clinicedc 2.0.1__py3-none-any.whl → 2.0.2__py3-none-any.whl
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- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/METADATA +15 -22
- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/RECORD +854 -787
- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/WHEEL +1 -1
- edc_action_item/action.py +10 -30
- edc_action_item/action_with_notification.py +1 -2
- edc_action_item/admin/action_item_admin.py +2 -6
- edc_action_item/admin_site.py +1 -3
- edc_action_item/auths.py +1 -3
- edc_action_item/create_or_update_action_type.py +1 -3
- edc_action_item/data_fixers.py +6 -20
- edc_action_item/forms/action_item_form.py +1 -3
- edc_action_item/management/commands/inspect_action_items.py +3 -9
- edc_action_item/migrations/0001_initial.py +4 -5
- edc_action_item/migrations/0003_auto_20180116_1528.py +2 -1
- edc_action_item/migrations/0006_auto_20180707_1659.py +3 -4
- edc_action_item/migrations/0007_auto_20180707_1715.py +1 -3
- edc_action_item/migrations/0008_auto_20180809_0303.py +2 -1
- edc_action_item/migrations/0014_auto_20181121_1738.py +2 -6
- edc_action_item/migrations/0015_auto_20190114_0250.py +4 -3
- edc_action_item/migrations/0021_auto_20190628_2113.py +1 -3
- edc_action_item/migrations/0022_auto_20190628_2136.py +2 -6
- edc_action_item/migrations/0030_edcpermissions.py +1 -1
- edc_action_item/migrations/0033_alter_actionitem_managers.py +1 -0
- edc_action_item/migrations/0034_alter_actionitem_device_created_and_more.py +13 -37
- edc_action_item/models/action_item.py +2 -6
- edc_action_item/models/action_model_mixin.py +5 -16
- edc_action_item/models/action_type.py +1 -3
- edc_action_item/models/reference.py +1 -2
- edc_action_item/models/signals.py +3 -9
- edc_action_item/site_action_items.py +5 -15
- edc_action_item/templatetags/action_item_extras.py +1 -3
- edc_action_item/view_utils/action_item_button.py +1 -3
- edc_action_item/view_utils/action_item_popover_list_item.py +1 -2
- edc_adherence/migrations/0002_nonadherencereasons_plural_name.py +1 -3
- edc_adherence/model_admin_mixin.py +1 -3
- edc_adverse_event/action_items/ae_followup_action.py +2 -6
- edc_adverse_event/action_items/ae_initial_action.py +3 -7
- edc_adverse_event/auth_objects.py +2 -6
- edc_adverse_event/constants.py +1 -3
- edc_adverse_event/form_validator_mixins/death_report_form_validator.py +1 -3
- edc_adverse_event/form_validator_mixins/requires_death_report_form_validator_mixin.py +2 -7
- edc_adverse_event/form_validators/hospitalization.py +1 -3
- edc_adverse_event/migrations/0003_auto_20191026_2231.py +3 -9
- edc_adverse_event/migrations/0008_auto_20220825_0451.py +1 -1
- edc_adverse_event/migrations/0009_auto_20220907_0157.py +1 -1
- edc_adverse_event/migrations/0010_auto_20220913_2139.py +4 -12
- edc_adverse_event/migrations/0013_alter_aeactionclassification_device_created_and_more.py +11 -31
- edc_adverse_event/model_mixins/ae_followup/ae_followup_fields_model_mixin.py +1 -3
- edc_adverse_event/model_mixins/ae_followup/ae_followup_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/ae_initial/ae_initial_ae_model_mixin.py +1 -3
- edc_adverse_event/model_mixins/ae_initial/ae_initial_fields_model_mixin.py +1 -3
- edc_adverse_event/model_mixins/ae_initial/ae_initial_susar_model_mixin.py +1 -2
- edc_adverse_event/model_mixins/ae_special_interest/aesi_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/ae_susar/ae_susar_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/ae_tmg/ae_tmg_fields_model_mixin.py +2 -6
- edc_adverse_event/model_mixins/ae_tmg/ae_tmg_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/death_report/death_report_extra_fields_model_mixin.py +1 -2
- edc_adverse_event/model_mixins/death_report/death_report_model_mixin.py +2 -5
- edc_adverse_event/model_mixins/death_report/death_report_tmg_model_mixin.py +2 -7
- edc_adverse_event/model_mixins/death_report/simple_death_report_model_mixin.py +1 -3
- edc_adverse_event/modeladmin_mixins/ae_tmg_admin_mixin.py +1 -3
- edc_adverse_event/modeladmin_mixins/death_report_admin_mixin.py +6 -10
- edc_adverse_event/modelform_mixins/ae_tmg_modelform_mixin.py +1 -3
- edc_adverse_event/models/signals.py +3 -9
- edc_adverse_event/pdf_reports/ae_pdf_report.py +6 -18
- edc_adverse_event/pdf_reports/death_pdf_report.py +3 -9
- edc_adverse_event/templatetags/edc_adverse_event_extras.py +5 -15
- edc_adverse_event/utils.py +2 -6
- edc_adverse_event/view_mixins/ae/ae_listboard_view_mixin.py +1 -3
- edc_adverse_event/view_mixins/ae/death_report_listboard_view_mixin.py +1 -3
- edc_adverse_event/view_mixins/tmg/tmg_ae_listboard_view_mixin.py +2 -6
- edc_adverse_event/view_utils/tmg_button.py +2 -6
- edc_adverse_event/views/home_view.py +1 -3
- edc_adverse_event/views/tmg/death_listboard_view.py +1 -3
- edc_adverse_event/views/tmg/home_view.py +2 -6
- edc_adverse_event/views/tmg/summary_listboard_view.py +1 -3
- edc_appointment/admin/appointment_admin.py +1 -3
- edc_appointment/admin/list_filters.py +1 -3
- edc_appointment/admin_site.py +1 -3
- edc_appointment/analytics/dataframes/get_appointment_df.py +2 -6
- edc_appointment/appointment_reason_updater.py +2 -5
- edc_appointment/appointment_status_updater.py +1 -4
- edc_appointment/constants.py +1 -3
- edc_appointment/creators/appointment_creator.py +4 -10
- edc_appointment/creators/unscheduled_appointment_creator.py +3 -7
- edc_appointment/creators/utils.py +4 -0
- edc_appointment/form_validator_mixins/next_appointment_crf_form_validator_mixin.py +3 -10
- edc_appointment/form_validator_mixins/window_period_form_validator_mixin.py +3 -9
- edc_appointment/form_validators/appointment_form_validator.py +11 -37
- edc_appointment/form_validators/next_appointment_crf_form_validator.py +1 -3
- edc_appointment/form_validators/utils.py +1 -3
- edc_appointment/managers.py +2 -6
- edc_appointment/migrations/0002_auto_20161126_1156.py +5 -8
- edc_appointment/migrations/0003_auto_20161127_2226.py +7 -16
- edc_appointment/migrations/0006_auto_20170106_2118.py +2 -1
- edc_appointment/migrations/0008_auto_20171115_1601.py +3 -4
- edc_appointment/migrations/0014_auto_20180116_1411.py +2 -1
- edc_appointment/migrations/0024_auto_20200911_0425.py +1 -1
- edc_appointment/migrations/0034_appointmenttype_alter_appointment_appt_type_and_more.py +2 -4
- edc_appointment/migrations/0036_auto_20230124_1822.py +2 -6
- edc_appointment/migrations/0040_appointment_appt_type_other_and_more.py +1 -0
- edc_appointment/migrations/0042_alter_appointment_device_created_and_more.py +5 -13
- edc_appointment/migrations/0046_infosources.py +1 -3
- edc_appointment/migrations/0047_alter_appointment_options_and_more.py +1 -3
- edc_appointment/model_mixins/appointment_methods_model_mixin.py +1 -5
- edc_appointment/model_mixins/appointment_model_mixin.py +2 -8
- edc_appointment/model_mixins/next_appointment_crf_model_mixin.py +1 -3
- edc_appointment/modeladmin_mixins/next_appointment_crf_modeladmin_mixin.py +1 -3
- edc_appointment/modelform_mixins/next_appointment_crf_modelform_mixins.py +1 -5
- edc_appointment/models/signals.py +5 -17
- edc_appointment/utils.py +11 -33
- edc_appointment/view_mixins/appointment_view_mixin.py +2 -6
- edc_auth/admin/list_filters.py +2 -6
