consenrich 0.7.5b1__cp314-cp314-macosx_10_15_x86_64.whl

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Files changed (37) hide show
  1. consenrich/__init__.py +11 -0
  2. consenrich/cconsenrich.c +48693 -0
  3. consenrich/cconsenrich.cpython-314-darwin.so +0 -0
  4. consenrich/cconsenrich.pyx +861 -0
  5. consenrich/consenrich.py +1384 -0
  6. consenrich/constants.py +172 -0
  7. consenrich/core.py +1438 -0
  8. consenrich/data/ce10.sizes +6 -0
  9. consenrich/data/ce10_blacklist.bed +100 -0
  10. consenrich/data/ce10_sparse.bed +11828 -0
  11. consenrich/data/ce11.sizes +6 -0
  12. consenrich/data/ce11_blacklist.bed +97 -0
  13. consenrich/data/ce11_sparse.bed +11828 -0
  14. consenrich/data/dm6.sizes +7 -0
  15. consenrich/data/dm6_blacklist.bed +182 -0
  16. consenrich/data/dm6_sparse.bed +20000 -0
  17. consenrich/data/hg19.sizes +24 -0
  18. consenrich/data/hg19_blacklist.bed +834 -0
  19. consenrich/data/hg19_sparse.bed +288358 -0
  20. consenrich/data/hg38.sizes +24 -0
  21. consenrich/data/hg38_blacklist.bed +636 -0
  22. consenrich/data/hg38_sparse.bed +288699 -0
  23. consenrich/data/mm10.sizes +21 -0
  24. consenrich/data/mm10_blacklist.bed +3435 -0
  25. consenrich/data/mm10_sparse.bed +100400 -0
  26. consenrich/data/mm39.sizes +21 -0
  27. consenrich/data/mm39_blacklist.bed +3360 -0
  28. consenrich/data/mm39_sparse.bed +100381 -0
  29. consenrich/detrorm.py +249 -0
  30. consenrich/matching.py +907 -0
  31. consenrich/misc_util.py +122 -0
  32. consenrich-0.7.5b1.dist-info/METADATA +65 -0
  33. consenrich-0.7.5b1.dist-info/RECORD +37 -0
  34. consenrich-0.7.5b1.dist-info/WHEEL +6 -0
  35. consenrich-0.7.5b1.dist-info/entry_points.txt +2 -0
  36. consenrich-0.7.5b1.dist-info/licenses/LICENSE +21 -0
  37. consenrich-0.7.5b1.dist-info/top_level.txt +1 -0
consenrich/data/ce10.sizes ADDED
@@ -0,0 +1,6 @@
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+ chrI 15072423
2
+ chrII 15279345
3
+ chrIII 13783700
4
+ chrIV 17493793
5
+ chrV 20924149
6
+ chrX 17718866
consenrich/data/ce10_blacklist.bed ADDED
@@ -0,0 +1,100 @@
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+ chrI 669000 679400
2
+ chrI 931700 935600
3
+ chrI 3170700 3173300
4
+ chrI 3989200 3991600
5
+ chrI 4535300 4549400
6
+ chrI 5151000 5154700
7
+ chrI 10203200 10220100
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+ chrI 10265700 10277700
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+ chrI 10945100 10953900
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+ chrI 15059400 15373800
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+ chrII 0 1300
12
+ chrII 2569700 2571600
13
+ chrII 3464700 3469600
14
+ chrII 3795600 3798100
15
+ chrII 3993700 3995700
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+ chrII 4640300 4645900
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+ chrII 5143800 5147500
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+ chrII 6504400 6509800
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+ chrII 8286700 8293600
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+ chrII 8975300 8977400
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+ chrII 9631400 9633700
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+ chrII 10335100 10339700
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+ chrII 11527100 11530900
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+ chrII 12842800 12846900
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+ chrII 13597700 13600700
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+ chrII 13983900 13987500
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+ chrII 14323700 14340100
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+ chrII 14992100 14994300
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+ chrIII 449300 453600
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+ chrIII 930200 932600
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+ chrIII 1016500 1021400
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+ chrIII 1293500 1303900
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+ chrIII 5352200 5359400
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+ chrIII 7404700 7452200
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+ chrIII 7593800 7603300
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+ chrIII 8861100 8864700
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+ chrIII 10215600 10228400
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+ chrIII 13775100 14905900
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+ chrIV 2821200 2831500
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+ chrIV 3205500 3210300
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+ chrIV 3365800 3368900
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+ chrIV 4415600 4422900
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+ chrIV 6357100 6361700
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+ chrIV 6468100 6470600
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+ chrIV 6682800 6704100
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+ chrIV 6709900 6734000
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+ chrIV 7590900 7600100
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+ chrIV 8563000 8582700
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+ chrIV 9045100 9049600
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+ chrIV 10942600 10951900
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+ chrIV 11070000 11076700
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+ chrIV 12313600 12325600
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+ chrIV 12637100 12639400
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+ chrIV 13359700 13362800
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+ chrIV 13548500 13550400
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+ chrIV 14056400 14059900
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+ chrIV 14775600 14782300
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+ chrIV 15408400 15424900
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+ chrV 264100 268100
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+ chrV 1103700 1106100
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+ chrV 1637000 1639900
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+ chrV 3098000 3100300
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+ chrV 3434000 3441600
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+ chrV 5072400 5084800
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+ chrV 6171000 6183700
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+ chrV 6936700 6943800
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+ chrV 7442400 7445100
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+ chrV 8698600 8715600
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+ chrV 12509100 12511300
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+ chrV 14765800 14770600
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+ chrV 15425800 15436300
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+ chrV 16706300 16710300
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+ chrV 17114500 17133000
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+ chrV 17307700 17312400
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+ chrV 17383300 17395200
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+ chrV 18399500 18402500
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+ chrX 108300 115100
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+ chrX 273800 296200
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+ chrX 1635300 1645200
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+ chrX 11784800 11790300
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+ chrX 15806300 15812000
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+ chrX 16757900 16761600