clinicedc 2.0.1__py3-none-any.whl → 2.0.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of clinicedc might be problematic. Click here for more details.
- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/METADATA +15 -22
- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/RECORD +854 -787
- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/WHEEL +1 -1
- edc_action_item/action.py +10 -30
- edc_action_item/action_with_notification.py +1 -2
- edc_action_item/admin/action_item_admin.py +2 -6
- edc_action_item/admin_site.py +1 -3
- edc_action_item/auths.py +1 -3
- edc_action_item/create_or_update_action_type.py +1 -3
- edc_action_item/data_fixers.py +6 -20
- edc_action_item/forms/action_item_form.py +1 -3
- edc_action_item/management/commands/inspect_action_items.py +3 -9
- edc_action_item/migrations/0001_initial.py +4 -5
- edc_action_item/migrations/0003_auto_20180116_1528.py +2 -1
- edc_action_item/migrations/0006_auto_20180707_1659.py +3 -4
- edc_action_item/migrations/0007_auto_20180707_1715.py +1 -3
- edc_action_item/migrations/0008_auto_20180809_0303.py +2 -1
- edc_action_item/migrations/0014_auto_20181121_1738.py +2 -6
- edc_action_item/migrations/0015_auto_20190114_0250.py +4 -3
- edc_action_item/migrations/0021_auto_20190628_2113.py +1 -3
- edc_action_item/migrations/0022_auto_20190628_2136.py +2 -6
- edc_action_item/migrations/0030_edcpermissions.py +1 -1
- edc_action_item/migrations/0033_alter_actionitem_managers.py +1 -0
- edc_action_item/migrations/0034_alter_actionitem_device_created_and_more.py +13 -37
- edc_action_item/models/action_item.py +2 -6
- edc_action_item/models/action_model_mixin.py +5 -16
- edc_action_item/models/action_type.py +1 -3
- edc_action_item/models/reference.py +1 -2
- edc_action_item/models/signals.py +3 -9
- edc_action_item/site_action_items.py +5 -15
- edc_action_item/templatetags/action_item_extras.py +1 -3
- edc_action_item/view_utils/action_item_button.py +1 -3
- edc_action_item/view_utils/action_item_popover_list_item.py +1 -2
- edc_adherence/migrations/0002_nonadherencereasons_plural_name.py +1 -3
- edc_adherence/model_admin_mixin.py +1 -3
- edc_adverse_event/action_items/ae_followup_action.py +2 -6
- edc_adverse_event/action_items/ae_initial_action.py +3 -7
- edc_adverse_event/auth_objects.py +2 -6
- edc_adverse_event/constants.py +1 -3
- edc_adverse_event/form_validator_mixins/death_report_form_validator.py +1 -3
- edc_adverse_event/form_validator_mixins/requires_death_report_form_validator_mixin.py +2 -7
- edc_adverse_event/form_validators/hospitalization.py +1 -3
- edc_adverse_event/migrations/0003_auto_20191026_2231.py +3 -9
- edc_adverse_event/migrations/0008_auto_20220825_0451.py +1 -1
- edc_adverse_event/migrations/0009_auto_20220907_0157.py +1 -1
- edc_adverse_event/migrations/0010_auto_20220913_2139.py +4 -12
- edc_adverse_event/migrations/0013_alter_aeactionclassification_device_created_and_more.py +11 -31
- edc_adverse_event/model_mixins/ae_followup/ae_followup_fields_model_mixin.py +1 -3
- edc_adverse_event/model_mixins/ae_followup/ae_followup_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/ae_initial/ae_initial_ae_model_mixin.py +1 -3
- edc_adverse_event/model_mixins/ae_initial/ae_initial_fields_model_mixin.py +1 -3
- edc_adverse_event/model_mixins/ae_initial/ae_initial_susar_model_mixin.py +1 -2
- edc_adverse_event/model_mixins/ae_special_interest/aesi_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/ae_susar/ae_susar_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/ae_tmg/ae_tmg_fields_model_mixin.py +2 -6
- edc_adverse_event/model_mixins/ae_tmg/ae_tmg_model_mixin.py +1 -5
- edc_adverse_event/model_mixins/death_report/death_report_extra_fields_model_mixin.py +1 -2
- edc_adverse_event/model_mixins/death_report/death_report_model_mixin.py +2 -5
- edc_adverse_event/model_mixins/death_report/death_report_tmg_model_mixin.py +2 -7
- edc_adverse_event/model_mixins/death_report/simple_death_report_model_mixin.py +1 -3
- edc_adverse_event/modeladmin_mixins/ae_tmg_admin_mixin.py +1 -3
- edc_adverse_event/modeladmin_mixins/death_report_admin_mixin.py +6 -10
- edc_adverse_event/modelform_mixins/ae_tmg_modelform_mixin.py +1 -3
- edc_adverse_event/models/signals.py +3 -9
- edc_adverse_event/pdf_reports/ae_pdf_report.py +6 -18
- edc_adverse_event/pdf_reports/death_pdf_report.py +3 -9
- edc_adverse_event/templatetags/edc_adverse_event_extras.py +5 -15
- edc_adverse_event/utils.py +2 -6
- edc_adverse_event/view_mixins/ae/ae_listboard_view_mixin.py +1 -3
- edc_adverse_event/view_mixins/ae/death_report_listboard_view_mixin.py +1 -3
- edc_adverse_event/view_mixins/tmg/tmg_ae_listboard_view_mixin.py +2 -6
- edc_adverse_event/view_utils/tmg_button.py +2 -6
- edc_adverse_event/views/home_view.py +1 -3
- edc_adverse_event/views/tmg/death_listboard_view.py +1 -3
- edc_adverse_event/views/tmg/home_view.py +2 -6
- edc_adverse_event/views/tmg/summary_listboard_view.py +1 -3
- edc_appointment/admin/appointment_admin.py +1 -3
- edc_appointment/admin/list_filters.py +1 -3
- edc_appointment/admin_site.py +1 -3
- edc_appointment/analytics/dataframes/get_appointment_df.py +2 -6
- edc_appointment/appointment_reason_updater.py +2 -5
- edc_appointment/appointment_status_updater.py +1 -4
- edc_appointment/constants.py +1 -3
- edc_appointment/creators/appointment_creator.py +4 -10
- edc_appointment/creators/unscheduled_appointment_creator.py +3 -7
- edc_appointment/creators/utils.py +4 -0
- edc_appointment/form_validator_mixins/next_appointment_crf_form_validator_mixin.py +3 -10
- edc_appointment/form_validator_mixins/window_period_form_validator_mixin.py +3 -9
- edc_appointment/form_validators/appointment_form_validator.py +11 -37
- edc_appointment/form_validators/next_appointment_crf_form_validator.py +1 -3
- edc_appointment/form_validators/utils.py +1 -3
- edc_appointment/managers.py +2 -6
- edc_appointment/migrations/0002_auto_20161126_1156.py +5 -8
- edc_appointment/migrations/0003_auto_20161127_2226.py +7 -16
- edc_appointment/migrations/0006_auto_20170106_2118.py +2 -1
- edc_appointment/migrations/0008_auto_20171115_1601.py +3 -4
- edc_appointment/migrations/0014_auto_20180116_1411.py +2 -1
- edc_appointment/migrations/0024_auto_20200911_0425.py +1 -1
- edc_appointment/migrations/0034_appointmenttype_alter_appointment_appt_type_and_more.py +2 -4
- edc_appointment/migrations/0036_auto_20230124_1822.py +2 -6
- edc_appointment/migrations/0040_appointment_appt_type_other_and_more.py +1 -0
- edc_appointment/migrations/0042_alter_appointment_device_created_and_more.py +5 -13
- edc_appointment/migrations/0046_infosources.py +1 -3
- edc_appointment/migrations/0047_alter_appointment_options_and_more.py +1 -3
- edc_appointment/model_mixins/appointment_methods_model_mixin.py +1 -5
- edc_appointment/model_mixins/appointment_model_mixin.py +2 -8
- edc_appointment/model_mixins/next_appointment_crf_model_mixin.py +1 -3
- edc_appointment/modeladmin_mixins/next_appointment_crf_modeladmin_mixin.py +1 -3
- edc_appointment/modelform_mixins/next_appointment_crf_modelform_mixins.py +1 -5
- edc_appointment/models/signals.py +5 -17
- edc_appointment/utils.py +11 -33
- edc_appointment/view_mixins/appointment_view_mixin.py +2 -6
- edc_auth/admin/list_filters.py +2 -6
- edc_auth/admin/role_admin.py +1 -3
- edc_auth/admin/user_admin.py +4 -12
- edc_auth/admin/user_profile_admin.py +2 -5
- edc_auth/auth_updater/auth_updater.py +1 -3
- edc_auth/auth_updater/group_updater.py +3 -9
- edc_auth/forms.py +1 -3
- edc_auth/get_app_codenames.py +1 -3
- edc_auth/import_users.py +3 -9
- edc_auth/management/commands/export_users.py +1 -3
- edc_auth/management/commands/reset_password.py +1 -3
- edc_auth/migrations/0001_squashed_0033_alter_userprofile_is_multisite_viewer.py +4 -12
- edc_auth/migrations/0015_auto_20191026_2149.py +1 -3
- edc_auth/migrations/0016_auto_20191026_2153.py +1 -3
- edc_auth/migrations/0025_permissions.py +1 -1
- edc_auth/migrations/0029_alter_edcpermissions_device_created_and_more.py +5 -13
- edc_auth/models/__init__.py +1 -3
- edc_auth/models/signals.py +2 -6
- edc_auth/models/user_profile.py +1 -3
- edc_auth/password_setter.py +1 -3
- edc_auth/system_checks.py +1 -5
- edc_auth/urls_for_accounts.py +1 -3
- edc_auth/utils.py +3 -9
- edc_consent/actions.py +3 -9
- edc_consent/consent_definition.py +2 -6
- edc_consent/consent_definition_extension.py +4 -12
- edc_consent/field_mixins/citizen_fields_mixin.py +2 -4
- edc_consent/field_mixins/identity_fields_mixin.py +1 -2
- edc_consent/field_mixins/personal_fields_mixin.py +8 -3
- edc_consent/field_mixins/site_fields_mixin.py +1 -2
- edc_consent/form_validators/subject_consent_form_validator.py +2 -7
- edc_consent/migrations/0001_initial.py +1 -1
- edc_consent/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_consent/model_mixins/consent_extension_model_mixin.py +1 -3
- edc_consent/model_mixins/consent_model_mixin.py +3 -9
- edc_consent/modeladmin_mixins/consent_model_admin_mixin.py +7 -17
- edc_consent/modelform_mixins/consent_modelform_mixin/consent_modelform_validation_mixin.py +3 -8