- edc_auth/admin/role_admin.py +1 -3
- edc_auth/admin/user_admin.py +4 -12
- edc_auth/admin/user_profile_admin.py +2 -5
- edc_auth/auth_updater/auth_updater.py +1 -3
- edc_auth/auth_updater/group_updater.py +3 -9
- edc_auth/forms.py +1 -3
- edc_auth/get_app_codenames.py +1 -3
- edc_auth/import_users.py +3 -9
- edc_auth/management/commands/export_users.py +1 -3
- edc_auth/management/commands/reset_password.py +1 -3
- edc_auth/migrations/0001_squashed_0033_alter_userprofile_is_multisite_viewer.py +4 -12
- edc_auth/migrations/0015_auto_20191026_2149.py +1 -3
- edc_auth/migrations/0016_auto_20191026_2153.py +1 -3
- edc_auth/migrations/0025_permissions.py +1 -1
- edc_auth/migrations/0029_alter_edcpermissions_device_created_and_more.py +5 -13
- edc_auth/models/__init__.py +1 -3
- edc_auth/models/signals.py +2 -6
- edc_auth/models/user_profile.py +1 -3
- edc_auth/password_setter.py +1 -3
- edc_auth/system_checks.py +1 -5
- edc_auth/urls_for_accounts.py +1 -3
- edc_auth/utils.py +3 -9
- edc_consent/actions.py +3 -9
- edc_consent/consent_definition.py +2 -6
- edc_consent/consent_definition_extension.py +4 -12
- edc_consent/field_mixins/citizen_fields_mixin.py +2 -4
- edc_consent/field_mixins/identity_fields_mixin.py +1 -2
- edc_consent/field_mixins/personal_fields_mixin.py +8 -3
- edc_consent/field_mixins/site_fields_mixin.py +1 -2
- edc_consent/form_validators/subject_consent_form_validator.py +2 -7
- edc_consent/migrations/0001_initial.py +1 -1
- edc_consent/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_consent/model_mixins/consent_extension_model_mixin.py +1 -3
- edc_consent/model_mixins/consent_model_mixin.py +3 -9
- edc_consent/modeladmin_mixins/consent_model_admin_mixin.py +7 -17
- edc_consent/modelform_mixins/consent_modelform_mixin/consent_modelform_validation_mixin.py +3 -8
- edc_consent/modelform_mixins/requires_consent_modelform_mixin.py +1 -3
- edc_consent/models/signals.py +2 -6
- edc_consent/site_consents.py +5 -17
- edc_consent/system_checks.py +3 -9
- edc_consent/validators.py +1 -2
- edc_consent/view_mixins/consent_view_mixins.py +3 -5
- edc_crf/crf_form_validator.py +2 -6
- edc_crf/crf_form_validator_mixins.py +2 -6
- edc_crf/migrations/0004_alter_crfstatus_device_created_and_more.py +3 -7
- edc_crf/utils.py +1 -3
- edc_dashboard/management/commands/update_search_slugs.py +1 -3
- edc_dashboard/migrations/0001_initial.py +1 -1
- edc_dashboard/migrations/0003_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_dashboard/templatetags/edc_dashboard_extras.py +2 -6
- edc_dashboard/view_mixins/administration_view_mixin.py +1 -3
- edc_dashboard/view_mixins/edc_view_mixin.py +1 -3
- edc_dashboard/views/administration_view.py +1 -3
- edc_data_manager/action_items.py +1 -3
- edc_data_manager/admin/actions.py +3 -9
- edc_data_manager/admin/data_query_admin.py +4 -12
- edc_data_manager/admin/query_rule_admin.py +4 -13
- edc_data_manager/auths.py +1 -3
- edc_data_manager/forms/data_query.py +2 -6
- edc_data_manager/forms/query_rule.py +1 -3
- edc_data_manager/get_longitudinal_value.py +2 -5
- edc_data_manager/handlers/handlers.py +2 -6
- edc_data_manager/migrations/0001_initial.py +4 -3
- edc_data_manager/migrations/0003_auto_20190806_1749.py +2 -6
- edc_data_manager/migrations/0004_auto_20190806_1750.py +1 -3
- edc_data_manager/migrations/0025_edcpermissions.py +1 -1
- edc_data_manager/migrations/0027_alter_dataquery_dm_user.py +1 -1
- edc_data_manager/migrations/0028_alter_dataquery_options_alter_queryrule_options_and_more.py +2 -1
- edc_data_manager/migrations/0029_alter_dataquery_managers.py +2 -1
- edc_data_manager/migrations/0030_alter_datadictionary_device_created_and_more.py +15 -43
- edc_data_manager/models/model_mixins.py +1 -3
- edc_data_manager/populate_data_dictionary.py +1 -2
- edc_data_manager/post_migrate_signals.py +1 -3
- edc_data_manager/site_data_manager.py +1 -3
- edc_document_status/model_mixins.py +1 -3
- edc_egfr/__init__.py +1 -0
- edc_egfr/admin/__init__.py +1 -0
- edc_egfr/admin/egfr_drop_notification_admin_mixin.py +73 -0
- edc_egfr/apps.py +5 -0
- edc_egfr/calculators/__init__.py +4 -0
- edc_egfr/calculators/base_egrfr.py +56 -0
- edc_egfr/calculators/egfr_ckd_epi.py +68 -0
- edc_egfr/calculators/egfr_cockcroft_gault.py +63 -0
- edc_egfr/calculators/percent_change.py +7 -0
- edc_egfr/constants.py +1 -0
- edc_egfr/egfr.py +237 -0
- edc_egfr/form_validator_mixins/__init__.py +4 -0
- edc_egfr/form_validator_mixins/egfr_form_validator_mixins.py +55 -0
- edc_egfr/get_drop_notification_model.py +10 -0
- edc_egfr/get_egfr_for_subject.py +31 -0
- edc_egfr/model_mixins/__init__.py +2 -0
- edc_egfr/model_mixins/egfr_drop_notification_model_mixin.py +63 -0
- edc_egfr/model_mixins/egfr_model_mixin.py +120 -0
- edc_export/archive_exporter.py +2 -6
- edc_export/exportables.py +2 -6
- edc_export/files_emailer.py +1 -3
- edc_export/management/commands/import_receipts.py +1 -3
- edc_export/managers.py +3 -9
- edc_export/migrations/0001_initial.py +15 -36
- edc_export/migrations/0005_exportdata_importdata.py +1 -3
- edc_export/migrations/0006_auto_20200512_0208.py +2 -6
- edc_export/migrations/0010_auto_20210910_1636.py +2 -6
- edc_export/migrations/0013_edcpermissions.py +1 -1
- edc_export/migrations/0015_alter_datarequest_managers_and_more.py +2 -1
- edc_export/migrations/0016_alter_datarequest_device_created_and_more.py +27 -79
- edc_export/migrations/0017_alter_datarequest_options_and_more.py +2 -6
- edc_export/migrations/0020_remove_datarequesthistory_edc_export__exporte_ba8050_idx_and_more.py +2 -6
- edc_export/model_exporter/model_exporter.py +4 -15
- edc_export/model_exporter/object_history_helpers.py +1 -3
- edc_export/model_exporter/value_getter.py +5 -14
- edc_export/models/signals.py +1 -3
- edc_export/models/upload_export_receipt_file.py +1 -3
- edc_export/utils.py +1 -4
- edc_export/views/export_selected_models_view.py +6 -17
- edc_facility/default_definitions.py +1 -3
- edc_facility/facility.py +4 -14
- edc_facility/import_holidays.py +1 -3
- edc_facility/migrations/0005_healthfacility_healthfacilitytypes_and_more.py +4 -6
- edc_facility/migrations/0006_alter_healthfacility_health_facility_type.py +1 -1
- edc_facility/migrations/0008_alter_healthfacility_device_created_and_more.py +5 -13
- edc_facility/models/holiday.py +1 -3
- edc_facility/utils.py +1 -3
- edc_fieldsets/fieldsets_modeladmin_mixin.py +1 -3
- edc_form_describer/form_describer.py +3 -9
- edc_form_describer/make_forms_reference.py +1 -3
- edc_form_describer/management/commands/make_forms_reference.py +1 -3
- edc_form_runners/admin/issue_admin.py +2 -6
- edc_form_runners/form_runner.py +4 -13
- edc_form_runners/form_runner_by_scr_id.py +1 -3
- edc_form_runners/get_form_runner.py +1 -3
- edc_form_runners/get_form_runner_by_src_id.py +3 -3
- edc_form_runners/management/commands/run_form_runners.py +1 -3
- edc_form_runners/migrations/0001_initial.py +2 -4
- edc_form_runners/run_form_runners.py +1 -3
- edc_form_runners/utils.py +1 -3
- edc_form_validators/applicable_field_validator.py +6 -17
- edc_form_validators/base_form_validator.py +1 -3
- edc_form_validators/date_range_validator.py +4 -12
- edc_form_validators/date_validator.py +3 -9
