endoreg-db 0.5.2__py3-none-any.whl → 0.6.0__py3-none-any.whl

endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml

@@ -1,48 +0,0 @@
-- fields:
-    center: university_hospital_wuerzburg
-    emission_factor: waste_emission_general
-    quantity: 10156.3857142857
-    unit: kilogram
-    waste: general_waste
-    year: 2020
-  model: CenterWaste
-- fields:
-    center: university_hospital_wuerzburg
-    emission_factor: waste_emission_medical
-    quantity: 15699.9014285714
-    unit: kilogram
-    waste: medical_waste
-    year: 2020
-  model: CenterWaste
-- fields:
-    center: university_hospital_wuerzburg
-    emission_factor: waste_emission_general
-    quantity: 10156.3857142857
-    unit: kilogram
-    waste: general_waste
-    year: 2021
-  model: CenterWaste
-- fields:
-    center: university_hospital_wuerzburg
-    emission_factor: waste_emission_medical
-    quantity: 15699.9014285714
-    unit: kilogram
-    waste: medical_waste
-    year: 2021
-  model: CenterWaste
-- fields:
-    center: university_hospital_wuerzburg
-    emission_factor: waste_emission_general
-    quantity: 10156.3857142857
-    unit: kilogram
-    waste: general_waste
-    year: 2022
-  model: CenterWaste
-- fields:
-    center: university_hospital_wuerzburg
-    emission_factor: waste_emission_medical
-    quantity: 15699.9014285714
-    unit: kilogram
-    waste: medical_waste
-    year: 2022
-  model: CenterWaste

endoreg_db/data/disease/cardiovascular.yaml

@@ -1,37 +0,0 @@
-- model: endoreg_db.disease
-  fields:
-    name: "hypertension"
-    name_de: "Arterielle Hypertonie"
-    name_en: "Hypertension"
-
-- model: endoreg_db.disease
-  fields:
-    name: "coronary_artery_disease"
-    name_de: "Koronare Herzkrankheit"
-    name_en: "Coronary Artery Disease"
-
-- model: endoreg_db.disease
-  fields:
-    name: "congestive_heart_failure"
-    name_de: "Chron. Herzinsuffizienz"
-    name_en: "Congestive Heart Failure"
-
-# diabetes mellitus I
-- model: endoreg_db.disease
-  fields:
-    name: "diabetes_mellitus_I"
-    name_de: "Diabetes mellitus Typ I"
-    name_en: "Diabetes Mellitus Type I"
-
-# diabetes mellitus II
-- model: endoreg_db.disease
-  fields:
-    name: "diabetes_mellitus_II"
-    name_de: "Diabetes mellitus Typ II"
-    name_en: "Diabetes Mellitus Type II"
-
-- model: endoreg_db.disease
-  fields:
-    name: "non_valvular_atrial_fibrillation"
-    name_de: "nicht valvuläres Vorhofflimmern"
-    name_en: "non valvular Atrial Fibrillation"

endoreg_db/data/disease/hepatology.yaml

@@ -1,5 +0,0 @@
-- model: endoreg_db.disease
-  fields:
-    name: "liver_cirrhosis"
-    name_de: "Leberzirrhose"
-    name_en: "Liver Cirrhosis"

endoreg_db/data/disease/misc.yaml

@@ -1,6 +0,0 @@
-- model: endoreg_db.disease
-  fields:
-    name: "malignoma_unspecified"
-    name_de: "Malignom, nicht näher bezeichnet"
-    name_en: "Malignoma, unspecified"
-    

endoreg_db/data/disease/renal.yaml

@@ -1,5 +0,0 @@
-- model: endoreg_db.disease
-  fields:
-    name: "chronic_kidney_disease"
-    name_de: "Chronische Nierenerkrankung"
-    name_en: "Chronic Kidney Disease"

endoreg_db/data/disease_classification/chronic_kidney_disease.yaml

@@ -1,6 +0,0 @@
-- model: endoreg_db.disease_classification
-  fields:
-    name: "chronic_kideny_disease_kdigo"
-    name_de: "Chronische Nierenerkrankung (KDIGO)"
-    name_en: "Chronic Kidney Disease (KDIGO)"
-    disease: "chronic_kidney_disease"

endoreg_db/data/disease_classification/coronary_vessel_disease.yaml

@@ -1,6 +0,0 @@
-- model: endoreg_db.disease_classification
-  fields:
-    name: "coronary_artery_disease_base_classification"
-    name_de: "Koronare Gefäßerkrankung (N-Gefäß-Erkrankung)"
-    name_en: "Coronary Vessel Disease (N-Vessel Disease)"
-    disease: "coronary_artery_disease"

endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml

@@ -1,41 +0,0 @@
-- model: endoreg_db.disease_classification_choice
-  fields:
-    name: "ckd_kdigo_1"
-    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 1)"
-    name_en: "Chronic Kidney Disease (KDIGO) (Stage 1)"
-    disease_classification: "chronic_kideny_disease_kdigo"
-
-- model: endoreg_db.disease_classification_choice
-  fields:
-    name: "ckd_kdigo_2"
-    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 2)"
-    name_en: "Chronic Kidney Disease (KDIGO) (Stage 2)"
-    disease_classification: "chronic_kideny_disease_kdigo"
-
-- model: endoreg_db.disease_classification_choice
-  fields:
-    name: "ckd_kdigo_3a"
-    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 3a)"
-    name_en: "Chronic Kidney Disease (KDIGO) (Stage 3a)"
-    disease_classification: "chronic_kideny_disease_kdigo"
-
-- model: endoreg_db.disease_classification_choice
-  fields:
-    name: "ckd_kdigo_3b"
-    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 3b)"
-    name_en: "Chronic Kidney Disease (KDIGO) (Stage 3b)"
-    disease_classification: "chronic_kideny_disease_kdigo"
-
-- model: endoreg_db.disease_classification_choice
-  fields:
-    name: "ckd_kdigo_4"
-    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 4)"
-    name_en: "Chronic Kidney Disease (KDIGO) (Stage 4)"
-    disease_classification: "chronic_kideny_disease_kdigo"
-
-- model: endoreg_db.disease_classification_choice
-  fields:
-    name: "ckd_kdigo_5"
-    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 5)"
-    name_en: "Chronic Kidney Disease (KDIGO) (Stage 5)"
-    disease_classification: "chronic_kideny_disease_kdigo"

endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml

@@ -1,20 +0,0 @@
-- model: endoreg_db.disease_classification_choice
-  fields:
-    name: "khk_1_ge"
-    name_de: "Koronare Gefäßerkrankung (1-Gefäß-Erkrankung)"
-    name_en: "Coronary Vessel Disease (1-Vessel Disease)"
-    disease_classification: "coronary_artery_disease_base_classification"
-
-- model: endoreg_db.disease_classification_choice
-  fields:
-    name: "khk_2_ge"
-    name_de: "Koronare Gefäßerkrankung (2-Gefäß-Erkrankung)"
-    name_en: "Coronary Vessel Disease (2-Vessel Disease)"
-    disease_classification: "coronary_artery_disease_base_classification"
-
-- model: endoreg_db.disease_classification_choice
-  fields:
-    name: "khk_3_ge"
-    name_de: "Koronare Gefäßerkrankung (3-Gefäß-Erkrankung)"
-    name_en: "Coronary Vessel Disease (3-Vessel Disease)"
-    disease_classification: "coronary_artery_disease_base_classification"

endoreg_db/data/distribution/date/patient.yaml

@@ -1,7 +0,0 @@
-- model: endoreg_db.date_value_distribution
-  fields:
-    name: "age-screening_colo_population"
-    distribution_type: "uniform"
-    mode: "timedelta"
-    timedelta_days_min: 18250
-    timedelta_days_max: 32485

endoreg_db/data/distribution/single_categorical/patient.yaml

@@ -1,7 +0,0 @@
-- model: endoreg_db.single_categorical_value_distribution
-  fields:
-    name: "gender_random"
-    categories: {
-      "male": 0.5,
-      "female": 0.5
-    }

endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml

@@ -1,132 +0,0 @@
-- fields:
-    name: material_emission_cardboard
-    unit: kilogram
-    value: 0.828
-  model: EmissionFactor
-- fields:
-    name: material_emission_foil
-    unit: kilogram
-    value: 2.574
-  model: EmissionFactor
-- fields:
-    name: material_emission_gold
-    unit: kilogram
-    value: 4.018
-  model: EmissionFactor
-- fields:
-    name: material_emission_metal
-    unit: kilogram
-    value: 4.018
-  model: EmissionFactor
-- fields:
-    name: material_emission_nickel
-    unit: kilogram
-    value: 4.018
-  model: EmissionFactor
-- fields:
-    name: material_emission_paper
-    unit: kilogram
-    value: 0.919
-  model: EmissionFactor
-- fields:
-    name: material_emission_paper_coated
-    unit: kilogram
-    value: 2.0175
-  model: EmissionFactor
-- fields:
-    name: material_emission_plastic
-    unit: kilogram
-    value: 3.116
-  model: EmissionFactor
-- fields:
-    name: material_emission_plastic_coated
-    unit: kilogram
-    value: 3.116
-  model: EmissionFactor
-- fields:
-    name: material_emission_silicone
-    unit: kilogram
-    value: 2.0
-  model: EmissionFactor
-- fields:
-    name: material_emission_steel
-    unit: kilogram
-    value: 4.018
-  model: EmissionFactor
-- fields:
-    name: material_emission_tantal
-    unit: kilogram
-    value: 4.018
-  model: EmissionFactor
-- fields:
-    name: material_emission_textile
-    unit: kilogram
-    value: 2.0
-  model: EmissionFactor
-- fields:
-    name: material_emission_titan
-    unit: kilogram
-    value: 4.018
-  model: EmissionFactor
-- fields:
-    name: use_resource_emission_ukw_gas
-    unit: liter
-    value: 2.01574
-  model: EmissionFactor
-- fields:
-    name: use_resource_emission_ukw_oil
-    unit: cubic_meter
-    value: 3.17522
-  model: EmissionFactor
-- fields:
-    name: use_resource_emission_ukw_electricity_extern
-    unit: kilowatt-hours
-    value: 0.0
-  model: EmissionFactor
-- fields:
-    name: use_resource_emission_ukw_electricity_selfmade
-    unit: kilowatt-hours
-    value: 0.0
-  model: EmissionFactor
-- fields:
-    name: transport_resource_emission_ukw_gas
-    unit: liter
-    value: 0.3434
-  model: EmissionFactor
-- fields:
-    name: transport_resource_emission_ukw_oil
-    unit: cubic_meter
-    value: 0.69723
-  model: EmissionFactor
-- fields:
-    name: transport_resource_emission_ukw_electricity_extern
-    unit: kilowatt-hours
-    value: 0.05048
-  model: EmissionFactor
-- fields:
-    name: transport_resource_emission_ukw_electricity_selfmade
-    unit: kilowatt-hours
-    value: 0.0
-  model: EmissionFactor
-
-- fields:
-    name: transport_product_emission_generic_europe
-    unit: "kilogram"
-    value: 0.13213
-  model: EmissionFactor
-- fields:
-    name: transport_product_emission_generic_overseas
-    unit: "kilogram"
-    value: 1.308373
-  model: EmissionFactor
-- fields:
-    name: waste_emission_medical
-    unit: "kilogram"
-    value: 0.0212801937984496
-  model: EmissionFactor
-
-- fields:
-    name: waste_emission_general
-    unit: "kilogram"
-    value: 0.0212801937984496
-  model: EmissionFactor

endoreg_db/data/endoscope_type/data.yaml

@@ -1,11 +0,0 @@
-- model: endoreg_db.endoscope_type
-  fields:
-    name: "gastroscope"
-    name_de: "Gastroskop"
-    name_en: "Gastroscope"
-
-- model: endoreg_db.endoscope_type
-  fields:
-    name: "colonoscope"
-    name_de: "Koloskop"
-    name_en: "Colonoscope"

endoreg_db/data/endoscopy_processor/data.yaml

@@ -1,47 +0,0 @@
-- model: endoreg_db.endoscopy_processor
-  fields:
-    name: "olympus_cv_1500"
-    image_width: 1920
-    image_height: 1080
-
-    endoscope_image_x: 550
-    endoscope_image_y: 0
-    endoscope_image_width: 1350
-    endoscope_image_height: 1080
-
-    examination_date_x: 0
-    examination_date_y: 0
-    examination_date_width: 390
-    examination_date_height: 40
-
-    examination_time_x: 240
-    examination_time_y: 7
-    examination_time_width: 115
-    examination_time_height: 35
-
-    patient_first_name_x: 80
-    patient_first_name_y: 110
-    patient_first_name_width: 440
-    patient_first_name_height: 33
-
-    patient_last_name_x: 70
-    patient_last_name_y: 83
-    patient_last_name_width: 450
-    patient_last_name_height: 27
-
-    patient_dob_x: 70
-    patient_dob_y: 180
-    patient_dob_width: 160
-    patient_dob_height: 50
-
-    endoscope_type_x: 70
-    endoscope_type_y: 630
-    endoscope_type_width: 280
-    endoscope_type_height: 35
-
-    endoscope_sn_x: 70
-    endoscope_sn_y: 670
-    endoscope_sn_width: 280
-    endoscope_sn_height: 35
-
-    

