clinicedc 2.0.1__py3-none-any.whl → 2.0.2__py3-none-any.whl
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- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/METADATA +15 -22
- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/RECORD +854 -787
- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/WHEEL +1 -1
- edc_action_item/action.py +10 -30
- edc_action_item/action_with_notification.py +1 -2
- edc_action_item/admin/action_item_admin.py +2 -6
- edc_action_item/admin_site.py +1 -3
- edc_action_item/auths.py +1 -3
- edc_action_item/create_or_update_action_type.py +1 -3
- edc_action_item/data_fixers.py +6 -20
- edc_action_item/forms/action_item_form.py +1 -3
- edc_action_item/management/commands/inspect_action_items.py +3 -9
- edc_action_item/migrations/0001_initial.py +4 -5
- edc_action_item/migrations/0003_auto_20180116_1528.py +2 -1
- edc_action_item/migrations/0006_auto_20180707_1659.py +3 -4
- edc_action_item/migrations/0007_auto_20180707_1715.py +1 -3
- edc_action_item/migrations/0008_auto_20180809_0303.py +2 -1
- edc_action_item/migrations/0014_auto_20181121_1738.py +2 -6
- edc_action_item/migrations/0015_auto_20190114_0250.py +4 -3
- edc_action_item/migrations/0021_auto_20190628_2113.py +1 -3
- edc_action_item/migrations/0022_auto_20190628_2136.py +2 -6
- edc_action_item/migrations/0030_edcpermissions.py +1 -1
- edc_action_item/migrations/0033_alter_actionitem_managers.py +1 -0
- edc_action_item/migrations/0034_alter_actionitem_device_created_and_more.py +13 -37
- edc_action_item/models/action_item.py +2 -6
- edc_action_item/models/action_model_mixin.py +5 -16
- edc_action_item/models/action_type.py +1 -3
- edc_action_item/models/reference.py +1 -2
- edc_action_item/models/signals.py +3 -9
- edc_action_item/site_action_items.py +5 -15
- edc_action_item/templatetags/action_item_extras.py +1 -3
- edc_action_item/view_utils/action_item_button.py +1 -3
- edc_action_item/view_utils/action_item_popover_list_item.py +1 -2
- edc_adherence/migrations/0002_nonadherencereasons_plural_name.py +1 -3
- edc_adherence/model_admin_mixin.py +1 -3
- edc_adverse_event/action_items/ae_followup_action.py +2 -6
- edc_adverse_event/action_items/ae_initial_action.py +3 -7
- edc_adverse_event/auth_objects.py +2 -6
- edc_adverse_event/constants.py +1 -3
- edc_adverse_event/form_validator_mixins/death_report_form_validator.py +1 -3
- edc_adverse_event/form_validator_mixins/requires_death_report_form_validator_mixin.py +2 -7
- edc_adverse_event/form_validators/hospitalization.py +1 -3
- edc_adverse_event/migrations/0003_auto_20191026_2231.py +3 -9
- edc_adverse_event/migrations/0008_auto_20220825_0451.py +1 -1
- edc_adverse_event/migrations/0009_auto_20220907_0157.py +1 -1
- edc_adverse_event/migrations/0010_auto_20220913_2139.py +4 -12
- edc_adverse_event/migrations/0013_alter_aeactionclassification_device_created_and_more.py +11 -31
- edc_adverse_event/model_mixins/ae_followup/ae_followup_fields_model_mixin.py +1 -3
- edc_adverse_event/model_mixins/ae_followup/ae_followup_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/ae_initial/ae_initial_ae_model_mixin.py +1 -3
- edc_adverse_event/model_mixins/ae_initial/ae_initial_fields_model_mixin.py +1 -3
- edc_adverse_event/model_mixins/ae_initial/ae_initial_susar_model_mixin.py +1 -2
- edc_adverse_event/model_mixins/ae_special_interest/aesi_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/ae_susar/ae_susar_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/ae_tmg/ae_tmg_fields_model_mixin.py +2 -6
- edc_adverse_event/model_mixins/ae_tmg/ae_tmg_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/death_report/death_report_extra_fields_model_mixin.py +1 -2
- edc_adverse_event/model_mixins/death_report/death_report_model_mixin.py +2 -5
- edc_adverse_event/model_mixins/death_report/death_report_tmg_model_mixin.py +2 -7
- edc_adverse_event/model_mixins/death_report/simple_death_report_model_mixin.py +1 -3
- edc_adverse_event/modeladmin_mixins/ae_tmg_admin_mixin.py +1 -3
- edc_adverse_event/modeladmin_mixins/death_report_admin_mixin.py +6 -10
- edc_adverse_event/modelform_mixins/ae_tmg_modelform_mixin.py +1 -3
- edc_adverse_event/models/signals.py +3 -9
- edc_adverse_event/pdf_reports/ae_pdf_report.py +6 -18
- edc_adverse_event/pdf_reports/death_pdf_report.py +3 -9
- edc_adverse_event/templatetags/edc_adverse_event_extras.py +5 -15
- edc_adverse_event/utils.py +2 -6
- edc_adverse_event/view_mixins/ae/ae_listboard_view_mixin.py +1 -3
- edc_adverse_event/view_mixins/ae/death_report_listboard_view_mixin.py +1 -3
- edc_adverse_event/view_mixins/tmg/tmg_ae_listboard_view_mixin.py +2 -6
- edc_adverse_event/view_utils/tmg_button.py +2 -6
- edc_adverse_event/views/home_view.py +1 -3
- edc_adverse_event/views/tmg/death_listboard_view.py +1 -3
- edc_adverse_event/views/tmg/home_view.py +2 -6
- edc_adverse_event/views/tmg/summary_listboard_view.py +1 -3
- edc_appointment/admin/appointment_admin.py +1 -3
- edc_appointment/admin/list_filters.py +1 -3
- edc_appointment/admin_site.py +1 -3
- edc_appointment/analytics/dataframes/get_appointment_df.py +2 -6
- edc_appointment/appointment_reason_updater.py +2 -5
- edc_appointment/appointment_status_updater.py +1 -4
- edc_appointment/constants.py +1 -3
- edc_appointment/creators/appointment_creator.py +4 -10
- edc_appointment/creators/unscheduled_appointment_creator.py +3 -7
- edc_appointment/creators/utils.py +4 -0
- edc_appointment/form_validator_mixins/next_appointment_crf_form_validator_mixin.py +3 -10
- edc_appointment/form_validator_mixins/window_period_form_validator_mixin.py +3 -9
- edc_appointment/form_validators/appointment_form_validator.py +11 -37
- edc_appointment/form_validators/next_appointment_crf_form_validator.py +1 -3
- edc_appointment/form_validators/utils.py +1 -3
- edc_appointment/managers.py +2 -6
- edc_appointment/migrations/0002_auto_20161126_1156.py +5 -8
- edc_appointment/migrations/0003_auto_20161127_2226.py +7 -16
- edc_appointment/migrations/0006_auto_20170106_2118.py +2 -1
- edc_appointment/migrations/0008_auto_20171115_1601.py +3 -4
- edc_appointment/migrations/0014_auto_20180116_1411.py +2 -1
- edc_appointment/migrations/0024_auto_20200911_0425.py +1 -1
- edc_appointment/migrations/0034_appointmenttype_alter_appointment_appt_type_and_more.py +2 -4
- edc_appointment/migrations/0036_auto_20230124_1822.py +2 -6
- edc_appointment/migrations/0040_appointment_appt_type_other_and_more.py +1 -0
- edc_appointment/migrations/0042_alter_appointment_device_created_and_more.py +5 -13
