desdeo 1.2__py3-none-any.whl → 2.0.0__py3-none-any.whl

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Files changed (122) hide show
  1. desdeo/__init__.py +8 -8
  2. desdeo/api/README.md +73 -0
  3. desdeo/api/__init__.py +15 -0
  4. desdeo/api/app.py +40 -0
  5. desdeo/api/config.py +69 -0
  6. desdeo/api/config.toml +53 -0
  7. desdeo/api/db.py +25 -0
  8. desdeo/api/db_init.py +79 -0
  9. desdeo/api/db_models.py +164 -0
  10. desdeo/api/malaga_db_init.py +27 -0
  11. desdeo/api/models/__init__.py +66 -0
  12. desdeo/api/models/archive.py +34 -0
  13. desdeo/api/models/preference.py +90 -0
  14. desdeo/api/models/problem.py +507 -0
  15. desdeo/api/models/reference_point_method.py +18 -0
  16. desdeo/api/models/session.py +46 -0
  17. desdeo/api/models/state.py +96 -0
  18. desdeo/api/models/user.py +51 -0
  19. desdeo/api/routers/_NAUTILUS.py +245 -0
  20. desdeo/api/routers/_NAUTILUS_navigator.py +233 -0
  21. desdeo/api/routers/_NIMBUS.py +762 -0
  22. desdeo/api/routers/__init__.py +5 -0
  23. desdeo/api/routers/problem.py +110 -0
  24. desdeo/api/routers/reference_point_method.py +117 -0
  25. desdeo/api/routers/session.py +76 -0
  26. desdeo/api/routers/test.py +16 -0
  27. desdeo/api/routers/user_authentication.py +366 -0
  28. desdeo/api/schema.py +94 -0
  29. desdeo/api/tests/__init__.py +0 -0
  30. desdeo/api/tests/conftest.py +59 -0
  31. desdeo/api/tests/test_models.py +701 -0
  32. desdeo/api/tests/test_routes.py +216 -0
  33. desdeo/api/utils/database.py +274 -0
  34. desdeo/api/utils/logger.py +29 -0
  35. desdeo/core.py +27 -0
  36. desdeo/emo/__init__.py +29 -0
  37. desdeo/emo/hooks/archivers.py +172 -0
  38. desdeo/emo/methods/EAs.py +418 -0
  39. desdeo/emo/methods/__init__.py +0 -0
  40. desdeo/emo/methods/bases.py +59 -0
  41. desdeo/emo/operators/__init__.py +1 -0
  42. desdeo/emo/operators/crossover.py +780 -0
  43. desdeo/emo/operators/evaluator.py +118 -0
  44. desdeo/emo/operators/generator.py +356 -0
  45. desdeo/emo/operators/mutation.py +1053 -0
  46. desdeo/emo/operators/selection.py +1036 -0
  47. desdeo/emo/operators/termination.py +178 -0
  48. desdeo/explanations/__init__.py +6 -0
  49. desdeo/explanations/explainer.py +100 -0
  50. desdeo/explanations/utils.py +90 -0
  51. desdeo/mcdm/__init__.py +19 -0
  52. desdeo/mcdm/nautili.py +345 -0
  53. desdeo/mcdm/nautilus.py +477 -0
  54. desdeo/mcdm/nautilus_navigator.py +655 -0
  55. desdeo/mcdm/nimbus.py +417 -0
  56. desdeo/mcdm/pareto_navigator.py +269 -0
  57. desdeo/mcdm/reference_point_method.py +116 -0
  58. desdeo/problem/__init__.py +79 -0
  59. desdeo/problem/evaluator.py +561 -0
  60. desdeo/problem/gurobipy_evaluator.py +562 -0
  61. desdeo/problem/infix_parser.py +341 -0
  62. desdeo/problem/json_parser.py +944 -0
  63. desdeo/problem/pyomo_evaluator.py +468 -0
  64. desdeo/problem/schema.py +1808 -0
  65. desdeo/problem/simulator_evaluator.py +298 -0
  66. desdeo/problem/sympy_evaluator.py +244 -0
  67. desdeo/problem/testproblems/__init__.py +73 -0