- edc_form_validators/many_to_many_field_validator.py +1 -3
- edc_form_validators/other_specify_field_validator.py +3 -7
- edc_form_validators/range_field_validator.py +1 -3
- edc_form_validators/required_field_validator.py +5 -18
- edc_glucose/__init__.py +0 -0
- edc_glucose/apps.py +6 -0
- edc_glucose/constants.py +3 -0
- edc_glucose/fieldsets.py +14 -0
- edc_glucose/form_validators/__init__.py +6 -0
- edc_glucose/form_validators/fasting_form_validator.py +12 -0
- edc_glucose/form_validators/fbg_form_validator_mixin.py +32 -0
- edc_glucose/form_validators/fbg_ogtt_form_validator_mixin.py +47 -0
- edc_glucose/form_validators/glucose_form_validator.py +44 -0
- edc_glucose/form_validators/glucose_form_validator_mixin.py +53 -0
- edc_glucose/form_validators/ogtt_form_validator_mixin.py +91 -0
- edc_glucose/list_filters.py +42 -0
- edc_glucose/migrations/__init__.py +0 -0
- edc_glucose/model_mixin_factories/__init__.py +4 -0
- edc_glucose/model_mixin_factories/fasting_model_mixin_factory.py +63 -0
- edc_glucose/model_mixin_factories/fbg_model_mixin_factory.py +48 -0
- edc_glucose/model_mixin_factories/glucose_model_mixin_factory.py +49 -0
- edc_glucose/model_mixin_factories/ogtt_model_mixin_factory.py +71 -0
- edc_glucose/model_mixins/__init__.py +5 -0
- edc_glucose/model_mixins/fasting_model_mixin.py +15 -0
- edc_glucose/model_mixins/fbg_model_mixin.py +10 -0
- edc_glucose/model_mixins/glucose_model_mixin.py +17 -0
- edc_glucose/model_mixins/hba1c_model_mixin.py +42 -0
- edc_glucose/model_mixins/ogtt_model_mixin.py +10 -0
- edc_glucose/models.py +0 -0
- edc_glucose/utils.py +42 -0
- edc_identifier/admin_site.py +1 -3
- edc_identifier/identifier.py +1 -3
- edc_identifier/migrations/0001_initial.py +3 -4
- edc_identifier/migrations/0001_squashed_0018_auto_20180128_1054.py +3 -2
- edc_identifier/migrations/0005_alter_identifiermodel_managers.py +2 -1
- edc_identifier/migrations/0005_historicalidentifierhistory_historicalidentifiertracker_historicalsubjectidentifier.py +4 -5
- edc_identifier/migrations/0006_auto_20161127_2226.py +16 -43
- edc_identifier/migrations/0007_alter_identifiermodel_device_created_and_more.py +3 -7
- edc_identifier/migrations/0007_auto_20161204_2227.py +4 -7
- edc_identifier/migrations/0009_auto_20161221_2323.py +1 -0
- edc_identifier/migrations/0010_auto_20170112_0602.py +2 -1
- edc_identifier/migrations/0012_auto_20171116_1606.py +2 -1
- edc_identifier/migrations/0013_auto_20171230_1316.py +3 -9
- edc_identifier/research_identifier.py +3 -11
- edc_identifier/short_identifier.py +5 -9
- edc_identifier/utils.py +1 -3
- edc_lab/admin/modeladmin_mixins.py +2 -8
- edc_lab/aliquot_types.py +1 -3
- edc_lab/form_validators/requisition_form_validator_mixin.py +1 -3
- edc_lab/forms/box_type_form.py +4 -6
- edc_lab/lab/aliquot_type.py +2 -6
- edc_lab/lab/manifest.py +2 -6
- edc_lab/lab/primary_aliquot.py +1 -3
- edc_lab/lab/requisition_panel.py +1 -3
- edc_lab/lab/requisition_panel_group.py +2 -6
- edc_lab/lab/specimen.py +1 -3
- edc_lab/labels/aliquot_label.py +4 -6
- edc_lab/labels/manifest_label.py +1 -3
- edc_lab/migrations/0001_initial.py +12 -29
- edc_lab/migrations/0002_auto_20170305_1939.py +4 -12
- edc_lab/migrations/0007_auto_20170321_1119.py +2 -6
- edc_lab/migrations/0008_auto_20170921_0719.py +2 -1
- edc_lab/migrations/0010_auto_20171127_1541.py +3 -2
- edc_lab/migrations/0012_auto_20180114_1438.py +2 -1
- edc_lab/migrations/0013_auto_20180117_1438.py +2 -1
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- edc_pharmacy/views/print_labels_view.py +1 -3
- edc_pharmacy/views/print_stock_transfer_manifest_view.py +1 -3
- edc_pharmacy/views/transfer_stock_view.py +1 -3
- edc_prn/modelform_mixins.py +1 -3
- edc_prn/prn.py +2 -6
- edc_prn/templatetags/edc_prn_extras.py +4 -8
- edc_protocol/research_protocol_config.py +2 -5
- edc_protocol_incident/admin/protocol_deviation_violation_admin.py +1 -3
- edc_protocol_incident/auth_objects.py +1 -3
- edc_protocol_incident/auths.py +1 -3
- edc_protocol_incident/form_validators/mixins.py +3 -9
- edc_protocol_incident/form_validators/protocol_deviation_violation_form_validator.py +6 -18
- edc_protocol_incident/form_validators/protocol_incident_form_validator.py +3 -8
- edc_protocol_incident/migrations/0001_initial.py +4 -3
- edc_protocol_incident/migrations/0001_squashed_0015_auto_20220927_0401.py +7 -12
- edc_protocol_incident/migrations/0005_protocolincident_historicalprotocolincident_and_more.py +4 -3
- edc_protocol_incident/migrations/0012_auto_20220913_2139.py +3 -9
- edc_protocol_incident/migrations/0020_alter_historicalprotocoldeviationviolation_device_created_and_more.py +9 -25
- edc_protocol_incident/model_mixins/protocol_deviation_violation_model_mixin.py +3 -7
- edc_protocol_incident/model_mixins/protocol_incident_model_mixin.py +1 -3
- edc_protocol_incident/urls.py +1 -3
- edc_pylabels/actions.py +2 -6
- edc_pylabels/admin/label_configuration_admin.py +4 -4
- edc_pylabels/drawing_callable_example.py +1 -3
- edc_pylabels/migrations/0001_initial.py +1 -3
- edc_pylabels/migrations/0002_alter_label_options_label_created_and_more.py +2 -6
- edc_pylabels/migrations/0005_labelconfiguration_delete_label_and_more.py +1 -3
- edc_pylabels/models/label_configuration.py +1 -3
- edc_qareports/migrations/0001_initial.py +3 -4
- edc_qareports/migrations/0005_edcpermissions.py +2 -4
- edc_qareports/migrations/0006_qareportlog.py +2 -1
- edc_qareports/migrations/0007_qareportlog_edc_qarepor_accesse_738ffe_idx.py +1 -3
- edc_qareports/migrations/0017_auto_20240816_0256.py +1 -0
- edc_qareports/model_mixins/note_model_mixin.py +1 -3
- edc_qareports/modeladmin_mixins/list_filters.py +8 -12
- edc_qareports/modeladmin_mixins/note_modeladmin_mixin.py +1 -3
- edc_qareports/modeladmin_mixins/on_study_missing_values_modeladmin_mixin.py +2 -6
- edc_qareports/modeladmin_mixins/qa_report_modeladmin_mixin.py +1 -3
- edc_qareports/sql_generator/crf_case.py +1 -5
- edc_qareports/sql_generator/sql_view_generator.py +1 -3
- edc_qareports/utils.py +2 -6
- edc_randomization/admin.py +1 -3
- edc_randomization/auths.py +2 -6
- edc_randomization/blinding.py +1 -3
- edc_randomization/migrations/0001_initial.py +3 -4
- edc_randomization/migrations/0009_edcpermissions.py +1 -1
- edc_randomization/migrations/0011_alter_edcpermissions_device_created_and_more.py +7 -19
- edc_randomization/model_mixins.py +2 -5
- edc_randomization/randomization_list_importer.py +3 -7
- edc_randomization/randomization_list_verifier.py +2 -7
- edc_randomization/randomizer.py +2 -6
- edc_randomization/site_randomizers.py +1 -3
- edc_randomization/system_checks.py +1 -3
- edc_randomization/utils.py +2 -6
- edc_refusal/admin.py +1 -3
- edc_refusal/forms.py +1 -2
- edc_refusal/migrations/0001_initial.py +2 -1
- edc_refusal/migrations/0002_historicalsubjectrefusal.py +6 -4
- edc_refusal/migrations/0004_refusalreasons_plural_name.py +1 -3
- edc_refusal/migrations/0005_alter_subjectrefusal_options_and_more.py +2 -1
- edc_refusal/migrations/0006_alter_subjectrefusal_managers.py +2 -1
- edc_refusal/migrations/0008_alter_historicalsubjectrefusal_device_created_and_more.py +5 -13
- edc_registration/admin_site.py +1 -3