- edc_consent/modelform_mixins/requires_consent_modelform_mixin.py +1 -3
- edc_consent/models/signals.py +2 -6
- edc_consent/site_consents.py +5 -17
- edc_consent/system_checks.py +3 -9
- edc_consent/validators.py +1 -2
- edc_consent/view_mixins/consent_view_mixins.py +3 -5
- edc_crf/crf_form_validator.py +2 -6
- edc_crf/crf_form_validator_mixins.py +2 -6
- edc_crf/migrations/0004_alter_crfstatus_device_created_and_more.py +3 -7
- edc_crf/utils.py +1 -3
- edc_dashboard/management/commands/update_search_slugs.py +1 -3
- edc_dashboard/migrations/0001_initial.py +1 -1
- edc_dashboard/migrations/0003_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_dashboard/templatetags/edc_dashboard_extras.py +2 -6
- edc_dashboard/view_mixins/administration_view_mixin.py +1 -3
- edc_dashboard/view_mixins/edc_view_mixin.py +1 -3
- edc_dashboard/views/administration_view.py +1 -3
- edc_data_manager/action_items.py +1 -3
- edc_data_manager/admin/actions.py +3 -9
- edc_data_manager/admin/data_query_admin.py +4 -12
- edc_data_manager/admin/query_rule_admin.py +4 -13
- edc_data_manager/auths.py +1 -3
- edc_data_manager/forms/data_query.py +2 -6
- edc_data_manager/forms/query_rule.py +1 -3
- edc_data_manager/get_longitudinal_value.py +2 -5
- edc_data_manager/handlers/handlers.py +2 -6
- edc_data_manager/migrations/0001_initial.py +4 -3
- edc_data_manager/migrations/0003_auto_20190806_1749.py +2 -6
- edc_data_manager/migrations/0004_auto_20190806_1750.py +1 -3
- edc_data_manager/migrations/0025_edcpermissions.py +1 -1
- edc_data_manager/migrations/0027_alter_dataquery_dm_user.py +1 -1
- edc_data_manager/migrations/0028_alter_dataquery_options_alter_queryrule_options_and_more.py +2 -1
- edc_data_manager/migrations/0029_alter_dataquery_managers.py +2 -1
- edc_data_manager/migrations/0030_alter_datadictionary_device_created_and_more.py +15 -43
- edc_data_manager/models/model_mixins.py +1 -3
- edc_data_manager/populate_data_dictionary.py +1 -2
- edc_data_manager/post_migrate_signals.py +1 -3
- edc_data_manager/site_data_manager.py +1 -3
- edc_document_status/model_mixins.py +1 -3
- edc_egfr/__init__.py +1 -0
- edc_egfr/admin/__init__.py +1 -0
- edc_egfr/admin/egfr_drop_notification_admin_mixin.py +73 -0
- edc_egfr/apps.py +5 -0
- edc_egfr/calculators/__init__.py +4 -0
- edc_egfr/calculators/base_egrfr.py +56 -0
- edc_egfr/calculators/egfr_ckd_epi.py +68 -0
- edc_egfr/calculators/egfr_cockcroft_gault.py +63 -0
- edc_egfr/calculators/percent_change.py +7 -0
- edc_egfr/constants.py +1 -0
- edc_egfr/egfr.py +237 -0
- edc_egfr/form_validator_mixins/__init__.py +4 -0
- edc_egfr/form_validator_mixins/egfr_form_validator_mixins.py +55 -0
- edc_egfr/get_drop_notification_model.py +10 -0
- edc_egfr/get_egfr_for_subject.py +31 -0
- edc_egfr/model_mixins/__init__.py +2 -0
- edc_egfr/model_mixins/egfr_drop_notification_model_mixin.py +63 -0
- edc_egfr/model_mixins/egfr_model_mixin.py +120 -0
- edc_export/archive_exporter.py +2 -6
- edc_export/exportables.py +2 -6
- edc_export/files_emailer.py +1 -3
- edc_export/management/commands/import_receipts.py +1 -3
- edc_export/managers.py +3 -9
- edc_export/migrations/0001_initial.py +15 -36
- edc_export/migrations/0005_exportdata_importdata.py +1 -3
- edc_export/migrations/0006_auto_20200512_0208.py +2 -6
- edc_export/migrations/0010_auto_20210910_1636.py +2 -6
- edc_export/migrations/0013_edcpermissions.py +1 -1
- edc_export/migrations/0015_alter_datarequest_managers_and_more.py +2 -1
- edc_export/migrations/0016_alter_datarequest_device_created_and_more.py +27 -79
- edc_export/migrations/0017_alter_datarequest_options_and_more.py +2 -6
- edc_export/migrations/0020_remove_datarequesthistory_edc_export__exporte_ba8050_idx_and_more.py +2 -6
- edc_export/model_exporter/model_exporter.py +4 -15
- edc_export/model_exporter/object_history_helpers.py +1 -3
- edc_export/model_exporter/value_getter.py +5 -14
- edc_export/models/signals.py +1 -3
- edc_export/models/upload_export_receipt_file.py +1 -3
- edc_export/utils.py +1 -4
- edc_export/views/export_selected_models_view.py +6 -17
- edc_facility/default_definitions.py +1 -3
- edc_facility/facility.py +4 -14
- edc_facility/import_holidays.py +1 -3
- edc_facility/migrations/0005_healthfacility_healthfacilitytypes_and_more.py +4 -6
- edc_facility/migrations/0006_alter_healthfacility_health_facility_type.py +1 -1
- edc_facility/migrations/0008_alter_healthfacility_device_created_and_more.py +5 -13
- edc_facility/models/holiday.py +1 -3
- edc_facility/utils.py +1 -3
- edc_fieldsets/fieldsets_modeladmin_mixin.py +1 -3
- edc_form_describer/form_describer.py +3 -9
- edc_form_describer/make_forms_reference.py +1 -3
- edc_form_describer/management/commands/make_forms_reference.py +1 -3
- edc_form_runners/admin/issue_admin.py +2 -6
- edc_form_runners/form_runner.py +4 -13
- edc_form_runners/form_runner_by_scr_id.py +1 -3
- edc_form_runners/get_form_runner.py +1 -3
- edc_form_runners/get_form_runner_by_src_id.py +3 -3
- edc_form_runners/management/commands/run_form_runners.py +1 -3
- edc_form_runners/migrations/0001_initial.py +2 -4
- edc_form_runners/run_form_runners.py +1 -3
- edc_form_runners/utils.py +1 -3
- edc_form_validators/applicable_field_validator.py +6 -17
- edc_form_validators/base_form_validator.py +1 -3
- edc_form_validators/date_range_validator.py +4 -12
- edc_form_validators/date_validator.py +3 -9
- edc_form_validators/many_to_many_field_validator.py +1 -3
- edc_form_validators/other_specify_field_validator.py +3 -7
- edc_form_validators/range_field_validator.py +1 -3
- edc_form_validators/required_field_validator.py +5 -18
- edc_glucose/__init__.py +0 -0
- edc_glucose/apps.py +6 -0
- edc_glucose/constants.py +3 -0
- edc_glucose/fieldsets.py +14 -0
- edc_glucose/form_validators/__init__.py +6 -0
- edc_glucose/form_validators/fasting_form_validator.py +12 -0
- edc_glucose/form_validators/fbg_form_validator_mixin.py +32 -0
- edc_glucose/form_validators/fbg_ogtt_form_validator_mixin.py +47 -0
- edc_glucose/form_validators/glucose_form_validator.py +44 -0
- edc_glucose/form_validators/glucose_form_validator_mixin.py +53 -0
- edc_glucose/form_validators/ogtt_form_validator_mixin.py +91 -0
- edc_glucose/list_filters.py +42 -0
- edc_glucose/migrations/__init__.py +0 -0
- edc_glucose/model_mixin_factories/__init__.py +4 -0
- edc_glucose/model_mixin_factories/fasting_model_mixin_factory.py +63 -0
- edc_glucose/model_mixin_factories/fbg_model_mixin_factory.py +48 -0
- edc_glucose/model_mixin_factories/glucose_model_mixin_factory.py +49 -0
- edc_glucose/model_mixin_factories/ogtt_model_mixin_factory.py +71 -0
- edc_glucose/model_mixins/__init__.py +5 -0
- edc_glucose/model_mixins/fasting_model_mixin.py +15 -0
- edc_glucose/model_mixins/fbg_model_mixin.py +10 -0
- edc_glucose/model_mixins/glucose_model_mixin.py +17 -0
- edc_glucose/model_mixins/hba1c_model_mixin.py +42 -0
- edc_glucose/model_mixins/ogtt_model_mixin.py +10 -0
- edc_glucose/models.py +0 -0
- edc_glucose/utils.py +42 -0
- edc_identifier/admin_site.py +1 -3
- edc_identifier/identifier.py +1 -3
- edc_identifier/migrations/0001_initial.py +3 -4
- edc_identifier/migrations/0001_squashed_0018_auto_20180128_1054.py +3 -2
- edc_identifier/migrations/0005_alter_identifiermodel_managers.py +2 -1
- edc_identifier/migrations/0005_historicalidentifierhistory_historicalidentifiertracker_historicalsubjectidentifier.py +4 -5
- edc_identifier/migrations/0006_auto_20161127_2226.py +16 -43
- edc_identifier/migrations/0007_alter_identifiermodel_device_created_and_more.py +3 -7
- edc_identifier/migrations/0007_auto_20161204_2227.py +4 -7
- edc_identifier/migrations/0009_auto_20161221_2323.py +1 -0
- edc_identifier/migrations/0010_auto_20170112_0602.py +2 -1
- edc_identifier/migrations/0012_auto_20171116_1606.py +2 -1
- edc_identifier/migrations/0013_auto_20171230_1316.py +3 -9
- edc_identifier/research_identifier.py +3 -11
- edc_identifier/short_identifier.py +5 -9
- edc_identifier/utils.py +1 -3
- edc_lab/admin/modeladmin_mixins.py +2 -8
- edc_lab/aliquot_types.py +1 -3
- edc_lab/form_validators/requisition_form_validator_mixin.py +1 -3
- edc_lab/forms/box_type_form.py +4 -6
- edc_lab/lab/aliquot_type.py +2 -6
- edc_lab/lab/manifest.py +2 -6
- edc_lab/lab/primary_aliquot.py +1 -3
- edc_lab/lab/requisition_panel.py +1 -3
- edc_lab/lab/requisition_panel_group.py +2 -6
- edc_lab/lab/specimen.py +1 -3
- edc_lab/labels/aliquot_label.py +4 -6
- edc_lab/labels/manifest_label.py +1 -3
- edc_lab/migrations/0001_initial.py +12 -29
- edc_lab/migrations/0002_auto_20170305_1939.py +4 -12
- edc_lab/migrations/0007_auto_20170321_1119.py +2 -6
- edc_lab/migrations/0008_auto_20170921_0719.py +2 -1
- edc_lab/migrations/0010_auto_20171127_1541.py +3 -2
- edc_lab/migrations/0012_auto_20180114_1438.py +2 -1
- edc_lab/migrations/0013_auto_20180117_1438.py +2 -1
- edc_lab/migrations/0022_auto_20211210_1839.py +1 -0
- edc_lab/migrations/0024_alter_manifestitem_managers.py +2 -1