  68. desdeo/problem/testproblems/binh_and_korn_problem.py +88 -0
  69. desdeo/problem/testproblems/dtlz2_problem.py +102 -0
  70. desdeo/problem/testproblems/forest_problem.py +275 -0
  71. desdeo/problem/testproblems/knapsack_problem.py +163 -0
  72. desdeo/problem/testproblems/mcwb_problem.py +831 -0
  73. desdeo/problem/testproblems/mixed_variable_dimenrions_problem.py +83 -0
  74. desdeo/problem/testproblems/momip_problem.py +172 -0
  75. desdeo/problem/testproblems/nimbus_problem.py +143 -0
  76. desdeo/problem/testproblems/pareto_navigator_problem.py +89 -0
  77. desdeo/problem/testproblems/re_problem.py +492 -0
  78. desdeo/problem/testproblems/river_pollution_problem.py +434 -0
  79. desdeo/problem/testproblems/rocket_injector_design_problem.py +140 -0
  80. desdeo/problem/testproblems/simple_problem.py +351 -0
  81. desdeo/problem/testproblems/simulator_problem.py +92 -0
  82. desdeo/problem/testproblems/spanish_sustainability_problem.py +945 -0
  83. desdeo/problem/testproblems/zdt_problem.py +271 -0
  84. desdeo/problem/utils.py +245 -0
  85. desdeo/tools/GenerateReferencePoints.py +181 -0
  86. desdeo/tools/__init__.py +102 -0
  87. desdeo/tools/generics.py +145 -0
  88. desdeo/tools/gurobipy_solver_interfaces.py +258 -0
  89. desdeo/tools/indicators_binary.py +11 -0
  90. desdeo/tools/indicators_unary.py +375 -0
  91. desdeo/tools/interaction_schema.py +38 -0
  92. desdeo/tools/intersection.py +54 -0
  93. desdeo/tools/iterative_pareto_representer.py +99 -0
  94. desdeo/tools/message.py +234 -0
  95. desdeo/tools/ng_solver_interfaces.py +199 -0
  96. desdeo/tools/non_dominated_sorting.py +133 -0
  97. desdeo/tools/patterns.py +281 -0
  98. desdeo/tools/proximal_solver.py +99 -0
  99. desdeo/tools/pyomo_solver_interfaces.py +464 -0
  100. desdeo/tools/reference_vectors.py +462 -0
  101. desdeo/tools/scalarization.py +3138 -0
  102. desdeo/tools/scipy_solver_interfaces.py +454 -0
  103. desdeo/tools/score_bands.py +464 -0
  104. desdeo/tools/utils.py +320 -0
  105. desdeo/utopia_stuff/__init__.py +0 -0
  106. desdeo/utopia_stuff/data/1.json +15 -0
  107. desdeo/utopia_stuff/data/2.json +13 -0
  108. desdeo/utopia_stuff/data/3.json +15 -0
  109. desdeo/utopia_stuff/data/4.json +17 -0
  110. desdeo/utopia_stuff/data/5.json +15 -0
  111. desdeo/utopia_stuff/from_json.py +40 -0
  112. desdeo/utopia_stuff/reinit_user.py +38 -0
  113. desdeo/utopia_stuff/utopia_db_init.py +212 -0
  114. desdeo/utopia_stuff/utopia_problem.py +403 -0
  115. desdeo/utopia_stuff/utopia_problem_old.py +415 -0
  116. desdeo/utopia_stuff/utopia_reference_solutions.py +79 -0
  117. desdeo-2.0.0.dist-info/LICENSE +21 -0
  118. desdeo-2.0.0.dist-info/METADATA +168 -0
  119. desdeo-2.0.0.dist-info/RECORD +120 -0
  120. {desdeo-1.2.dist-info → desdeo-2.0.0.dist-info}/WHEEL +1 -1
  121. desdeo-1.2.dist-info/METADATA +0 -16
  122. desdeo-1.2.dist-info/RECORD +0 -4
desdeo/tools/utils.py ADDED
@@ -0,0 +1,320 @@
1
+ """General utilities related to solvers."""