- edc_registration/migrations/0001_initial.py +3 -4
- edc_registration/migrations/0002_auto_20161127_2226.py +4 -7
- edc_registration/migrations/0004_auto_20161221_0018.py +2 -1
- edc_registration/migrations/0005_auto_20170111_1809.py +2 -1
- edc_registration/migrations/0008_auto_20170810_1032.py +2 -1
- edc_registration/migrations/0012_auto_20180116_1528.py +2 -1
- edc_registration/migrations/0015_auto_20181006_2257.py +1 -1
- edc_registration/migrations/0016_historicalregisteredsubject.py +5 -6
- edc_registration/migrations/0026_historicalregisteredsubject_familiar_name_and_more.py +1 -1
- edc_registration/migrations/0028_alter_registeredsubject_managers.py +1 -1
- edc_registration/migrations/0029_alter_historicalregisteredsubject_device_created_and_more.py +5 -13
- edc_registration/modeladmin_mixins.py +1 -3
- edc_registration/models/registered_subject.py +4 -11
- edc_registration/utils.py +1 -3
- edc_reportable/admin_site.py +1 -3
- edc_reportable/data/normal_data/africa.py +4 -14
- edc_reportable/evaluator.py +2 -6
- edc_reportable/formula.py +2 -6
- edc_reportable/management/commands/export_reportables.py +1 -3
- edc_reportable/migrations/0001_initial.py +3 -9
- edc_reportable/migrations/0003_referencerangecollection_grade1_and_more.py +3 -9
- edc_reportable/migrations/0004_alter_referencerangecollection_grade3_and_more.py +4 -7
- edc_reportable/migrations/0006_alter_gradingdata_revision_and_more.py +8 -19
- edc_reportable/models/mw.py +1 -3
- edc_reportable/models/reference_model_mixins.py +1 -3
- edc_reportable/models/reference_range_collection.py +3 -9
- edc_reportable/post_migrate_signals.py +1 -3
- edc_reportable/reference_range_evaluator.py +4 -11
- edc_reportable/utils/convert_units.py +1 -3
- edc_reportable/utils/get_grade_for_value.py +3 -1
- edc_reportable/utils/get_reference_range_collection.py +2 -2
- edc_reportable/utils/load_data.py +1 -3
- edc_reportable/utils/update_grading_data.py +2 -6
- edc_review_dashboard/migrations/0001_initial.py +1 -1
- edc_review_dashboard/migrations/0003_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_review_dashboard/views/subject_review_listboard_view.py +1 -3
- edc_screening/eligibility.py +1 -3
- edc_screening/fc.py +1 -3
- edc_screening/migrations/0001_initial.py +1 -1
- edc_screening/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_screening/model_mixins/eligibility_model_mixin.py +1 -3
- edc_screening/model_mixins/screening_fields_model_mixin.py +2 -0
- edc_screening/modelform_mixins.py +1 -3
- edc_search/search_slug.py +2 -6
- edc_search/updater.py +2 -5
- edc_sites/admin/site_model_admin_mixin.py +4 -12
- edc_sites/management/commands/sync_sites.py +1 -3
- edc_sites/migrations/0007_edcpermissions.py +2 -4
- edc_sites/single_site/get_languages.py +1 -3
- edc_sites/site.py +4 -11
- edc_sites/system_checks.py +1 -4
- edc_sites/utils/add_or_update_django_sites.py +1 -3
- edc_subject_dashboard/migrations/0001_initial.py +1 -1
- edc_subject_dashboard/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_subject_dashboard/requisition_labels.py +1 -3
- edc_subject_dashboard/requisition_report.py +5 -15
- edc_subject_dashboard/requisition_verifier.py +2 -7
- edc_subject_dashboard/templatetags/edc_subject_dashboard_extras.py +2 -6
- edc_subject_dashboard/view_mixins/subject_visit_view_mixin.py +1 -2
- edc_subject_dashboard/view_utils/crf_button.py +1 -3
- edc_subject_dashboard/view_utils/subject_consent_listboard_button.py +1 -3
- edc_subject_dashboard/view_utils/timepoint_status_button.py +1 -3
- edc_subject_dashboard/views/requisition_print_actions_view.py +4 -12
- edc_subject_dashboard/views/requisition_verify_actions_view.py +1 -3
- edc_subject_dashboard/views/subject_dashboard_view.py +1 -3
- edc_timepoint/apps.py +1 -3
- edc_timepoint/timepoint.py +1 -3
- edc_timepoint/timepoint_lookup.py +1 -3
- edc_transfer/form_validators.py +4 -6
- edc_transfer/model_mixins.py +1 -3
- edc_transfer/modelform_mixins.py +1 -3
- edc_unblinding/action_items.py +1 -3
- edc_unblinding/admin_site.py +1 -3
- edc_unblinding/migrations/0001_initial.py +6 -4
- edc_unblinding/migrations/0002_auto_20210908_2318.py +1 -1
- edc_unblinding/migrations/0009_alter_unblindingrequest_managers_and_more.py +2 -1
- edc_unblinding/migrations/0010_alter_historicalunblindingrequest_device_created_and_more.py +9 -25
- edc_unblinding/models/unblinding_request.py +1 -3
- edc_unblinding/models/unblinding_review.py +1 -3
- edc_utils/age.py +1 -3
- edc_utils/date.py +1 -3
- edc_utils/paths_for_urlpatterns.py +1 -3
- edc_utils/show_urls.py +1 -3
- edc_utils/text.py +1 -2
- edc_view_utils/model_button.py +5 -13
- edc_view_utils/query_button.py +1 -3
- edc_visit_schedule/admin/subject_schedule_history_admin.py +1 -3
- edc_visit_schedule/baseline.py +1 -3
- edc_visit_schedule/migrations/0001_initial.py +3 -4
- edc_visit_schedule/migrations/0003_historicalvisitschedule_visitschedule.py +1 -3
- edc_visit_schedule/migrations/0004_auto_20190629_1800.py +1 -3
- edc_visit_schedule/migrations/0011_alter_historicalvisitschedule_device_created_and_more.py +7 -19
- edc_visit_schedule/migrations/0012_alter_subjectschedulehistory_managers_and_more.py +2 -1
- edc_visit_schedule/migrations/0015_historicalonschedule_offschedule_onschedule.py +9 -13
- edc_visit_schedule/migrations/0017_alter_onschedule_managers.py +2 -1
- edc_visit_schedule/model_mixins/crf/crf_schedule_model_mixin.py +1 -1
- edc_visit_schedule/model_mixins/off_schedule_model_mixin.py +2 -6
- edc_visit_schedule/model_mixins/on_schedule_model_mixin.py +1 -3
- edc_visit_schedule/modelform_mixins/off_schedule_modelform_mixin.py +1 -3
- edc_visit_schedule/models/subject_schedule_history.py +3 -8
- edc_visit_schedule/ordered_collection.py +1 -3
- edc_visit_schedule/schedule/schedule.py +6 -17
- edc_visit_schedule/simple_model_validator.py +3 -8
- edc_visit_schedule/site_visit_schedules.py +5 -15
- edc_visit_schedule/subject_schedule.py +4 -16
- edc_visit_schedule/system_checks.py +1 -3
- edc_visit_schedule/utils.py +8 -17
- edc_visit_schedule/view_mixins.py +4 -10
- edc_visit_schedule/visit/crf.py +1 -2
- edc_visit_schedule/visit/requisition.py +1 -3
- edc_visit_schedule/visit/visit.py +6 -16
- edc_visit_schedule/visit/window_period.py +3 -3
- edc_visit_schedule/visit_schedule/visit_schedule.py +2 -5
- edc_visit_tracking/crf_date_validator.py +1 -2
- edc_visit_tracking/form_validators/visit_form_validator.py +2 -8
- edc_visit_tracking/form_validators/visit_missed_form_validator.py +3 -9
- edc_visit_tracking/migrations/0003_auto_20220913_2139.py +2 -6
- edc_visit_tracking/migrations/0004_subjectvisit_subjectvisitmissedreasons_extra_value_and_more.py +8 -16
- edc_visit_tracking/model_mixins/base/visit_methods_model_mixin.py +2 -6
- edc_visit_tracking/model_mixins/crfs/visit_tracking_crf_model_mixin.py +1 -3
- edc_visit_tracking/model_mixins/requisitions/visit_tracking_requisition_model_mixin.py +1 -3
- edc_visit_tracking/model_mixins/subject_visit_missed_model_mixin.py +1 -3
- edc_visit_tracking/model_mixins/visit_model_mixin/visit_model_fields_mixin.py +1 -2
- edc_visit_tracking/modeladmin_mixins/crf_model_admin_mixin.py +4 -8
- edc_visit_tracking/modeladmin_mixins/visit_model_admin_mixin.py +4 -6