- edc_lab/migrations/0027_alter_aliquot_managers_alter_box_managers_and_more.py +1 -1
- edc_lab/migrations/0028_alter_aliquot_device_created_and_more.py +43 -127
- edc_lab/model_mixins/aliquot/aliquot_label_mixin.py +1 -3
- edc_lab/model_mixins/aliquot/aliquot_model_mixin.py +4 -12
- edc_lab/model_mixins/requisition/requisition_identifier_mixin.py +1 -3
- edc_lab/model_mixins/shipping/manifest_model_mixin.py +1 -3
- edc_lab/models/box_item.py +1 -3
- edc_lab/models/box_type.py +1 -3
- edc_lab/models/manifest/manifest.py +3 -9
- edc_lab/models/manifest/manifest_item.py +1 -3
- edc_lab/models/order.py +1 -3
- edc_lab/models/signals.py +1 -3
- edc_lab/patterns.py +1 -3
- edc_lab/pdf_reports/manifest_pdf_report.py +9 -27
- edc_lab/post_migrate_signals.py +1 -3
- edc_lab/site_labs.py +4 -10
- edc_lab_dashboard/migrations/0001_initial.py +1 -1
- edc_lab_dashboard/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_lab_dashboard/view_mixins/box_view_mixin.py +1 -3
- edc_lab_dashboard/view_mixins/manifest_view_mixin.py +4 -12
- edc_lab_dashboard/views/action_views/receive_view.py +1 -3
- edc_lab_dashboard/views/action_views/verify_box_item_view.py +1 -3
- edc_lab_dashboard/views/listboard_filters/aliquot_listboard_view_filters.py +2 -6
- edc_lab_dashboard/views/listboard_filters/manifest_listboard_filters.py +1 -3
- edc_lab_dashboard/views/listboard_views/base_box_item_listboard_view.py +1 -3
- edc_lab_dashboard/views/listboard_views/manifest_listboard_view.py +1 -3
- edc_lab_dashboard/views/listboard_views/process_listboard_view.py +2 -6
- edc_lab_dashboard/views/listboard_views/receive_listboard_view.py +2 -6
- edc_lab_dashboard/views/listboard_views/requisition_listboard_view.py +2 -6
- edc_lab_results/action_items.py +1 -3
- edc_lab_results/form_validator_mixins/blood_results_fbg_form_validator_mixin.py +2 -4
- edc_lab_results/form_validator_mixins/blood_results_form_validator_mixin.py +1 -3
- edc_lab_results/get_summary.py +3 -5
- edc_lab_results/model_mixin_factories/__init__.py +10 -0
- edc_lab_results/{model_mixin_factory → model_mixin_factories}/field_attrs.py +8 -8
- edc_lab_results/{model_mixin_factory → model_mixin_factories}/reportable_result_model_mixin_factory.py +2 -0
- edc_lab_results/{model_mixin_factory → model_mixin_factories}/result_model_mixin_factory.py +2 -0
- edc_lab_results/model_mixins/blood_result_model_mixin.py +2 -5
- edc_lab_results/model_mixins/electrolytes_model_mixins.py +1 -1
- edc_lab_results/model_mixins/fbc_model_mixins.py +1 -1
- edc_lab_results/model_mixins/fbg_model_mixin.py +6 -3
- edc_lab_results/model_mixins/glucose_model_mixin.py +2 -2
- edc_lab_results/model_mixins/hba1c_model_mixin.py +2 -28
- edc_lab_results/model_mixins/insulin_model_mixin.py +4 -11
- edc_lab_results/model_mixins/lft_model_mixins.py +1 -1
- edc_lab_results/model_mixins/lipid_model_mixins.py +1 -1
- edc_lab_results/model_mixins/proteinuria_model_mixin.py +1 -1
- edc_lab_results/model_mixins/rft_model_mixins.py +1 -1
- edc_label/apps.py +1 -2
- edc_label/migrations/0001_initial.py +1 -1
- edc_label/migrations/0003_alter_zpllabeltemplates_device_created_and_more.py +3 -7
- edc_label/printer.py +2 -6
- edc_label/printers_mixin.py +1 -3
- edc_label/urls.py +1 -3
- edc_label/view_mixins.py +1 -3
- edc_label/views/print_label_view.py +1 -3
- edc_list_data/model_mixins.py +1 -3
- edc_list_data/preload_data.py +2 -6
- edc_list_data/site_list_data.py +1 -3
- edc_listboard/migrations/0001_initial.py +1 -1
- edc_listboard/migrations/0003_alter_listboard_device_created_and_more.py +3 -7
- edc_listboard/view_mixins/listboard_filter_view_mixin.py +5 -15
- edc_listboard/view_mixins/search_listboard_view_mixin.py +2 -6
- edc_listboard/views/listboard_view.py +2 -6
- edc_listboard/views/screen/screening_listboard_view.py +1 -3
- edc_listboard/views/subject/subject_listboard_view.py +1 -3
- edc_locator/forms/subject_locator_form_validator.py +4 -12
- edc_locator/migrations/0001_initial.py +3 -2
- edc_locator/migrations/0003_auto_20180103_1351.py +2 -1
- edc_locator/migrations/0004_auto_20180106_2148.py +2 -1
- edc_locator/migrations/0007_auto_20180117_1819.py +2 -1
- edc_locator/migrations/0011_auto_20181007_0053.py +1 -1
- edc_locator/migrations/0013_auto_20181007_0054.py +2 -3
- edc_locator/migrations/0014_auto_20181009_0545.py +1 -0
- edc_locator/migrations/0032_alter_subjectlocator_managers.py +1 -1
- edc_locator/migrations/0034_alter_historicalsubjectlocator_device_created_and_more.py +5 -13
- edc_locator/modeladmin_mixins.py +1 -3
- edc_locator/view_mixins/subject_locator_view_mixins.py +1 -3
- edc_ltfu/admin.py +1 -3
- edc_ltfu/forms/ltfu_form.py +1 -3
- edc_ltfu/forms/ltfu_form_validator_mixin.py +1 -2
- edc_ltfu/modelform_mixins.py +3 -8
- edc_metadata/admin/modeladmin_mixins.py +2 -8
- edc_metadata/management/commands/validate_entry_status.py +1 -3
- edc_metadata/metadata/metadata.py +12 -41
- edc_metadata/metadata/metadata_getter.py +2 -9
- edc_metadata/metadata/requisition_metadata_getter.py +1 -3
- edc_metadata/metadata_handler.py +3 -9
- edc_metadata/metadata_helper/metadata_helper_mixin.py +1 -3
- edc_metadata/metadata_mixins/source_model_metadata_mixin.py +3 -9
- edc_metadata/metadata_refresher.py +3 -9
- edc_metadata/metadata_rules/crf/crf_rule_group.py +2 -5
- edc_metadata/metadata_rules/persistant_singleton_mixin.py +3 -3
- edc_metadata/metadata_rules/requisition/requisition_rule_group.py +1 -2
- edc_metadata/metadata_rules/rule_evaluator.py +1 -3
- edc_metadata/metadata_rules/rule_group.py +2 -6
- edc_metadata/metadata_rules/rule_group_meta_options.py +1 -3
- edc_metadata/metadata_updater.py +1 -3
- edc_metadata/metadata_wrappers/metadata_wrapper.py +1 -3
- edc_metadata/migrations/0001_initial.py +2 -1
- edc_metadata/migrations/0002_auto_20161127_2226.py +6 -13
- edc_metadata/migrations/0005_auto_20170112_0602.py +2 -1
- edc_metadata/migrations/0007_auto_20170810_1032.py +2 -1
- edc_metadata/migrations/0009_auto_20180116_1528.py +2 -1
- edc_metadata/migrations/0014_auto_20190707_0002.py +1 -1
- edc_metadata/migrations/0015_auto_20190709_0009.py +3 -5
- edc_metadata/migrations/0021_alter_crfmetadata_managers_and_more.py +1 -1
- edc_metadata/migrations/0023_alter_crfmetadata_device_created_and_more.py +5 -13
- edc_metadata/model_mixins/creates/creates_metadata_model_mixin.py +1 -3
- edc_metadata/model_mixins/updates/updates_metadata_model_mixin.py +1 -3
- edc_metadata/models/crf_metadata_model_mixin.py +2 -6
- edc_metadata/next_form_getter.py +1 -3
- edc_metadata/requisition/requisition_metadata_handler.py +3 -2
- edc_metadata/requisition/requisition_metadata_updater.py +1 -3
- edc_metadata/update_metadata_on_schedule_change.py +7 -14
- edc_model/models/fields/initials_field.py +1 -3
- edc_model/models/signals.py +1 -3
- edc_model/system_checks.py +1 -3
- edc_model/validators/duration.py +1 -3
- edc_model_admin/admin_site.py +1 -3
- edc_model_admin/changelist_buttons/model_admin_changelist_button_mixin.py +4 -12
- edc_model_admin/changelist_buttons/model_admin_changelist_model_button_mixin.py +1 -3
- edc_model_admin/dashboard/model_admin_crf_dashboard_mixin.py +1 -3
- edc_model_admin/dashboard/model_admin_dashboard_mixin.py +1 -3
- edc_model_admin/mixins/base_model_admin_redirect_mixin.py +2 -6
- edc_model_admin/mixins/inlines/limited_admin_inline_mixin.py +1 -3
- edc_model_admin/mixins/model_admin_bypass_default_form_cls_mixin.py +4 -12
- edc_model_admin/mixins/model_admin_form_auto_number_mixin.py +2 -6
- edc_model_admin/mixins/model_admin_form_instructions_mixin.py +2 -6
- edc_model_admin/mixins/model_admin_next_url_redirect_mixin.py +3 -9
- edc_model_admin/mixins/model_admin_protect_pii_mixin.py +1 -3
- edc_model_admin/mixins/model_admin_redirect_all_to_changelist_mixin.py +2 -6
- edc_model_admin/mixins/model_admin_redirect_on_delete_mixin.py +1 -3
- edc_model_admin/templatetags/edc_admin_modify.py +3 -9
- edc_model_fields/fields/initials_field.py +1 -3
- edc_model_form/mixins/inline_model_form_mixin.py +5 -9
- edc_model_to_dataframe/model_to_dataframe.py +15 -46
- edc_navbar/get_default_navbar.py +1 -3
- edc_navbar/migrations/0004_auto_20220825_0451.py +1 -1
- edc_navbar/migrations/0006_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_navbar/navbar.py +1 -3
- edc_navbar/navbar_item.py +1 -3
- edc_navbar/site_navbars.py +2 -6
- edc_navbar/templatetags/edc_navbar_extras.py +1 -3
- edc_notification/admin_site.py +1 -3
- edc_notification/mailing_list_manager.py +5 -15
- edc_notification/migrations/0001_initial.py +2 -1
- edc_notification/migrations/0008_alter_notification_device_created_and_more.py +3 -7
- edc_notification/modeladmin_mixins.py +1 -3
- edc_notification/models/notification.py +1 -3
- edc_notification/models/signals.py +3 -10
- edc_notification/notification/model_notification.py +3 -9
- edc_notification/notification/notification.py +4 -12
- edc_notification/site_notifications.py +5 -14
- edc_offstudy/migrations/0001_initial.py +2 -1
- edc_offstudy/migrations/0002_auto_20180921_0434.py +4 -3
- edc_offstudy/migrations/0008_auto_20191102_0033.py +2 -1