2
+
3
+ import shutil
4
+
5
+ import numpy as np
6
+
7
+ from desdeo.problem import (
8
+ ObjectiveTypeEnum,
9
+ Problem,
10
+ TensorVariable,
11
+ VariableDimensionEnum,
12
+ VariableDomainTypeEnum,
13
+ numpy_array_to_objective_dict,
14
+ variable_dimension_enumerate,
15
+ )
16
+ from desdeo.tools.generics import BaseSolver
17
+ from desdeo.tools.gurobipy_solver_interfaces import GurobipySolver
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+ from desdeo.tools.ng_solver_interfaces import NevergradGenericSolver
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+ from desdeo.tools.proximal_solver import ProximalSolver
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+ from desdeo.tools.pyomo_solver_interfaces import (
21
+ PyomoBonminSolver,
22
+ PyomoCBCSolver,
23
+ PyomoGurobiSolver,
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+ PyomoIpoptSolver,
25
+ )
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+ from desdeo.tools.scipy_solver_interfaces import ScipyDeSolver, ScipyMinimizeSolver
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+
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+ available_solvers = {
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+ "scipy_minimize": ScipyMinimizeSolver,
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+ "scipy_de": ScipyDeSolver,
31
+ "proximal": ProximalSolver,
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+ "nevergrad": NevergradGenericSolver,
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+ "pyomo_bonmin": PyomoBonminSolver,
34
+ "pyomo_cbc": PyomoCBCSolver,
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+ "pyomo_ipopt": PyomoIpoptSolver,
36
+ "pyomo_gurobi": PyomoGurobiSolver,
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+ "gurobipy": GurobipySolver,
38
+ }
39
+
40
+
41
+ def find_compatible_solvers(problem: Problem) -> list[BaseSolver]:
42
+ """Find solvers that are compatible with the problem that is being solved.
43
+
44
+ Args:
45
+ problem (Problem): The problem being solved.
46
+
47
+ Returns:
48
+ list[BaseSolver]: A list of solvers that are compatible with the problem.
49
+ """
50
+ solvers = []
51
+
52
+ # check for variable dimensions
53
+ # This could be also done by just checking if all the variables are Variables instead of TensorVariables
54
+ # as solvers at the moment do not care about the difference between 1D tensors and higher dimensions.
55
+ # This is because the solvers that utilize the polars evaluator (the only evaluator that works with
56
+ # scalars and 1D tensors and not higher dimensions) only support scalar valued variables at the moment.
57
+ var_dim = variable_dimension_enumerate(problem)
58
+
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+ # check if problem has only data-based objectives
60
+ all_data_based = all(objective.objective_type == ObjectiveTypeEnum.data_based for objective in problem.objectives)
61
+
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+ # check if problem has a discrete definition
63
+ has_discrete = problem.discrete_representation is not None
64
+
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+ # check if problem is data-based
66
+ if all_data_based and has_discrete and var_dim == VariableDimensionEnum.scalar:
67
+ # problem has only data-based objectives and a discrete definition is available
68
+ # return ProximalSolver as it is the only solver for data-based problems at the moment
69
+ return [available_solvers["proximal"]]
70
+
71
+ # check if the problem is differentiable and if it is mixed integer
72
+ if (
73
+ problem.is_twice_differentiable
74
+ and shutil.which("bonmin")
75
+ and problem.variable_domain
76
+ in [
77
+ VariableDomainTypeEnum.integer,
78
+ VariableDomainTypeEnum.mixed,
79
+ ]
80
+ ):
81
+ solvers.append(available_solvers["pyomo_bonmin"]) # bonmin has to be installed
82
+
83
+ # check if the problem is differentiable and continuous
84
+ if (
85
+ problem.is_twice_differentiable
86
+ and shutil.which("ipopt")
87
+ and problem.variable_domain in [VariableDomainTypeEnum.continuous]
88
+ ):
89
+ solvers.append(available_solvers["pyomo_ipopt"]) # ipopt has to be installed
90
+
91
+ # check if the problem is linear
92
+ if problem.is_linear:
93
+ solvers.append(available_solvers["gurobipy"])
94
+ if problem.is_linear and shutil.which("gurobi"):
95
+ solvers.append(available_solvers["pyomo_gurobi"]) # gurobi has to be installed
96
+ if problem.is_linear and shutil.which("cbc"):
97
+ solvers.append(available_solvers["pyomo_cbc"])
98
+
99
+ # check if problem's variables are all scalars
100
+ if var_dim == VariableDimensionEnum.scalar:
101
+ # nevergrad and scipy solvers work with all(?) problems with only scalar valued variables
102
+ solvers.append(available_solvers["nevergrad"])
103
+ solvers.append(available_solvers["scipy_minimize"])
104
+ solvers.append(available_solvers["scipy_de"])
105
+ return solvers
106
+
107
+
108
+ def guess_best_solver(problem: Problem) -> BaseSolver: # noqa: PLR0911
109
+ """Given a problem, tries to guess the best solver to handle it.