- edc_appointment/migrations/0046_infosources.py +1 -3
- edc_appointment/migrations/0047_alter_appointment_options_and_more.py +1 -3
- edc_appointment/model_mixins/appointment_methods_model_mixin.py +1 -5
- edc_appointment/model_mixins/appointment_model_mixin.py +2 -8
- edc_appointment/model_mixins/next_appointment_crf_model_mixin.py +1 -3
- edc_appointment/modeladmin_mixins/next_appointment_crf_modeladmin_mixin.py +1 -3
- edc_appointment/modelform_mixins/next_appointment_crf_modelform_mixins.py +1 -5
- edc_appointment/models/signals.py +5 -17
- edc_appointment/utils.py +11 -33
- edc_appointment/view_mixins/appointment_view_mixin.py +2 -6
- edc_auth/admin/list_filters.py +2 -6
- edc_auth/admin/role_admin.py +1 -3
- edc_auth/admin/user_admin.py +4 -12
- edc_auth/admin/user_profile_admin.py +2 -5
- edc_auth/auth_updater/auth_updater.py +1 -3
- edc_auth/auth_updater/group_updater.py +3 -9
- edc_auth/forms.py +1 -3
- edc_auth/get_app_codenames.py +1 -3
- edc_auth/import_users.py +3 -9
- edc_auth/management/commands/export_users.py +1 -3
- edc_auth/management/commands/reset_password.py +1 -3
- edc_auth/migrations/0001_squashed_0033_alter_userprofile_is_multisite_viewer.py +4 -12
- edc_auth/migrations/0015_auto_20191026_2149.py +1 -3
- edc_auth/migrations/0016_auto_20191026_2153.py +1 -3
- edc_auth/migrations/0025_permissions.py +1 -1
- edc_auth/migrations/0029_alter_edcpermissions_device_created_and_more.py +5 -13
- edc_auth/models/__init__.py +1 -3
- edc_auth/models/signals.py +2 -6
- edc_auth/models/user_profile.py +1 -3
- edc_auth/password_setter.py +1 -3
- edc_auth/system_checks.py +1 -5
- edc_auth/urls_for_accounts.py +1 -3
- edc_auth/utils.py +3 -9
- edc_consent/actions.py +3 -9
- edc_consent/consent_definition.py +2 -6
- edc_consent/consent_definition_extension.py +4 -12
- edc_consent/field_mixins/citizen_fields_mixin.py +2 -4
- edc_consent/field_mixins/identity_fields_mixin.py +1 -2
- edc_consent/field_mixins/personal_fields_mixin.py +8 -3
- edc_consent/field_mixins/site_fields_mixin.py +1 -2
- edc_consent/form_validators/subject_consent_form_validator.py +2 -7
- edc_consent/migrations/0001_initial.py +1 -1
- edc_consent/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_consent/model_mixins/consent_extension_model_mixin.py +1 -3
- edc_consent/model_mixins/consent_model_mixin.py +3 -9
- edc_consent/modeladmin_mixins/consent_model_admin_mixin.py +7 -17
- edc_consent/modelform_mixins/consent_modelform_mixin/consent_modelform_validation_mixin.py +3 -8
- edc_consent/modelform_mixins/requires_consent_modelform_mixin.py +1 -3
- edc_consent/models/signals.py +2 -6
- edc_consent/site_consents.py +5 -17
- edc_consent/system_checks.py +3 -9
- edc_consent/validators.py +1 -2
- edc_consent/view_mixins/consent_view_mixins.py +3 -5
- edc_crf/crf_form_validator.py +2 -6
- edc_crf/crf_form_validator_mixins.py +2 -6
- edc_crf/migrations/0004_alter_crfstatus_device_created_and_more.py +3 -7
- edc_crf/utils.py +1 -3
- edc_dashboard/management/commands/update_search_slugs.py +1 -3
- edc_dashboard/migrations/0001_initial.py +1 -1
- edc_dashboard/migrations/0003_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_dashboard/templatetags/edc_dashboard_extras.py +2 -6
- edc_dashboard/view_mixins/administration_view_mixin.py +1 -3
- edc_dashboard/view_mixins/edc_view_mixin.py +1 -3
- edc_dashboard/views/administration_view.py +1 -3
- edc_data_manager/action_items.py +1 -3
- edc_data_manager/admin/actions.py +3 -9
- edc_data_manager/admin/data_query_admin.py +4 -12
- edc_data_manager/admin/query_rule_admin.py +4 -13
- edc_data_manager/auths.py +1 -3
- edc_data_manager/forms/data_query.py +2 -6
- edc_data_manager/forms/query_rule.py +1 -3
- edc_data_manager/get_longitudinal_value.py +2 -5
- edc_data_manager/handlers/handlers.py +2 -6
- edc_data_manager/migrations/0001_initial.py +4 -3
- edc_data_manager/migrations/0003_auto_20190806_1749.py +2 -6
- edc_data_manager/migrations/0004_auto_20190806_1750.py +1 -3
- edc_data_manager/migrations/0025_edcpermissions.py +1 -1
- edc_data_manager/migrations/0027_alter_dataquery_dm_user.py +1 -1
- edc_data_manager/migrations/0028_alter_dataquery_options_alter_queryrule_options_and_more.py +2 -1
- edc_data_manager/migrations/0029_alter_dataquery_managers.py +2 -1
- edc_data_manager/migrations/0030_alter_datadictionary_device_created_and_more.py +15 -43
- edc_data_manager/models/model_mixins.py +1 -3
- edc_data_manager/populate_data_dictionary.py +1 -2
- edc_data_manager/post_migrate_signals.py +1 -3
- edc_data_manager/site_data_manager.py +1 -3
- edc_document_status/model_mixins.py +1 -3
- edc_egfr/__init__.py +1 -0
- edc_egfr/admin/__init__.py +1 -0
- edc_egfr/admin/egfr_drop_notification_admin_mixin.py +73 -0
- edc_egfr/apps.py +5 -0
- edc_egfr/calculators/__init__.py +4 -0
- edc_egfr/calculators/base_egrfr.py +56 -0
- edc_egfr/calculators/egfr_ckd_epi.py +68 -0
- edc_egfr/calculators/egfr_cockcroft_gault.py +63 -0
- edc_egfr/calculators/percent_change.py +7 -0
- edc_egfr/constants.py +1 -0
- edc_egfr/egfr.py +237 -0
- edc_egfr/form_validator_mixins/__init__.py +4 -0
- edc_egfr/form_validator_mixins/egfr_form_validator_mixins.py +55 -0
- edc_egfr/get_drop_notification_model.py +10 -0
- edc_egfr/get_egfr_for_subject.py +31 -0
- edc_egfr/model_mixins/__init__.py +2 -0
- edc_egfr/model_mixins/egfr_drop_notification_model_mixin.py +63 -0
- edc_egfr/model_mixins/egfr_model_mixin.py +120 -0
- edc_export/archive_exporter.py +2 -6
- edc_export/exportables.py +2 -6
- edc_export/files_emailer.py +1 -3
- edc_export/management/commands/import_receipts.py +1 -3
- edc_export/managers.py +3 -9
- edc_export/migrations/0001_initial.py +15 -36
- edc_export/migrations/0005_exportdata_importdata.py +1 -3
- edc_export/migrations/0006_auto_20200512_0208.py +2 -6
- edc_export/migrations/0010_auto_20210910_1636.py +2 -6
- edc_export/migrations/0013_edcpermissions.py +1 -1
- edc_export/migrations/0015_alter_datarequest_managers_and_more.py +2 -1
- edc_export/migrations/0016_alter_datarequest_device_created_and_more.py +27 -79
- edc_export/migrations/0017_alter_datarequest_options_and_more.py +2 -6
- edc_export/migrations/0020_remove_datarequesthistory_edc_export__exporte_ba8050_idx_and_more.py +2 -6
- edc_export/model_exporter/model_exporter.py +4 -15
- edc_export/model_exporter/object_history_helpers.py +1 -3
- edc_export/model_exporter/value_getter.py +5 -14
- edc_export/models/signals.py +1 -3
- edc_export/models/upload_export_receipt_file.py +1 -3
- edc_export/utils.py +1 -4
- edc_export/views/export_selected_models_view.py +6 -17