endoreg_db/data/event/cardiology.yaml

@@ -1,28 +0,0 @@
-- model: endoreg_db.event
-  fields:
-    name: "coro_des_implantation"
-    name_de: "Koronarstent-Implantation (DES)"
-    name_en: "Coronary Stent Implantation (DES)"
-- model: endoreg_db.event
-  fields:
-    name: "coro_bms_implantation"
-    name_de: "Koronarstent-Implantation (BMS)"
-    name_en: "Coronary Stent Implantation (BMS)"
-- model: endoreg_db.event
-  fields:
-    name: "complication_coro_stent_thrombosis"
-    name_de: "Komplikation: Koronar Stent Thrombose"
-    name_en: "Complication: Coronary Stent Thrombosis"
-
-- model: endoreg_db.event
-  fields:
-    name: "pulmonary_embolism"
-    name_de: "Lungenembolie"
-    name_en: "Pulmonary Embolism"
-
-- model: endoreg_db.event
-  fields:
-    name: "deep_vein_thrombosis"
-    name_de: "Tiefe Beinvenenthrombose"
-    name_en: "Deep Vein Thrombosis"
-    

endoreg_db/data/event/neurology.yaml

@@ -1,14 +0,0 @@
-
-- model: endoreg_db.event
-  fields:
-    name: "stroke"
-    name_de: "Schlaganfall"
-    name_en: "Stroke"
-
-- model: endoreg_db.event
-  fields:
-    name: "transient_ischemic_attack"
-    name_de: "Transitorische ischämische Attacke"
-    name_en: "Transient Ischemic Attack"
-    
-    

endoreg_db/data/event/surgery.yaml

@@ -1,13 +0,0 @@
-- model: endoreg_db.event
-  fields:
-    name: "hip_replacement_surgery" #TODO : could match disease / indication / ...?
-    name_de: "Hüft-TEP Operation"
-    name_en: "Hip replacement surgery"
-    description: "Hip replacement surgery"
-
-- model: endoreg_db.event
-  fields:
-    name: "knee_replacement_surgery"
-    name_de: "Knie-TEP Operation"
-    name_en: "Knee replacement surgery"
-    description: "Knee replacement surgery"

endoreg_db/data/event/thrombembolism.yaml

@@ -1,20 +0,0 @@
-- model: endoreg_db.event
-  fields:
-    name: "deep_vein_thrombosis"
-    name_de: "Tiefe Beinvenenthrombose"
-    name_en: "Deep Vein Thrombosis"
-    description: "Deep Vein Thrombosis"
-
-- model: endoreg_db.event
-  fields:
-    name: "pulmonary_embolism"
-    name_de: "Lungenembolie"
-    name_en: "Pulmonary Embolism"
-    description: "Pulmonary Embolism"
-
-- model: endoreg_db.event
-  fields:
-    name: "recurrent_thrombembolism"
-    name_de: "Rezidivierende Thrombembolien"
-    name_en: "Recurrent Thrombembolism"
-    description: "Recurrent Thrombembolism"

endoreg_db/data/examination/examinations/data.yaml

@@ -1,66 +0,0 @@
-- model: report.Examination
-  fields:
-    name: "colonoscopy"
-    name_de: "Koloskopie"
-    name_en: "Colonoscopy"
-    examination_types: [
-      "endoscopy"
-    ]
-
-- model: report.Examination
-  fields:
-    name: "gastroscopy"
-    name_de: "Gastroskopie"
-    name_en: "Gastroscopy"
-    examination_types: [
-      "endoscopy"
-    ]
-
-# endosonography_upper_gi
-- model: report.Examination
-  fields:
-    name: "endosonography_upper_gi"
-    name_de: "Endosonographie oberer GI-Trakt"
-    name_en: "Endosonography Upper GI Tract"
-    examination_types: [
-      "endoscopy"
-    ]
-
-- model: report.Examination
-  fields:
-    name: "endosonography_lower_gi"
-    name_de: "Endosonographie unterer GI-Trakt"
-    name_en: "Endosonography Lower GI Tract"
-    examination_types: [
-      "endoscopy"
-    ]
-
-# ERCP
-- model: report.Examination
-  fields:
-    name: "ercp"
-    name_de: "ERCP"
-    name_en: "ERCP"
-    examination_types: [
-      "endoscopy"
-    ]
-
-# small bowel endoscopy
-- model: report.Examination
-  fields:
-    name: "small_bowel_endoscopy"
-    name_de: "Dünndarmendoskopie"
-    name_en: "Small Bowel Endoscopy"
-    examination_types: [
-      "endoscopy"
-    ]
-
-# capsule endoscopy
-- model: report.Examination
-  fields:
-    name: "capsule_endoscopy"
-    name_de: "Kapselendoskopie"
-    name_en: "Capsule Endoscopy"
-    examination_types: [
-      "endoscopy"
-    ]