- edc_visit_tracking/modelform_mixins/crf/visit_tracking_crf_modelform_mixin.py +2 -6
- edc_visit_tracking/modelform_mixins/utils.py +1 -3
- edc_visit_tracking/modelform_mixins/visit_tracking_modelform_mixin.py +1 -2
- edc_visit_tracking/models/signals.py +1 -3
- edc_visit_tracking/stubs.py +1 -3
- edc_visit_tracking/utils.py +1 -2
- edc_visit_tracking/view_utils/related_visit_button.py +1 -3
- edc_visit_tracking/visit_sequence.py +1 -3
- edc_vitals/__init__.py +2 -0
- edc_vitals/apps.py +6 -0
- edc_vitals/calculators/__init__.py +1 -0
- edc_vitals/calculators/bmi.py +70 -0
- edc_vitals/form_validators/__init__.py +5 -0
- edc_vitals/form_validators/blood_pressure_form_validator_mixin.py +40 -0
- edc_vitals/form_validators/bmi_form_validator_mixin.py +19 -0
- edc_vitals/form_validators/weight_height_with_bmi_form_validator_mixin.py +13 -0
- edc_vitals/migrations/__init__.py +0 -0
- edc_vitals/model_mixins/__init__.py +5 -0
- edc_vitals/model_mixins/blood_pressure_model_mixin.py +80 -0
- edc_vitals/model_mixins/weight_height_bmi_model_mixin.py +42 -0
- edc_vitals/models/__init__.py +10 -0
- edc_vitals/models/fields/__init__.py +7 -0
- edc_vitals/models/fields/blood_pressure.py +36 -0
- edc_vitals/models/fields/heart_rate.py +22 -0
- edc_vitals/models/fields/height.py +26 -0
- edc_vitals/models/fields/respiratory_rate.py +22 -0
- edc_vitals/models/fields/temperature.py +26 -0
- edc_vitals/models/fields/waist_circumference.py +23 -0
- edc_vitals/models/fields/weight.py +26 -0
- edc_vitals/utils.py +51 -0
- edc_vitals/validators.py +5 -0
- edc_lab_results/model_mixin_factory/__init__.py +0 -2
- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/licenses/LICENSE +0 -0
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+
def datetime_equal(self, datetime_field1: str, datetime_field2: str, msg=None) -> None:
|
|
129
123
|
datetime_field1 = self.cleaned_data.get(datetime_field1)
|
|
130
124
|
datetime_field2 = self.cleaned_data.get(datetime_field2)
|
|
131
125
|
msg = msg or f"Invalid. Cannot be before date of {datetime_field2} "
|
|
@@ -134,7 +128,5 @@ class DateRangeFieldValidator(BaseFormValidator):
|
|
|
134
128
|
datetime_field2 = to_utc(datetime_field2)
|
|
135
129
|
if datetime_field1 == datetime_field2:
|
|
136
130
|
raise forms.ValidationError(
|
|
137
|
-
{
|
|
138
|
-
datetime_field1: f"{msg}. Got {formatted_datetime(datetime_field2)}."
|
|
139
|
-
}
|
|
131
|
+
{datetime_field1: f"{msg}. Got {formatted_datetime(datetime_field2)}."}
|
|
140
132
|
)
|
|
@@ -40,9 +40,7 @@ class DateValidator(BaseFormValidator):
|
|
|
40
40
|
)
|
|
41
41
|
field_value = field_value or self._get_as_date(field)
|
|
42
42
|
if field_value and reference_value:
|
|
43
|
-
if not self._compare_date_to_reference_value(
|
|
44
|
-
op, field_value, reference_value
|
|
45
|
-
):
|
|
43
|
+
if not self._compare_date_to_reference_value(op, field_value, reference_value):
|
|
46
44
|
if field:
|
|
47
45
|
self.raise_validation_error({field: msg}, INVALID_ERROR)
|
|
48
46
|
else:
|
|
@@ -197,9 +195,7 @@ class DateValidator(BaseFormValidator):
|
|
|
197
195
|
"""Convenience method if comparing with report_datetime."""
|
|
198
196
|
msg = None
|
|
199
197
|
report_datetime_field = report_datetime_field or "report_datetime"
|
|
200
|
-
if self.cleaned_data.get(field) and self.cleaned_data.get(
|
|
201
|
-
report_datetime_field
|
|
202
|
-
):
|
|
198
|
+
if self.cleaned_data.get(field) and self.cleaned_data.get(report_datetime_field):
|
|
203
199
|
dte = self.cleaned_data.get(report_datetime_field).strftime(
|
|
204
200
|
convert_php_dateformat(settings.DATETIME_FORMAT)
|
|
205
201
|
)
|
|
@@ -221,9 +217,7 @@ class DateValidator(BaseFormValidator):
|
|
|
221
217
|
"""Convenience method if comparing with report_datetime."""
|
|
222
218
|
msg = None
|
|
223
219
|
report_datetime_field = report_datetime_field or "report_datetime"
|
|
224
|
-
if self.cleaned_data.get(field) and self.cleaned_data.get(
|
|
225
|
-
report_datetime_field
|
|
226
|
-
):
|
|
220
|
+
if self.cleaned_data.get(field) and self.cleaned_data.get(report_datetime_field):
|
|
227
221
|
dte = self.cleaned_data.get(report_datetime_field).strftime(
|
|
228
222
|
convert_php_dateformat(settings.DATETIME_FORMAT)
|
|
229
223
|
)
|
|
@@ -124,9 +124,7 @@ class ManyToManyFieldValidator(BaseFormValidator):
|
|
|
124
124
|
"""
|
|
125
125
|
code: Optional[str] = None
|
|
126
126
|
message: dict = {}
|
|
127
|
-
if self.cleaned_data.get(field) == response and not self.cleaned_data.get(
|
|
128
|
-
m2m_field
|
|
129
|
-
):
|
|
127
|
+
if self.cleaned_data.get(field) == response and not self.cleaned_data.get(m2m_field):
|
|
130
128
|
message = {m2m_field: "This field is required"}
|
|
131
129
|
code = REQUIRED_ERROR
|
|
132
130
|
elif (
|
|
@@ -47,9 +47,7 @@ class OtherSpecifyFieldValidator(BaseFormValidator):
|
|
|
47
47
|
and not cleaned_data.get(other_specify_field)
|
|
48
48
|
):
|
|
49
49
|
ref = "" if not ref else f" ref: {ref}"
|
|
50
|
-
message = {
|
|
51
|
-
other_specify_field: required_msg or f"This field is required.{ref}"
|
|
52
|
-
}
|
|
50
|
+
message = {other_specify_field: required_msg or f"This field is required.{ref}"}
|
|
53
51
|
self._errors.update(message)
|
|
54
52
|
self._error_codes.append(REQUIRED_ERROR)
|
|
55
53
|
raise ValidationError(message, code=REQUIRED_ERROR)
|
|
@@ -60,8 +58,7 @@ class OtherSpecifyFieldValidator(BaseFormValidator):
|
|
|
60
58
|
):
|
|
61
59
|
ref = "" if not ref else f" ref: {ref}"
|
|
62
60
|
message = {
|
|
63
|
-
other_specify_field: not_required_msg
|
|
64
|
-
or f"This field is not required.{ref}"
|
|
61
|
+
other_specify_field: not_required_msg or f"This field is not required.{ref}"
|
|
65
62
|
}
|
|
66
63
|
self._errors.update(message)
|
|
67
64
|
self._error_codes.append(NOT_REQUIRED_ERROR)
|
|
@@ -69,8 +66,7 @@ class OtherSpecifyFieldValidator(BaseFormValidator):
|
|
|
69
66
|
elif field_value is None and cleaned_data.get(other_specify_field):
|
|
70
67
|
ref = "" if not ref else f" ref: {ref}"
|
|
71
68
|
message = {
|
|
72
|
-
other_specify_field: not_required_msg
|
|
73
|
-
or f"This field is not required.{ref}"
|
|
69
|
+
other_specify_field: not_required_msg or f"This field is not required.{ref}"
|
|
74
70
|
}
|
|
75
71
|
self._errors.update(message)
|
|
76
72
|
self._error_codes.append(NOT_REQUIRED_ERROR)
|
|
@@ -28,9 +28,7 @@ class RangeFieldValidator(BaseFormValidator):
|
|
|
28
28
|
if value is None and allow_none:
|
|
29
29
|
pass
|
|
30
30
|
elif value is None and not allow_none:
|
|
31
|
-
self.raise_validation_error(
|
|
32
|
-
{field: "This field is required."}, REQUIRED_ERROR
|
|
33
|
-
)
|
|
31
|
+
self.raise_validation_error({field: "This field is required."}, REQUIRED_ERROR)
|
|
34
32
|
elif r.match(str(value)):
|
|
35
33
|
lower_op = "<" if not lower_inclusive else "<="
|
|
36
34
|
upper_op = "<" if not upper_inclusive else "<="
|
|
@@ -23,9 +23,7 @@ class RequiredFieldValidator(BaseFormValidator):
|
|
|
23
23
|
self, field: str, msg: Optional[str] = None, inline_set: Optional[str] = None
|
|
24
24
|
) -> None:
|
|
25
25
|
if inline_set:
|
|
26
|
-
default_errmsg = _(
|
|
27
|
-
"Based on your responses, inline information is required."