- edc_facility/default_definitions.py +1 -3
- edc_facility/facility.py +4 -14
- edc_facility/import_holidays.py +1 -3
- edc_facility/migrations/0005_healthfacility_healthfacilitytypes_and_more.py +4 -6
- edc_facility/migrations/0006_alter_healthfacility_health_facility_type.py +1 -1
- edc_facility/migrations/0008_alter_healthfacility_device_created_and_more.py +5 -13
- edc_facility/models/holiday.py +1 -3
- edc_facility/utils.py +1 -3
- edc_fieldsets/fieldsets_modeladmin_mixin.py +1 -3
- edc_form_describer/form_describer.py +3 -9
- edc_form_describer/make_forms_reference.py +1 -3
- edc_form_describer/management/commands/make_forms_reference.py +1 -3
- edc_form_runners/admin/issue_admin.py +2 -6
- edc_form_runners/form_runner.py +4 -13
- edc_form_runners/form_runner_by_scr_id.py +1 -3
- edc_form_runners/get_form_runner.py +1 -3
- edc_form_runners/get_form_runner_by_src_id.py +3 -3
- edc_form_runners/management/commands/run_form_runners.py +1 -3
- edc_form_runners/migrations/0001_initial.py +2 -4
- edc_form_runners/run_form_runners.py +1 -3
- edc_form_runners/utils.py +1 -3
- edc_form_validators/applicable_field_validator.py +6 -17
- edc_form_validators/base_form_validator.py +1 -3
- edc_form_validators/date_range_validator.py +4 -12
- edc_form_validators/date_validator.py +3 -9
- edc_form_validators/many_to_many_field_validator.py +1 -3
- edc_form_validators/other_specify_field_validator.py +3 -7
- edc_form_validators/range_field_validator.py +1 -3
- edc_form_validators/required_field_validator.py +5 -18
- edc_glucose/__init__.py +0 -0
- edc_glucose/apps.py +6 -0
- edc_glucose/constants.py +3 -0
- edc_glucose/fieldsets.py +14 -0
- edc_glucose/form_validators/__init__.py +6 -0
- edc_glucose/form_validators/fasting_form_validator.py +12 -0
- edc_glucose/form_validators/fbg_form_validator_mixin.py +32 -0
- edc_glucose/form_validators/fbg_ogtt_form_validator_mixin.py +47 -0
- edc_glucose/form_validators/glucose_form_validator.py +44 -0
- edc_glucose/form_validators/glucose_form_validator_mixin.py +53 -0
- edc_glucose/form_validators/ogtt_form_validator_mixin.py +91 -0
- edc_glucose/list_filters.py +42 -0
- edc_glucose/migrations/__init__.py +0 -0
- edc_glucose/model_mixin_factories/__init__.py +4 -0
- edc_glucose/model_mixin_factories/fasting_model_mixin_factory.py +63 -0
- edc_glucose/model_mixin_factories/fbg_model_mixin_factory.py +48 -0
- edc_glucose/model_mixin_factories/glucose_model_mixin_factory.py +49 -0
- edc_glucose/model_mixin_factories/ogtt_model_mixin_factory.py +71 -0
- edc_glucose/model_mixins/__init__.py +5 -0
- edc_glucose/model_mixins/fasting_model_mixin.py +15 -0
- edc_glucose/model_mixins/fbg_model_mixin.py +10 -0
- edc_glucose/model_mixins/glucose_model_mixin.py +17 -0
- edc_glucose/model_mixins/hba1c_model_mixin.py +42 -0
- edc_glucose/model_mixins/ogtt_model_mixin.py +10 -0
- edc_glucose/models.py +0 -0
- edc_glucose/utils.py +42 -0
- edc_identifier/admin_site.py +1 -3
- edc_identifier/identifier.py +1 -3
- edc_identifier/migrations/0001_initial.py +3 -4
- edc_identifier/migrations/0001_squashed_0018_auto_20180128_1054.py +3 -2
- edc_identifier/migrations/0005_alter_identifiermodel_managers.py +2 -1
- edc_identifier/migrations/0005_historicalidentifierhistory_historicalidentifiertracker_historicalsubjectidentifier.py +4 -5
- edc_identifier/migrations/0006_auto_20161127_2226.py +16 -43
- edc_identifier/migrations/0007_alter_identifiermodel_device_created_and_more.py +3 -7
- edc_identifier/migrations/0007_auto_20161204_2227.py +4 -7
- edc_identifier/migrations/0009_auto_20161221_2323.py +1 -0
- edc_identifier/migrations/0010_auto_20170112_0602.py +2 -1
- edc_identifier/migrations/0012_auto_20171116_1606.py +2 -1
- edc_identifier/migrations/0013_auto_20171230_1316.py +3 -9
- edc_identifier/research_identifier.py +3 -11
- edc_identifier/short_identifier.py +5 -9
- edc_identifier/utils.py +1 -3
- edc_lab/admin/modeladmin_mixins.py +2 -8
- edc_lab/aliquot_types.py +1 -3
- edc_lab/form_validators/requisition_form_validator_mixin.py +1 -3
- edc_lab/forms/box_type_form.py +4 -6
- edc_lab/lab/aliquot_type.py +2 -6
- edc_lab/lab/manifest.py +2 -6
- edc_lab/lab/primary_aliquot.py +1 -3
- edc_lab/lab/requisition_panel.py +1 -3
- edc_lab/lab/requisition_panel_group.py +2 -6
- edc_lab/lab/specimen.py +1 -3
- edc_lab/labels/aliquot_label.py +4 -6
- edc_lab/labels/manifest_label.py +1 -3
- edc_lab/migrations/0001_initial.py +12 -29
- edc_lab/migrations/0002_auto_20170305_1939.py +4 -12
- edc_lab/migrations/0007_auto_20170321_1119.py +2 -6
- edc_lab/migrations/0008_auto_20170921_0719.py +2 -1
- edc_lab/migrations/0010_auto_20171127_1541.py +3 -2
- edc_lab/migrations/0012_auto_20180114_1438.py +2 -1
- edc_lab/migrations/0013_auto_20180117_1438.py +2 -1
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- edc_pharmacy/views/print_labels_view.py +1 -3
- edc_pharmacy/views/print_stock_transfer_manifest_view.py +1 -3
- edc_pharmacy/views/transfer_stock_view.py +1 -3
- edc_prn/modelform_mixins.py +1 -3
- edc_prn/prn.py +2 -6
- edc_prn/templatetags/edc_prn_extras.py +4 -8
- edc_protocol/research_protocol_config.py +2 -5
- edc_protocol_incident/admin/protocol_deviation_violation_admin.py +1 -3
- edc_protocol_incident/auth_objects.py +1 -3
- edc_protocol_incident/auths.py +1 -3
- edc_protocol_incident/form_validators/mixins.py +3 -9
- edc_protocol_incident/form_validators/protocol_deviation_violation_form_validator.py +6 -18
- edc_protocol_incident/form_validators/protocol_incident_form_validator.py +3 -8
- edc_protocol_incident/migrations/0001_initial.py +4 -3
- edc_protocol_incident/migrations/0001_squashed_0015_auto_20220927_0401.py +7 -12
- edc_protocol_incident/migrations/0005_protocolincident_historicalprotocolincident_and_more.py +4 -3
- edc_protocol_incident/migrations/0012_auto_20220913_2139.py +3 -9
- edc_protocol_incident/migrations/0020_alter_historicalprotocoldeviationviolation_device_created_and_more.py +9 -25
- edc_protocol_incident/model_mixins/protocol_deviation_violation_model_mixin.py +3 -7
- edc_protocol_incident/model_mixins/protocol_incident_model_mixin.py +1 -3
- edc_protocol_incident/urls.py +1 -3
- edc_pylabels/actions.py +2 -6
- edc_pylabels/admin/label_configuration_admin.py +4 -4
- edc_pylabels/drawing_callable_example.py +1 -3
- edc_pylabels/migrations/0001_initial.py +1 -3
- edc_pylabels/migrations/0002_alter_label_options_label_created_and_more.py +2 -6
- edc_pylabels/migrations/0005_labelconfiguration_delete_label_and_more.py +1 -3
- edc_pylabels/models/label_configuration.py +1 -3
