clinicedc 2.0.1__py3-none-any.whl → 2.0.2__py3-none-any.whl

edc_refusal/migrations/0001_initial.py

@@ -1,13 +1,14 @@
 # Generated by Django 3.2.4 on 2021-07-14 21:55
 
 import _socket
-from django.db import migrations, models
 import django.db.models.deletion
 import django_audit_fields.fields.hostname_modification_field
 import django_audit_fields.fields.userfield
 import django_audit_fields.fields.uuid_auto_field
 import django_audit_fields.models.audit_model_mixin
 import django_revision.revision_field
+from django.db import migrations, models
+
 import edc_model.models.fields.other_charfield
 import edc_sites.models
 import edc_utils.date

edc_refusal/migrations/0002_historicalsubjectrefusal.py

@@ -1,18 +1,20 @@
 # Generated by Django 3.2.4 on 2021-07-15 00:37
 
+import uuid
+
 import _socket
-from django.conf import settings
-from django.db import migrations, models
 import django.db.models.deletion
 import django_audit_fields.fields.hostname_modification_field
 import django_audit_fields.fields.userfield
 import django_audit_fields.fields.uuid_auto_field
 import django_audit_fields.models.audit_model_mixin
 import django_revision.revision_field
+import simple_history.models
+from django.conf import settings
+from django.db import migrations, models
+
 import edc_model.models.fields.other_charfield
 import edc_utils.date
-import simple_history.models
-import uuid
 
 
 class Migration(migrations.Migration):

edc_refusal/migrations/0004_refusalreasons_plural_name.py

@@ -12,8 +12,6 @@ class Migration(migrations.Migration):
         migrations.AddField(
             model_name="refusalreasons",
             name="plural_name",
-            field=models.CharField(
-                max_length=250, null=True, verbose_name="Plural name"
-            ),
+            field=models.CharField(max_length=250, null=True, verbose_name="Plural name"),
         ),
     ]

edc_refusal/migrations/0005_alter_subjectrefusal_options_and_more.py

@@ -1,9 +1,10 @@
 # Generated by Django 4.2.1 on 2023-07-05 02:16
 
 import django.db.models.manager
-import edc_sites.models
 from django.db import migrations
 
+import edc_sites.models
+
 
 class Migration(migrations.Migration):
     dependencies = [

edc_refusal/migrations/0006_alter_subjectrefusal_managers.py

@@ -1,9 +1,10 @@
 # Generated by Django 4.2.1 on 2023-07-07 19:32
 
 import django.db.models.manager
-import edc_sites.models
 from django.db import migrations
 
+import edc_sites.models
+
 
 class Migration(migrations.Migration):
     dependencies = [

edc_refusal/migrations/0008_alter_historicalsubjectrefusal_device_created_and_more.py

@@ -1,8 +1,8 @@
 # Generated by Django 4.2.4 on 2023-08-23 01:13
 
 import _socket
-from django.db import migrations, models
 import django_audit_fields.fields.hostname_modification_field
+from django.db import migrations, models
 
 
 class Migration(migrations.Migration):
@@ -14,16 +14,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="historicalsubjectrefusal",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="historicalsubjectrefusal",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="historicalsubjectrefusal",
@@ -49,16 +45,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="subjectrefusal",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="subjectrefusal",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="subjectrefusal",

edc_registration/admin_site.py

@@ -2,6 +2,4 @@ from edc_model_admin.admin_site import EdcAdminSite
 
 from .apps import AppConfig
 
-edc_registration_admin = EdcAdminSite(
-    name="edc_registration_admin", app_label=AppConfig.name
-)
+edc_registration_admin = EdcAdminSite(name="edc_registration_admin", app_label=AppConfig.name)