|
|
28
|
-
)
|
|
26
|
+
default_errmsg = _("Based on your responses, inline information is required.")
|
|
29
27
|
message = {"__all__": (msg or default_errmsg).strip()}
|
|
30
28
|
else:
|
|
31
29
|
errmsg = _("This field is required")
|
|
@@ -37,9 +35,7 @@ class RequiredFieldValidator(BaseFormValidator):
|
|
|
37
35
|
self, field: str, msg: Optional[str] = None, inline_set: Optional[str] = None
|
|
38
36
|
) -> None:
|
|
39
37
|
if inline_set:
|
|
40
|
-
default_errmsg = _(
|
|
41
|
-
"Based on your responses, inline information is not required."
|
|
42
|
-
)
|
|
38
|
+
default_errmsg = _("Based on your responses, inline information is not required.")
|
|
43
39
|
message = {"__all__": (msg or default_errmsg).strip()}
|
|
44
40
|
else:
|
|
45
41
|
errmsg = _("This field is not required")
|
|
@@ -113,10 +109,7 @@ class RequiredFieldValidator(BaseFormValidator):
|
|
|
113
109
|
field_value not in responses
|
|
114
110
|
and (
|
|
115
111
|
field_required_has_value
|
|
116
|
-
and (
|
|
117
|
-
self.get(field_required, inline_set=inline_set)
|
|
118
|
-
!= NOT_APPLICABLE
|
|
119
|
-
)
|
|
112
|
+
and (self.get(field_required, inline_set=inline_set) != NOT_APPLICABLE)
|
|
120
113
|
)
|
|
121
114
|
):
|
|
122
115
|
self.raise_not_required(
|
|
@@ -252,11 +245,7 @@ class RequiredFieldValidator(BaseFormValidator):
|
|
|
252
245
|
self.update_cleaned_data_from_instance(field)
|
|
253
246
|
self._inspect_params(*responses, field=field, field_required=field_required)
|
|
254
247
|
if field in self.cleaned_data and field_required in self.cleaned_data:
|
|
255
|
-
if (
|
|
256
|
-
DWTA in responses
|
|
257
|
-
and optional_if_dwta
|
|
258
|
-
and self.cleaned_data.get(field) == DWTA
|
|
259
|
-
):
|
|
248
|
+
if DWTA in responses and optional_if_dwta and self.cleaned_data.get(field) == DWTA:
|
|
260
249
|
pass
|
|
261
250
|
elif self.cleaned_data.get(field) in responses and (
|
|
262
251
|
self.cleaned_data.get(field_required)
|
|
@@ -304,9 +293,7 @@ class RequiredFieldValidator(BaseFormValidator):
|
|
|
304
293
|
errmsg = _("`field` cannot be `None`")
|
|
305
294
|
raise InvalidModelFormFieldValidator(f"{errmsg}.")
|
|
306
295
|
elif not responses:
|
|
307
|
-
errmsg = _(
|
|
308
|
-
f"At least one valid response for field '{field}' must be provided."
|
|
309
|
-
)
|
|
296
|
+
errmsg = _(f"At least one valid response for field '{field}' must be provided.")
|
|
310
297
|
raise InvalidModelFormFieldValidator(errmsg)
|
|
311
298
|
elif not field_required:
|
|
312
299
|
raise InvalidModelFormFieldValidator('"field_required" cannot be None.')
|
edc_glucose/__init__.py
ADDED
|
File without changes
|
edc_glucose/apps.py
ADDED
edc_glucose/constants.py
ADDED
edc_glucose/fieldsets.py
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
glucose_fieldset_tuple: tuple[str, dict[str, tuple]] = (
|
|
2
|
+
"Blood Glucose Measurement",
|
|
3
|
+
{
|
|
4
|
+
"fields": (
|
|
5
|
+
"glucose_performed",
|
|
6
|
+
"glucose_fasting",
|
|
7
|
+
"glucose_fasting_duration_str",
|
|
8
|
+
"glucose_date",
|
|
9
|
+
"glucose_value",
|
|
10
|
+
"glucose_quantifier",
|
|
11
|
+
"glucose_units",
|
|
12
|
+
),
|
|
13
|
+
},
|
|
14
|
+
)
|
|
@@ -0,0 +1,6 @@
|
|
|
1
|
+
from .fasting_form_validator import FastingFormValidatorMixin
|
|
2
|
+
from .fbg_form_validator_mixin import FbgFormValidatorMixin
|
|
3
|
+
from .fbg_ogtt_form_validator_mixin import FbgOgttFormValidatorMixin
|
|
4
|
+
from .glucose_form_validator import GlucoseFormValidator
|
|
5
|
+
from .glucose_form_validator_mixin import GlucoseFormValidatorMixin
|
|
6
|
+
from .ogtt_form_validator_mixin import OgttFormValidatorMixin
|
|
@@ -0,0 +1,12 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
|
|
3
|
+
from edc_constants.constants import YES
|
|
4
|
+
|
|
5
|
+
|
|
6
|
+
class FastingFormValidatorMixin:
|
|
7
|
+
def validate_fasting_required_fields(self, fasting_prefix: str | None = None):
|
|
8
|
+
"""Uses fields `fasting`,`fasting_duration_str`"""
|
|
9
|
+
fasting_prefix = fasting_prefix or "fasting"
|
|
10
|
+
self.required_if(
|
|
11
|
+
YES, field=fasting_prefix, field_required=f"{fasting_prefix}_duration_str"
|
|
12
|
+
)
|
|
@@ -0,0 +1,32 @@
|
|
|
1
|
+
from edc_form_validators import FormValidator
|
|
2
|
+
|
|
3
|
+
|
|
4
|
+
class FbgFormValidatorMixin:
|
|
5
|
+
"""Declare with FormValidatorMixin, modelform"""
|
|
6
|
+
|
|
7
|
+
def validate_fbg_required_fields(self: FormValidator, fbg_prefix: str):
|
|
8
|
+
"""Uses fields `fbg_value`, `fbg_datetime`, `fbg_units`.