- edc_offstudy/migrations/0015_auto_20220925_0032.py +1 -1
- edc_offstudy/migrations/0016_auto_20220929_1742.py +1 -0
- edc_offstudy/migrations/0018_alter_subjectoffstudy_managers.py +2 -1
- edc_offstudy/migrations/0019_alter_historicalsubjectoffstudy_device_created_and_more.py +5 -13
- edc_offstudy/model_mixins/offstudy_model_mixin.py +3 -3
- edc_offstudy/modelform_mixins/crf/offstudy_crf_modelform_mixin.py +2 -6
- edc_offstudy/templatetags/edc_offstudy_extras.py +2 -6
- edc_offstudy/utils.py +1 -3
- edc_pdf_reports/admin/modeladmin_mixins.py +1 -3
- edc_pdf_reports/crf_pdf_report.py +3 -9
- edc_pdf_reports/flowables/textbox.py +1 -3
- edc_pdf_reports/report.py +6 -18
- edc_pdf_reports/utils.py +1 -3
- edc_pdf_reports/views/pdf_intermediate_view.py +1 -3
- edc_pdf_reports/views/print_pdf_report_view.py +2 -6
- edc_pdutils/actions.py +4 -12
- edc_pdutils/choices.py +1 -4
- edc_pdutils/database.py +1 -3
- edc_pdutils/df_exporters/csv_crf_inline_tables_exporter.py +4 -12
- edc_pdutils/df_exporters/csv_exporter.py +7 -22
- edc_pdutils/df_handlers/crf_df_handler.py +3 -9
- edc_pdutils/df_handlers/df_handler.py +1 -3
- edc_pdutils/df_handlers/registered_subject_df_handler.py +1 -3
- edc_pdutils/management/commands/export_models.py +2 -6
- edc_pdutils/migrations/0001_initial.py +6 -9
- edc_pdutils/site.py +2 -6
- edc_pdutils/site_values_mappings.py +3 -9
- edc_pdutils/tables/aliquot.py +2 -9
- edc_pdutils/tables/consent.py +2 -6
- edc_pdutils/tables/crf.py +4 -12
- edc_pdutils/tables/requisition.py +4 -12
- edc_pdutils/tables/visit.py +1 -3
- edc_pdutils/utils/convert_dates_from_model.py +3 -9
- edc_pdutils/utils/convert_numerics_from_model.py +1 -3
- edc_pdutils/utils/convert_timedelta_from_model.py +1 -3
- edc_pdutils/utils/missing_subject_identifiers.py +1 -3
- edc_pharmacy/admin/actions/confirm_stock.py +2 -6
- edc_pharmacy/admin/actions/delete_order_items.py +1 -3
- edc_pharmacy/admin/actions/delete_receive_items.py +1 -3
- edc_pharmacy/admin/actions/print_stock_report.py +1 -3
- edc_pharmacy/admin/list_filters.py +5 -17
- edc_pharmacy/admin/model_admin_mixin.py +1 -3
- edc_pharmacy/admin/prescription/rx_admin.py +2 -6
- edc_pharmacy/admin/prescription/rx_refill_admin.py +1 -3
- edc_pharmacy/admin/reports/stock_availability_admin.py +1 -5
- edc_pharmacy/admin/stock/allocation_admin.py +5 -15
- edc_pharmacy/admin/stock/allocation_proxy_admin.py +1 -3
- edc_pharmacy/admin/stock/confirmation_admin.py +1 -3
- edc_pharmacy/admin/stock/confirmation_at_site_admin.py +4 -12
- edc_pharmacy/admin/stock/confirmation_at_site_item_admin.py +5 -17
- edc_pharmacy/admin/stock/dispense_admin.py +3 -11
- edc_pharmacy/admin/stock/dispense_item_admin.py +4 -14
- edc_pharmacy/admin/stock/order_admin.py +1 -3
- edc_pharmacy/admin/stock/order_item_admin.py +5 -15
- edc_pharmacy/admin/stock/receive_admin.py +4 -12
- edc_pharmacy/admin/stock/receive_item_admin.py +4 -12
- edc_pharmacy/admin/stock/repack_request_admin.py +2 -6
- edc_pharmacy/admin/stock/stock_adjustment_admin.py +1 -3
- edc_pharmacy/admin/stock/stock_admin.py +8 -24
- edc_pharmacy/admin/stock/stock_proxy_admin.py +1 -5
- edc_pharmacy/admin/stock/stock_request_item_admin.py +5 -15
- edc_pharmacy/admin/stock/stock_transfer_admin.py +4 -12
- edc_pharmacy/admin/stock/stock_transfer_item_admin.py +6 -18
- edc_pharmacy/admin/stock/storage_bin_admin.py +3 -11
- edc_pharmacy/admin/stock/storage_bin_item_admin.py +4 -14
- edc_pharmacy/analytics/dataframes/get_next_scheduled_visit_for_subjects_df.py +3 -9
- edc_pharmacy/analytics/dataframes/in_stock_for_subjects_df.py +2 -6
- edc_pharmacy/analytics/dataframes/stock_for_subjects.py +1 -3
- edc_pharmacy/form_validators/crf/study_medication_form_validator.py +9 -27
- edc_pharmacy/forms/stock/container_form.py +2 -6
- edc_pharmacy/forms/stock/receive_item_form.py +2 -6
- edc_pharmacy/forms/stock/repack_request_form.py +4 -11
- edc_pharmacy/forms/stock/stock_request_form.py +5 -14
- edc_pharmacy/forms/stock/stock_request_item_form.py +1 -3
- edc_pharmacy/labels/draw_bulk_stock_label_code128.py +1 -3
- edc_pharmacy/labels/draw_bulk_stock_label_code39.py +3 -9
- edc_pharmacy/labels/draw_patient_stock_label_code128.py +1 -3
- edc_pharmacy/migrations/0001_initial.py +7 -15
- edc_pharmacy/migrations/0005_alter_rx_managers.py +2 -1
- edc_pharmacy/migrations/0015_auto_20220913_2139.py +9 -22
- edc_pharmacy/migrations/0016_auto_20220929_1742.py +2 -1
- edc_pharmacy/migrations/0018_alter_rxrefill_managers.py +1 -1
- edc_pharmacy/migrations/0020_alter_box_device_created_alter_box_device_modified_and_more.py +71 -211
- edc_pharmacy/migrations/0021_alter_box_options_alter_container_options_and_more.py +1 -1
- edc_pharmacy/migrations/0023_remove_rx_edc_pharmac_modifie_986021_idx_and_more.py +1 -3
- edc_pharmacy/migrations/0024_allocation_assignment_containerunits_dispense_and_more.py +40 -104
- edc_pharmacy/migrations/0031_historicalrepackrequest_task_id_and_more.py +2 -1
- edc_pharmacy/migrations/0033_container_display_name_and_more.py +1 -3
- edc_pharmacy/migrations/0035_container_max_per_subject_and_more.py +2 -6
- edc_pharmacy/migrations/0037_remove_historicalstock_confirmed_at_site_by_and_more.py +2 -6
- edc_pharmacy/migrations/0039_remove_dispense_registered_subject_and_more.py +7 -9
- edc_pharmacy/migrations/0043_stockproxy_alter_historicallot_lot_no_and_more.py +2 -1
- edc_pharmacy/migrations/0049_remove_stocktransferconfirmation_stock_and_more.py +5 -13
- edc_pharmacy/migrations/0050_remove_stocktransferconfirmation2_location_and_more.py +2 -6
- edc_pharmacy/migrations/0051_alter_historicalstocktransferconfirmationitem_options_and_more.py +2 -1
- edc_pharmacy/migrations/0053_alter_location_managers_alter_historicalstock_lot_and_more.py +7 -11
- edc_pharmacy/migrations/0057_scanduplicates.py +3 -4
- edc_pharmacy/migrations/0058_stockrequestproxy_alter_stockproxy_options.py +2 -1
- edc_pharmacy/migrations/0060_alter_container_max_per_subject_and_more.py +8 -14
- edc_pharmacy/migrations/0061_alter_historicalstocktransferconfirmation_options_and_more.py +1 -1
- edc_pharmacy/migrations/0062_auto_20250312_1433.py +2 -6
- edc_pharmacy/migrations/0063_alter_allocation_managers_remove_allocation_site_and_more.py +2 -1
- edc_pharmacy/migrations/0065_allocationproxy.py +2 -1
- edc_pharmacy/migrations/0068_stockout.py +2 -1
- edc_pharmacy/migrations/0076_historicalstockadjustment_stockadjustment.py +5 -8
- edc_pharmacy/migrations/0077_historicalstockadjustment_adjustment_datetime_and_more.py +2 -1
- edc_pharmacy/migrations/0078_alter_historicalstock_qty_and_more.py +2 -1
- edc_pharmacy/migrations/0081_historicalconfirmation_confirmation.py +8 -10
- edc_pharmacy/migrations/0084_confirmationatsiteitem_and_more.py +2 -2
- edc_pharmacy/model_mixins/study_medication_crf_model_mixin.py +3 -9
- edc_pharmacy/models/medication/dosage_guideline.py +1 -3
- edc_pharmacy/models/medication/formulation.py +1 -3
- edc_pharmacy/models/prescription/rx.py +1 -3
- edc_pharmacy/models/prescription/rx_refill.py +2 -6
- edc_pharmacy/models/signals.py +11 -21
- edc_pharmacy/models/stock/allocation.py +3 -9
- edc_pharmacy/models/stock/confirmation.py +1 -3
- edc_pharmacy/models/stock/confirmation_at_site_item.py +1 -3
- edc_pharmacy/models/stock/container.py +1 -3
- edc_pharmacy/models/stock/dispense.py +1 -3
- edc_pharmacy/models/stock/dispense_item.py +1 -3
- edc_pharmacy/models/stock/lot.py +1 -3
- edc_pharmacy/models/stock/order_item.py +2 -6
- edc_pharmacy/models/stock/product.py +2 -6
- edc_pharmacy/models/stock/receive_item.py +4 -12
- edc_pharmacy/models/stock/repack_request.py +1 -3
- edc_pharmacy/models/stock/stock.py +3 -8
- edc_pharmacy/models/stock/stock_request_item.py +4 -4
- edc_pharmacy/models/stock/stock_transfer_item.py +1 -3
- edc_pharmacy/models/stock/supplier.py +1 -3
- edc_pharmacy/models/storage/utils.py +1 -4
- edc_pharmacy/pdf_reports/manifest_pdf_report.py +3 -9
- edc_pharmacy/pdf_reports/stock_pdf_report.py +3 -9
- edc_pharmacy/refill/adjust_previous_end_datetime.py +2 -6
- edc_pharmacy/refill/create_next_refill.py +1 -3
- edc_pharmacy/refill/create_refill.py +1 -3
- edc_pharmacy/refill/refill_creator.py +2 -6
- edc_pharmacy/sample_usb_printing/network_printers.py +1 -3
- edc_pharmacy/settings.py +3 -9
- edc_pharmacy/urls.py +1 -3
- edc_pharmacy/utils/allocate_stock.py +1 -3
- edc_pharmacy/utils/confirm_stock_at_site.py +3 -5
- edc_pharmacy/utils/dispense.py +1 -4
- edc_pharmacy/utils/get_unit_qty_out.py +1 -3
- edc_pharmacy/utils/process_repack_request.py +1 -3
- edc_pharmacy/utils/process_repack_request_queryset.py +1 -3
- edc_pharmacy/utils/stock_request/bulk_create_stock_request_items.py +2 -6
- edc_pharmacy/utils/stock_request/get_instock_and_nostock_data.py +3 -8
- edc_pharmacy/utils/transfer_stock.py +1 -3
- edc_pharmacy/utils/update_previous_refill_end_datetime.py +1 -3
- edc_pharmacy/views/add_to_storage_bin_view.py +2 -6
- edc_pharmacy/views/allocate_to_subject_view.py +7 -21
- edc_pharmacy/views/confirm_stock_from_instance_view.py +2 -6
