endoreg-db 0.5.2__py3-none-any.whl → 0.6.0__py3-none-any.whl

endoreg_db/management/commands/load_endoscopy_processor_data.py

@@ -1,45 +0,0 @@
-from django.conf import settings
-import os
-from django.core.management.base import BaseCommand
-from ...models import EndoscopyProcessor
-from ...utils import load_model_data_from_yaml
-from ...data import ENDOSCOPY_PROCESSOR_DATA_DIR
-
-SOURCE_DIR = ENDOSCOPY_PROCESSOR_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
-
-MODEL_0 = EndoscopyProcessor
-
-IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
-    MODEL_0.__name__,
-]
-
-IMPORT_METADATA = {
-    MODEL_0.__name__: {
-        "dir": SOURCE_DIR, # e.g. "interventions"
-        "model": MODEL_0, # e.g. Intervention
-        "foreign_keys": [], # e.g. ["intervention_types"]
-        "foreign_key_models": [] # e.g. [InterventionType]
-    }
-}
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_MODELS:
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
-            )

endoreg_db/management/commands/load_event_data.py

@@ -1,41 +0,0 @@
-from django.core.management.base import BaseCommand
-from endoreg_db.models import Event
-from ...utils import load_model_data_from_yaml
-from ...data import EVENT_DATA_DIR as SOURCE_DIR
-
-MODEL_0 = Event
-
-IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
-    MODEL_0.__name__,
-]
-
-IMPORT_METADATA = {
-    MODEL_0.__name__: {
-        "dir": SOURCE_DIR, # e.g. "interventions"
-        "model": MODEL_0, # e.g. Intervention
-        "foreign_keys": [], # e.g. ["intervention_types"]
-        "foreign_key_models": [] # e.g. [InterventionType]
-    }
-}
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_MODELS:
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
-            )

endoreg_db/management/commands/load_examination_data.py

@@ -1,75 +0,0 @@
-from django.conf import settings
-from django.core.management.base import BaseCommand
-from ...models import (
-    Examination,
-    ExaminationType,  # Replace 'your_app_name' with the actual app name
-    ExaminationTime,
-    ExaminationTimeType,
-)
-import os
-from ...utils import load_model_data_from_yaml
-from ...data import EXAMINATION_DATA_DIR
-
-SOURCE_DIR = EXAMINATION_DATA_DIR 
-
-IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
-    "ExaminationType",
-    "Examination",
-    "ExaminationTimeType",
-    "ExaminationTime"
-]
-
-IMPORT_METADATA = {
-    # "": { # same as model name in "import models", e.g. "Intervention"
-    #     "subdir": os.path.join(SOURCE_DIR,""), # e.g. "interventions"
-    #     "model": None, # e.g. Intervention
-    #     "foreign_keys": [], # e.g. ["intervention_types"]
-    #     "foreign_key_models": [] # e.g. [InterventionType]
-    # },
-    "ExaminationType": {
-        "dir": os.path.join(SOURCE_DIR,"type"), # e.g. "interventions"
-        "model": ExaminationType, # e.g. Intervention
-        "foreign_keys": [], # e.g. ["intervention_types"]
-        "foreign_key_models": [] # e.g. [InterventionType]
-    },
-    "Examination": {
-        "dir": os.path.join(SOURCE_DIR,"examinations"), # e.g. "interventions"
-        "model": Examination, # e.g. Intervention
-        "foreign_keys": ["examination_types"], # e.g. ["intervention_types"]
-        "foreign_key_models": [ExaminationType] # e.g. [InterventionType]
-    },
-    "ExaminationTimeType": {
-        "dir": os.path.join(SOURCE_DIR,"time-type"), # e.g. "interventions"
-        "model": ExaminationTimeType, # e.g. Intervention
-        "foreign_keys": ["examinations"], # e.g. ["intervention_types"]
-        "foreign_key_models": [Examination] # e.g. [InterventionType]
-    },
-    "ExaminationTime": {
-        "dir": os.path.join(SOURCE_DIR,"time"), # e.g. "interventions"
-        "model": ExaminationTime, # e.g. Intervention
-        "foreign_keys": ["time_types"], # e.g. ["intervention_types"]
-        "foreign_key_models": [ExaminationTimeType] # e.g. [InterventionType]
-    },
-}
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_MODELS:
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
-            )