- edc_qareports/migrations/0001_initial.py +3 -4
- edc_qareports/migrations/0005_edcpermissions.py +2 -4
- edc_qareports/migrations/0006_qareportlog.py +2 -1
- edc_qareports/migrations/0007_qareportlog_edc_qarepor_accesse_738ffe_idx.py +1 -3
- edc_qareports/migrations/0017_auto_20240816_0256.py +1 -0
- edc_qareports/model_mixins/note_model_mixin.py +1 -3
- edc_qareports/modeladmin_mixins/list_filters.py +8 -12
- edc_qareports/modeladmin_mixins/note_modeladmin_mixin.py +1 -3
- edc_qareports/modeladmin_mixins/on_study_missing_values_modeladmin_mixin.py +2 -6
- edc_qareports/modeladmin_mixins/qa_report_modeladmin_mixin.py +1 -3
- edc_qareports/sql_generator/crf_case.py +1 -5
- edc_qareports/sql_generator/sql_view_generator.py +1 -3
- edc_qareports/utils.py +2 -6
- edc_randomization/admin.py +1 -3
- edc_randomization/auths.py +2 -6
- edc_randomization/blinding.py +1 -3
- edc_randomization/migrations/0001_initial.py +3 -4
- edc_randomization/migrations/0009_edcpermissions.py +1 -1
- edc_randomization/migrations/0011_alter_edcpermissions_device_created_and_more.py +7 -19
- edc_randomization/model_mixins.py +2 -5
- edc_randomization/randomization_list_importer.py +3 -7
- edc_randomization/randomization_list_verifier.py +2 -7
- edc_randomization/randomizer.py +2 -6
- edc_randomization/site_randomizers.py +1 -3
- edc_randomization/system_checks.py +1 -3
- edc_randomization/utils.py +2 -6
- edc_refusal/admin.py +1 -3
- edc_refusal/forms.py +1 -2
- edc_refusal/migrations/0001_initial.py +2 -1
- edc_refusal/migrations/0002_historicalsubjectrefusal.py +6 -4
- edc_refusal/migrations/0004_refusalreasons_plural_name.py +1 -3
- edc_refusal/migrations/0005_alter_subjectrefusal_options_and_more.py +2 -1
- edc_refusal/migrations/0006_alter_subjectrefusal_managers.py +2 -1
- edc_refusal/migrations/0008_alter_historicalsubjectrefusal_device_created_and_more.py +5 -13
- edc_registration/admin_site.py +1 -3
- edc_registration/migrations/0001_initial.py +3 -4
- edc_registration/migrations/0002_auto_20161127_2226.py +4 -7
- edc_registration/migrations/0004_auto_20161221_0018.py +2 -1
- edc_registration/migrations/0005_auto_20170111_1809.py +2 -1
- edc_registration/migrations/0008_auto_20170810_1032.py +2 -1
- edc_registration/migrations/0012_auto_20180116_1528.py +2 -1
- edc_registration/migrations/0015_auto_20181006_2257.py +1 -1
- edc_registration/migrations/0016_historicalregisteredsubject.py +5 -6
- edc_registration/migrations/0026_historicalregisteredsubject_familiar_name_and_more.py +1 -1
- edc_registration/migrations/0028_alter_registeredsubject_managers.py +1 -1
- edc_registration/migrations/0029_alter_historicalregisteredsubject_device_created_and_more.py +5 -13
- edc_registration/modeladmin_mixins.py +1 -3
- edc_registration/models/registered_subject.py +4 -11
- edc_registration/utils.py +1 -3
- edc_reportable/admin_site.py +1 -3
- edc_reportable/data/normal_data/africa.py +4 -14
- edc_reportable/evaluator.py +2 -6
- edc_reportable/formula.py +2 -6
- edc_reportable/management/commands/export_reportables.py +1 -3
- edc_reportable/migrations/0001_initial.py +3 -9
- edc_reportable/migrations/0003_referencerangecollection_grade1_and_more.py +3 -9
- edc_reportable/migrations/0004_alter_referencerangecollection_grade3_and_more.py +4 -7
- edc_reportable/migrations/0006_alter_gradingdata_revision_and_more.py +8 -19
- edc_reportable/models/mw.py +1 -3
- edc_reportable/models/reference_model_mixins.py +1 -3
- edc_reportable/models/reference_range_collection.py +3 -9
- edc_reportable/post_migrate_signals.py +1 -3
- edc_reportable/reference_range_evaluator.py +4 -11
- edc_reportable/utils/convert_units.py +1 -3
- edc_reportable/utils/get_grade_for_value.py +3 -1
- edc_reportable/utils/get_reference_range_collection.py +2 -2
- edc_reportable/utils/load_data.py +1 -3
- edc_reportable/utils/update_grading_data.py +2 -6
- edc_review_dashboard/migrations/0001_initial.py +1 -1
- edc_review_dashboard/migrations/0003_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_review_dashboard/views/subject_review_listboard_view.py +1 -3
- edc_screening/eligibility.py +1 -3
- edc_screening/fc.py +1 -3
- edc_screening/migrations/0001_initial.py +1 -1
- edc_screening/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_screening/model_mixins/eligibility_model_mixin.py +1 -3
- edc_screening/model_mixins/screening_fields_model_mixin.py +2 -0
- edc_screening/modelform_mixins.py +1 -3
- edc_search/search_slug.py +2 -6
- edc_search/updater.py +2 -5
- edc_sites/admin/site_model_admin_mixin.py +4 -12
- edc_sites/management/commands/sync_sites.py +1 -3
- edc_sites/migrations/0007_edcpermissions.py +2 -4
- edc_sites/single_site/get_languages.py +1 -3
- edc_sites/site.py +4 -11
- edc_sites/system_checks.py +1 -4
- edc_sites/utils/add_or_update_django_sites.py +1 -3
- edc_subject_dashboard/migrations/0001_initial.py +1 -1
- edc_subject_dashboard/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_subject_dashboard/requisition_labels.py +1 -3
- edc_subject_dashboard/requisition_report.py +5 -15
- edc_subject_dashboard/requisition_verifier.py +2 -7
- edc_subject_dashboard/templatetags/edc_subject_dashboard_extras.py +2 -6
- edc_subject_dashboard/view_mixins/subject_visit_view_mixin.py +1 -2
- edc_subject_dashboard/view_utils/crf_button.py +1 -3
- edc_subject_dashboard/view_utils/subject_consent_listboard_button.py +1 -3
- edc_subject_dashboard/view_utils/timepoint_status_button.py +1 -3
- edc_subject_dashboard/views/requisition_print_actions_view.py +4 -12
- edc_subject_dashboard/views/requisition_verify_actions_view.py +1 -3
- edc_subject_dashboard/views/subject_dashboard_view.py +1 -3
- edc_timepoint/apps.py +1 -3
- edc_timepoint/timepoint.py +1 -3
- edc_timepoint/timepoint_lookup.py +1 -3
- edc_transfer/form_validators.py +4 -6
- edc_transfer/model_mixins.py +1 -3
- edc_transfer/modelform_mixins.py +1 -3
- edc_unblinding/action_items.py +1 -3
- edc_unblinding/admin_site.py +1 -3
- edc_unblinding/migrations/0001_initial.py +6 -4
- edc_unblinding/migrations/0002_auto_20210908_2318.py +1 -1
- edc_unblinding/migrations/0009_alter_unblindingrequest_managers_and_more.py +2 -1
- edc_unblinding/migrations/0010_alter_historicalunblindingrequest_device_created_and_more.py +9 -25
- edc_unblinding/models/unblinding_request.py +1 -3
- edc_unblinding/models/unblinding_review.py +1 -3
- edc_utils/age.py +1 -3
- edc_utils/date.py +1 -3
- edc_utils/paths_for_urlpatterns.py +1 -3
- edc_utils/show_urls.py +1 -3
- edc_utils/text.py +1 -2
- edc_view_utils/model_button.py +5 -13