- edc_pharmacy/views/confirm_stock_from_queryset_view.py +2 -7
- edc_pharmacy/views/confirmation_at_site_view.py +10 -31
- edc_pharmacy/views/dispense_view.py +2 -6
- edc_pharmacy/views/move_to_storage_bin_view.py +2 -6
- edc_pharmacy/views/prepare_and_review_stock_request_view.py +3 -9
- edc_pharmacy/views/print_labels_view.py +1 -3
- edc_pharmacy/views/print_stock_transfer_manifest_view.py +1 -3
- edc_pharmacy/views/transfer_stock_view.py +1 -3
- edc_prn/modelform_mixins.py +1 -3
- edc_prn/prn.py +2 -6
- edc_prn/templatetags/edc_prn_extras.py +4 -8
- edc_protocol/research_protocol_config.py +2 -5
- edc_protocol_incident/admin/protocol_deviation_violation_admin.py +1 -3
- edc_protocol_incident/auth_objects.py +1 -3
- edc_protocol_incident/auths.py +1 -3
- edc_protocol_incident/form_validators/mixins.py +3 -9
- edc_protocol_incident/form_validators/protocol_deviation_violation_form_validator.py +6 -18
- edc_protocol_incident/form_validators/protocol_incident_form_validator.py +3 -8
- edc_protocol_incident/migrations/0001_initial.py +4 -3
- edc_protocol_incident/migrations/0001_squashed_0015_auto_20220927_0401.py +7 -12
- edc_protocol_incident/migrations/0005_protocolincident_historicalprotocolincident_and_more.py +4 -3
- edc_protocol_incident/migrations/0012_auto_20220913_2139.py +3 -9
- edc_protocol_incident/migrations/0020_alter_historicalprotocoldeviationviolation_device_created_and_more.py +9 -25
- edc_protocol_incident/model_mixins/protocol_deviation_violation_model_mixin.py +3 -7
- edc_protocol_incident/model_mixins/protocol_incident_model_mixin.py +1 -3
- edc_protocol_incident/urls.py +1 -3
- edc_pylabels/actions.py +2 -6
- edc_pylabels/admin/label_configuration_admin.py +4 -4
- edc_pylabels/drawing_callable_example.py +1 -3
- edc_pylabels/migrations/0001_initial.py +1 -3
- edc_pylabels/migrations/0002_alter_label_options_label_created_and_more.py +2 -6
- edc_pylabels/migrations/0005_labelconfiguration_delete_label_and_more.py +1 -3
- edc_pylabels/models/label_configuration.py +1 -3
- edc_qareports/migrations/0001_initial.py +3 -4
- edc_qareports/migrations/0005_edcpermissions.py +2 -4
- edc_qareports/migrations/0006_qareportlog.py +2 -1
- edc_qareports/migrations/0007_qareportlog_edc_qarepor_accesse_738ffe_idx.py +1 -3
- edc_qareports/migrations/0017_auto_20240816_0256.py +1 -0
- edc_qareports/model_mixins/note_model_mixin.py +1 -3
- edc_qareports/modeladmin_mixins/list_filters.py +8 -12
- edc_qareports/modeladmin_mixins/note_modeladmin_mixin.py +1 -3
- edc_qareports/modeladmin_mixins/on_study_missing_values_modeladmin_mixin.py +2 -6
- edc_qareports/modeladmin_mixins/qa_report_modeladmin_mixin.py +1 -3
- edc_qareports/sql_generator/crf_case.py +1 -5
- edc_qareports/sql_generator/sql_view_generator.py +1 -3
- edc_qareports/utils.py +2 -6
- edc_randomization/admin.py +1 -3
- edc_randomization/auths.py +2 -6
- edc_randomization/blinding.py +1 -3
- edc_randomization/migrations/0001_initial.py +3 -4
- edc_randomization/migrations/0009_edcpermissions.py +1 -1
- edc_randomization/migrations/0011_alter_edcpermissions_device_created_and_more.py +7 -19
- edc_randomization/model_mixins.py +2 -5
- edc_randomization/randomization_list_importer.py +3 -7
- edc_randomization/randomization_list_verifier.py +2 -7
- edc_randomization/randomizer.py +2 -6
- edc_randomization/site_randomizers.py +1 -3
- edc_randomization/system_checks.py +1 -3
- edc_randomization/utils.py +2 -6
- edc_refusal/admin.py +1 -3
- edc_refusal/forms.py +1 -2
- edc_refusal/migrations/0001_initial.py +2 -1
- edc_refusal/migrations/0002_historicalsubjectrefusal.py +6 -4
- edc_refusal/migrations/0004_refusalreasons_plural_name.py +1 -3
- edc_refusal/migrations/0005_alter_subjectrefusal_options_and_more.py +2 -1
- edc_refusal/migrations/0006_alter_subjectrefusal_managers.py +2 -1
- edc_refusal/migrations/0008_alter_historicalsubjectrefusal_device_created_and_more.py +5 -13
- edc_registration/admin_site.py +1 -3
- edc_registration/migrations/0001_initial.py +3 -4
- edc_registration/migrations/0002_auto_20161127_2226.py +4 -7
- edc_registration/migrations/0004_auto_20161221_0018.py +2 -1
- edc_registration/migrations/0005_auto_20170111_1809.py +2 -1
- edc_registration/migrations/0008_auto_20170810_1032.py +2 -1
- edc_registration/migrations/0012_auto_20180116_1528.py +2 -1
- edc_registration/migrations/0015_auto_20181006_2257.py +1 -1
- edc_registration/migrations/0016_historicalregisteredsubject.py +5 -6
- edc_registration/migrations/0026_historicalregisteredsubject_familiar_name_and_more.py +1 -1
- edc_registration/migrations/0028_alter_registeredsubject_managers.py +1 -1
- edc_registration/migrations/0029_alter_historicalregisteredsubject_device_created_and_more.py +5 -13
- edc_registration/modeladmin_mixins.py +1 -3
- edc_registration/models/registered_subject.py +4 -11
- edc_registration/utils.py +1 -3
- edc_reportable/admin_site.py +1 -3
- edc_reportable/data/normal_data/africa.py +4 -14
- edc_reportable/evaluator.py +2 -6
- edc_reportable/formula.py +2 -6
- edc_reportable/management/commands/export_reportables.py +1 -3
- edc_reportable/migrations/0001_initial.py +3 -9
- edc_reportable/migrations/0003_referencerangecollection_grade1_and_more.py +3 -9
- edc_reportable/migrations/0004_alter_referencerangecollection_grade3_and_more.py +4 -7
- edc_reportable/migrations/0006_alter_gradingdata_revision_and_more.py +8 -19
- edc_reportable/models/mw.py +1 -3
- edc_reportable/models/reference_model_mixins.py +1 -3
- edc_reportable/models/reference_range_collection.py +3 -9
- edc_reportable/post_migrate_signals.py +1 -3
- edc_reportable/reference_range_evaluator.py +4 -11
- edc_reportable/utils/convert_units.py +1 -3
- edc_reportable/utils/get_grade_for_value.py +3 -1
- edc_reportable/utils/get_reference_range_collection.py +2 -2
- edc_reportable/utils/load_data.py +1 -3
- edc_reportable/utils/update_grading_data.py +2 -6
- edc_review_dashboard/migrations/0001_initial.py +1 -1
- edc_review_dashboard/migrations/0003_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_review_dashboard/views/subject_review_listboard_view.py +1 -3
- edc_screening/eligibility.py +1 -3
- edc_screening/fc.py +1 -3
- edc_screening/migrations/0001_initial.py +1 -1
- edc_screening/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_screening/model_mixins/eligibility_model_mixin.py +1 -3
- edc_screening/model_mixins/screening_fields_model_mixin.py +2 -0
- edc_screening/modelform_mixins.py +1 -3
- edc_search/search_slug.py +2 -6
- edc_search/updater.py +2 -5
- edc_sites/admin/site_model_admin_mixin.py +4 -12
- edc_sites/management/commands/sync_sites.py +1 -3
- edc_sites/migrations/0007_edcpermissions.py +2 -4
- edc_sites/single_site/get_languages.py +1 -3
- edc_sites/site.py +4 -11
- edc_sites/system_checks.py +1 -4
- edc_sites/utils/add_or_update_django_sites.py +1 -3
- edc_subject_dashboard/migrations/0001_initial.py +1 -1
- edc_subject_dashboard/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
- edc_subject_dashboard/requisition_labels.py +1 -3
- edc_subject_dashboard/requisition_report.py +5 -15
- edc_subject_dashboard/requisition_verifier.py +2 -7
- edc_subject_dashboard/templatetags/edc_subject_dashboard_extras.py +2 -6
- edc_subject_dashboard/view_mixins/subject_visit_view_mixin.py +1 -2
- edc_subject_dashboard/view_utils/crf_button.py +1 -3
- edc_subject_dashboard/view_utils/subject_consent_listboard_button.py +1 -3
- edc_subject_dashboard/view_utils/timepoint_status_button.py +1 -3
- edc_subject_dashboard/views/requisition_print_actions_view.py +4 -12
- edc_subject_dashboard/views/requisition_verify_actions_view.py +1 -3
- edc_subject_dashboard/views/subject_dashboard_view.py +1 -3
- edc_timepoint/apps.py +1 -3
- edc_timepoint/timepoint.py +1 -3
- edc_timepoint/timepoint_lookup.py +1 -3
- edc_transfer/form_validators.py +4 -6
- edc_transfer/model_mixins.py +1 -3
- edc_transfer/modelform_mixins.py +1 -3
- edc_unblinding/action_items.py +1 -3
- edc_unblinding/admin_site.py +1 -3
- edc_unblinding/migrations/0001_initial.py +6 -4
- edc_unblinding/migrations/0002_auto_20210908_2318.py +1 -1
- edc_unblinding/migrations/0009_alter_unblindingrequest_managers_and_more.py +2 -1
- edc_unblinding/migrations/0010_alter_historicalunblindingrequest_device_created_and_more.py +9 -25
- edc_unblinding/models/unblinding_request.py +1 -3
- edc_unblinding/models/unblinding_review.py +1 -3
- edc_utils/age.py +1 -3
- edc_utils/date.py +1 -3
- edc_utils/paths_for_urlpatterns.py +1 -3
- edc_utils/show_urls.py +1 -3
- edc_utils/text.py +1 -2
- edc_view_utils/model_button.py +5 -13
- edc_view_utils/query_button.py +1 -3
- edc_visit_schedule/admin/subject_schedule_history_admin.py +1 -3
- edc_visit_schedule/baseline.py +1 -3
- edc_visit_schedule/migrations/0001_initial.py +3 -4
- edc_visit_schedule/migrations/0003_historicalvisitschedule_visitschedule.py +1 -3
- edc_visit_schedule/migrations/0004_auto_20190629_1800.py +1 -3
- edc_visit_schedule/migrations/0011_alter_historicalvisitschedule_device_created_and_more.py +7 -19