endoreg_db/management/commands/load_g_play_data.py

@@ -1,113 +0,0 @@
-from django.core.management.base import BaseCommand
-from endoreg_db.models import (
-    CaseTemplateRuleType,
-    CaseTemplateRuleValueType,
-    CaseTemplateRuleValue,
-    CaseTemplateRule,
-    CaseTemplateType,
-    CaseTemplate,
-    SingleCategoricalValueDistribution,
-    NumericValueDistribution,
-    MultipleCategoricalValueDistribution,
-    DateValueDistribution,
-
-    QuizQuestionType,
-    QuizAnswerType,
-    QuizQuestion,
-    QuizAnswer,
-
-    # Other models for ForeignKeys
-    Unit, Center
-)
-from collections import OrderedDict
-
-from ...utils import load_model_data_from_yaml
-from ...data import (
-    CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
-    CASE_TEMPLATE_RULE_DATA_DIR,
-    CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
-    CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
-    CASE_TEMPLATE_TYPE_DATA_DIR,
-    CASE_TEMPLATE_DATA_DIR,
-)
-
-IMPORT_METADATA = OrderedDict({
-    CaseTemplateRuleType.__name__: {
-        "dir": CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
-        "model": CaseTemplateRuleType, 
-        "foreign_keys": [], 
-        "foreign_key_models": [] 
-    },
-    CaseTemplateRuleValueType.__name__: {
-        "dir": CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
-        "model": CaseTemplateRuleValueType, 
-        "foreign_keys": [], 
-        "foreign_key_models": [] 
-    },
-    CaseTemplateRuleValue.__name__: {
-        "dir": CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
-        "model": CaseTemplateRuleValue, 
-        "foreign_keys": ["value_type"], 
-        "foreign_key_models": [CaseTemplateRuleValueType] 
-    },
-    CaseTemplateRule.__name__: {
-        "dir": CASE_TEMPLATE_RULE_DATA_DIR,
-        "model": CaseTemplateRule, 
-        "foreign_keys": [
-            "rule_type", 
-            # "rule_values",
-            "chained_rules", 
-            "value_type",
-            "single_categorical_value_distribution",
-            "numerical_value_distribution",
-            "multiple_categorical_value_distribution",
-            "date_value_distribution"
-        ], 
-        "foreign_key_models": [
-            CaseTemplateRuleType,
-            # CaseTemplateRuleValue,
-            CaseTemplateRule,
-            CaseTemplateRuleValueType,
-            SingleCategoricalValueDistribution,
-            NumericValueDistribution,
-            MultipleCategoricalValueDistribution,
-            DateValueDistribution
-
-        ] 
-    },
-    CaseTemplateType.__name__: {
-        "dir": CASE_TEMPLATE_TYPE_DATA_DIR,
-        "model": CaseTemplateType, 
-        "foreign_keys": [], 
-        "foreign_key_models": [] 
-    },
-    CaseTemplate.__name__: {
-        "dir": CASE_TEMPLATE_DATA_DIR,
-        "model": CaseTemplate, 
-        "foreign_keys": ["template_type", "rules"], 
-        "foreign_key_models": [CaseTemplateType, CaseTemplateRule] 
-    },
-    
-})
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_METADATA.keys():
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
-            )

endoreg_db/management/commands/load_gender_data.py

@@ -1,44 +0,0 @@
-from django.core.management.base import BaseCommand
-from endoreg_db.models import (
-    Gender,
-
-    # Other models for ForeignKeys
-    Unit, Center
-)
-from collections import OrderedDict
-
-from ...utils import load_model_data_from_yaml
-from ...data import (
-    GENDER_DATA_DIR,
-)
-
-IMPORT_METADATA = OrderedDict({
-    Gender.__name__: {
-        "dir": GENDER_DATA_DIR,
-        "model": Gender, 
-        "foreign_keys": [], 
-        "foreign_key_models": [] 
-    },    
-})
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_METADATA.keys():
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
-            )

endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py

@@ -1,133 +0,0 @@
-from django.core.management.base import BaseCommand
-from endoreg_db.models import (
-    EmissionFactor,
-    Resource,
-    Waste,
-    Material,
-    Product,
-    ProductGroup,
-    ReferenceProduct,
-    ProductGroup,
-    TransportRoute,
-    CenterWaste,
-    CenterResource,
-    ProductMaterial,
-    ProductWeight,
-
-    # Other models for ForeignKeys
-    Unit, Center
-)
-from collections import OrderedDict
-
-from ...utils import load_model_data_from_yaml
-from ...data import (
-    EMISSION_FACTOR_DATA_DIR,
-    RESOURCE_DATA_DIR,
-    WASTE_DATA_DIR,
-    MATERIAL_DATA_DIR,
-    PRODUCT_DATA_DIR,
-    PRODUCT_GROUP_DATA_DIR,
-    REFERENCE_PRODUCT_DATA_DIR,
-    TRANSPORT_ROUTE_DATA_DIR,
-    CENTER_WASTE_DATA_DIR,
-    CENTER_RESOURCE_DATA_DIR,
-    PRODUCT_MATERIAL_DATA_DIR,
-    PRODUCT_WEIGHT_DATA_DIR,
-)
-
-IMPORT_METADATA = OrderedDict({
-    EmissionFactor.__name__: {
-        "dir": EMISSION_FACTOR_DATA_DIR,
-        "model": EmissionFactor, 
-        "foreign_keys": ["unit"], 
-        "foreign_key_models": [Unit] 
-    },
-    Resource.__name__: {
-        "dir": RESOURCE_DATA_DIR,
-        "model": Resource,
-        "foreign_keys": [],
-        "foreign_key_models": []
-    },
-    Waste.__name__: {
-        "dir": WASTE_DATA_DIR,
-        "model": Waste,
-        "foreign_keys": [],
-        "foreign_key_models": []
-    },
-    Material.__name__: {
-        "dir": MATERIAL_DATA_DIR,
-        "model": Material,
-        "foreign_keys": ["emission_factor"],
-        "foreign_key_models": [EmissionFactor]
-    },
-    ProductGroup.__name__: {
-        "dir": PRODUCT_GROUP_DATA_DIR,
-        "model": ProductGroup,
-        "foreign_keys": [],
-        "foreign_key_models": []
-    },
-    TransportRoute.__name__: {
-        "dir": TRANSPORT_ROUTE_DATA_DIR,
-        "model": TransportRoute,
-        "foreign_keys": ["emission_factor", "unit"],
-        "foreign_key_models": [EmissionFactor, Unit]
-    },
-    Product.__name__: {
-        "dir": PRODUCT_DATA_DIR,
-        "model": Product,
-        "foreign_keys": ["product_group", "transport_route"],
-        "foreign_key_models": [ProductGroup, TransportRoute]
-    },
-    ReferenceProduct.__name__: {
-        "dir": REFERENCE_PRODUCT_DATA_DIR,
-        "model": ReferenceProduct,
-        "foreign_keys": ["product","product_group"],
-        "foreign_key_models": [Product,ProductGroup]
-    },
-    CenterWaste.__name__: {
-        "dir": CENTER_WASTE_DATA_DIR,
-        "model": CenterWaste,
-        "foreign_keys": ["waste", "center", "unit", "emission_factor"],
-        "foreign_key_models": [Waste, Center, Unit, EmissionFactor]
-    },
-    CenterResource.__name__: {
-        "dir": CENTER_RESOURCE_DATA_DIR,
-        "model": CenterResource,
-        "foreign_keys": ["center","resource", "unit", "transport_emission_factor", "use_emission_factor"],
-        "foreign_key_models": [Center,Resource, Unit, EmissionFactor, EmissionFactor]
-    },
-    ProductMaterial.__name__: {
-        "dir": PRODUCT_MATERIAL_DATA_DIR,
-        "model": ProductMaterial,
-        "foreign_keys": ["product", "material", "unit"],
-        "foreign_key_models": [Product, Material, Unit]
-    },
-    ProductWeight.__name__: {
-        "dir": PRODUCT_WEIGHT_DATA_DIR,
-        "model": ProductWeight,
-        "foreign_keys": ["product", "unit"],
-        "foreign_key_models": [Product, Unit]
-    }
-})
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_METADATA.keys():
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
-            )

endoreg_db/management/commands/load_information_source.py

@@ -1,45 +0,0 @@
-from django.conf import settings
-import os
-from django.core.management.base import BaseCommand
-from ...models import InformationSource
-from ...utils import load_model_data_from_yaml
-from ...data import INFORMATION_DATA_DIR
-
-SOURCE_DIR = INFORMATION_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
-
-MODEL_0 = InformationSource
-
-IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
-    MODEL_0.__name__,
-]
-
-IMPORT_METADATA = {
-    MODEL_0.__name__: {
-        "dir": SOURCE_DIR, # e.g. "interventions"
-        "model": MODEL_0, # e.g. Intervention
-        "foreign_keys": [], # e.g. ["intervention_types"]
-        "foreign_key_models": [] # e.g. [InterventionType]
-    }
-}
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_MODELS:
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
-            )