110
+
111
+ Args:
112
+ problem (Problem): the problem being solved.
113
+
114
+ Note:
115
+ Needs to be extended as new solvers are implemented.
116
+
117
+ Returns:
118
+ BaseSolver: a solver class that uses BaseSolver as a base class
119
+ """
120
+ # needs to be extended as new solver are implemented
121
+
122
+ # check if problem has only data-based objectives
123
+ all_data_based = all(objective.objective_type == ObjectiveTypeEnum.data_based for objective in problem.objectives)
124
+
125
+ # check if problem has a discrete definition
126
+ has_discrete = problem.discrete_representation is not None
127
+
128
+ if TensorVariable in problem.variables:
129
+ if problem.is_linear and shutil.which("cbc"):
130
+ return available_solvers["pyomo_cbc"]
131
+
132
+ if problem.is_linear:
133
+ return available_solvers["gurobipy"]
134
+
135
+ # check if the problem is differentiable and if it is mixed integer
136
+ if (
137
+ problem.is_twice_differentiable
138
+ and shutil.which("bonmin")
139
+ and problem.variable_domain
140
+ in [
141
+ VariableDomainTypeEnum.integer,
142
+ VariableDomainTypeEnum.mixed,
143
+ ]
144
+ ):
145
+ return available_solvers["pyomo_bonmin"]
146
+
147
+ # check if the problem is differentiable and continuous
148
+ if (
149
+ problem.is_twice_differentiable
150
+ and shutil.which("ipopt")
151
+ and problem.variable_domain in [VariableDomainTypeEnum.continuous]
152
+ ):
153
+ return available_solvers["pyomo_ipopt"]
154
+
155
+ if all_data_based and has_discrete:
156
+ # problem has only data-based objectives and a discrete definition is available
157
+ # guess proximal solver is best
158
+ return available_solvers["proximal"]
159
+
160
+ # check if the problem is linear
161
+ if problem.is_linear:
162
+ return available_solvers["gurobipy"]
163
+
164
+ # check if the problem is differentiable and if it is mixed integer
165
+ if problem.is_twice_differentiable and shutil.which("bonmin") and problem.variable_domain in [
166
+ VariableDomainTypeEnum.integer,
167
+ VariableDomainTypeEnum.mixed,
168
+ ]:
169
+ return available_solvers["pyomo_bonmin"]
170
+
171
+ # check if the problem is differentiable and continuous
172
+ if (
173
+ problem.is_twice_differentiable
174
+ and shutil.which("ipopt")
175
+ and problem.variable_domain in [VariableDomainTypeEnum.continuous]
176
+ ):
177
+ return available_solvers["pyomo_ipopt"]
178
+
179
+ # else, guess nevergrad heuristics to be the best
180
+ return available_solvers["nevergrad"]
181
+
182
+ # thigs to check: variable types, does the problem have constraint, constraint types, etc...
183
+
184
+
185
+ def get_corrected_ideal_and_nadir(problem: Problem) -> tuple[dict[str, float | None], dict[str, float | None] | None]:
186
+ """Compute the corrected ideal and nadir points depending if an objective function is to be maximized or not.
187
+
188
+ I.e., the ideal and nadir point element for objectives to be maximized will be multiplied by -1.
189
+
190
+ Args:
191
+ problem (Problem): the problem with the ideal and nadir points.
192
+
193
+ Raises:
194
+ ValueError: some of the ideal or nadir point components have not been defined
195
+ for some of the objectives.
196
+
197
+ Returns:
198
+ tuple[list[float], list[float]]: a list with the corrected ideal point
199
+ and a list with the corrected nadir point. Will return None for missing
200
+ elements.
201
+ """
202
+ # check that ideal and nadir points are actually defined
203
+ if any(obj.ideal is None for obj in problem.objectives) or any(obj.nadir is None for obj in problem.objectives):
204
+ msg = "Some of the objectives have not a defined ideal or nadir value."
205
+ raise ValueError(msg)
206
+
207
+ ideal_point = {
208
+ objective.symbol: objective.ideal if not objective.maximize else -objective.ideal
209
+ for objective in problem.objectives
210
+ }
211
+ nadir_point = {
212
+ objective.symbol: objective.nadir if not objective.maximize else -objective.nadir
213
+ for objective in problem.objectives
214
+ }
215
+
216
+ return ideal_point, nadir_point
217
+
218
+ def get_corrected_ideal(problem: Problem) -> dict[str, float | None]:
219
+ """Compute the corrected ideal point depending if an objective function is to be maximized or not.