endoreg_db/data/examination/time/data.yaml

@@ -1,48 +0,0 @@
-- model: report.ExaminationTime
-  fields:
-    name: "colonoscopy-total-time"
-    name_de: "Koloskopie Zeiten"
-    name_en: "Colonoscopy Times"
-    time_types: [
-      "colonoscopy-time"
-    ]
-  
-# withdrawal-time
-- model: report.ExaminationTime
-  fields:
-    name: "withdrawal-time"
-    name_de: "Withdrawal Time"
-    name_en: "Withdrawal Time"
-    time_types: [
-      "colonoscopy-time"
-    ]
-
-# cecum-time
-- model: report.ExaminationTime
-  fields:
-    name: "cecum-time"
-    name_de: "Zökum Zeit"
-    name_en: "Cecum Time"
-    time_types: [
-      "colonoscopy-time"
-    ]
-
-# intubation-time
-- model: report.ExaminationTime
-  fields:
-    name: "intubation-time"
-    name_de: "Intubationszeit"
-    name_en: "Intubation Time"
-    time_types: [
-      "colonoscopy-time"
-    ]
-
-# colonoscopy-intervention-time
-- model: report.ExaminationTimeType
-  fields:
-    name: "colonoscopy-intervention-time"
-    name_de: "Interventionszeit"
-    name_en: "Intervention Time"
-    time_types: [
-      "colonoscopy-time"
-    ]

endoreg_db/data/examination/time-type/data.yaml

@@ -1,8 +0,0 @@
-- model:
-  fields:
-    name: "colonoscopy-time"
-    name_de: "Koloskopie-Zeit"
-    name_en: "Colonoscopy Time"
-    examinations: [
-      "colonoscopy"
-    ]

endoreg_db/data/examination/type/data.yaml

@@ -1,5 +0,0 @@
-- model: report.ExaminationType
-  fields:
-    name: "endoscopy"
-    name_de: "Endoskopie"
-    name_en: "Endoscopy"

endoreg_db/data/gender/data.yaml

@@ -1,18 +0,0 @@
-- model: endoreg_db.gender
-  fields:
-    name: "male"
-    name_de: "männlich"
-    name_en: "male"
-    abbreviation: "m"
-- model: endoreg_db.gender
-  fields:
-    name: "female"
-    name_de: "weiblich"
-    name_en: "female"
-    abbreviation: "f"
-- model: endoreg_db.gender
-  fields:
-    name: "other"
-    name_de: "andere"
-    name_en: "other"
-    abbreviation: "x"

endoreg_db/data/information_source/data.yaml

@@ -1,30 +0,0 @@
-- model: endoreg_db.InformationSource
-  fields:
-    name: treating_physician
-- model: endoreg_db.InformationSource
-  fields:
-    name: treating_physician_anamnestic
-- model: endoreg_db.InformationSource
-  fields:
-    name: physicians_note_anamnestic
-- model: endoreg_db.InformationSource
-  fields:
-    name: patient_anamnestic
-- model: endoreg_db.InformationSource
-  fields:
-    name: physical_measurement
-- model: endoreg_db.InformationSource
-  fields:
-    name: family_anamnestic
-- model: endoreg_db.InformationSource
-  fields:
-    name: physical_examination
-- model: endoreg_db.InformationSource
-  fields:
-    name: unknown
-- model: endoreg_db.InformationSource
-  fields:
-    name: prediction
-- model: endoreg_db.InformationSource
-  fields:
-    name: annotation

endoreg_db/data/information_source/medication.yaml

@@ -1,6 +0,0 @@
-- model: endoreg_db.InformationSource
-  fields:
-    name: "fachinformation-apixaban-eliquis_2.5mg-bristol_meyer_squibbs"
-    name_de: "Fachinformation Apixaban (Eliquis) 2.5mg, Bristol Meyer Squibbs"
-    name_en: "Apixaban (Eliquis) 2.5mg, Bristol Meyer Squibbs"
-    date: "2024-04-28"