edc_registration/migrations/0001_initial.py

@@ -10,12 +10,13 @@ import django_crypto_fields.fields.identity_field
 import django_crypto_fields.fields.lastname_field
 import django_extensions.db.fields
 import django_revision.revision_field
+from django.db import migrations, models
+
 import edc_model_fields.fields
 import edc_model_fields.fields.date_estimated
 import edc_model_fields.fields.hostname_modification_field
 import edc_model_fields.fields.userfield
 import edc_utils
-from django.db import migrations, models
 
 
 class Migration(migrations.Migration):
@@ -199,9 +200,7 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "sid",
-                    models.CharField(
-                        blank=True, max_length=15, null=True, verbose_name="SID"
-                    ),
+                    models.CharField(blank=True, max_length=15, null=True, verbose_name="SID"),
                 ),
                 ("study_site", models.CharField(blank=True, max_length=50, null=True)),
                 (

edc_registration/migrations/0002_auto_20161127_2226.py

@@ -2,9 +2,10 @@
 # Generated by Django 1.10.3 on 2016-11-27 22:26
 from __future__ import unicode_literals
 
-import edc_utils
 from django.db import migrations, models
 
+import edc_utils
+
 
 class Migration(migrations.Migration):
     dependencies = [("edc_registration", "0001_initial")]
@@ -13,15 +14,11 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="registeredsubject",
             name="created",
-            field=models.DateTimeField(
-                default=edc_utils.date.get_utcnow, editable=False
-            ),
+            field=models.DateTimeField(default=edc_utils.date.get_utcnow, editable=False),
         ),
         migrations.AlterField(
             model_name="registeredsubject",
             name="modified",
-            field=models.DateTimeField(
-                default=edc_utils.date.get_utcnow, editable=False
-            ),
+            field=models.DateTimeField(default=edc_utils.date.get_utcnow, editable=False),
         ),
     ]

edc_registration/migrations/0004_auto_20161221_0018.py

@@ -2,9 +2,10 @@
 # Generated by Django 1.10.4 on 2016-12-21 00:18
 from __future__ import unicode_literals
 
-import edc_utils
 from django.db import migrations, models
 
+import edc_utils
+
 
 class Migration(migrations.Migration):
     dependencies = [("edc_registration", "0003_registeredsubject_subject_type")]

edc_registration/migrations/0005_auto_20170111_1809.py

@@ -2,10 +2,11 @@
 # Generated by Django 1.10.4 on 2017-01-11 18:09
 from __future__ import unicode_literals
 
+from django.db import migrations, models
+
 import edc_model_fields.fields.hostname_modification_field
 import edc_model_fields.fields.userfield
 import edc_utils
-from django.db import migrations, models
 
 
 class Migration(migrations.Migration):

edc_registration/migrations/0008_auto_20170810_1032.py

@@ -3,9 +3,10 @@
 from __future__ import unicode_literals
 
 import _socket
-import edc_model_fields.fields.userfield
 from django.db import migrations, models
 
+import edc_model_fields.fields.userfield
+
 
 class Migration(migrations.Migration):
     dependencies = [("edc_registration", "0007_auto_20170321_1119")]

edc_registration/migrations/0012_auto_20180116_1528.py

@@ -1,8 +1,9 @@
 # Generated by Django 2.0.1 on 2018-01-16 13:28
 
-import edc_sites.models
 from django.db import migrations
 
+import edc_sites.models
+
 
 class Migration(migrations.Migration):
     dependencies = [("edc_registration", "0011_auto_20180116_1411")]

edc_registration/migrations/0015_auto_20181006_2257.py

@@ -1,9 +1,9 @@
 # Generated by Django 2.1 on 2018-10-06 20:57
 
-import edc_sites.models
 from django.db import migrations
 
 import edc_registration.models.managers
+import edc_sites.models
 
 
 class Migration(migrations.Migration):

