endoreg-db 0.5.2__py3-none-any.whl → 0.6.0__py3-none-any.whl

endoreg_db/data/lab_value/renal_function.yaml

@@ -1,11 +0,0 @@
-- model: endoreg_db.lab_value
-  fields:
-    name: "estimated_glomerular_filtration_rate"
-    name_de: "Geschätzte Glomeruläre Filtrationsrate"
-    name_en: "estimated glomerular filtration rate"
-    abbreviation: "eGFR"
-    default_unit: "mililiter per minute per 1.73m^2"
-    default_normal_range: {
-      "min": 60,
-      "max": 120
-    }

endoreg_db/data/label/label/data.yaml

@@ -1,62 +0,0 @@
-# labels are: "appendix", "ileocecal_valve", "polyp", "water_jet", "digital_chromo_endoscopy", "instrument", "wound", "blood", "ileum", "low_quality", "clip", "outside"
-
-- model: endoreg_db.Label
-  fields:
-    name: "appendix"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "ileocecal_valve"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "polyp"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "water_jet"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "digital_chromo_endoscopy"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "instrument"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "wound"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "blood"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "ileum"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "low_quality"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "clip"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "outside"
-    label_type: "classification"
-

endoreg_db/data/label/label-set/data.yaml

@@ -1,18 +0,0 @@
-- model: endoreg_db.LabelSet
-  fields:
-    name: "multilabel_classification"
-    version: 0
-    labels: [
-      "appendix",
-      "ileocecal_valve",
-      "polyp",
-      "water_jet",
-      "digital_chromo_endoscopy",
-      "instrument",
-      "wound",
-      "blood",
-      "ileum",
-      "low_quality",
-      "clip",
-      "outside",
-    ]

endoreg_db/data/label/label-type/data.yaml

@@ -1,7 +0,0 @@
-- model: endoreg_db.LabelType
-  fields:
-    name: "classification"
-
-- model: endoreg_db.LabelType
-  fields:
-    name: "object_detection"

endoreg_db/data/log_type/data.yaml

@@ -1,57 +0,0 @@
-- model: endoreg_db.log_type
-  fields:
-    name: 'service-alive'
-    description: 'Data log type'
-
-- model: endoreg_db.log_type
-  fields:
-    name: 'service-error'
-    description: 'Data log type'
-
-- model: endoreg_db.log_type
-  fields:
-    name: 'service-info'
-    description: 'Data log type'
-
-- model: endoreg_db.log_type
-  fields:
-    name: 'service-warning'
-    description: 'Data log type'
-
-- model: endoreg_db.log_type
-  fields:
-    name: 'service-status'
-    description: 'Data log type'
-
-- model: endoreg_db.log_type
-  fields:
-    name: 'service-task'
-    description: 'Data log type'
-
-- model: endoreg_db.log_type
-  fields:
-    name: 'device-alive'
-    description: 'Data log type'
-
-- model: endoreg_db.log_type
-  fields:
-    name: 'device-error'
-    description: 'Data log type'
-
-# device-status
-- model: endoreg_db.log_type
-  fields:
-    name: 'device-status'
-    description: 'Data log type'
-
-# device-task
-- model: endoreg_db.log_type
-  fields:
-    name: 'device-task'
-    description: 'Data log type'
-
-# device-info
-- model: endoreg_db.log_type
-  fields:
-    name: 'device-info'
-    description: 'Data log type'

