consenrich 0.7.5b1__cp314-cp314-macosx_10_15_x86_64.whl
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- consenrich/__init__.py +11 -0
- consenrich/cconsenrich.c +48693 -0
- consenrich/cconsenrich.cpython-314-darwin.so +0 -0
- consenrich/cconsenrich.pyx +861 -0
- consenrich/consenrich.py +1384 -0
- consenrich/constants.py +172 -0
- consenrich/core.py +1438 -0
- consenrich/data/ce10.sizes +6 -0
- consenrich/data/ce10_blacklist.bed +100 -0
- consenrich/data/ce10_sparse.bed +11828 -0
- consenrich/data/ce11.sizes +6 -0
- consenrich/data/ce11_blacklist.bed +97 -0
- consenrich/data/ce11_sparse.bed +11828 -0
- consenrich/data/dm6.sizes +7 -0
- consenrich/data/dm6_blacklist.bed +182 -0
- consenrich/data/dm6_sparse.bed +20000 -0
- consenrich/data/hg19.sizes +24 -0
- consenrich/data/hg19_blacklist.bed +834 -0
- consenrich/data/hg19_sparse.bed +288358 -0
- consenrich/data/hg38.sizes +24 -0
- consenrich/data/hg38_blacklist.bed +636 -0
- consenrich/data/hg38_sparse.bed +288699 -0
- consenrich/data/mm10.sizes +21 -0
- consenrich/data/mm10_blacklist.bed +3435 -0
- consenrich/data/mm10_sparse.bed +100400 -0
- consenrich/data/mm39.sizes +21 -0
- consenrich/data/mm39_blacklist.bed +3360 -0
- consenrich/data/mm39_sparse.bed +100381 -0
- consenrich/detrorm.py +249 -0
- consenrich/matching.py +907 -0
- consenrich/misc_util.py +122 -0
- consenrich-0.7.5b1.dist-info/METADATA +65 -0
- consenrich-0.7.5b1.dist-info/RECORD +37 -0
- consenrich-0.7.5b1.dist-info/WHEEL +6 -0
- consenrich-0.7.5b1.dist-info/entry_points.txt +2 -0
- consenrich-0.7.5b1.dist-info/licenses/LICENSE +21 -0
- consenrich-0.7.5b1.dist-info/top_level.txt +1 -0
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chr2 17752011 17757811
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|
1816
|
+
chr2 19214711 19217711
|
|
1817
|
+
chr2 19503211 19515111
|
|
1818
|
+
chr2 19712711 19717011
|
|
1819
|
+
chr2 20043311 20072211
|
|
1820
|
+
chr2 20431611 20438111
|
|
1821
|
+
chr2 20903711 20905911
|
|
1822
|
+
chr2 21067411 21087011
|
|
1823
|
+
chr2 22054511 22092511
|
|
1824
|
+
chr2 22142111 22170311
|
|
1825
|
+
chr2 22627312 22635812
|
|
1826
|
+
chr2 22899612 22905012
|
|
1827
|
+
chr2 23164612 23194912
|
|
1828
|
+
chr2 23583712 23597912
|
|
1829
|
+
chr2 24083312 24089012
|
|
1830
|
+
chr2 26223112 26241912
|
|
1831
|
+
chr2 26649112 26653612
|
|
1832
|
+
chr2 26888212 26894412
|
|
1833
|
+
chr2 28073212 28095012
|
|
1834
|
+
chr2 30094612 30129612
|
|
1835
|
+
chr2 32271312 32378212
|
|
1836
|
+
chr2 33823012 33825312
|
|
1837
|
+
chr2 33939912 33941812
|
|
1838
|
+
chr2 34793912 34825912
|
|
1839
|
+
chr2 34980812 34999912
|
|
1840
|
+
chr2 35395012 35416712
|
|
1841
|
+
chr2 35898612 35909312
|
|
1842
|
+
chr2 36291912 36303112
|
|
1843
|
+
chr2 36398612 36405212
|
|
1844
|
+
chr2 36432812 36439112
|
|
1845
|
+
chr2 36651012 36656512
|
|
1846
|
+
chr2 36841912 36860712
|
|
1847
|
+
chr2 37046912 37075912
|
|
1848
|
+
chr2 37229712 37249412
|
|
1849
|
+
chr2 38454712 38456612
|
|
1850
|
+
chr2 39115412 39183212
|
|
1851
|
+
chr2 39250612 39257912
|
|
1852
|
+
chr2 39407812 39424812
|
|
1853
|
+
chr2 39668512 39675712
|
|
1854
|
+
chr2 39777512 39805812
|
|
1855
|
+
chr2 40021212 40130812
|
|
1856
|
+
chr2 40152512 40158612
|
|
1857
|
+
chr2 40656412 40684012
|
|
1858
|
+
chr2 40949512 40960212
|
|
1859
|
+
chr2 41058712 41061412
|
|
1860
|
+
chr2 41582812 41584812
|
|
1861
|
+
chr2 41634312 41641612
|
|
1862
|
+
chr2 41665112 41671512
|
|
1863
|
+
chr2 41785312 41787212
|
|
1864
|
+
chr2 41934512 41941612
|
|
1865
|
+
chr2 42090312 42130712
|
|
1866
|
+
chr2 42840112 42846612
|
|
1867
|
+
chr2 43237912 43246412
|
|
1868
|
+
chr2 44826612 44832412
|
|
1869
|
+
chr2 46114812 46116712
|
|
1870
|
+
chr2 46233112 46238112
|
|
1871
|
+
chr2 46464212 46469612
|
|
1872
|
+
chr2 46898612 46913512
|
|
1873
|
+
chr2 47086312 47089312
|
|
1874
|
+
chr2 47423612 47532612
|
|
1875
|
+
chr2 47832212 47833812
|
|
1876
|
+
chr2 48373012 48381012
|
|
1877
|
+
chr2 50433212 50435512
|
|
1878