|
|
9
|
+
|
|
10
|
+
Args:
|
|
11
|
+
:param fbg_prefix: e.g. fbg, fbg2, etc
|
|
12
|
+
"""
|
|
13
|
+
|
|
14
|
+
self.date_is_after_or_raise(
|
|
15
|
+
field=f"{fbg_prefix}_datetime",
|
|
16
|
+
reference_field=self.report_datetime_field_attr,
|
|
17
|
+
inclusive=True,
|
|
18
|
+
)
|
|
19
|
+
self.required_if_true(
|
|
20
|
+
self.cleaned_data.get(f"{fbg_prefix}_datetime"),
|
|
21
|
+
field_required=f"{fbg_prefix}_value",
|
|
22
|
+
)
|
|
23
|
+
|
|
24
|
+
self.required_if_true(
|
|
25
|
+
self.cleaned_data.get(f"{fbg_prefix}_value"),
|
|
26
|
+
field_required=f"{fbg_prefix}_units",
|
|
27
|
+
)
|
|
28
|
+
|
|
29
|
+
self.required_if_true(
|
|
30
|
+
self.cleaned_data.get(f"{fbg_prefix}_value"),
|
|
31
|
+
field_required=f"{fbg_prefix}_datetime",
|
|
32
|
+
)
|
|
@@ -0,0 +1,47 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
|
|
3
|
+
from django import forms
|
|
4
|
+
|
|
5
|
+
from ..utils import validate_glucose_as_millimoles_per_liter
|
|
6
|
+
from .fbg_form_validator_mixin import FbgFormValidatorMixin
|
|
7
|
+
from .ogtt_form_validator_mixin import OgttFormValidatorMixin
|
|
8
|
+
|
|
9
|
+
|
|
10
|
+
class FbgOgttFormValidatorMixin(FbgFormValidatorMixin, OgttFormValidatorMixin):
|
|
11
|
+
def validate_glucose_testing_matrix(
|
|
12
|
+
self,
|
|
13
|
+
ogtt_prefix: str | None = None,
|
|
14
|
+
fbg_prefix: str | None = None,
|
|
15
|
+
include_fbg: bool | None = None,
|
|
16
|
+
) -> None:
|
|
17
|
+
ogtt_prefix = ogtt_prefix or "ogtt"
|
|
18
|
+
fbg_prefix = fbg_prefix or "fbg"
|
|
19
|
+
|
|
20
|
+
include_fbg = True if include_fbg is None else include_fbg
|
|
21
|
+
if include_fbg:
|
|
22
|
+
self.validate_fbg_required_fields(fbg_prefix)
|
|
23
|
+
validate_glucose_as_millimoles_per_liter(fbg_prefix, self.cleaned_data)
|
|
24
|
+
self.validate_ogtt_required_fields(ogtt_prefix=ogtt_prefix)
|
|
25
|
+
validate_glucose_as_millimoles_per_liter(ogtt_prefix, self.cleaned_data)
|
|
26
|
+
self.validate_ogtt_dates(ogtt_prefix=ogtt_prefix)
|
|
27
|
+
self.validate_fbg_before_ogtt(ogtt_prefix=ogtt_prefix, fbg_prefix=fbg_prefix)
|
|
28
|
+
self.validate_ogtt_time_interval()
|
|
29
|
+
|
|
30
|
+
def validate_fbg_before_ogtt(
|
|
31
|
+
self, ogtt_prefix: str | None = None, fbg_prefix: str | None = None
|
|
32
|
+
):
|
|
33
|
+
"""Validate the FBG is performed before the OGTT"""
|
|
34
|
+
ogtt_prefix = ogtt_prefix or "ogtt"
|
|
35
|
+
fbg_prefix = fbg_prefix or "fbg"
|
|
36
|
+
fbg_dte = self.cleaned_data.get(f"{fbg_prefix}_datetime")
|
|
37
|
+
ogtt_base_dte = self.cleaned_data.get(f"{ogtt_prefix}_base_datetime")
|
|
38
|
+
if fbg_dte and ogtt_base_dte:
|
|
39
|
+
total_seconds = (ogtt_base_dte - fbg_dte).total_seconds()
|
|
40
|
+
if total_seconds <= 1:
|
|
41
|
+
raise forms.ValidationError(
|
|
42
|
+
{
|
|
43
|
+
f"{ogtt_prefix}_base_datetime": (
|
|
44
|
+
"Invalid date. Expected to be after time FBG level was measured"
|
|
45
|
+
)
|
|
46
|
+
}
|
|
47
|
+
)
|
|
@@ -0,0 +1,44 @@
|
|
|
1
|
+
from edc_dx_review.utils import (
|
|
2
|
+
raise_if_clinical_review_does_not_exist,
|
|
3
|
+
raise_if_initial_review_does_not_exist,
|
|
4
|
+
)
|
|
5
|
+
|
|
6
|
+
from edc_constants.constants import DM
|
|
7
|
+
from edc_crf.crf_form_validator_mixins import CrfFormValidatorMixin
|
|
8
|
+
from edc_form_validators import FormValidator
|
|
9
|
+
from edc_visit_schedule.utils import raise_if_baseline
|
|
10
|
+
|
|
11
|
+
from .glucose_form_validator_mixin import GlucoseFormValidatorMixin
|
|
12
|
+
|
|
13
|
+
|
|
14
|
+
class GlucoseFormValidator(
|
|
15
|
+
GlucoseFormValidatorMixin,
|
|
16
|
+
CrfFormValidatorMixin,
|
|
17
|
+
FormValidator,
|
|
18
|
+
):
|
|
19
|
+
"""Declared as an example of the clean method to use with
|
|
20
|
+
the mixin.
|
|
21
|
+
"""
|
|
22
|
+
|
|
23
|
+
required_at_baseline = True
|
|
24
|
+
require_diagnosis = False
|
|
25
|
+
require_clinical_review_crf = True
|
|
26
|
+
prefix = "glucose"
|
|
27
|
+
|
|
28
|
+
def clean(self):
|
|
29
|
+
if self.cleaned_data.get("subject_visit"):
|
|
30
|
+
if not self.required_at_baseline:
|
|
31
|
+
raise_if_baseline(self.cleaned_data.get("subject_visit"))
|
|
32
|
+
self.raise_if_clinical_review_does_not_exist()
|
|
33
|
+
if self.require_diagnosis:
|
|
34
|
+
raise_if_initial_review_does_not_exist(
|
|
35
|
+
self.cleaned_data.get("subject_visit"), DM
|
|
36
|
+
)
|
|
37
|
+
self.validate_glucose_test()
|
|
38
|
+
|
|
39
|
+
def raise_if_clinical_review_does_not_exist(self) -> None:
|
|
40
|
+
if self.require_clinical_review_crf:
|
|
41
|
+
return raise_if_clinical_review_does_not_exist(
|
|
42
|
+
self.cleaned_data.get("subject_visit")
|
|
43
|
+
)
|
|
44
|
+
return None
|
|
@@ -0,0 +1,53 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
|
|
3
|
+
from dateutil.relativedelta import relativedelta
|
|
4
|
+
|
|
5
|
+
from edc_constants.constants import YES
|
|
6
|
+
|
|
7
|
+
from ..utils import validate_glucose_as_millimoles_per_liter
|
|
8
|
+
|
|
9
|
+
INVALID_GLUCOSE_DATE = "INVALID_GLUCOSE_DATE"
|
|
10
|
+
|
|
11
|
+
|
|
12
|
+
class GlucoseFormValidatorMixin:
|
|
13
|
+
prefix: str | None = None
|
|
14
|
+
|
|
15
|
+
def validate_glucose_test(self, prefix: str | None = None) -> None:
|
|
16
|
+
prefix = prefix or self.prefix or "glucose"
|
|
17
|
+
self.applicable_if(
|
|
18
|
+
YES, field=f"{prefix}_performed", field_applicable=f"{prefix}_fasting"
|
|
19
|
+
)
|
|
20
|
+
self.required_if(
|
|
21
|
+
YES,
|
|
22
|
+
field=f"{prefix}_fasting",
|
|
23
|
+
field_required=f"{prefix}_fasting_duration_str",
|
|
24
|
+
)
|
|
25
|
+
self.required_if(YES, field=f"{prefix}_performed", field_required=f"{prefix}_date")
|
|
26
|
+
self.required_if(YES, field=f"{prefix}_performed", field_required=f"{prefix}_value")
|
|
27
|
+
validate_glucose_as_millimoles_per_liter(prefix, self.cleaned_data)
|
|
28
|
+
self.required_if(
|
|
29
|
+
YES, field=f"{prefix}_performed", field_required=f"{prefix}_quantifier"
|
|
30
|
+
)
|
|
31
|
+
self.required_if(YES, field=f"{prefix}_performed", field_required=f"{prefix}_units")
|
|
32
|
+
|
|
33
|
+
def validate_test_date_within_max_months(
|
|
34
|
+
self, date_fld: str, max_months: int | None = None
|
|
35
|
+
):
|
|
36
|
+
max_months = max_months or 6
|
|
37
|
+
if self.cleaned_data.get(date_fld) and self.cleaned_data.get("report_datetime"):
|
|
38
|
+
try:
|
|
39
|
+
dt = self.cleaned_data.get(date_fld).date()
|
|
40
|
+
except AttributeError:
|
|
41
|
+
dt = self.cleaned_data.get(date_fld)
|
|
42
|
+
report_datetime = self.cleaned_data.get("report_datetime").date()
|
|
43
|
+
rdelta = relativedelta(report_datetime, dt)
|
|
44
|
+
months = rdelta.months + (12 * rdelta.years)
|
|
45
|
+
if months >= max_months or months < 0:
|
|
46
|
+
if months < 0:
|
|
47
|
+
msg = "Invalid. Cannot be a future date."