endoreg_db/data/material/material.yaml

@@ -1,91 +0,0 @@
-- model: endoreg_db.Material
-  fields:
-    name: cardboard
-    name_de: Pappe
-    name_en: cardboard
-    emission_factor: material_emission_cardboard
-
-- fields:
-    name: foil
-    name_de: Folien
-    name_en: foil
-    emission_factor: material_emission_foil
-  model: endoreg_db.Material
-
-- fields:
-    name: gold
-    name_de: Gold
-    name_en: gold
-    emission_factor: material_emission_gold
-
-
-- fields:
-    name: metal
-    name_de: Metall
-    name_en: metal
-    emission_factor: material_emission_metal
-  model: endoreg_db.Material
-
-- fields:
-    name: nickel
-    name_de: Nickel
-    name_en: nickel
-    emission_factor: material_emission_nickel
-  model: endoreg_db.Material
-
-- fields:
-    name: paper
-    name_de: Papier
-    name_en: paper
-    emission_factor: material_emission_paper
-  model: endoreg_db.Material
-
-- fields:
-    name: paper_coated
-    name_de: Beschichtetes Papier
-    name_en: paper_coated
-    emission_factor: material_emission_paper_coated
-  model: endoreg_db.Material
-
-- fields:
-    name: plastic
-    name_de: Kunststoff
-    name_en: plastic
-    emission_factor: material_emission_plastic
-  model: endoreg_db.Material
-- fields:
-    name: plastic_coated
-    name_de: Kunststoff beschichtet
-    name_en: plastic_coated
-    emission_factor: material_emission_plastic_coated
-  model: endoreg_db.Material
-- fields:
-    name: silicone
-    name_de: Silikon
-    name_en: silicone
-    emission_factor: material_emission_silicone
-  model: endoreg_db.Material
-- fields:
-    name: steel
-    name_de: Stahl
-    name_en: steel
-    emission_factor: material_emission_steel
-  model: endoreg_db.Material
-- fields:
-    name: tantal
-    name_de: Tantal
-    name_en: tantal
-    emission_factor: material_emission_tantal
-  model: endoreg_db.Material
-- fields:
-    name: textile
-    name_de: Textil
-    name_en: textile
-    emission_factor: material_emission_textile
-  model: endoreg_db.Material
-- fields:
-    name: titan
-    name_de: Titan
-    name_en: titan
-    emission_factor: material_emission_titan
-  model: endoreg_db.Material

endoreg_db/data/medication/anticoagulation.yaml

@@ -1,65 +0,0 @@
-- models: endoreg_db.models.medication
-  fields:
-    name: "apixaban"
-    name_de: "Apixaban"
-    name_en: "Apixaban"
-    adapt_to_renal_function: true
-    adapt_to_hepatic_function: true
-    adapt_to_indication: true
-    adapt_to_age: true
-    adapt_to_weight: false
-    adapt_to_risk: true
-    default_unit: "miligram"
-
-- models: endoreg_db.models.medication
-  fields:
-    name: "dabigatran"
-    name_de: "Dabigatran"
-    name_en: "Dabigatran"
-    adapt_to_renal_function: true
-    adapt_to_hepatic_function: true
-    adapt_to_indication: true
-    adapt_to_age: true
-    adapt_to_weight: false
-    adapt_to_risk: true
-    default_unit: "miligram"
-
-- models: endoreg_db.models.medication
-  fields:
-    name: "edoxaban"
-    name_de: "Edoxaban"
-    name_en: "Edoxaban"
-    adapt_to_renal_function: true
-    adapt_to_hepatic_function: true
-    adapt_to_indication: true
-    adapt_to_age: true
-    adapt_to_weight: false
-    adapt_to_risk: true
-    default_unit: "miligram"
-
-- models: endoreg_db.models.medication
-  fields:
-    name: "rivaroxaban"
-    name_de: "Rivaroxaban"
-    name_en: "Rivaroxaban"
-    adapt_to_renal_function: true
-    adapt_to_hepatic_function: true
-    adapt_to_indication: true
-    adapt_to_age: true
-    adapt_to_weight: false
-    adapt_to_risk: true
-    default_unit: "miligram"
-
-- models: endoreg_db.models.medication
-  fields:
-    name: "enoxaparin"
-    name_de: "Enoxaparin"
-    name_en: "Enoxaparin"
-    adapt_to_renal_function: true
-    adapt_to_hepatic_function: false
-    adapt_to_indication: true
-    adapt_to_age: false
-    adapt_to_weight: true
-    adapt_to_risk: true
-    default_unit: "miligram"
-    