|
+
chr2 50569612 50576812
|
|
1879
|
+
chr2 51442612 51445612
|
|
1880
|
+
chr2 51640912 51646012
|
|
1881
|
+
chr2 51771612 51780612
|
|
1882
|
+
chr2 51835912 51838412
|
|
1883
|
+
chr2 52585912 52608612
|
|
1884
|
+
chr2 52676812 52686312
|
|
1885
|
+
chr2 53207712 53211612
|
|
1886
|
+
chr2 53237812 53257012
|
|
1887
|
+
chr2 53523412 53532912
|
|
1888
|
+
chr2 53635712 53689812
|
|
1889
|
+
chr2 54142612 54148512
|
|
1890
|
+
chr2 54588012 54637912
|
|
1891
|
+
chr2 54752612 54785312
|
|
1892
|
+
chr2 55087512 55106412
|
|
1893
|
+
chr2 55198312 55243712
|
|
1894
|
+
chr2 55713812 55719012
|
|
1895
|
+
chr2 55750212 55764312
|
|
1896
|
+
chr2 55832012 55837812
|
|
1897
|
+
chr2 56082812 56084612
|
|
1898
|
+
chr2 56188712 56194912
|
|
1899
|
+
chr2 56355212 56361912
|
|
1900
|
+
chr2 56724312 56769112
|
|
1901
|
+
chr2 56878512 56880612
|
|
1902
|
+
chr2 57056412 57062912
|
|
1903
|
+
chr2 57104412 57113512
|
|
1904
|
+
chr2 57307412 57336512
|
|
1905
|
+
chr2 57518512 57523812
|
|
1906
|
+
chr2 57616612 57618512
|
|
1907
|
+
chr2 58102912 58153112
|
|
1908
|
+
chr2 58538312 58581912
|
|
1909
|
+
chr2 58771212 58792512
|
|
1910
|
+
chr2 59801644 59803144
|
|
1911
|
+
chr2 60868544 60873044
|
|
1912
|
+
chr2 61789944 61795644
|
|
1913
|
+
chr2 61853244 61870444
|
|
1914
|
+
chr2 62691444 62697544
|
|
1915
|
+
chr2 63127644 63133044
|
|
1916
|
+
chr2 63198444 63234244
|
|
1917
|
+
chr2 63292644 63314144
|
|
1918
|
+
chr2 63471544 63484944
|
|
1919
|
+
chr2 63548544 63555744
|
|
1920
|
+
chr2 63668444 63675644
|
|
1921
|
+
chr2 64139544 64149944
|
|
1922
|
+
chr2 64438744 64463744
|
|
1923
|
+
chr2 64529044 64533644
|
|
1924
|
+
chr2 65422844 65432544
|
|
1925
|
+
chr2 65568044 65611844
|
|
1926
|
+
chr2 66551944 66580744
|
|
1927
|
+
chr2 66675444 66682644
|
|
1928
|
+
chr2 67238744 67244844
|
|
1929
|
+
chr2 67770044 67776344
|
|
1930
|
+
chr2 68600744 68607044
|
|
1931
|
+
chr2 68748144 68754444
|
|
1932
|
+
chr2 69184244 69186944
|
|
1933
|
+
chr2 70093444 70100344
|
|
1934
|
+
chr2 70710444 70723244
|
|
1935
|
+
chr2 70885044 70901644
|
|
1936
|
+
chr2 71772344 71779844
|
|
1937
|
+
chr2 72100544 72106044
|
|
1938
|
+
chr2 73697344 73699244
|
|
1939
|
+
chr2 74194644 74232944
|
|
1940
|
+
chr2 74267944 74275244
|
|
1941
|
+
chr2 75329844 75334944
|
|
1942
|
+
chr2 77054344 77060844
|
|
1943
|
+
chr2 78148344 78169844
|
|
1944
|
+
chr2 79268044 79272244
|
|
1945
|
+
chr2 79766844 79774044
|
|
1946
|
+
chr2 79949344 79951844
|
|
1947
|
+
chr2 80050944 80088044
|
|
1948
|
+
chr2 80625944 80669044
|
|
1949
|
+
chr2 80709344 80710544
|
|
1950
|
+
chr2 80786844 80836344
|
|
1951
|
+
chr2 80899344 80905444
|
|
1952
|
+
chr2 81469744 81475144
|
|
1953
|
+
chr2 81581144 81587144
|
|
1954
|
+
chr2 81620344 81626244
|
|
1955
|
+
chr2 82160144 82170444
|
|
1956
|
+
chr2 82504144 82510244
|
|
1957
|
+
chr2 82544644 82558844
|
|
1958
|
+
chr2 82614244 82619844
|
|
1959
|
+
chr2 82699144 82718244
|
|
1960
|
+
chr2 82746644 82767144
|
|
1961
|
+
chr2 82950444 82976444
|
|
1962
|
+
chr2 83015444 83023544
|
|
1963
|
+
chr2 83156244 83158544
|
|
1964
|
+
chr2 83243844 83417844
|
|
1965
|
+
chr2 83695944 83723444
|
|
1966
|
+
chr2 83761944 83826144
|
|
1967
|
+
chr2 83911244 83915944
|
|
1968
|
+
chr2 84335344 84340844
|
|
1969
|
+
chr2 84362844 84364944
|
|
1970
|
+
chr2 84395144 84406344
|
|
1971
|
+
chr2 85515944 85532144
|
|
1972
|
+
chr2 85704344 85726644
|
|
1973
|
+
chr2 85848544 85852044
|
|
1974
|
+
chr2 86133744 86148044
|
|
1975
|
+
chr2 86169944 86177244
|
|
1976
|
+
chr2 86443044 86447844
|
|
1977
|
+
chr2 87211344 87213144
|
|
1978
|
+
chr2 87706044 87771644
|
|
1979
|
+
chr2 87997744 88042944
|
|
1980
|
+
chr2 88606544 88611144
|
|
1981
|
+
chr2 89036944 89107444
|
|
1982
|
+
chr2 89176044 89180744
|
|
1983
|
+
chr2 89591544 89605444
|
|
1984
|
+
chr2 89686744 89750444
|
|
1985
|
+
chr2 89957544 89963044
|
|
1986
|
+
chr2 89987444 90079444
|
|
1987
|
+
chr2 90103544 90109444
|
|
1988
|
+
chr2 90139644 90226444
|
|
1989
|
+