- edc_view_utils/query_button.py +1 -3
- edc_visit_schedule/admin/subject_schedule_history_admin.py +1 -3
- edc_visit_schedule/baseline.py +1 -3
- edc_visit_schedule/migrations/0001_initial.py +3 -4
- edc_visit_schedule/migrations/0003_historicalvisitschedule_visitschedule.py +1 -3
- edc_visit_schedule/migrations/0004_auto_20190629_1800.py +1 -3
- edc_visit_schedule/migrations/0011_alter_historicalvisitschedule_device_created_and_more.py +7 -19
- edc_visit_schedule/migrations/0012_alter_subjectschedulehistory_managers_and_more.py +2 -1
- edc_visit_schedule/migrations/0015_historicalonschedule_offschedule_onschedule.py +9 -13
- edc_visit_schedule/migrations/0017_alter_onschedule_managers.py +2 -1
- edc_visit_schedule/model_mixins/crf/crf_schedule_model_mixin.py +1 -1
- edc_visit_schedule/model_mixins/off_schedule_model_mixin.py +2 -6
- edc_visit_schedule/model_mixins/on_schedule_model_mixin.py +1 -3
- edc_visit_schedule/modelform_mixins/off_schedule_modelform_mixin.py +1 -3
- edc_visit_schedule/models/subject_schedule_history.py +3 -8
- edc_visit_schedule/ordered_collection.py +1 -3
- edc_visit_schedule/schedule/schedule.py +6 -17
- edc_visit_schedule/simple_model_validator.py +3 -8
- edc_visit_schedule/site_visit_schedules.py +5 -15
- edc_visit_schedule/subject_schedule.py +4 -16
- edc_visit_schedule/system_checks.py +1 -3
- edc_visit_schedule/utils.py +8 -17
- edc_visit_schedule/view_mixins.py +4 -10
- edc_visit_schedule/visit/crf.py +1 -2
- edc_visit_schedule/visit/requisition.py +1 -3
- edc_visit_schedule/visit/visit.py +6 -16
- edc_visit_schedule/visit/window_period.py +3 -3
- edc_visit_schedule/visit_schedule/visit_schedule.py +2 -5
- edc_visit_tracking/crf_date_validator.py +1 -2
- edc_visit_tracking/form_validators/visit_form_validator.py +2 -8
- edc_visit_tracking/form_validators/visit_missed_form_validator.py +3 -9
- edc_visit_tracking/migrations/0003_auto_20220913_2139.py +2 -6
- edc_visit_tracking/migrations/0004_subjectvisit_subjectvisitmissedreasons_extra_value_and_more.py +8 -16
- edc_visit_tracking/model_mixins/base/visit_methods_model_mixin.py +2 -6
- edc_visit_tracking/model_mixins/crfs/visit_tracking_crf_model_mixin.py +1 -3
- edc_visit_tracking/model_mixins/requisitions/visit_tracking_requisition_model_mixin.py +1 -3
- edc_visit_tracking/model_mixins/subject_visit_missed_model_mixin.py +1 -3
- edc_visit_tracking/model_mixins/visit_model_mixin/visit_model_fields_mixin.py +1 -2
- edc_visit_tracking/modeladmin_mixins/crf_model_admin_mixin.py +4 -8
- edc_visit_tracking/modeladmin_mixins/visit_model_admin_mixin.py +4 -6
- edc_visit_tracking/modelform_mixins/crf/visit_tracking_crf_modelform_mixin.py +2 -6
- edc_visit_tracking/modelform_mixins/utils.py +1 -3
- edc_visit_tracking/modelform_mixins/visit_tracking_modelform_mixin.py +1 -2
- edc_visit_tracking/models/signals.py +1 -3
- edc_visit_tracking/stubs.py +1 -3
- edc_visit_tracking/utils.py +1 -2
- edc_visit_tracking/view_utils/related_visit_button.py +1 -3
- edc_visit_tracking/visit_sequence.py +1 -3
- edc_vitals/__init__.py +2 -0
- edc_vitals/apps.py +6 -0
- edc_vitals/calculators/__init__.py +1 -0
- edc_vitals/calculators/bmi.py +70 -0
- edc_vitals/form_validators/__init__.py +5 -0
- edc_vitals/form_validators/blood_pressure_form_validator_mixin.py +40 -0
- edc_vitals/form_validators/bmi_form_validator_mixin.py +19 -0
- edc_vitals/form_validators/weight_height_with_bmi_form_validator_mixin.py +13 -0
- edc_vitals/migrations/__init__.py +0 -0
- edc_vitals/model_mixins/__init__.py +5 -0
- edc_vitals/model_mixins/blood_pressure_model_mixin.py +80 -0
- edc_vitals/model_mixins/weight_height_bmi_model_mixin.py +42 -0
- edc_vitals/models/__init__.py +10 -0
- edc_vitals/models/fields/__init__.py +7 -0
- edc_vitals/models/fields/blood_pressure.py +36 -0
- edc_vitals/models/fields/heart_rate.py +22 -0
- edc_vitals/models/fields/height.py +26 -0
- edc_vitals/models/fields/respiratory_rate.py +22 -0
- edc_vitals/models/fields/temperature.py +26 -0
- edc_vitals/models/fields/waist_circumference.py +23 -0
- edc_vitals/models/fields/weight.py +26 -0
- edc_vitals/utils.py +51 -0
- edc_vitals/validators.py +5 -0
- edc_lab_results/model_mixin_factory/__init__.py +0 -2
- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/licenses/LICENSE +0 -0
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site: Site | None = None,
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|
) -> tuple[GradingData | None, str | None]:
|
|
75
73
|
if subject_identifier:
|
|
76
|
-
rs_obj = RegisteredSubject.objects.get(
|
|
77
|
-
subject_identifier=subject_identifier
|
|
78
|
-
)
|
|
74
|
+
rs_obj = RegisteredSubject.objects.get(subject_identifier=subject_identifier)
|
|
79
75
|
dob = rs_obj.dob
|
|
80
76
|
gender = rs_obj.gender
|
|
81
77
|
grading_data, eval_phrase = get_grade_for_value(
|
|
@@ -104,9 +100,7 @@ class ReferenceRangeCollection(BaseUuidModel):
|
|
|
104
100
|
site: Site | None = None,
|
|
105
101
|
) -> tuple[bool, NormalData]:
|
|
106
102
|
if subject_identifier:
|
|
107
|
-
rs_obj = RegisteredSubject.objects.get(
|
|
108
|
-
subject_identifier=subject_identifier
|
|
109
|
-
)
|
|
103
|
+
rs_obj = RegisteredSubject.objects.get(subject_identifier=subject_identifier)
|
|
110
104
|
dob = rs_obj.dob
|
|
111
105
|
gender = rs_obj.gender
|
|
112
106
|
normal_data = get_normal_data_or_raise(
|
|
@@ -14,9 +14,7 @@ style = color_style()
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
def load_mw():
|
|
17
|
-
model_cls: MolecularWeight = django_apps.get_model(
|
|
18
|
-
"edc_reportable", "MolecularWeight"
|
|
19
|
-
)
|
|
17
|
+
model_cls: MolecularWeight = django_apps.get_model("edc_reportable", "MolecularWeight")
|
|
20
18
|
for label, mw in molecular_weights.items():
|
|
21
19
|
model_cls.objects.get_or_create(label=label, mw=mw)
|
|
22
20
|
|
|
@@ -176,8 +176,7 @@ class ReferenceRangeEvaluator:
|
|
|
176
176
|
if (
|
|
177
177
|
grading_data
|
|
178
178
|
and grading_data.grade
|
|
179
|
-
and str(user_form_response.reportable)
|
|
180
|
-
in [str(g) for g in self.grades(utest_id)]
|
|
179
|
+
and str(user_form_response.reportable) in [str(g) for g in self.grades(utest_id)]
|
|
181
180
|
and str(grading_data.grade) != str(user_form_response.reportable)
|
|
182
181
|
):
|
|
183
182
|
raise forms.ValidationError(
|
|
@@ -196,9 +195,7 @@ class ReferenceRangeEvaluator:
|
|
|
196
195
|
NOT_APPLICABLE,
|
|
197
196
|
]:
|
|
198
197
|
raise forms.ValidationError(
|
|
199
|
-
{
|
|
200
|
-
f"{utest_id}_reportable": "Invalid. Expected 'No' or 'Not applicable'."