endoreg_db/data/medication/tah.yaml

@@ -1,70 +0,0 @@
-# ASS
-- models: endoreg_db.models.medication
-  fields:
-    name: "aspirin"
-    name_de: "Aspririn"
-    name_en: "Aspirin"
-    adapt_to_renal_function: false
-    adapt_to_hepatic_function: false
-    adapt_to_indication: true
-    adapt_to_age: false
-    adapt_to_weight: false
-    adapt_to_risk: false
-    default_unit: "miligram"
-
-# Clopidogrel
-- models: endoreg_db.models.medication
-  fields:
-    name: "clopidogrel"
-    name_de: "Clopidogrel"
-    name_en: "Clopidogrel"
-    adapt_to_renal_function: false
-    adapt_to_hepatic_function: false
-    adapt_to_indication: true
-    adapt_to_age: false
-    adapt_to_weight: false
-    adapt_to_risk: false
-    default_unit: "miligram"
-
-# Prasugrel
-- models: endoreg_db.models.medication
-  fields:
-    name: "prasugrel"
-    name_de: "Prasugrel"
-    name_en: "Prasugrel"
-    adapt_to_renal_function: false
-    adapt_to_hepatic_function: false
-    adapt_to_indication: true
-    adapt_to_age: false
-    adapt_to_weight: false
-    adapt_to_risk: false
-    default_unit: "miligram"
-
-
-# Ticagrelor
-- models: endoreg_db.models.medication
-  fields:
-    name: "ticagrelor"
-    name_de: "Ticagrelor"
-    name_en: "Ticagrelor"
-    adapt_to_renal_function: false
-    adapt_to_hepatic_function: true
-    adapt_to_indication: true
-    adapt_to_age: false
-    adapt_to_weight: false
-    adapt_to_risk: false
-    default_unit: "miligram"
-
-# Tirofiban
-- models: endoreg_db.models.medication
-  fields:
-    name: "tirofiban"
-    name_de: "Tirofiban"
-    name_en: Tirofiban"
-    adapt_to_renal_function: true
-    adapt_to_hepatic_function: true
-    adapt_to_indication: true
-    adapt_to_age: false
-    adapt_to_weight: false
-    adapt_to_risk: false
-    default_unit: "miligram"

endoreg_db/data/medication_indication/anticoagulation.yaml

@@ -1,120 +0,0 @@
-# Quellen: Fachinformationen d. entsprechenden Medikamente
-- model: endoreg_db.medication_indication
-  fields:
-    name: "te_prevention-after_hip-apixaban"
-    events: ["hip_replacement"]
-    medication_schedules: [
-      "apixaban-2.5mg-twice_daily_32d", # min 32d, max 38d
-    ]
-    indication_type: "thromboembolism-prevention-after_hip_replacement"
-    sources: [
-      "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
-    ]
-
-- model: endoreg_db.medication_indication
-  fields:
-    name: "te_prevention-after_knee-apixaban"
-    events: ["knee_replacement"]
-    medication_schedules: [
-      "apixaban-2.5mg-twice_daily_10d", # min 10d, max 14d
-    ]
-    indication_type: "thromboembolism-prevention-after_knee_replacement"
-    sources: [
-      "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
-    ]
-
-- model: endoreg_db.medication_indication
-  fields:
-    name: "te_prevention-non_valvular_af-apixaban"
-    diseases: ["non_valvular_af"]
-    medication_schedules: [
-      "apixaban-5mg-twice_daily", # no limit
-    ]
-    indication_type: "thromboembolism-prevention-non_valvular_af"
-    sources: [
-      "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
-    ]
-
-# - model: endoreg_db.medication_indication
-#   fields:
-#     name: "te_prevention_non_valvular_af-apixaban-ckd_stage_4"
-#     classification_choices: [
-#       "ckd_4"
-#     ]
-#     medication_schedules: [
-#       "apixaban-2.5mg-twice_daily"
-#     ]
-#     indication_type: "thromboembolism-prevention-non_valvular_af"
-#     sources: [
-#       "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
-#     ]
-
-# generally same as ckd4 above but technically different definition
-# Applies for example when risk factors (2 of three: age >= 80; KG <= 60 kg; Kreatinin >= 1.5 mg/dl)
-- model: endoreg_db.medication_indication 
-  fields:
-    name: "te_prevention-non_valvular_af-apixaban-dr" #dr = dose reduction
-    diseases: ["non_valvular_af"]
-    medication_schedules: [
-      "apixaban-2.5mg-twice_daily", # no limit
-    ]
-    indication_type: "thromboembolism-prevention-non_valvular_af"
-    sources: [
-      "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
-    ]
-
-- model: endoreg_db.medication_indication
-  fields:
-    name: "dvt_treatment-apixaban-3mo"
-    events: ["deep_vein_thrombosis"]
-    medication_schedules: [
-      "apixaban-5g-twice_daily_7d", # first 7d of treatment 10 mg twice daily
-      "apixaban-5g-twice_daily_3mo", # no limit
-    ]
-    indication_type: "deep_vein_thrombosis-treatment"
-    sources: [
-      "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
-    ]
-
-- model: endoreg_db.medication_indication
-  fields:
-    name: "pe_treatment-apixaban-3mo"
-    events: ["pulmonary_embolism"]
-    medication_schedules: [
-      "apixaban-5g-twice_daily_7d", # first 7d of treatment 10 mg twice daily
-      "apixaban-5g-twice_daily_3mo", # no limit
-    ]
-    indication_type: "pulmonary_embolism-treatment"
-    sources: [
-      "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
-    ]
-
-- model: endoreg_db.medication_indication
-  fields:
-    name: "pe_treatment-apixaban-6mo"
-    events: ["pulmonary_embolism"]
-    medication_schedules: [
-      "apixaban-5g-twice_daily_7d", # first 7d of treatment 10 mg twice daily
-      "apixaban-5g-twice_daily_6mo", # no limit
-    ]
-    indication_type: "pulmonary_embolism-treatment"
-    sources: [
-      "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
-    ]
-
-- model: endoreg_db.medication_indication
-  fields:
-    name: "te_prevention-recurrent-te-apixaban"
-    events: [
-      "recurrent_thrombembolism"
-    ]
-    medication_schedules: [
-      "apixaban-2.5mg-twice_daily"
-    ]
-    indication_type: "thrombembolism-prevention-recurrent_thrombembolism"
-    sources: [
-      "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
-    ]
-
-# templates to create:
-# medication_schedules:

endoreg_db/data/medication_indication_type/data.yaml

@@ -1,11 +0,0 @@
-- model: endoreg_db.medication_indication_type
-  fields:
-    name: "event"
-    name_de: "Ereignis"
-    name_en: "event"
-
-- model: endoreg_db.medication_indication_type
-  fields:
-    name: "disease"
-    name_de: "Krankheit"
-    name_en: "disease"

endoreg_db/data/medication_indication_type/thrombembolism.yaml

@@ -1,41 +0,0 @@
-- model: endoreg_db.medication_indication_type
-  fields:
-    name: "thromboembolism-prevention-after_hip_replacement"
-    name_de: "Thromboembolie-Prophylaxe nach Hüft-TEP"
-    name_en: "Thromboembolism Prevention after Hip Replacement"
-
-- model: endoreg_db.medication_indication_type
-  fields:
-    name: "thromboembolism-prevention-after_knee_replacement"
-    name_de: "Thromboembolie-Prophylaxe nach Knie-TEP"
-    name_en: "Thromboembolism Prevention after Knee Replacement"
-
-- model: endoreg_db.medication_indication_type
-  fields:
-    name: "thromboembolism-prevention-non_valvular_af"
-    name_de: "Thromboembolie-Prophylaxe bei nicht-valvulärem Vorhofflimmern"
-    name_en: "Thromboembolism Prevention in Non-Valvular Atrial Fibrillation"
-
-- model: endoreg_db.medication_indication_type
-  fields:
-    name: "thromboembolism-prevention-recurrent_thrombembolism"
-    name_de: "Thromboembolie-Prophylaxe bei rezidivierenden Thrombembolien"
-    name_en: "Thromboembolism Prevention in Recurrent Thrombembolism"
-
-- model: endoreg_db.medication_indication_type
-  fields:
-    name: "deep_vein_thrombosis-treatment"
-    name_de: "Thrombose-Behandlung bei tiefer Beinvenenthrombose"
-    name_en: "Deep Vein Thrombosis Treatment"
-
-- model: endoreg_db.medication_indication_type
-  fields:
-    name: "pulmonary_embolism-treatment"
-    name_de: "Thrombose-Behandlung bei Lungenembolie"
-    name_en: "Pulmonary Embolism Treatment"
-
-- model: endoreg_db.medication_indication_type
-  fields:
-    name: "thrombembolism-prevention-recurrent_thrombembolism"
-    name_de: "Thromboembolie-Prophylaxe bei rezidivierenden Thrombembolien"
-    name_en: "Thromboembolism Prevention in Recurrent Thrombembolism"