chr2 91922945 91925045
|
|
1990
|
+
chr2 91997545 91999445
|
|
1991
|
+
chr2 93655045 93680545
|
|
1992
|
+
chr2 94433145 94438145
|
|
1993
|
+
chr2 94464245 94486845
|
|
1994
|
+
chr2 94631345 94639745
|
|
1995
|
+
chr2 94683145 94721545
|
|
1996
|
+
chr2 94895045 94923845
|
|
1997
|
+
chr2 94978345 94998145
|
|
1998
|
+
chr2 95046245 95150945
|
|
1999
|
+
chr2 95245045 95250945
|
|
2000
|
+
chr2 95366745 95368745
|
|
2001
|
+
chr2 95478245 95484645
|
|
2002
|
+
chr2 95624845 95629545
|
|
2003
|
+
chr2 95759645 95764745
|
|
2004
|
+
chr2 96021745 96039245
|
|
2005
|
+
chr2 96378145 96397145
|
|
2006
|
+
chr2 96785045 96807645
|
|
2007
|
+
chr2 96851345 96864945
|
|
2008
|
+
chr2 97138345 97157945
|
|
2009
|
+
chr2 97501945 97516645
|
|
2010
|
+
chr2 97591045 97596145
|
|
2011
|
+
chr2 97702745 97788545
|
|
2012
|
+
chr2 98192045 98279945
|
|
2013
|
+
chr2 98489745 98498545
|
|
2014
|
+
chr2 98626845 98632245
|
|
2015
|
+
chr2 98850345 98887845
|
|
2016
|
+
chr2 99130545 99150645
|
|
2017
|
+
chr2 99774945 99800545
|
|
2018
|
+
chr2 99942345 99944645
|
|
2019
|
+
chr2 100054245 100068645
|
|
2020
|
+
chr2 100248745 100608245
|
|
2021
|
+
chr2 100957545 100983945
|
|
2022
|
+
chr2 101143445 101180945
|
|
2023
|
+
chr2 102658745 102660745
|
|
2024
|
+
chr2 103061645 103062645
|
|
2025
|
+
chr2 103682645 103703145
|
|
2026
|
+
chr2 104515245 104527645
|
|
2027
|
+
chr2 105079645 105089345
|
|
2028
|
+
chr2 105369645 105393545
|
|
2029
|
+
chr2 105656245 105695445
|
|
2030
|
+
chr2 106385445 106399645
|
|
2031
|
+
chr2 106964445 106971245
|
|
2032
|
+
chr2 107424245 107431545
|
|
2033
|
+
chr2 107540445 107542745
|
|
2034
|
+
chr2 108438945 108444345
|
|
2035
|
+
chr2 108775445 108803145
|
|
2036
|
+
chr2 109459745 109466345
|
|
2037
|
+
chr2 109847145 109855845
|
|
2038
|
+
chr2 109921445 109959045
|
|
2039
|
+
chr2 109987445 109993645
|
|
2040
|
+
chr2 110123045 110124945
|
|
2041
|
+
chr2 110376145 110413745
|
|
2042
|
+
chr2 110582745 110610445
|
|
2043
|
+
chr2 110837745 110848945
|
|
2044
|
+
chr2 110872345 110876945
|
|
2045
|
+
chr2 111003045 111010145
|
|
2046
|
+
chr2 111111845 111118245
|
|
2047
|
+
chr2 111375945 111383645
|
|
2048
|
+
chr2 111547245 111553245
|
|
2049
|
+
chr2 111675245 111696745
|
|
2050
|
+
chr2 111721245 111729245
|
|
2051
|
+
chr2 111884245 111916345
|
|
2052
|
+
chr2 112150045 112156545
|
|
2053
|
+
chr2 112353245 112400845
|
|
2054
|
+
chr2 112433145 112435445
|
|
2055
|
+
chr2 112531745 112538245
|
|
2056
|
+
chr2 112926145 112932745
|
|
2057
|
+
chr2 113161245 113163345
|
|
2058
|
+
chr2 113348745 113355245
|
|
2059
|
+
chr2 113394645 113396045
|
|
2060
|
+
chr2 113489645 113503545
|
|
2061
|
+
chr2 114011281 114017881
|
|
2062
|
+
chr2 114072881 114074481
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|
2063
|
+
chr2 114299681 114334481
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|
2064
|
+
chr2 116284781 116354481
|
|
2065
|
+
chr2 117660081 117665981
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|
2066
|
+
chr2 117848181 117850681
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|
2067
|
+
chr2 120439081 120480681
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|
2068
|
+
chr2 120640781 120651481
|
|
2069
|
+
chr2 121266081 121354081
|
|
2070
|
+
chr2 121769281 121788081
|
|
2071
|
+
chr2 122522320 122525120
|
|
2072
|
+
chr2 123129920 123136220
|
|
2073
|
+
chr2 123338720 123367220
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|
2074
|
+
chr2 123627120 123632620
|
|
2075
|
+
chr2 123844620 123846520
|
|
2076
|
+
chr2 124640720 124677720
|
|
2077
|
+
chr2 125466920 125477820
|
|
2078
|
+
chr2 126059320 126105720
|
|
2079
|
+
chr2 126287320 126289320
|
|
2080
|
+
chr2 126806820 126814020
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|
2081
|
+
chr2 127562320 127575920
|
|
2082
|
+
chr2 127892720 127895120
|
|
2083
|
+
chr2 128322320 128328820
|
|
2084
|
+
chr2 128614420 128616420
|
|
2085
|
+
chr2 129341320 129365320
|
|
2086
|
+
chr2 129444620 129455620