- edc_visit_schedule/migrations/0012_alter_subjectschedulehistory_managers_and_more.py +2 -1
- edc_visit_schedule/migrations/0015_historicalonschedule_offschedule_onschedule.py +9 -13
- edc_visit_schedule/migrations/0017_alter_onschedule_managers.py +2 -1
- edc_visit_schedule/model_mixins/crf/crf_schedule_model_mixin.py +1 -1
- edc_visit_schedule/model_mixins/off_schedule_model_mixin.py +2 -6
- edc_visit_schedule/model_mixins/on_schedule_model_mixin.py +1 -3
- edc_visit_schedule/modelform_mixins/off_schedule_modelform_mixin.py +1 -3
- edc_visit_schedule/models/subject_schedule_history.py +3 -8
- edc_visit_schedule/ordered_collection.py +1 -3
- edc_visit_schedule/schedule/schedule.py +6 -17
- edc_visit_schedule/simple_model_validator.py +3 -8
- edc_visit_schedule/site_visit_schedules.py +5 -15
- edc_visit_schedule/subject_schedule.py +4 -16
- edc_visit_schedule/system_checks.py +1 -3
- edc_visit_schedule/utils.py +8 -17
- edc_visit_schedule/view_mixins.py +4 -10
- edc_visit_schedule/visit/crf.py +1 -2
- edc_visit_schedule/visit/requisition.py +1 -3
- edc_visit_schedule/visit/visit.py +6 -16
- edc_visit_schedule/visit/window_period.py +3 -3
- edc_visit_schedule/visit_schedule/visit_schedule.py +2 -5
- edc_visit_tracking/crf_date_validator.py +1 -2
- edc_visit_tracking/form_validators/visit_form_validator.py +2 -8
- edc_visit_tracking/form_validators/visit_missed_form_validator.py +3 -9
- edc_visit_tracking/migrations/0003_auto_20220913_2139.py +2 -6
- edc_visit_tracking/migrations/0004_subjectvisit_subjectvisitmissedreasons_extra_value_and_more.py +8 -16
- edc_visit_tracking/model_mixins/base/visit_methods_model_mixin.py +2 -6
- edc_visit_tracking/model_mixins/crfs/visit_tracking_crf_model_mixin.py +1 -3
- edc_visit_tracking/model_mixins/requisitions/visit_tracking_requisition_model_mixin.py +1 -3
- edc_visit_tracking/model_mixins/subject_visit_missed_model_mixin.py +1 -3
- edc_visit_tracking/model_mixins/visit_model_mixin/visit_model_fields_mixin.py +1 -2
- edc_visit_tracking/modeladmin_mixins/crf_model_admin_mixin.py +4 -8
- edc_visit_tracking/modeladmin_mixins/visit_model_admin_mixin.py +4 -6
- edc_visit_tracking/modelform_mixins/crf/visit_tracking_crf_modelform_mixin.py +2 -6
- edc_visit_tracking/modelform_mixins/utils.py +1 -3
- edc_visit_tracking/modelform_mixins/visit_tracking_modelform_mixin.py +1 -2
- edc_visit_tracking/models/signals.py +1 -3
- edc_visit_tracking/stubs.py +1 -3
- edc_visit_tracking/utils.py +1 -2
- edc_visit_tracking/view_utils/related_visit_button.py +1 -3
- edc_visit_tracking/visit_sequence.py +1 -3
- edc_vitals/__init__.py +2 -0
- edc_vitals/apps.py +6 -0
- edc_vitals/calculators/__init__.py +1 -0
- edc_vitals/calculators/bmi.py +70 -0
- edc_vitals/form_validators/__init__.py +5 -0
- edc_vitals/form_validators/blood_pressure_form_validator_mixin.py +40 -0
- edc_vitals/form_validators/bmi_form_validator_mixin.py +19 -0
- edc_vitals/form_validators/weight_height_with_bmi_form_validator_mixin.py +13 -0
- edc_vitals/migrations/__init__.py +0 -0
- edc_vitals/model_mixins/__init__.py +5 -0
- edc_vitals/model_mixins/blood_pressure_model_mixin.py +80 -0
- edc_vitals/model_mixins/weight_height_bmi_model_mixin.py +42 -0
- edc_vitals/models/__init__.py +10 -0
- edc_vitals/models/fields/__init__.py +7 -0
- edc_vitals/models/fields/blood_pressure.py +36 -0
- edc_vitals/models/fields/heart_rate.py +22 -0
- edc_vitals/models/fields/height.py +26 -0
- edc_vitals/models/fields/respiratory_rate.py +22 -0
- edc_vitals/models/fields/temperature.py +26 -0
- edc_vitals/models/fields/waist_circumference.py +23 -0
- edc_vitals/models/fields/weight.py +26 -0
- edc_vitals/utils.py +51 -0
- edc_vitals/validators.py +5 -0
- edc_lab_results/model_mixin_factory/__init__.py +0 -2
- {clinicedc-2.0.1.dist-info → clinicedc-2.0.2.dist-info}/licenses/LICENSE +0 -0
edc_protocol_incident/urls.py
CHANGED
|
@@ -4,7 +4,5 @@ from django.views.generic import RedirectView
|
|
|
4
4
|
app_name = "edc_protocol_incident"
|
|
5
5
|
|
|
6
6
|
urlpatterns = [
|
|
7
|
-
path(
|
|
8
|
-
"", RedirectView.as_view(url="/edc_protocol_incident/admin/"), name="home_url"
|
|
9
|
-
),
|
|
7
|
+
path("", RedirectView.as_view(url="/edc_protocol_incident/admin/"), name="home_url"),
|
|
10
8
|
]
|
edc_pylabels/actions.py
CHANGED
|
@@ -18,9 +18,7 @@ if TYPE_CHECKING:
|
|
|
18
18
|
|
|
19
19
|
|
|
20
20
|
@admin.action(description="Test print sheet of labels")
|
|
21
|
-
def print_test_label_sheet_action(
|
|
22
|
-
modeladmin, request, queryset: QuerySet[LabelConfiguration]
|
|
23
|
-
):
|
|
21
|
+
def print_test_label_sheet_action(modeladmin, request, queryset: QuerySet[LabelConfiguration]):
|
|
24
22
|
|
|
25
23
|
if queryset.count() > 1 or queryset.count() == 0:
|
|
26
24
|
messages.add_message(
|
|
@@ -50,9 +48,7 @@ def print_test_label_sheet_action(
|
|
|
50
48
|
]
|
|
51
49
|
)
|
|
52
50
|
buffer = sheet.save_to_buffer()
|
|
53
|
-
return FileResponse(
|
|
54
|
-
buffer, as_attachment=True, filename=f"test_print_{obj.name}.pdf"
|
|
55
|
-
)
|
|
51
|
+
return FileResponse(buffer, as_attachment=True, filename=f"test_print_{obj.name}.pdf")
|
|
56
52
|
return None
|
|
57
53
|
|
|
58
54
|
|
|
@@ -32,13 +32,13 @@ class LabelConfigurationAdmin(
|
|
|
32
32
|
actions = [print_test_label_sheet_action]
|
|
33
33
|
form = LabelConfigurationForm
|
|
34
34
|
|
|
35
|
-
instructions =
|
|
35
|
+
instructions = (
|
|
36
|
+
"This model links the label specification with a registered label configuration."
|
|
37
|
+
)
|
|
36
38
|
|
|
37
39
|
date_hierarchy = "created"
|
|
38
40
|
|
|
39
|
-
fieldsets = (
|
|
40
|
-
(None, {"fields": ("name", "label_specification", "requires_allocation")}),
|
|
41
|
-
)
|
|
41
|
+
fieldsets = ((None, {"fields": ("name", "label_specification", "requires_allocation")}),)
|
|
42
42
|
|
|
43
43
|
list_display = ("name", "label_specification")
|
|
44
44
|
|
|
@@ -42,9 +42,7 @@ def draw_callable_example(
|
|
|
42
42
|
br.x = width - 140
|
|
43
43
|
br.y = 25
|
|
44
44
|
label.add(br)
|
|
45
|
-
label.add(
|
|
46
|
-
String(15, height - 20, f"TEST!! Study - {obj.site.name.title()}", fontSize=10)
|
|
47
|
-
)
|
|
45
|
+
label.add(String(15, height - 20, f"TEST!! Study - {obj.site.name.title()}", fontSize=10))
|
|
48
46
|
label.add(
|
|
49
47
|
String(
|
|
50
48
|
width - 110,
|
|
@@ -37,9 +37,7 @@ class Migration(migrations.Migration):
|
|
|
37
37
|
),
|
|
38
38
|
(
|
|
39
39
|
"plural_name",
|
|
40
|
-
models.CharField(
|
|
41
|
-
max_length=250, null=True, verbose_name="Plural name"
|
|
42
|
-
),
|
|
40
|
+
models.CharField(max_length=250, null=True, verbose_name="Plural name"),
|
|
43
41
|
),
|
|
44
42
|
(
|
|
45
43
|
"display_name",
|
|
@@ -43,16 +43,12 @@ class Migration(migrations.Migration):
|
|
|
43
43
|
migrations.AddField(
|
|
44
44
|
model_name="label",
|
|
45
45
|
name="device_created",
|
|
46
|
-
field=models.CharField(
|
|
47
|
-
blank=True, max_length=10, verbose_name="Device created"
|
|
48
|
-
),
|
|
46
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
|
49
47
|
),
|
|
50
48
|
migrations.AddField(
|
|
51
49
|
model_name="label",
|
|
52
50
|
name="device_modified",
|
|
53
|
-
field=models.CharField(
|
|
54
|
-
blank=True, max_length=10, verbose_name="Device modified"
|
|
55
|
-
),
|
|
51
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
|
|
56
52
|
),
|
|
57
53
|
migrations.AddField(
|
|
58
54
|
model_name="label",
|
|
@@ -85,9 +85,7 @@ class Migration(migrations.Migration):
|
|
|
85
85
|
),
|
|
86
86
|
(
|
|
87
87
|
"device_created",
|
|
88
|
-
models.CharField(
|
|
89
|
-
blank=True, max_length=10, verbose_name="Device created"
|
|
90
|
-
),
|
|
88
|
+
models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
|
91
89
|
),
|
|
92
90
|
(
|
|
93
91
|
"device_modified",
|
|
@@ -18,9 +18,7 @@ class LabelConfiguration(BaseUuidModel):
|
|
|
18
18
|
help_text="Name of configuration registered with site_label_config.",
|
|
19
19
|
)
|
|
20
20
|
|
|
21
|
-
label_specification = models.ForeignKey(
|
|
22
|
-
LabelSpecification, on_delete=models.PROTECT
|
|
23
|
-
)
|
|
21
|
+
label_specification = models.ForeignKey(LabelSpecification, on_delete=models.PROTECT)
|
|
24
22
|
|
|
25
23
|
requires_allocation = models.BooleanField(
|
|
26
24
|
verbose_name="Configuration is for a subject label", default=False
|
|
@@ -1,7 +1,6 @@
|
|
|
1
1
|
# Generated by Django 4.2.11 on 2024-06-17 21:40
|
|
2
2
|
|
|
3
3
|
import _socket
|
|
4
|
-
from django.db import migrations, models
|
|
5
4
|
import django.db.models.deletion
|
|
6
5
|
import django.db.models.manager
|
|
7
6
|
import django_audit_fields.fields.hostname_modification_field
|
|
@@ -9,6 +8,8 @@ import django_audit_fields.fields.userfield
|
|
|
9
8
|
import django_audit_fields.fields.uuid_auto_field
|
|
10
9
|
import django_audit_fields.models.audit_model_mixin
|
|
11
10
|
import django_revision.revision_field
|
|
11
|
+
from django.db import migrations, models
|
|
12
|
+
|
|
12
13
|
import edc_sites.managers
|
|
13
14
|
import edc_utils.date
|
|
14
15
|
|
|