edc_registration/migrations/0016_historicalregisteredsubject.py

@@ -11,14 +11,15 @@ import django_crypto_fields.fields.firstname_field
 import django_crypto_fields.fields.identity_field
 import django_crypto_fields.fields.lastname_field
 import django_revision.revision_field
+import simple_history.models
+from django.conf import settings
+from django.db import migrations, models
+
 import edc_model_fields.fields.date_estimated
 import edc_model_fields.fields.hostname_modification_field
 import edc_model_fields.fields.identity_type_field
 import edc_model_fields.fields.userfield
 import edc_utils
-import simple_history.models
-from django.conf import settings
-from django.db import migrations, models
 
 
 class Migration(migrations.Migration):
@@ -193,9 +194,7 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "sid",
-                    models.CharField(
-                        blank=True, max_length=15, null=True, verbose_name="SID"
-                    ),
+                    models.CharField(blank=True, max_length=15, null=True, verbose_name="SID"),
                 ),
                 (
                     "subject_type",

edc_registration/migrations/0026_historicalregisteredsubject_familiar_name_and_more.py

@@ -1,7 +1,7 @@
 # Generated by Django 4.1.2 on 2023-01-25 00:06
 
-from django.db import migrations
 import django_crypto_fields.fields.lastname_field
+from django.db import migrations
 
 
 class Migration(migrations.Migration):

edc_registration/migrations/0028_alter_registeredsubject_managers.py

@@ -1,9 +1,9 @@
 # Generated by Django 4.2.1 on 2023-07-07 19:32
 
-import edc_sites.models
 from django.db import migrations
 
 import edc_registration.models.managers
+import edc_sites.models
 
 
 class Migration(migrations.Migration):

edc_registration/migrations/0029_alter_historicalregisteredsubject_device_created_and_more.py

@@ -1,8 +1,8 @@
 # Generated by Django 4.2.4 on 2023-08-23 01:13
 
 import _socket
-from django.db import migrations, models
 import django_audit_fields.fields.hostname_modification_field
+from django.db import migrations, models
 
 
 class Migration(migrations.Migration):
@@ -14,16 +14,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="historicalregisteredsubject",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="historicalregisteredsubject",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="historicalregisteredsubject",
@@ -49,16 +45,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="registeredsubject",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="registeredsubject",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="registeredsubject",

edc_registration/modeladmin_mixins.py

@@ -7,9 +7,7 @@ from edc_auth.constants import PII, PII_VIEW
 from edc_model_admin.dashboard import ModelAdminSubjectDashboardMixin
 
 
-class RegisteredSubjectModelAdminMixin(
-    ModelAdminSubjectDashboardMixin, admin.ModelAdmin
-):
+class RegisteredSubjectModelAdminMixin(ModelAdminSubjectDashboardMixin, admin.ModelAdmin):
     ordering = ("registration_datetime",)
 
     date_hierarchy = "registration_datetime"

edc_registration/models/registered_subject.py

@@ -24,9 +24,7 @@ from ..exceptions import RegisteredSubjectError
 from .managers import RegisteredSubjectManager
 
 
-class RegisteredSubject(
-    UniqueSubjectIdentifierModelMixin, SiteModelMixin, BaseUuidModel
-):
+class RegisteredSubject(UniqueSubjectIdentifierModelMixin, SiteModelMixin, BaseUuidModel):
     """A model mixin for the RegisteredSubject model (only)."""
 
     # may not be available when instance created (e.g. infants prior to birth
@@ -47,8 +45,7 @@ class RegisteredSubject(
             RegexValidator(
                 regex=r"^[A-Z]{2,3}$",
                 message=(
-                    "Ensure initials consist of letters "
-                    "only in upper case, no spaces."
+                    "Ensure initials consist of letters " "only in upper case, no spaces."
                 ),
             )
         ],
@@ -114,9 +111,7 @@ class RegisteredSubject(
 
     consent_datetime = models.DateTimeField(null=True, blank=True)
 