|
|
48
|
+
else:
|
|
49
|
+
msg = (
|
|
50
|
+
f"Invalid. Must be within the last {max_months} months. "
|
|
51
|
+
f"Got {abs(months)}m ago."
|
|
52
|
+
)
|
|
53
|
+
self.raise_validation_error({date_fld: msg}, INVALID_GLUCOSE_DATE)
|
|
@@ -0,0 +1,91 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
|
|
3
|
+
from django import forms
|
|
4
|
+
|
|
5
|
+
from edc_constants.constants import NO
|
|
6
|
+
|
|
7
|
+
|
|
8
|
+
class OgttFormValidatorMixin:
|
|
9
|
+
def validate_ogtt_required_fields(
|
|
10
|
+
self,
|
|
11
|
+
ogtt_prefix: str | None = None,
|
|
12
|
+
fasting_prefix: str | None = None,
|
|
13
|
+
) -> None:
|
|
14
|
+
"""Uses fields `fasting`, `ogtt_base_datetime`, `ogtt_datetime`,
|
|
15
|
+
`ogtt_value`, `ogtt_units`
|
|
16
|
+
"""
|
|
17
|
+
ogtt = ogtt_prefix or "ogtt"
|
|
18
|
+
fasting = fasting_prefix or "fasting"
|
|
19
|
+
self.required_if_true(
|
|
20
|
+
self.cleaned_data.get(f"{ogtt}_datetime"),
|
|
21
|
+
field_required=f"{ogtt}_value",
|
|
22
|
+
inverse=False,
|
|
23
|
+
)
|
|
24
|
+
|
|
25
|
+
self.required_if_true(
|
|
26
|
+
self.cleaned_data.get(f"{ogtt}_value"),
|
|
27
|
+
field_required=f"{ogtt}_datetime",
|
|
28
|
+
inverse=False,
|
|
29
|
+
)
|
|
30
|
+
|
|
31
|
+
self.not_required_if(
|
|
32
|
+
NO,
|
|
33
|
+
field=fasting,
|
|
34
|
+
field_not_required=f"{ogtt}_base_datetime",
|
|
35
|
+
inverse=False,
|
|
36
|
+
)
|
|
37
|
+
self.not_required_if(
|
|
38
|
+
NO, field=fasting, field_not_required=f"{ogtt}_datetime", inverse=False
|
|
39
|
+
)
|
|
40
|
+
self.not_required_if(
|
|
41
|
+
NO, field=fasting, field_not_required=f"{ogtt}_value", inverse=False
|
|
42
|
+
)
|
|
43
|
+
|
|
44
|
+
self.required_if_true(
|
|
45
|
+
self.cleaned_data.get(f"{ogtt}_value"),
|
|
46
|
+
field_required=f"{ogtt}_units",
|
|
47
|
+
)
|
|
48
|
+
|
|
49
|
+
self.not_required_if(
|
|
50
|
+
NO, field=fasting, field_not_required=f"{ogtt}_units", inverse=False
|
|
51
|
+
)
|
|
52
|
+
|
|
53
|
+
def validate_ogtt_dates(self, ogtt_prefix: str | None = None) -> None:
|
|
54
|
+
ogtt = ogtt_prefix or "ogtt"
|
|
55
|
+
ogtt_base_dte = self.cleaned_data.get(f"{ogtt}_base_datetime")
|
|
56
|
+
ogtt_dte = self.cleaned_data.get(f"{ogtt}_datetime")
|
|
57
|
+
if ogtt_base_dte and ogtt_dte:
|
|
58
|
+
tdelta = ogtt_dte - ogtt_base_dte
|
|
59
|
+
if tdelta.total_seconds() < 3600:
|
|
60
|
+
raise forms.ValidationError(
|
|
61
|
+
{
|
|
62
|
+
f"{ogtt}_datetime": (
|
|
63
|
+
"Invalid. Expected more time between OGTT initial and 2hr."
|
|
64
|
+
)
|
|
65
|
+
}
|
|
66
|
+
)
|
|
67
|
+
if tdelta.seconds > (3600 * 5):
|
|
68
|
+
raise forms.ValidationError(
|
|
69
|
+
{
|
|
70
|
+
f"{ogtt}_datetime": (
|
|
71
|
+
"Invalid. Expected less time between OGTT initial and 2hr."
|
|
72
|
+
)
|
|
73
|
+
}
|
|
74
|
+
)
|
|
75
|
+
|
|
76
|
+
def validate_ogtt_time_interval(self, ogtt_prefix: str | None = None) -> None:
|
|
77
|
+
"""Validate the OGTT is measured 2 hrs after base date"""
|
|
78
|
+
ogtt = ogtt_prefix or "ogtt"
|
|
79
|
+
ogtt_base_dte = self.cleaned_data.get(f"{ogtt}_base_datetime")
|
|
80
|
+
ogtt_dte = self.cleaned_data.get(f"{ogtt}_datetime")
|
|
81
|
+
if ogtt_base_dte and ogtt_dte:
|
|
82
|
+
diff = (ogtt_dte - ogtt_base_dte).total_seconds() / 60.0
|
|
83
|
+
if diff <= 1.0:
|
|
84
|
+
raise forms.ValidationError(
|
|
85
|
+
{
|
|
86
|
+
f"{ogtt}_datetime": (
|
|
87
|
+
"Invalid date. Expected to be after time oral glucose "
|
|
88
|
+
f"tolerance test was performed. ({diff})"
|
|
89
|
+
)
|
|
90
|
+
}
|
|
91
|
+
)
|
|
@@ -0,0 +1,42 @@
|
|
|
1
|
+
from decimal import Decimal
|
|
2
|
+
|
|
3
|
+
from django.contrib.admin import SimpleListFilter
|
|
4
|
+
|
|
5
|
+
__all__ = ["FbgListFilter", "OgttListFilter"]
|
|
6
|
+
|
|
7
|
+
|
|
8
|
+
class FbgListFilter(SimpleListFilter):
|
|
9
|
+
title = "FBG"
|
|
10
|
+
parameter_name = "fbg_value"
|
|
11
|
+
|
|
12
|
+
def lookups(self, request, model_admin):
|
|
13
|
+
return (
|
|
14
|
+
("fbg_normal", "below 7.0 mmol/L"),
|
|
15
|
+
("fbg_high", "above 7.0 mmol/L (incl)"),
|
|
16
|
+
)
|
|
17
|
+
|
|
18
|
+
def queryset(self, request, queryset):
|
|
19
|
+
self.value()
|
|
20
|
+
if self.value() == "fbg_normal":
|
|
21
|
+
return queryset.filter(fbg_value__lt=Decimal("7.0"))
|
|
22
|
+
if self.value() == "fbg_high":
|
|
23
|
+
return queryset.filter(fbg_value__gte=Decimal("7.0"))
|
|
24
|
+
return queryset
|
|
25
|
+
|
|
26
|
+
|
|
27
|
+
class OgttListFilter(SimpleListFilter):
|
|
28
|
+
title = "OGTT"
|
|
29
|
+
parameter_name = "ogtt_value"
|
|
30
|
+
|
|
31
|
+
def lookups(self, request, model_admin):
|
|
32
|
+
return (
|
|
33
|
+
("ogtt_normal", "below 11.1 mmol/L"),
|
|
34
|
+
("ogtt_high", "above 11.1 mmol/L (incl)"),
|
|
35
|
+
)
|
|
36
|
+
|
|
37
|
+
def queryset(self, request, queryset):
|
|
38
|
+
if self.value() == "ogtt_normal":
|
|
39
|
+
return queryset.filter(ogtt_value__lt=Decimal("11.1"))
|
|
40
|
+
if self.value() == "ogtt_high":
|
|
41
|
+
return queryset.filter(ogtt_value__gte=Decimal("11.1"))
|
|
42
|
+
return queryset
|
|
File without changes
|