@@ -89,9 +90,7 @@ class Migration(migrations.Migration):
|
|
|
89
90
|
),
|
|
90
91
|
(
|
|
91
92
|
"device_created",
|
|
92
|
-
models.CharField(
|
|
93
|
-
blank=True, max_length=10, verbose_name="Device created"
|
|
94
|
-
),
|
|
93
|
+
models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
|
95
94
|
),
|
|
96
95
|
(
|
|
97
96
|
"device_modified",
|
|
@@ -1,12 +1,12 @@
|
|
|
1
1
|
# Generated by Django 4.2.11 on 2024-06-18 02:36
|
|
2
2
|
|
|
3
3
|
import _socket
|
|
4
|
-
from django.db import migrations, models
|
|
5
4
|
import django_audit_fields.fields.hostname_modification_field
|
|
6
5
|
import django_audit_fields.fields.userfield
|
|
7
6
|
import django_audit_fields.fields.uuid_auto_field
|
|
8
7
|
import django_audit_fields.models.audit_model_mixin
|
|
9
8
|
import django_revision.revision_field
|
|
9
|
+
from django.db import migrations, models
|
|
10
10
|
|
|
11
11
|
|
|
12
12
|
class Migration(migrations.Migration):
|
|
@@ -83,9 +83,7 @@ class Migration(migrations.Migration):
|
|
|
83
83
|
),
|
|
84
84
|
(
|
|
85
85
|
"device_created",
|
|
86
|
-
models.CharField(
|
|
87
|
-
blank=True, max_length=10, verbose_name="Device created"
|
|
88
|
-
),
|
|
86
|
+
models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
|
89
87
|
),
|
|
90
88
|
(
|
|
91
89
|
"device_modified",
|
|
@@ -12,8 +12,6 @@ class Migration(migrations.Migration):
|
|
|
12
12
|
operations = [
|
|
13
13
|
migrations.AddIndex(
|
|
14
14
|
model_name="qareportlog",
|
|
15
|
-
index=models.Index(
|
|
16
|
-
fields=["accessed"], name="edc_qarepor_accesse_738ffe_idx"
|
|
17
|
-
),
|
|
15
|
+
index=models.Index(fields=["accessed"], name="edc_qarepor_accesse_738ffe_idx"),
|
|
18
16
|
),
|
|
19
17
|
]
|
|
@@ -21,9 +21,7 @@ class NoteModelMixin(SiteModelMixin, BaseUuidModel):
|
|
|
21
21
|
|
|
22
22
|
note = models.TextField(null=True, blank=True)
|
|
23
23
|
|
|
24
|
-
status = models.CharField(
|
|
25
|
-
max_length=25, choices=NOTE_STATUSES, null=True, blank=False
|
|
26
|
-
)
|
|
24
|
+
status = models.CharField(max_length=25, choices=NOTE_STATUSES, null=True, blank=False)
|
|
27
25
|
|
|
28
26
|
@property
|
|
29
27
|
def report_model_cls(self):
|
|
@@ -44,21 +44,17 @@ class NoteStatusListFilter(SimpleListFilter):
|
|
|
44
44
|
if self.value() and self.value() != "none":
|
|
45
45
|
if report_model := self.report_model(queryset):
|
|
46
46
|
if self.value() == NEW:
|
|
47
|
-
qs = self.note_model_cls.objects.values(
|
|
48
|
-
|
|
49
|
-
)
|
|
47
|
+
qs = self.note_model_cls.objects.values("subject_identifier").filter(
|
|
48
|
+
report_model=report_model
|
|
49
|
+
)
|
|
50
50
|
queryset = queryset.exclude(
|
|
51
|
-
subject_identifier__in=[
|
|
52
|
-
obj.get("subject_identifier") for obj in qs
|
|
53
|
-
]
|
|
51
|
+
subject_identifier__in=[obj.get("subject_identifier") for obj in qs]
|
|
54
52
|
)
|
|
55
53
|
elif self.value() in [tpl[0] for tpl in self.note_model_status_choices]:
|
|
56
|
-
qs = self.note_model_cls.objects.values(
|
|
57
|
-
|
|
58
|
-
)
|
|
54
|
+
qs = self.note_model_cls.objects.values("subject_identifier").filter(
|
|
55
|
+
report_model=report_model, status=self.value()
|
|
56
|
+
)
|
|
59
57
|
queryset = queryset.filter(
|
|
60
|
-
subject_identifier__in=[
|
|
61
|
-
obj.get("subject_identifier") for obj in qs
|
|
62
|
-
]
|
|
58
|
+
subject_identifier__in=[obj.get("subject_identifier") for obj in qs]
|
|
63
59
|
)
|
|
64
60
|
return queryset
|
|
@@ -94,7 +94,5 @@ class NoteModelAdminMixin(
|
|
|
94
94
|
return render_to_string(self.note_template_name, context)
|
|
95
95
|
|
|
96
96
|
def redirect_url(self, request, obj, post_url_continue=None) -> str | None:
|
|
97
|
-
redirect_url = super().redirect_url(
|
|
98
|
-
request, obj, post_url_continue=post_url_continue
|
|
99
|
-
)
|
|
97
|
+
redirect_url = super().redirect_url(request, obj, post_url_continue=post_url_continue)
|
|
100
98
|
return f"{redirect_url}?q={obj.subject_identifier}"
|
|
@@ -96,12 +96,8 @@ class OnStudyMissingValuesModelAdminMixin(
|
|
|
96
96
|
appointment=self.related_visit(obj).appointment.id,
|
|
97
97
|
),
|
|
98
98
|
)
|
|
99
|
-
context = dict(
|
|
100
|
-
|
|
101
|
-
)
|
|
102
|
-
return render_to_string(
|
|
103
|
-
"edc_subject_dashboard/dashboard_button.html", context=context
|
|
104
|
-
)
|
|
99
|
+
context = dict(title=_("Go to subject's dashboard"), url=dashboard_url, label=label)
|
|
100
|
+
return render_to_string("edc_subject_dashboard/dashboard_button.html", context=context)
|
|
105
101
|
|
|
106
102
|
@staticmethod
|
|
107
103
|
def crf_admin_site_name(crf_model_cls) -> str:
|
|
@@ -83,9 +83,7 @@ class QaReportModelAdminMixin:
|
|
|
83
83
|
@admin.display(description="Notes")
|
|
84
84
|
def notes(self, obj=None) -> str:
|
|
85
85
|
"""Returns url to add or edit qa_report note model."""
|
|
86
|
-
note_app_label, note_model_name = self.note_model_cls._meta.label_lower.split(
|
|
87
|
-
"."
|
|
88
|
-
)
|
|
86
|
+
note_app_label, note_model_name = self.note_model_cls._meta.label_lower.split(".")
|
|
89
87
|
note_url_name = f"{note_app_label}_{note_model_name}"
|
|
90
88
|
|
|
91
89
|
report_app_label, report_model_name = self.model._meta.label_lower.split(".")
|
|
@@ -24,11 +24,7 @@ class CrfCase:
|
|
|
24
24
|
@property
|
|
25
25
|
def sql(self):
|
|
26
26
|
sql = CrfSubquery(**self.__dict__).sql
|
|
27
|
-
vendor = (
|
|
28
|
-
"postgres"
|
|
29
|
-
if connection.vendor.startswith("postgres")
|
|
30
|
-
else connection.vendor
|
|
31
|
-
)
|
|
27
|
+
vendor = "postgres" if connection.vendor.startswith("postgres") else connection.vendor
|
|
32
28
|
return sqlglot.transpile(sql, read="mysql", write=vendor)[0]
|
|
33
29
|
|
|
34
30
|
@property
|
|
@@ -25,9 +25,7 @@ class SqlViewGenerator:
|
|
|
25
25
|
)
|
|
26
26
|
|
|
27
27
|
def __post_init__(self):
|
|
28
|
-
ordering = [
|
|
29
|
-
f"{fld[1:]} desc" if fld.startswith("~") else fld for fld in self.ordering
|
|
30
|
-
]
|
|
28
|
+
ordering = [f"{fld[1:]} desc" if fld.startswith("~") else fld for fld in self.ordering]
|
|
31
29
|
self.order_by = ", ".join(ordering) or "subject_identifier"
|
|
32
30
|
self.footer = f") as A ORDER BY {self.order_by}"
|
|
33
31
|
|
edc_qareports/utils.py
CHANGED
|
@@ -20,9 +20,7 @@ def read_unmanaged_model_sql(
|
|
|
20
20
|
uuid_func = "gen_random_uuid()"
|
|
21
21
|
|
|
22
22
|
if not fullpath:
|
|
23
|
-
fullpath = (
|
|
24
|
-
Path(settings.BASE_DIR) / app_name / "models" / "unmanaged" / filename
|
|
25
|
-
)
|
|
23
|
+
fullpath = Path(settings.BASE_DIR) / app_name / "models" / "unmanaged" / filename
|
|
26
24
|
else:
|
|
27
25
|
fullpath = Path(fullpath)
|
|
28
26
|
|
|
@@ -86,9 +84,7 @@ def recreate_db_view(model_cls, drop: bool | None = None, verbose: bool | None =
|
|
|
86
84
|
"""
|
|
87
85
|
drop = True if drop is None else drop
|
|
88
86
|
try:
|
|
89
|
-
sql = model_cls.view_definition.get(
|
|
90
|
-
settings.DATABASES["default"]["ENGINE"]
|
|
91
|
-
) # noqa
|
|
87
|
+
sql = model_cls.view_definition.get(settings.DATABASES["default"]["ENGINE"]) # noqa
|
|
92
88
|
except AttributeError as e:
|
|
93
89
|
raise AttributeError(
|
|
94
90
|
f"Is this model linked to a view? Declare model with `DBView`. Got {e}"
|
edc_randomization/admin.py
CHANGED
|
@@ -157,9 +157,7 @@ def register_admin():
|
|
|
157
157
|
site_randomizers.autodiscover()
|
|
158
158
|
for randomizer_cls in site_randomizers._registry.values():
|
|
159
159
|
model = randomizer_cls.model_cls()
|
|
160
|
-
admin_cls = type(
|
|
161
|
-
f"{model.__name__}ModelAdmin", (RandomizationListModelAdmin,), {}
|
|
162
|
-
)
|
|
160
|
+
admin_cls = type(f"{model.__name__}ModelAdmin", (RandomizationListModelAdmin,), {})
|
|
163
161
|
try:
|
|
164
162
|
edc_randomization_admin.register(model, admin_cls)
|
|
165
163
|
except AlreadyRegistered:
|
edc_randomization/auths.py
CHANGED
|
@@ -13,11 +13,7 @@ site_auths.add_post_update_func(
|
|
|
13
13
|
"edc_randomization", remove_default_model_permissions_from_edc_permissions
|
|
14
14
|
)
|
|
15
15
|
|
|
16
|
-
site_auths.add_group(
|
|
17
|
-
|
|
18
|
-
)
|
|
19
|
-
site_auths.add_group(
|
|
20
|
-
get_rando_permissions_codenames, name=RANDO_UNBLINDED, view_only=True
|
|
21
|
-
)
|
|
16
|
+
site_auths.add_group(get_rando_permissions_codenames, name=RANDO_BLINDED, view_only=True)
|
|
17
|
+
site_auths.add_group(get_rando_permissions_codenames, name=RANDO_UNBLINDED, view_only=True)
|
|
22
18
|
site_auths.add_post_update_func("edc_randomization", update_rando_group_permissions)
|
|
23
19
|
site_auths.add_post_update_func("edc_randomization", make_randomizationlist_view_only)
|
edc_randomization/blinding.py
CHANGED
|
@@ -52,9 +52,7 @@ def user_is_blinded_from_request(request):
|
|
|
52
52
|
return False
|
|
53
53
|
|
|
54
54
|
|
|
55
|
-
def raise_if_prohibited_from_unblinded_rando_group(
|
|
56
|
-
username: str, groups: Iterable
|
|
57
|
-
) -> None:
|
|
55
|
+
def raise_if_prohibited_from_unblinded_rando_group(username: str, groups: Iterable) -> None:
|
|
58
56
|
"""A user form validation to prevent adding an unlisted
|
|
59
57
|
user to the RANDO_UNBLINDED group.