-    comment = models.TextField(
-        verbose_name="Comment", max_length=250, null=True, blank=True
-    )
+    comment = models.TextField(verbose_name="Comment", max_length=250, null=True, blank=True)
 
     additional_key = models.CharField(
         max_length=36,
@@ -262,9 +257,7 @@ class RegisteredSubject(
         ]
         indexes = BaseUuidModel.Meta.indexes + [
             models.Index(fields=["first_name", "dob", "initials", "additional_key"]),
-            models.Index(
-                fields=["subject_identifier", "identity", "screening_identifier"]
-            ),
+            models.Index(fields=["subject_identifier", "identity", "screening_identifier"]),
         ]
         permissions = (
             ("display_firstname", "Can display first name"),

edc_registration/utils.py

@@ -54,9 +54,7 @@ def get_registered_subject(
 def valid_subject_identifier_or_raise(
     subject_identifier: str, raise_exception: bool | None = None
 ) -> bool:
-    if not re.match(
-        ResearchProtocolConfig().subject_identifier_pattern, subject_identifier
-    ):
+    if not re.match(ResearchProtocolConfig().subject_identifier_pattern, subject_identifier):
         if raise_exception:
             raise RegisteredSubjectError(
                 f"Invalid subject identifier format. "

edc_reportable/admin_site.py

@@ -2,6 +2,4 @@ from edc_model_admin.admin_site import EdcAdminSite
 
 from .apps import AppConfig
 
-edc_reportable_admin = EdcAdminSite(
-    name="edc_reportable_admin", app_label=AppConfig.name
-)
+edc_reportable_admin = EdcAdminSite(name="edc_reportable_admin", app_label=AppConfig.name)

edc_reportable/data/normal_data/africa.py

@@ -36,23 +36,15 @@ normal_data = {
             **adult_age_options,
         ),
     ],
-    "alp": [
-        Formula(
-            "40<=x<=150", units=IU_LITER, gender=[MALE, FEMALE], **adult_age_options
-        )
-    ],
+    "alp": [Formula("40<=x<=150", units=IU_LITER, gender=[MALE, FEMALE], **adult_age_options)],
     "alt": [
         Formula("0<=x<=40", units=IU_LITER, gender=[MALE], **adult_age_options),
         Formula("0<=x<=35", units=IU_LITER, gender=[FEMALE], **adult_age_options),
     ],
     "amylase": [
-        Formula(
-            "25<=x<=125", units=IU_LITER, gender=[MALE, FEMALE], **adult_age_options
-        )
-    ],
-    "ast": [
-        Formula("5<=x<=34", units=IU_LITER, gender=[MALE, FEMALE], **adult_age_options)
+        Formula("25<=x<=125", units=IU_LITER, gender=[MALE, FEMALE], **adult_age_options)
     ],
+    "ast": [Formula("5<=x<=34", units=IU_LITER, gender=[MALE, FEMALE], **adult_age_options)],
     "egfr": [
         Formula(
             "0.0<=x<45.0",
@@ -142,9 +134,7 @@ normal_data = {
     ],
     # hematocrit
     "hct": [
-        Formula(
-            "37.0<=x<=54.0", units=PERCENT, gender=[MALE, FEMALE], **adult_age_options
-        )
+        Formula("37.0<=x<=54.0", units=PERCENT, gender=[MALE, FEMALE], **adult_age_options)
     ],
     "ldl": [
         Formula(

edc_reportable/evaluator.py

@@ -64,14 +64,10 @@ class Evaluator:
         self.lower_inclusive = lower_inclusive
         self.upper_inclusive = upper_inclusive
         self.lower_operator: str | None = (
-            None
-            if self.lower is None
-            else "<=" if self.lower_inclusive is True else "<"
+            None if self.lower is None else "<=" if self.lower_inclusive is True else "<"
         )
         self.upper_operator: str | None = (
-            None
-            if self.upper is None
-            else "<=" if self.upper_inclusive is True else "<"
+            None if self.upper is None else "<=" if self.upper_inclusive is True else "<"
         )
 
     def __repr__(self) -> str:

