consenrich 0.7.5b1__cp314-cp314-macosx_10_15_x86_64.whl

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Files changed (37) hide show
  1. consenrich/__init__.py +11 -0
  2. consenrich/cconsenrich.c +48693 -0
  3. consenrich/cconsenrich.cpython-314-darwin.so +0 -0
  4. consenrich/cconsenrich.pyx +861 -0
  5. consenrich/consenrich.py +1384 -0
  6. consenrich/constants.py +172 -0
  7. consenrich/core.py +1438 -0
  8. consenrich/data/ce10.sizes +6 -0
  9. consenrich/data/ce10_blacklist.bed +100 -0
  10. consenrich/data/ce10_sparse.bed +11828 -0
  11. consenrich/data/ce11.sizes +6 -0
  12. consenrich/data/ce11_blacklist.bed +97 -0
  13. consenrich/data/ce11_sparse.bed +11828 -0
  14. consenrich/data/dm6.sizes +7 -0
  15. consenrich/data/dm6_blacklist.bed +182 -0
  16. consenrich/data/dm6_sparse.bed +20000 -0
  17. consenrich/data/hg19.sizes +24 -0
  18. consenrich/data/hg19_blacklist.bed +834 -0
  19. consenrich/data/hg19_sparse.bed +288358 -0
  20. consenrich/data/hg38.sizes +24 -0
  21. consenrich/data/hg38_blacklist.bed +636 -0
  22. consenrich/data/hg38_sparse.bed +288699 -0
  23. consenrich/data/mm10.sizes +21 -0
  24. consenrich/data/mm10_blacklist.bed +3435 -0
  25. consenrich/data/mm10_sparse.bed +100400 -0
  26. consenrich/data/mm39.sizes +21 -0
  27. consenrich/data/mm39_blacklist.bed +3360 -0
  28. consenrich/data/mm39_sparse.bed +100381 -0
  29. consenrich/detrorm.py +249 -0
  30. consenrich/matching.py +907 -0
  31. consenrich/misc_util.py +122 -0
  32. consenrich-0.7.5b1.dist-info/METADATA +65 -0
  33. consenrich-0.7.5b1.dist-info/RECORD +37 -0
  34. consenrich-0.7.5b1.dist-info/WHEEL +6 -0
  35. consenrich-0.7.5b1.dist-info/entry_points.txt +2 -0
  36. consenrich-0.7.5b1.dist-info/licenses/LICENSE +21 -0
  37. consenrich-0.7.5b1.dist-info/top_level.txt +1 -0
consenrich/data/hg19.sizes ADDED
@@ -0,0 +1,24 @@
1
+ chr1 249250621
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+ chr10 135534747
3
+ chr11 135006516
4
+ chr12 133851895
5
+ chr13 115169878
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+ chr14 107349540
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+ chr15 102531392
8
+ chr16 90354753
9
+ chr17 81195210
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+ chr18 78077248
11
+ chr19 59128983
12
+ chr2 243199373
13
+ chr20 63025520
14
+ chr21 48129895
15
+ chr22 51304566
16
+ chr3 198022430
17
+ chr4 191154276
18
+ chr5 180915260
19
+ chr6 171115067
20
+ chr7 159138663
21
+ chr8 146364022
22
+ chr9 141213431
23
+ chrX 155270560
24
+ chrY 59373566