|
|
201
|
-
}
|
|
198
|
+
{f"{utest_id}_reportable": "Invalid. Expected 'No' or 'Not applicable'."}
|
|
202
199
|
)
|
|
203
200
|
self._check_normal_range(
|
|
204
201
|
utest_id, value, field, grading_data, user_form_response, opts
|
|
@@ -290,9 +287,7 @@ class ReferenceRangeEvaluator:
|
|
|
290
287
|
)
|
|
291
288
|
answers = [str(v) for v in answers if v is not None]
|
|
292
289
|
if len(answers) == 0:
|
|
293
|
-
raise forms.ValidationError(
|
|
294
|
-
{"results_abnormal": "No results have been entered."}
|
|
295
|
-
)
|
|
290
|
+
raise forms.ValidationError({"results_abnormal": "No results have been entered."})
|
|
296
291
|
answers_as_bool = [True for v in answers if v in responses]
|
|
297
292
|
if self.cleaned_data.get(field) == NO:
|
|
298
293
|
if any(answers_as_bool):
|
|
@@ -302,6 +297,4 @@ class ReferenceRangeEvaluator:
|
|
|
302
297
|
)
|
|
303
298
|
elif self.cleaned_data.get(field) == YES:
|
|
304
299
|
if not any(answers_as_bool):
|
|
305
|
-
raise forms.ValidationError(
|
|
306
|
-
{field: f"None of the above results are {word}"}
|
|
307
|
-
)
|
|
300
|
+
raise forms.ValidationError({field: f"None of the above results are {word}"})
|
|
@@ -41,9 +41,7 @@ def micromoles_per_liter_to(
|
|
|
41
41
|
elif units_to == MILLIGRAMS_PER_DECILITER:
|
|
42
42
|
return {MILLIGRAMS_PER_DECILITER: (float(value) * get_mw(label)) / 10000.00}
|
|
43
43
|
else:
|
|
44
|
-
raise ConversionNotHandled(
|
|
45
|
-
f"Conversion not found. Tried umol/L to {units_to}. "
|
|
46
|
-
)
|
|
44
|
+
raise ConversionNotHandled(f"Conversion not found. Tried umol/L to {units_to}. ")
|
|
47
45
|
|
|
48
46
|
|
|
49
47
|
def milligrams_per_deciliter_to(
|
|
@@ -142,6 +142,8 @@ def get_grading_data_instances(
|
|
|
142
142
|
if qs.count() == 0:
|
|
143
143
|
msg = f"No matching grading data found for {label} {units} {gender}"
|
|
144
144
|
else:
|
|
145
|
-
msg =
|
|
145
|
+
msg = (
|
|
146
|
+
f"No matching grading data found for {label} {units} {gender} given age bounds"
|
|
147
|
+
)
|
|
146
148
|
raise NotEvaluated(f"Value not graded. {msg}")
|
|
147
149
|
return grading_data_objs
|
|
@@ -22,8 +22,8 @@ def get_reference_range_collection(obj) -> ReferenceRangeCollection:
|
|
|
22
22
|
except AttributeError:
|
|
23
23
|
name = obj.panel_object.reference_range_collection_name
|
|
24
24
|
try:
|
|
25
|
-
reference_range_collection = (
|
|
26
|
-
|
|
25
|
+
reference_range_collection = reference_range_colllection_model_cls().objects.get(
|
|
26
|
+
name=name
|
|
27
27
|
)
|
|
28
28
|
except ObjectDoesNotExist:
|
|
29
29
|
pass
|
|
@@ -72,9 +72,7 @@ def load_reference_ranges(
|
|
|
72
72
|
(
|
|
73
73
|
reference_range_collection,
|
|
74
74
|
_,
|
|
75
|
-
) = reference_range_colllection_model_cls().objects.get_or_create(
|
|
76
|
-
name=collection_name
|
|
77
|
-
)
|
|
75
|
+
) = reference_range_colllection_model_cls().objects.get_or_create(name=collection_name)
|
|
78
76
|
reportable_grades = reportable_grades or get_default_reportable_grades()
|
|
79
77
|
for grade in reportable_grades:
|
|
80
78
|
setattr(reference_range_collection, f"grade{grade}", True)
|
|
@@ -35,12 +35,8 @@ def update_grading_data(
|
|
|
35
35
|
).delete()
|
|
36
36
|
for label, formulas in grading_data.items():
|
|
37
37
|
for formula in formulas:
|
|
38
|
-
if get_reportable_grades(
|
|
39
|
-
|
|
40
|
-
):
|
|
41
|
-
formula_opts = {
|
|
42
|
-
k: v for k, v in formula.__dict__.items() if k != "gender"
|
|
43
|
-
}
|
|
38
|
+
if get_reportable_grades(reference_range_collection, label, reportable_grades):
|
|
39
|
+
formula_opts = {k: v for k, v in formula.__dict__.items() if k != "gender"}
|
|
44
40
|
age_opts = {k: v for k, v in formula_opts.items() if "age" in k}
|
|
45
41
|
for gender in formula.__dict__.get("gender"):
|
|
46
42
|
grading_data_model_cls().objects.create(
|
|
@@ -1,12 +1,12 @@
|
|
|
1
1
|
# Generated by Django 3.2.13 on 2022-08-23 23:42
|
|
2
2
|
|
|
3
3
|
import _socket
|
|
4
|
-
from django.db import migrations, models
|
|
5
4
|
import django_audit_fields.fields.hostname_modification_field
|
|
6
5
|
import django_audit_fields.fields.userfield
|
|
7
6
|
import django_audit_fields.fields.uuid_auto_field
|
|
8
7
|
import django_audit_fields.models.audit_model_mixin
|
|
9
8
|
import django_revision.revision_field
|
|
9
|
+
from django.db import migrations, models
|
|
10
10
|
|
|
11
11
|
|
|
12
12
|
class Migration(migrations.Migration):
|
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
# Generated by Django 4.2.4 on 2023-08-23 01:13
|
|
2
2
|
|
|
3
3
|
import _socket
|
|
4
|
-
from django.db import migrations, models
|
|
5
4
|
import django_audit_fields.fields.hostname_modification_field
|
|
5
|
+
from django.db import migrations, models
|
|
6
6
|
|
|
7
7
|
|
|
8
8
|
class Migration(migrations.Migration):
|
|
@@ -14,16 +14,12 @@ class Migration(migrations.Migration):
|
|
|
14
14
|
migrations.AlterField(
|
|
15
15
|
model_name="edcpermissions",
|
|
16
16
|
name="device_created",
|
|
17
|
-
field=models.CharField(
|
|
18
|
-
blank=True, max_length=10, verbose_name="Device created"
|
|
19
|
-
),
|
|
17
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
|
20
18
|
),
|
|
21
19
|
migrations.AlterField(
|
|
22
20
|
model_name="edcpermissions",
|
|
23
21
|
name="device_modified",
|
|
24
|
-
field=models.CharField(
|
|
25
|
-
blank=True, max_length=10, verbose_name="Device modified"
|
|
26
|
-
),
|
|
22
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
|
|
27
23
|
),
|
|
28
24
|
migrations.AlterField(
|
|
29
25
|
model_name="edcpermissions",
|
|
@@ -46,9 +46,7 @@ class SubjectReviewListboardView(
|
|
|
46
46
|
listboard_url = "subject_review_listboard_url"
|
|
47
47
|
listboard_panel_style = "default"
|
|
48
48
|
listboard_panel_title = "Subject Review"
|
|
49
|
-
listboard_view_permission_codename =
|
|
50
|
-
"edc_review_dashboard.view_subject_review_listboard"
|
|
51
|
-
)
|
|
49
|
+
listboard_view_permission_codename = "edc_review_dashboard.view_subject_review_listboard"
|
|
52
50
|
|
|
53
51
|
navbar_selected_item = "subject_review"
|
|
54
52
|
ordering = ["subject_identifier", "visit_code", "visit_code_sequence"]
|
edc_screening/eligibility.py
CHANGED
|
@@ -57,9 +57,7 @@ class Eligibility:
|
|
|
57
57
|
elif k not in ["age", "gender"]:
|
|
58
58
|
self.reasons_ineligible.update({k: k})
|
|
59
59
|
if not self.age_evaluator.eligible(age):
|
|
60
|
-
self.reasons_ineligible.update(
|
|
61
|
-
age=self.age_evaluator.reasons_ineligible
|
|
62
|
-
)
|
|
60
|
+
self.reasons_ineligible.update(age=self.age_evaluator.reasons_ineligible)
|
|
63
61
|
if not self.gender_evaluator.eligible:
|
|
64
62
|
self.reasons_ineligible.update(
|
|
65
63
|
gender=f"{' and '.join(self.gender_evaluator.reasons_ineligible)}."