|
|
2087
|
+
chr2 131633720 131635720
|
|
2088
|
+
chr2 131750220 131773020
|
|
2089
|
+
chr2 131805820 131825620
|
|
2090
|
+
chr2 132727620 132732320
|
|
2091
|
+
chr2 132794320 132796420
|
|
2092
|
+
chr2 132895120 132925320
|
|
2093
|
+
chr2 133081220 133103720
|
|
2094
|
+
chr2 133775920 133779420
|
|
2095
|
+
chr2 134402020 134419820
|
|
2096
|
+
chr2 134503720 134514920
|
|
2097
|
+
chr2 134588520 134593020
|
|
2098
|
+
chr2 134988720 134993820
|
|
2099
|
+
chr2 135829520 135831620
|
|
2100
|
+
chr2 136076220 136128720
|
|
2101
|
+
chr2 136870120 136878920
|
|
2102
|
+
chr2 137187820 137211820
|
|
2103
|
+
chr2 137236420 137247520
|
|
2104
|
+
chr2 137481920 137484220
|
|
2105
|
+
chr2 137732120 137736920
|
|
2106
|
+
chr2 137876920 137898320
|
|
2107
|
+
chr2 138415620 138422320
|
|
2108
|
+
chr2 138463420 138466120
|
|
2109
|
+
chr2 138675520 138695020
|
|
2110
|
+
chr2 138746220 138776920
|
|
2111
|
+
chr2 139275120 139318120
|
|
2112
|
+
chr2 140187720 140194320
|
|
2113
|
+
chr2 142038920 142046320
|
|
2114
|
+
chr2 142306120 142325220
|
|
2115
|
+
chr2 142631020 142637520
|
|
2116
|
+
chr2 143117420 143132220
|
|
2117
|
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2118
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2119
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2120
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2121
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2122
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2123
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2124
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2125
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2126
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2127
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2129
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2130
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2132
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2161
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2163
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2166
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2172
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2222
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chr9 11792805 11798405
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3020
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chr9 11821405 11845405
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3021
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chr9 12282005 12287505
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3022
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chr9 12364905 12379605
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3023
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chr9 12469105 12472905
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3024
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chr9 12768205 12773805
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3025
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chr9 12840105 12851105
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3026
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chr9 12917605 12922305
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3027
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chr9 12998405 13045605
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3028
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chr9 13444796 13446996
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3029
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chr9 13905896 13907996
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3030
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chr9 14321796 14340596
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3031
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chr9 15035196 15048196
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3032
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chr9 16518696 16603196
