0 - 5 mm
-        "colon_lesion_size_categorical_small", # 6 - 9 mm
-        "colon_lesion_size_categorical_medium", # 10 - 20 mm
-        "colon_lesion_size_categorical_large", # 21+ mm
-      ]
-
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colon_lesion_size_mm"
-    classification_types: ["colon_lesion_size", "morphology"]
-    name_de: "Größenklassifikation Kolonläsion (numerisch)"
-    name_en: "Colon Lesion Size Classification (numerical)"
-    examinations: ["colonoscopy"]
-    findings: ["colon_polyp", "tumor", "erosion", "ulcer", "scar"]
-    choices: ["colon_lesion_size_oval_mm"]
-
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colon_lesion_size_austria_categorical"
-    classification_types: ["colon_lesion_size", "morphology"]
-    examinations: ["colonoscopy_austria_screening"]
-    findings: ["colon_polyp"]
-    choices:
-      [
-        "colon_lesion_size_austria_categorical_0_5",
-        "colon_lesion_size_austria_categorical_6_9",
-        "colon_lesion_size_austria_categorical_10_20",
-        "colon_lesion_size_austria_categorical_21_x",
-      ]

endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml

@@ -1,20 +0,0 @@
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colon_lesion_surface_intact_default"
-    classification_types: [
-      "colon_lesion_surface_intact",
-      "morphology"
-    ]
-    name_de: "Oberflächenklassifikation Kolonläsion"
-    name_en: "Colon Lesion Surface Classification"
-    examinations: [
-      "colonoscopy"
-    ]
-    findings: [
-      "colon_polyp",
-    ]
-    choices: [
-      "colon_lesion_surface_intact",
-      "colon_lesion_surface_eroded",
-      "colon_lesion_surface_ulcerated"
-    ]

endoreg_db/data/finding_classification/colonoscopy_location.yaml

@@ -1,49 +0,0 @@
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colonoscopy_location_default"
-    name_de: "Koloskopie Standard"
-    name_en: "Colonoscopy Default"
-    classification_types: ["location"]
-    examinations: ["colonoscopy"]
-    finding_types: ["macroscopic"]
-    findings: ["colon_polyp", "tumor", "erosion", "ulcer", "scar"]
-    choices:
-      [
-        "terminal_ileum",
-        "cecum",
-        "ascending_colon",
-        "right_flexure",
-        "transverse_colon",
-        "left_flexure",
-        "descending_colon",
-        "sigmoid_colon",
-        "rectum",
-        "anal_canal",
-      ]
-
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colonoscopy_location_coarse"
-    name_de: "Koloskopie Grob"
-    name_en: "Colonoscopy Coarse"
-    classification_types: ["location"]
-    examinations: ["colonoscopy"]
-    finding_types: ["macroscopic"]
-    findings: [
-        "colon_polyp",
-        # "tumor",
-        # "erosion",
-        # "ulcer",
-        # "scar"
-      ]
-    choices: ["left_colon", "right_colon", "rectum"]
-
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colonoscopy_austria_screening_location"
-    name_de: "Koloskopie Österreich Screening Lokalisation"
-    name_en: "Colonoscopy Austria Screening Location"
-    classification_types: ["location"]
-    examinations: ["colonoscopy_austria_screening"]
-    findings: ["colon_polyp"]
-    choices: ["left_colon", "right_colon", "sigmoid_colon", "rectum"]

endoreg_db/data/finding_classification/colonoscopy_lst.yaml

@@ -1,21 +0,0 @@
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colon_lesion_lst"
-    classification_types: [
-      "colon_lesion_shape",
-      "morphology"
-    ]
-    name_de: "Oberflächenklassifikation Kolonläsion"
-    name_en: "Colon Lesion Surface Classification"
-    examinations: [
-      "colonoscopy"
-    ]
-    findings: [
-      "colon_polyp",
-    ]
-    choices: [
-      "colon_lesion_lst_granular_homogeneous",
-      "colon_lesion_lst_granular_nodular_mixed",
-      "colon_lesion_lst_non_granular_flat_elevated",
-      "colon_lesion_lst_non_granular_pseudodepressed"
-    ]

endoreg_db/data/finding_classification/colonoscopy_nice.yaml

@@ -1,20 +0,0 @@
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colon_lesion_nice"
-    classification_types: [
-      "colon_lesion_advanced_imaging",
-      "morphology"
-    ]
-    name_de: "Kolonläsion - NICE"
-    name_en: "Colon lesion - NICE"
-    examinations: [
-      "colonoscopy"
-    ]
-    findings: [
-      "colon_polyp",
-    ]
-    choices: [
-      "colon_lesion_NICE_type_1",
-      "colon_lesion_NICE_type_2",
-      "colon_lesion_NICE_type_3"
-    ]

endoreg_db/data/finding_classification/colonoscopy_paris.yaml

@@ -1,26 +0,0 @@
-
-- model: endoreg_db.finding_classification
-  fields:
-    name: "colon_lesion_paris"
-    classification_types: [
-      "colon_lesion_shape",
-      "morphology"
-    ]
-    name_de: "Formklassifikation Kolonläsion"
-    name_en: "Colon Lesion Shape Classification"
-    examinations: [
-      "colonoscopy"
-    ]
-    findings: [
-      "colon_polyp",
-    ]
-    choices: [
-      "colon_paris_Is", # maps to colon_lesion_planarity_sessile
-      "colon_paris_Ip", # colon_lesion_planarity_pedunculated
-      "colon_paris_IIa", 
-      "colon_paris_IIb",
-      "colon_paris_IIc",
-      "colon_paris_III",
-      "colon_paris_IIa_IIc",
-      "colon_paris_IIb_IIc"
-    ]