edc_reportable/formula.py

@@ -60,12 +60,8 @@ class Formula:
         self.lower, self.lower_inclusive, self.lln = self.parse_fragment(lower_str)
         self.upper, self.upper_inclusive, self.uln = self.parse_fragment(upper_str)
         self.gender = [self.gender] if isinstance(self.gender, str) else self.gender
-        self.lower_operator = (
-            "" if not self.lower else "<=" if self.lower_inclusive else "<"
-        )
-        self.upper_operator = (
-            "" if not self.upper else "<=" if self.upper_inclusive else "<"
-        )
+        self.lower_operator = "" if not self.lower else "<=" if self.lower_inclusive else "<"
+        self.upper_operator = "" if not self.upper else "<=" if self.upper_inclusive else "<"
         self.age_lower_operator = (
             "" if not self.age_lower else "<=" if self.age_lower_inclusive else "<"
         )

edc_reportable/management/commands/export_reportables.py

@@ -13,9 +13,7 @@ style = color_style()
 
 def export_daids_grading(path: str, reference_range_collection_name: str | None = None):
     path = Path(path or "~/").expanduser()
-    sys.stdout.write(
-        style.MIGRATE_HEADING("Exporting reportables to document (.csv) ...\n")
-    )
+    sys.stdout.write(style.MIGRATE_HEADING("Exporting reportables to document (.csv) ...\n"))
     reference_range_collection_name = (
         reference_range_collection_name or ResearchProtocolConfig().project_name.lower()
     )

edc_reportable/migrations/0001_initial.py

@@ -84,9 +84,7 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "device_created",
-                    models.CharField(
-                        blank=True, max_length=10, verbose_name="Device created"
-                    ),
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
                 ),
                 (
                     "device_modified",
@@ -218,9 +216,7 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "device_created",
-                    models.CharField(
-                        blank=True, max_length=10, verbose_name="Device created"
-                    ),
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
                 ),
                 (
                     "device_modified",
@@ -362,9 +358,7 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "device_created",
-                    models.CharField(
-                        blank=True, max_length=10, verbose_name="Device created"
-                    ),
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
                 ),
                 (
                     "device_modified",

edc_reportable/migrations/0003_referencerangecollection_grade1_and_more.py

@@ -41,9 +41,7 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="gradingdata",
             name="age_phrase",
-            field=models.CharField(
-                help_text="calculated in save()", max_length=25, null=True
-            ),
+            field=models.CharField(help_text="calculated in save()", max_length=25, null=True),
         ),
         migrations.AlterField(
             model_name="gradingdata",
@@ -66,9 +64,7 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="normaldata",
             name="age_phrase",
-            field=models.CharField(
-                help_text="calculated in save()", max_length=25, null=True
-            ),
+            field=models.CharField(help_text="calculated in save()", max_length=25, null=True),
         ),
         migrations.AlterField(
             model_name="normaldata",
@@ -166,9 +162,7 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "device_created",
-                    models.CharField(
-                        blank=True, max_length=10, verbose_name="Device created"
-                    ),
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
                 ),
                 (
                     "device_modified",

edc_reportable/migrations/0004_alter_referencerangecollection_grade3_and_more.py

@@ -1,5 +1,7 @@
 # Generated by Django 5.2.1 on 2025-06-04 16:31
 
+import uuid
+
 import _socket
 import django.core.validators
 import django.db.models.deletion
@@ -9,7 +11,6 @@ import django_audit_fields.fields.uuid_auto_field
 import django_audit_fields.models.audit_model_mixin
 import django_revision.revision_field
 import simple_history.models
-import uuid
 from django.conf import settings
 from django.db import migrations, models
 
@@ -99,9 +100,7 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "device_created",
-                    models.CharField(
-                        blank=True, max_length=10, verbose_name="Device created"
-                    ),
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
                 ),
                 (
                     "device_modified",
@@ -295,9 +294,7 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "device_created",
-                    models.CharField(
-                        blank=True, max_length=10, verbose_name="Device created"
-                    ),
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
                 ),
                 (
                     "device_modified",