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3033
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chr9 16744996 16772296
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3034
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3035
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chr9 16970296 16999296
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3036
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chr9 17109196 17118896
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3037
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chr9 17172696 17174696
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3038
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3039
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3040
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3041
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3042
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chr9 17921296 17926896
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3043
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3044
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3045
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3046
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3047
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3048
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3049
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3050
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3051
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3052
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3053
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3054
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3055
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3056
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3057
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3058
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3059
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3060
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3061
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3062
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3063
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3064
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3065
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3066
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3067
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3068
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3069
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3070
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chr9 30841096 30842396
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3071
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3072
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3073
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3074
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3075
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3076
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3077
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3078
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3079
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3080
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3081
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3082
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3083
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3084
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3085
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3086
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3087
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3088
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3089
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3090
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3091
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3092
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3093
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3094
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3095
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3096
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3097
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3098
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3099
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3100
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3101
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3102
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3103
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3104
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3105
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3106
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3107
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3108
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3109
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3110
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3111
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3112
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3113
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3114
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3115
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3116
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3117
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3118
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3119
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3120
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3121
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3122
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3123
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3124
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3125
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3126
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3127
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3128
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3129
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3130
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3131
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3132
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3138
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3139
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3140
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3141
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|
|
3321
|
+
chrX 131059449 131061549
|
|
3322
|
+
chrX 133049849 133051949
|
|
3323
|
+
chrX 133940849 133957449
|
|
3324
|
+
chrX 135360149 135404549
|
|
3325
|
+
chrX 135798649 135826549
|
|
3326
|
+
chrX 137202949 137225349
|
|
3327
|
+
chrX 142254296 142266996
|
|
3328
|
+
chrX 143482496 143506896
|
|
3329
|
+
chrX 144492796 144522796
|
|
3330
|
+
chrX 145365496 145371696
|
|
3331
|
+
chrX 145541096 145544896
|
|
3332
|
+
chrX 146402396 146403696
|
|
3333
|
+
chrX 152777796 152856196
|
|
3334
|
+
chrX 153025796 153027796
|
|
3335
|
+
chrX 157226896 157243496
|
|
3336
|
+
chrX 157902996 157937896
|
|
3337
|
+
chrX 159962196 159968596
|
|
3338
|
+
chrX 161164596 161167596
|
|
3339
|
+
chrX 163398096 163405196
|
|
3340
|
+
chrX 164846196 164867496
|
|
3341
|
+
chrX 165996396 166003196
|
|
3342
|
+
chrX 166028996 166035196
|
|
3343
|
+
chrY 924800 1005300
|
|
3344
|
+
chrY 1276400 1813700
|
|
3345
|
+
chrY 1834500 1940700
|
|
3346
|
+
chrY 1973200 1996400
|
|
3347
|
+
chrY 2017200 2068000
|
|
3348
|
+
chrY 2104700 2210800
|
|
3349
|
+
chrY 2280300 2288900
|
|
3350
|
+
chrY 2471300 3819300
|
|
3351
|
+
chrY 3880300 4177100
|
|
3352
|
+
chrY 4249500 4289100
|
|
3353
|
+
chrY 4432000 4956300
|
|
3354
|
+
chrY 5062400 5227700
|
|
3355
|
+
chrY 6376700 6382700
|
|
3356
|
+
chrY 6530200 6663200
|
|
3357
|
+
chrY 6760200 6835800
|
|
3358
|
+
chrY 6984100 8985400
|
|
3359
|
+
chrY 10638500 40959145
|
|
3360
|
+
chrY 41114545 90855967
|