endoreg_db/data/medication_intake_time/base.yaml

@@ -1,31 +0,0 @@
-- model: medication_intake_time
-  fields:
-    name: "daily-morning"
-    name_de: "täglich, morgens"
-    name_en: "daily, morning"
-    repeats: "daily"
-    time: "07:00:00"
-
-- model: medication_intake_time
-  fields:
-    name: "daily-evening"
-    name_de: "täglich, abends"
-    name_en: "daily, evening"
-    repeats: "daily"
-    time: "19:00:00"
-
-- model: medication_intake_time
-  fields:
-    name: "daily-noon"
-    name_de: "täglich, mittags"
-    name_en: "daily, noon"
-    repeats: "daily"
-    time: "13:00:00"
-
-- model: medication_intake_time
-  fields:
-    name: "daily-night"
-    name_de: "täglich, nachts"
-    name_en: "daily, night"
-    repeats: "daily"
-    time: "01:00:00"

endoreg_db/data/medication_schedule/apixaban.yaml

@@ -1,95 +0,0 @@
-- model: endoreg_db.medication_schedule
-  fields:
-    name: "apixaban-2.5mg-twice_daily_32d"
-    name_de: "Apixaban 2.5mg, 2x täglich, 32 Tage"
-    name_en: "Apixaban 2.5mg, twice daily, 32 days"
-    therapy_duration_d: 32
-    medication: "apixaban"
-    dose: 2.5
-    unit: "miligram"
-    intake_times: [
-      "daily-morning",
-      "daily-evening"
-    ]
-
-- model: endoreg_db.medication_schedule
-  fields:
-    name: "apixaban-2.5mg-twice_daily_10d"
-    name_de: "Apixaban 2.5mg, 2x täglich, 10 Tage"
-    name_en: "Apixaban 2.5mg, twice daily, 10 days"
-    therapy_duration_d: 10
-    medication: "apixaban"
-    dose: 2.5
-    unit: "miligram"
-    intake_times: [
-      "daily-morning",
-      "daily-evening"
-    ]
-
-- model: endoreg_db.medication_schedule
-  fields:
-    name: "apixaban-5mg-twice_daily"
-    name_de: "Apixaban 5mg, 2x täglich"
-    name_en: "Apixaban 5mg, twice daily"
-    medication: "apixaban"
-    dose: 5
-    unit: "miligram"
-    intake_times: [
-      "daily-morning",
-      "daily-evening"
-    ]
-
-- model: endoreg_db.medication_schedule
-  fields:
-    name: "apixaban-2.5mg-twice_daily"
-    name_de: "Apixaban 2.5mg, 2x täglich"
-    name_en: "Apixaban 2.5mg, twice daily"
-    medication: "apixaban"
-    dose: 2.5
-    unit: "miligram"
-    intake_times: [
-      "daily-morning",
-      "daily-evening"
-    ]
-
-- model: endoreg_db.medication_schedule
-  fields:
-    name: "apixaban-5g-twice_daily_7d"
-    name_de: "Apixaban 5g, 2x täglich, 7 Tage"
-    name_en: "Apixaban 5g, twice daily, 7 days"
-    therapy_duration_d: 7
-    medication: "apixaban"
-    dose: 5
-    unit: "miligram"
-    intake_times: [
-      "daily-morning",
-      "daily-evening"
-    ]
-
-- model: endoreg_db.medication_schedule
-  fields:
-    name: "apixaban-5g-twice_daily_3mo"
-    name_de: "Apixaban 5g, 2x täglich, 3 Monate"
-    name_en: "Apixaban 5g, twice daily, 3 months"
-    therapy_duration_d: 90
-    medication: "apixaban"
-    dose: 5
-    unit: "miligram"
-    intake_times: [
-      "daily-morning",
-      "daily-evening"
-    ]
-
-- model: endoreg_db.medication_schedule
-  fields:
-    name: "apixaban-5g-twice_daily_6mo"
-    name_de: "Apixaban 5g, 2x täglich, 6 Monate"
-    name_en: "Apixaban 5g, twice daily, 6 months"
-    therapy_duration_d: 180
-    medication: "apixaban"
-    dose: 5
-    unit: "miligram"
-    intake_times: [
-      "daily-morning",
-      "daily-evening"
-    ]