endoreg_db/management/commands/load_lab_value_data.py

@@ -1,50 +0,0 @@
-from django.core.management.base import BaseCommand
-from endoreg_db.models import LabValue as MODEL_0
-from endoreg_db.models import PatientLabSampleType
-from ...utils import load_model_data_from_yaml
-from ...data import LAB_VALUE_DATA_DIR as SOURCE_DIR
-from ...data import PATIENT_LAB_SAMPLE_TYPE_DATA_DIR
-
-from endoreg_db.models import Unit
-
-IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
-    MODEL_0.__name__,
-    PatientLabSampleType.__name__
-]
-
-IMPORT_METADATA = {
-    MODEL_0.__name__: {
-        "dir": SOURCE_DIR, # e.g. "interventions"
-        "model": MODEL_0, # e.g. Intervention
-        "foreign_keys": ["default_unit"], # e.g. ["intervention_types"]
-        "foreign_key_models": [Unit] # e.g. [InterventionType]
-    },
-    PatientLabSampleType.__name__: {
-        "dir": PATIENT_LAB_SAMPLE_TYPE_DATA_DIR,
-        "model": PatientLabSampleType,
-        "foreign_keys": [],
-        "foreign_key_models": []
-    }
-}
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_MODELS:
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
-            )

endoreg_db/management/commands/load_label_data.py

@@ -1,67 +0,0 @@
-from django.conf import settings
-from django.core.management.base import BaseCommand
-from ...models import (
-    Label,
-    LabelType,
-    LabelSet
-)
-import os
-from ...utils import load_model_data_from_yaml
-from ...data import LABEL_DATA_DIR
-
-SOURCE_DIR = LABEL_DATA_DIR 
-
-IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
-    "LabelType",
-    "Label",
-    "LabelSet",
-]
-
-IMPORT_METADATA = {
-    # "": { # same as model name in "import models", e.g. "Intervention"
-    #     "subdir": os.path.join(SOURCE_DIR,""), # e.g. "interventions"
-    #     "model": None, # e.g. Intervention
-    #     "foreign_keys": [], # e.g. ["intervention_types"]
-    #     "foreign_key_models": [] # e.g. [InterventionType]
-    # },
-    "LabelType": {
-        "dir": os.path.join(SOURCE_DIR,"label-type"), # e.g. "interventions"
-        "model": LabelType, # e.g. Intervention
-        "foreign_keys": [], # e.g. ["intervention_types"]
-        "foreign_key_models": [] # e.g. [InterventionType]
-    },
-    "Label": {
-        "dir": os.path.join(SOURCE_DIR,"label"), # e.g. "interventions"
-        "model": Label, # e.g. Intervention
-        "foreign_keys": ["label_type"], # e.g. ["intervention_types"]
-        "foreign_key_models": [LabelType] # e.g. [InterventionType]
-    },
-    "LabelSet": {
-        "dir": os.path.join(SOURCE_DIR,"label-set"), # e.g. "interventions"
-        "model": LabelSet, # e.g. Intervention
-        "foreign_keys": ["labels"], # e.g. ["intervention_types"]
-        "foreign_key_models": [Label] # e.g. [InterventionType]
-    },
-}
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_MODELS:
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
-            )

endoreg_db/management/commands/load_logging_data.py

@@ -1,39 +0,0 @@
-from django.core.management.base import BaseCommand
-from endoreg_db.models import LogType as MODEL_0
-from ...utils import load_model_data_from_yaml
-from ...data import LOG_TYPE_DATA_DIR as SOURCE_DIR
-
-IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
-    MODEL_0.__name__,
-]
-
-IMPORT_METADATA = {
-    MODEL_0.__name__: {
-        "dir": SOURCE_DIR, # e.g. "interventions"
-        "model": MODEL_0, # e.g. Intervention
-        "foreign_keys": [], # e.g. ["intervention_types"]
-        "foreign_key_models": [] # e.g. [InterventionType]
-    }
-}
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_MODELS:
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
-            )