|
edc_screening/fc.py
CHANGED
|
@@ -1,12 +1,12 @@
|
|
|
1
1
|
# Generated by Django 3.2.13 on 2022-08-25 01:51
|
|
2
2
|
|
|
3
3
|
import _socket
|
|
4
|
-
from django.db import migrations, models
|
|
5
4
|
import django_audit_fields.fields.hostname_modification_field
|
|
6
5
|
import django_audit_fields.fields.userfield
|
|
7
6
|
import django_audit_fields.fields.uuid_auto_field
|
|
8
7
|
import django_audit_fields.models.audit_model_mixin
|
|
9
8
|
import django_revision.revision_field
|
|
9
|
+
from django.db import migrations, models
|
|
10
10
|
|
|
11
11
|
|
|
12
12
|
class Migration(migrations.Migration):
|
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
# Generated by Django 4.2.4 on 2023-08-23 01:13
|
|
2
2
|
|
|
3
3
|
import _socket
|
|
4
|
-
from django.db import migrations, models
|
|
5
4
|
import django_audit_fields.fields.hostname_modification_field
|
|
5
|
+
from django.db import migrations, models
|
|
6
6
|
|
|
7
7
|
|
|
8
8
|
class Migration(migrations.Migration):
|
|
@@ -14,16 +14,12 @@ class Migration(migrations.Migration):
|
|
|
14
14
|
migrations.AlterField(
|
|
15
15
|
model_name="edcpermissions",
|
|
16
16
|
name="device_created",
|
|
17
|
-
field=models.CharField(
|
|
18
|
-
blank=True, max_length=10, verbose_name="Device created"
|
|
19
|
-
),
|
|
17
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
|
20
18
|
),
|
|
21
19
|
migrations.AlterField(
|
|
22
20
|
model_name="edcpermissions",
|
|
23
21
|
name="device_modified",
|
|
24
|
-
field=models.CharField(
|
|
25
|
-
blank=True, max_length=10, verbose_name="Device modified"
|
|
26
|
-
),
|
|
22
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
|
|
27
23
|
),
|
|
28
24
|
migrations.AlterField(
|
|
29
25
|
model_name="edcpermissions",
|
|
@@ -51,9 +51,7 @@ class EligibilityModelMixin(EligibilityFieldsModelMixin, models.Model):
|
|
|
51
51
|
if not self.id:
|
|
52
52
|
self.screening_identifier = self.identifier_cls().identifier
|
|
53
53
|
if self.eligible:
|
|
54
|
-
self.eligibility_datetime = (
|
|
55
|
-
self.get_report_datetime_for_eligibility_datetime()
|
|
56
|
-
)
|
|
54
|
+
self.eligibility_datetime = self.get_report_datetime_for_eligibility_datetime()
|
|
57
55
|
self.real_eligibility_datetime = get_utcnow()
|
|
58
56
|
else:
|
|
59
57
|
self.eligibility_datetime = None
|
|
@@ -54,6 +54,8 @@ class ScreeningFieldsModeMixin(SiteModelMixin, models.Model):
|
|
|
54
54
|
validators=[MinValueValidator(0), MaxValueValidator(110)]
|
|
55
55
|
)
|
|
56
56
|
|
|
57
|
+
ethnicity = models.CharField(max_length=25, null=True, blank=True)
|
|
58
|
+
|
|
57
59
|
consent_ability = models.CharField(
|
|
58
60
|
verbose_name="Participant or legal guardian/representative able and "
|
|
59
61
|
"willing to give informed consent.",
|
|
@@ -34,9 +34,7 @@ class AlreadyConsentedFormMixin:
|
|
|
34
34
|
kwargs={"subject_identifier": self.instance.subject_identifier},
|
|
35
35
|
)
|
|
36
36
|
|
|
37
|
-
def already_consented_validation_message(
|
|
38
|
-
self, cleaned_data: dict | None = None
|
|
39
|
-
) -> str:
|
|
37
|
+
def already_consented_validation_message(self, cleaned_data: dict | None = None) -> str:
|
|
40
38
|
return format_html(
|
|
41
39
|
'Not allowed. Subject has already consented. See subject <A href="{}">{}</A>',
|
|
42
40
|
self.already_consented_validation_url(cleaned_data),
|
edc_search/search_slug.py
CHANGED
|
@@ -20,9 +20,7 @@ if TYPE_CHECKING:
|
|
|
20
20
|
|
|
21
21
|
|
|
22
22
|
class SearchSlug:
|
|
23
|
-
def __init__(
|
|
24
|
-
self, obj: Model | SearchSlugModelMixin = None, fields: list[str] = None
|
|
25
|
-
):
|
|
23
|
+
def __init__(self, obj: Model | SearchSlugModelMixin = None, fields: list[str] = None):
|
|
26
24
|
self.warning = None
|
|
27
25
|
self.slug = ""
|
|
28
26
|
self.model_cls = None
|
|
@@ -49,8 +47,6 @@ class SearchSlug:
|
|
|
49
47
|
from django_crypto_fields.fields import BaseField
|
|
50
48
|
|
|
51
49
|
encrypted_fields = [
|
|
52
|
-
fld.name
|
|
53
|
-
for fld in self.model_cls._meta.fields
|
|
54
|
-
if isinstance(fld, BaseField)
|
|
50
|
+
fld.name for fld in self.model_cls._meta.fields if isinstance(fld, BaseField)
|
|
55
51
|
]
|
|
56
52
|
return [f for f in fields if f not in encrypted_fields]
|
edc_search/updater.py
CHANGED
|
@@ -20,13 +20,10 @@ class SearchSlugDuplicateFields(Exception):
|
|
|
20
20
|
class SearchSlugUpdater:
|
|
21
21
|
search_slug_cls = SearchSlug
|
|
22
22
|
|
|
23
|
-
def __init__(
|
|
24
|
-
self, fields: list[str], model_obj: Model | SearchSlugModelMixin = None
|
|
25
|
-
):
|
|
23
|
+
def __init__(self, fields: list[str], model_obj: Model | SearchSlugModelMixin = None):
|
|
26
24
|
if len(fields) > len(list(set(fields))):
|
|
27
25
|
raise SearchSlugDuplicateFields(
|
|
28
|
-
f"Duplicate search slug fields detected. Got {fields}. "
|
|
29
|
-
f"See {repr(self)}"
|
|
26
|
+
f"Duplicate search slug fields detected. Got {fields}. " f"See {repr(self)}"
|
|
30
27
|
)
|
|
31
28
|
search_slug = self.search_slug_cls(obj=model_obj, fields=fields)
|
|
32
29
|
self.warning = search_slug.warning
|
|
@@ -42,9 +42,7 @@ class SiteModelAdminMixin:
|
|
|
42
42
|
"""
|
|
43
43
|
if self.has_viewallsites_permission(request):
|
|
44
44
|
return [
|
|
45
|
-
s.id
|
|
46
|
-
for s in request.user.userprofile.sites.all()
|
|
47
|
-
if s.id != request.site.id
|
|
45
|
+
s.id for s in request.user.userprofile.sites.all() if s.id != request.site.id
|
|
48
46
|
]
|
|
49
47
|
return sites.get_view_only_site_ids_for_user(request=request)
|
|
50
48
|
|
|
@@ -108,9 +106,7 @@ class SiteModelAdminMixin:
|
|
|
108
106
|
def get_queryset(self, request) -> QuerySet:
|
|
109
107
|
"""Limit modeladmin queryset for the current site only"""
|
|
110
108
|
qs = super().get_queryset(request)
|
|
111
|
-
site_ids = [request.site.id] + self.get_view_only_site_ids_for_user(
|
|
112
|
-
request=request
|
|
113
|
-
)
|
|
109
|
+
site_ids = [request.site.id] + self.get_view_only_site_ids_for_user(request=request)
|
|
114
110
|
try:
|
|
115
111
|
qs = qs.select_related("site").filter(site_id__in=site_ids)
|
|
116
112
|
except FieldError:
|
|
@@ -131,9 +127,7 @@ class SiteModelAdminMixin:
|
|
|
131
127
|
"""Use site id to select languages to show in choices."""
|
|
132
128
|
if db_field.name == self.language_db_field_name:
|
|
133
129
|
try:
|
|
134
|
-
language_choices = sites.get_language_choices_tuple(
|
|
135
|
-
request.site, other=True
|
|
136
|
-
)
|
|
130
|
+
language_choices = sites.get_language_choices_tuple(request.site, other=True)
|
|
137
131
|
except AttributeError as e:
|
|
138
132
|
if "WSGIRequest" not in str(e):
|
|
139
133
|
raise
|
|
@@ -210,9 +204,7 @@ class SiteModelAdminMixin:
|
|
|
210
204
|
orig = []
|
|
211
205
|
for field_list in field_lists:
|
|
212
206
|
orig.extend(field_list or [])
|
|
213
|
-
if dups := [
|
|
214
|
-
item for item, count in collections.Counter(orig).items() if count > 1
|
|
215
|
-
]:
|
|
207
|
+
if dups := [item for item, count in collections.Counter(orig).items() if count > 1]:
|
|
216
208
|
raise SiteModeAdminMixinError(
|
|
217
209
|
f"Related field appears in more than one list. Got {dups}."