220
+
221
+ I.e., the ideal point element for objectives to be maximized will be multiplied by -1.
222
+
223
+ Args:
224
+ problem (Problem): the problem with the ideal point.
225
+
226
+ Raises:
227
+ ValueError: some of the ideal point components have not been defined
228
+ for some of the objectives.
229
+
230
+ Returns:
231
+ list[float]: a list with the corrected ideal point. Will return None for missing elements.
232
+ """
233
+ # check that ideal points are actually defined
234
+ if any(obj.ideal is None for obj in problem.objectives):
235
+ msg = "Some of the objectives have not a defined ideal value."
236
+ raise ValueError(msg)
237
+
238
+ ideal_point = {
239
+ objective.symbol: objective.ideal if not objective.maximize else -objective.ideal
240
+ for objective in problem.objectives
241
+ }
242
+
243
+ return ideal_point
244
+
245
+ def get_corrected_nadir(problem: Problem) -> dict[str, float | None]:
246
+ """Compute the corrected nadir point depending if an objective function is to be maximized or not.
247
+
248
+ I.e., the nadir point element for objectives to be maximized will be multiplied by -1.
249
+
250
+ Args:
251
+ problem (Problem): the problem with the nadir points.
252
+
253
+ Raises:
254
+ ValueError: some of the nadir point components have not been defined
255
+ for some of the objectives.
256
+
257
+ Returns:
258
+ list[float]: a list with the corrected nadir point. Will return None for missing elements.
259
+ """
260
+ # check that nadir points are actually defined
261
+ if any(obj.nadir is None for obj in problem.objectives):
262
+ msg = "Some of the objectives have not a defined nadir value."
263
+ raise ValueError(msg)
264
+
265
+ nadir_point = {
266
+ objective.symbol: objective.nadir if not objective.maximize else -objective.nadir
267
+ for objective in problem.objectives
268
+ }
269
+
270
+ return nadir_point
271
+
272
+ def get_corrected_reference_point(problem: Problem, reference_point: dict[str, float]) -> dict[str, float]:
273
+ """Correct the components of a reference point.
274
+
275
+ Correct the components of a reference point by multiplying the components
276
+ related to maximized objective functions by -1.
277
+
278
+ Args:
279
+ problem (Problem): the problem the reference point is related to.
280
+ reference_point (dict[str, float]): the reference point to be corrected.
281
+
282
+ Returns:
283
+ dict[str, float]: the corrected reference point.
284
+ """
285
+ return {
286
+ obj.symbol: reference_point[obj.symbol] * -1 if obj.maximize else reference_point[obj.symbol]
287
+ for obj in problem.objectives
288
+ }
289
+
290
+
291
+ def payoff_table_method(problem: Problem, solver: BaseSolver = None) -> tuple[dict[str, float], dict[str, float]]:
292
+ """Solves a representation for the ideal and nadir points for a multiobjective optimization problem.
293
+
294
+ Args:
295
+ problem (Problem): The problem for which the ideal and nadir are solved.
296
+ solver (BaseSolver): The solver to be used in solving the points. Defaults to None.
297
+
298
+ Returns:
299
+ tuple[dict[str, float], dict[str, float]]: The estimated ideal and nadir points.
300
+ """
301
+ solver = solver if solver is not None else guess_best_solver(problem)
302
+ solver = solver(problem)
303
+
304
+ k = len(problem.objectives)
305
+ po_table = np.zeros((k, k))
306
+
307
+ for i in range(k):
308
+ res = solver.solve(f"{problem.objectives[i].symbol}_min")
309
+ for j in range(k):
310
+ po_table[i][j] = res.optimal_objectives[problem.objectives[j].symbol]
311
+
312
+ ideal = np.diag(po_table)
313
+ nadir = []
314
+
315
+ for i in range(k):
316
+ if problem.objectives[i].maximize:
317
+ nadir.append(np.min(po_table.T[i]))
318
+ else:
319
+ nadir.append(np.max(po_table.T[i]))
320
+ return numpy_array_to_objective_dict(problem, ideal), numpy_array_to_objective_dict(problem, nadir)
File without changes
@@ -0,0 +1,15 @@
1
+ {"type":"FeatureCollection", "features": [
2
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