|
|
218
210
|
)
|
|
@@ -75,7 +75,5 @@ class Command(BaseCommand):
|
|
|
75
75
|
style.ERROR(f" {single_site.domain}: <not found>. Got {e}\n")
|
|
76
76
|
)
|
|
77
77
|
else:
|
|
78
|
-
sys.stdout.write(
|
|
79
|
-
f" {single_site.domain}: {host} {style.SUCCESS('OK')}\n"
|
|
80
|
-
)
|
|
78
|
+
sys.stdout.write(f" {single_site.domain}: {host} {style.SUCCESS('OK')}\n")
|
|
81
79
|
sys.stdout.write("Done \n")
|
|
@@ -1,12 +1,12 @@
|
|
|
1
1
|
# Generated by Django 4.2.7 on 2023-12-07 01:01
|
|
2
2
|
|
|
3
3
|
import _socket
|
|
4
|
-
from django.db import migrations, models
|
|
5
4
|
import django_audit_fields.fields.hostname_modification_field
|
|
6
5
|
import django_audit_fields.fields.userfield
|
|
7
6
|
import django_audit_fields.fields.uuid_auto_field
|
|
8
7
|
import django_audit_fields.models.audit_model_mixin
|
|
9
8
|
import django_revision.revision_field
|
|
9
|
+
from django.db import migrations, models
|
|
10
10
|
|
|
11
11
|
|
|
12
12
|
class Migration(migrations.Migration):
|
|
@@ -82,9 +82,7 @@ class Migration(migrations.Migration):
|
|
|
82
82
|
),
|
|
83
83
|
(
|
|
84
84
|
"device_created",
|
|
85
|
-
models.CharField(
|
|
86
|
-
blank=True, max_length=10, verbose_name="Device created"
|
|
87
|
-
),
|
|
85
|
+
models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
|
88
86
|
),
|
|
89
87
|
(
|
|
90
88
|
"device_modified",
|
|
@@ -8,9 +8,7 @@ class SiteLanguagesError(Exception):
|
|
|
8
8
|
def get_languages(language_codes: list[str], site_id: int) -> dict[str, str]:
|
|
9
9
|
defined_languages = get_languages_from_settings()
|
|
10
10
|
if language_codes:
|
|
11
|
-
if unknown_language_codes := [
|
|
12
|
-
c for c in language_codes if c not in defined_languages
|
|
13
|
-
]:
|
|
11
|
+
if unknown_language_codes := [c for c in language_codes if c not in defined_languages]:
|
|
14
12
|
raise SiteLanguagesError(
|
|
15
13
|
"Unknown language code(s) associated with site. Language code must be "
|
|
16
14
|
"defined in settings.LANGUAGES. "
|
edc_sites/site.py
CHANGED
|
@@ -160,9 +160,7 @@ class Sites:
|
|
|
160
160
|
single_site = dataclasses.replace(single_site, domain=domain)
|
|
161
161
|
|
|
162
162
|
if single_site.site_id in self._registry:
|
|
163
|
-
raise AlreadyRegistered(
|
|
164
|
-
f"Site already registered. Got `{single_site}`."
|
|
165
|
-
)
|
|
163
|
+
raise AlreadyRegistered(f"Site already registered. Got `{single_site}`.")
|
|
166
164
|
elif single_site.name in [s.name for s in self._registry.values()]:
|
|
167
165
|
raise AlreadyRegisteredName(
|
|
168
166
|
f"Site with this name is already registered. Got `{single_site}`."
|
|
@@ -200,9 +198,7 @@ class Sites:
|
|
|
200
198
|
return single_site
|
|
201
199
|
raise SiteDoesNotExist(f"No site exists with `{attrname}`==`{value}`.")
|
|
202
200
|
|
|
203
|
-
def all(
|
|
204
|
-
self, aslist: bool | None = None
|
|
205
|
-
) -> dict[int, SingleSite] | list[SingleSite]:
|
|
201
|
+
def all(self, aslist: bool | None = None) -> dict[int, SingleSite] | list[SingleSite]:
|
|
206
202
|
if aslist:
|
|
207
203
|
return list(self._registry.values())
|
|
208
204
|
return self._registry
|
|
@@ -210,8 +206,7 @@ class Sites:
|
|
|
210
206
|
@property
|
|
211
207
|
def countries(self) -> list[str]:
|
|
212
208
|
return (
|
|
213
|
-
list(set([single_site.country for single_site in self._registry.values()]))
|
|
214
|
-
or []
|
|
209
|
+
list(set([single_site.country for single_site in self._registry.values()])) or []
|
|
215
210
|
)
|
|
216
211
|
|
|
217
212
|
def get_by_country(
|
|
@@ -276,9 +271,7 @@ class Sites:
|
|
|
276
271
|
get_message_text(messages.ERROR),
|
|
277
272
|
)
|
|
278
273
|
else:
|
|
279
|
-
site_ids = [
|
|
280
|
-
s.id for s in user.userprofile.sites.all() if s.id != site_id
|
|
281
|
-
]
|
|
274
|
+
site_ids = [s.id for s in user.userprofile.sites.all() if s.id != site_id]
|
|
282
275
|
if request:
|
|
283
276
|
add_to_messages_once(
|
|
284
277
|
request, messages.WARNING, get_message_text(messages.WARNING)
|
edc_sites/system_checks.py
CHANGED
|
@@ -40,10 +40,7 @@ def compare_single_sites_with_db():
|
|
|
40
40
|
if not get_site_model_cls().objects.all().exists():
|
|
41
41
|
raise SitesCheckError("No sites have been imported. You need to run migrate")
|
|
42
42
|
ids1 = sorted(list(site_sites.all()))
|
|
43
|
-
ids2 = [
|
|
44
|
-
x[0]
|
|
45
|
-
for x in get_site_model_cls().objects.values_list("id").all().order_by("id")
|
|
46
|
-
]
|
|
43
|
+
ids2 = [x[0] for x in get_site_model_cls().objects.values_list("id").all().order_by("id")]
|
|
47
44
|
if ids1 != ids2:
|
|
48
45
|
raise SitesCheckError(
|
|
49
46
|
f"Site table is out of sync. Got registered sites = {ids1}. "
|
|
@@ -57,9 +57,7 @@ def add_or_update_django_sites(
|
|
|
57
57
|
if single_site.name == "edc_sites.sites":
|
|
58
58
|
continue
|
|
59
59
|
if verbose:
|
|
60
|
-
sys.stdout.write(
|
|
61
|
-
f" * SingleSite: {single_site.site_id}: {single_site.domain}.\n"
|
|
62
|
-
)
|
|
60
|
+
sys.stdout.write(f" * SingleSite: {single_site.site_id}: {single_site.domain}.\n")
|
|
63
61
|
site_obj = get_or_create_site_obj(single_site, apps)
|
|
64
62
|
if verbose:
|
|
65
63
|
sys.stdout.write(f" - Site model: {site_obj.id}: {site_obj.domain}.\n")
|
|
@@ -1,12 +1,12 @@
|
|
|
1
1
|
# Generated by Django 3.2.13 on 2022-08-25 01:51
|
|
2
2
|
|
|
3
3
|
import _socket
|
|
4
|
-
from django.db import migrations, models
|
|
5
4
|
import django_audit_fields.fields.hostname_modification_field
|
|
6
5
|
import django_audit_fields.fields.userfield
|
|
7
6
|
import django_audit_fields.fields.uuid_auto_field
|
|
8
7
|
import django_audit_fields.models.audit_model_mixin
|
|
9
8
|
import django_revision.revision_field
|
|
9
|
+
from django.db import migrations, models
|
|
10
10
|
|
|
11
11
|
|
|
12
12
|
class Migration(migrations.Migration):
|
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
# Generated by Django 4.2.4 on 2023-08-23 01:13
|
|
2
2
|
|
|
3
3
|
import _socket
|
|
4
|
-
from django.db import migrations, models
|
|
5
4
|
import django_audit_fields.fields.hostname_modification_field
|
|
5
|
+
from django.db import migrations, models
|
|
6
6
|
|
|
7
7
|
|
|
8
8
|
class Migration(migrations.Migration):
|
|
@@ -14,16 +14,12 @@ class Migration(migrations.Migration):
|
|
|
14
14
|
migrations.AlterField(
|
|
15
15
|
model_name="edcpermissions",
|
|
16
16
|
name="device_created",
|
|
17
|
-
field=models.CharField(
|
|
18
|
-
blank=True, max_length=10, verbose_name="Device created"
|
|
19
|
-
),
|
|
17
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
|
20
18
|
),
|
|
21
19
|
migrations.AlterField(
|
|
22
20
|
model_name="edcpermissions",
|
|
23
21
|
name="device_modified",
|
|
24
|
-
field=models.CharField(
|
|
25
|
-
blank=True, max_length=10, verbose_name="Device modified"
|
|
26
|
-
),
|
|
22
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
|
|
27
23
|
),
|
|
28
24
|
migrations.AlterField(
|
|
29
25
|
model_name="edcpermissions",
|