|
|
60
58
|
|
|
@@ -9,9 +9,10 @@ import django_audit_fields.fields.uuid_auto_field
|
|
|
9
9
|
import django_audit_fields.models.audit_model_mixin
|
|
10
10
|
import django_crypto_fields.fields.encrypted_char_field
|
|
11
11
|
import django_revision.revision_field
|
|
12
|
-
import edc_sites.models
|
|
13
12
|
from django.db import migrations, models
|
|
14
13
|
|
|
14
|
+
import edc_sites.models
|
|
15
|
+
|
|
15
16
|
|
|
16
17
|
class Migration(migrations.Migration):
|
|
17
18
|
initial = True
|
|
@@ -141,9 +142,7 @@ class Migration(migrations.Migration):
|
|
|
141
142
|
],
|
|
142
143
|
options={
|
|
143
144
|
"ordering": ("site_name", "sid"),
|
|
144
|
-
"permissions": (
|
|
145
|
-
("display_randomization", "Can display randomization"),
|
|
146
|
-
),
|
|
145
|
+
"permissions": (("display_randomization", "Can display randomization"),),
|
|
147
146
|
"abstract": False,
|
|
148
147
|
"unique_together": {("site_name", "sid")},
|
|
149
148
|
},
|
|
@@ -1,12 +1,12 @@
|
|
|
1
1
|
# Generated by Django 3.2.13 on 2022-08-25 01:51
|
|
2
2
|
|
|
3
3
|
import _socket
|
|
4
|
-
from django.db import migrations, models
|
|
5
4
|
import django_audit_fields.fields.hostname_modification_field
|
|
6
5
|
import django_audit_fields.fields.userfield
|
|
7
6
|
import django_audit_fields.fields.uuid_auto_field
|
|
8
7
|
import django_audit_fields.models.audit_model_mixin
|
|
9
8
|
import django_revision.revision_field
|
|
9
|
+
from django.db import migrations, models
|
|
10
10
|
|
|
11
11
|
|
|
12
12
|
class Migration(migrations.Migration):
|
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
# Generated by Django 4.2.4 on 2023-08-23 01:13
|
|
2
2
|
|
|
3
3
|
import _socket
|
|
4
|
-
from django.db import migrations, models
|
|
5
4
|
import django_audit_fields.fields.hostname_modification_field
|
|
5
|
+
from django.db import migrations, models
|
|
6
6
|
|
|
7
7
|
|
|
8
8
|
class Migration(migrations.Migration):
|
|
@@ -14,16 +14,12 @@ class Migration(migrations.Migration):
|
|
|
14
14
|
migrations.AlterField(
|
|
15
15
|
model_name="edcpermissions",
|
|
16
16
|
name="device_created",
|
|
17
|
-
field=models.CharField(
|
|
18
|
-
blank=True, max_length=10, verbose_name="Device created"
|
|
19
|
-
),
|
|
17
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
|
20
18
|
),
|
|
21
19
|
migrations.AlterField(
|
|
22
20
|
model_name="edcpermissions",
|
|
23
21
|
name="device_modified",
|
|
24
|
-
field=models.CharField(
|
|
25
|
-
blank=True, max_length=10, verbose_name="Device modified"
|
|
26
|
-
),
|
|
22
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
|
|
27
23
|
),
|
|
28
24
|
migrations.AlterField(
|
|
29
25
|
model_name="edcpermissions",
|
|
@@ -49,16 +45,12 @@ class Migration(migrations.Migration):
|
|
|
49
45
|
migrations.AlterField(
|
|
50
46
|
model_name="historicalrandomizationlist",
|
|
51
47
|
name="device_created",
|
|
52
|
-
field=models.CharField(
|
|
53
|
-
blank=True, max_length=10, verbose_name="Device created"
|
|
54
|
-
),
|
|
48
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
|
55
49
|
),
|
|
56
50
|
migrations.AlterField(
|
|
57
51
|
model_name="historicalrandomizationlist",
|
|
58
52
|
name="device_modified",
|
|
59
|
-
field=models.CharField(
|
|
60
|
-
blank=True, max_length=10, verbose_name="Device modified"
|
|
61
|
-
),
|
|
53
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
|
|
62
54
|
),
|
|
63
55
|
migrations.AlterField(
|
|
64
56
|
model_name="historicalrandomizationlist",
|
|
@@ -84,16 +76,12 @@ class Migration(migrations.Migration):
|
|
|
84
76
|
migrations.AlterField(
|
|
85
77
|
model_name="randomizationlist",
|
|
86
78
|
name="device_created",
|
|
87
|
-
field=models.CharField(
|
|
88
|
-
blank=True, max_length=10, verbose_name="Device created"
|
|
89
|
-
),
|
|
79
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
|
90
80
|
),
|
|
91
81
|
migrations.AlterField(
|
|
92
82
|
model_name="randomizationlist",
|
|
93
83
|
name="device_modified",
|
|
94
|
-
field=models.CharField(
|
|
95
|
-
blank=True, max_length=10, verbose_name="Device modified"
|
|
96
|
-
),
|
|
84
|
+
field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
|
|
97
85
|
),
|
|
98
86
|
migrations.AlterField(
|
|
99
87
|
model_name="randomizationlist",
|
|
@@ -42,9 +42,7 @@ class RandomizationListModelMixin(models.Model):
|
|
|
42
42
|
|
|
43
43
|
site_name = models.CharField(max_length=100)
|
|
44
44
|
|
|
45
|
-
allocation = EncryptedCharField(
|
|
46
|
-
verbose_name="Original integer allocation", null=True
|
|
47
|
-
)
|
|
45
|
+
allocation = EncryptedCharField(verbose_name="Original integer allocation", null=True)
|
|
48
46
|
|
|
49
47
|
allocated = models.BooleanField(default=False)
|
|
50
48
|
|
|
@@ -82,8 +80,7 @@ class RandomizationListModelMixin(models.Model):
|
|
|
82
80
|
except ObjectDoesNotExist:
|
|
83
81
|
site_names = [obj.name for obj in Site.objects.all()]
|
|
84
82
|
raise RandomizationListModelError(
|
|
85
|
-
f"Invalid site name. Got {self.site_name}. "
|
|
86
|
-
f"Expected one of {site_names}."
|
|
83
|
+
f"Invalid site name. Got {self.site_name}. " f"Expected one of {site_names}."
|
|
87
84
|
)
|
|
88
85
|
super().save(*args, **kwargs)
|
|
89
86
|
|
|
@@ -128,9 +128,7 @@ class RandomizationListImporter:
|
|
|
128
128
|
self._summarize_results()
|
|
129
129
|
if self.verbose:
|
|
130
130
|
sys.stdout.write(
|
|
131
|
-
style.SUCCESS(
|
|
132
|
-
"\nDone.------------------------------------------------\n"
|
|
133
|
-
)
|
|
131
|
+
style.SUCCESS("\nDone.------------------------------------------------\n")
|
|
134
132
|
)
|
|
135
133
|
return rec_count, self.randomizationlist_path
|
|
136
134
|
|
|
@@ -176,8 +174,7 @@ class RandomizationListImporter:
|
|
|
176
174
|
for fieldname in self.required_csv_fieldnames:
|
|
177
175
|
if fieldname not in row:
|
|
178
176
|
raise RandomizationListImportError(
|
|
179
|
-
"Invalid header. Missing column "
|
|
180
|
-
f"`{fieldname}`. Got {row}"
|
|
177
|
+
"Invalid header. Missing column " f"`{fieldname}`. Got {row}"
|
|
181
178
|
)
|
|
182
179
|
elif index == 1:
|
|
183
180
|
if self.dryrun:
|
|
@@ -311,8 +308,7 @@ class RandomizationListImporter:
|
|
|
311
308
|
def get_site_names() -> dict[str, str]:
|
|
312
309
|
"""A dict of site names for the target randomizer."""
|
|
313
310
|
return {
|
|
314
|
-
single_site.name: single_site.name
|
|
315
|
-
for single_site in site_sites.all().values()
|
|
311
|
+
single_site.name: single_site.name for single_site in site_sites.all().values()
|
|
316
312
|
}
|
|
317
313
|
|
|
318
314
|
def validate_site_name(self, row) -> str:
|
|
@@ -44,9 +44,7 @@ class RandomizationListVerifier:
|
|
|
44
44
|
|
|
45
45
|
randomizer_cls = site_randomizers.get(randomizer_name)
|
|
46
46
|
if not randomizer_cls:
|
|
47
|
-
raise RandomizationListError(
|
|
48
|
-
f"Randomizer not registered. Got `{randomizer_name}`"
|
|
49
|
-
)
|
|
47
|
+
raise RandomizationListError(f"Randomizer not registered. Got `{randomizer_name}`")
|
|
50
48
|
self.fieldnames = fieldnames or self.required_csv_fieldnames
|
|
51
49
|
try:
|
|
52
50
|
self.count = self.randomizer_model_cls.objects.all().count()
|
|
@@ -62,10 +60,7 @@ class RandomizationListVerifier:
|
|
|
62
60
|
)
|
|
63
61
|
|
|
64
62
|
else:
|
|
65
|
-
if (
|
|
66
|
-
not self.randomizationlist_path
|
|
67
|
-
or not self.randomizationlist_path.exists()
|
|
68
|
-
):
|
|
63
|
+
if not self.randomizationlist_path or not self.randomizationlist_path.exists():
|
|
69
64
|
self.messages.append(
|
|
70
65
|
f"Randomization list file does not exist but SIDs "
|
|
71
66
|
f"have been loaded. Expected file "
|
edc_randomization/randomizer.py
CHANGED
|
@@ -183,9 +183,7 @@ class Randomizer:
|
|
|
183
183
|
self.registration_obj.sid = self.sid
|
|
184
184
|
self.registration_obj.randomization_datetime = self.model_obj.allocated_datetime
|
|
185
185
|
self.registration_obj.registration_status = RANDOMIZED
|
|
186
|
-
self.registration_obj.randomization_list_model =
|
|
187
|
-
self.model_obj._meta.label_lower
|
|
188
|
-
)
|
|
186
|
+
self.registration_obj.randomization_list_model = self.model_obj._meta.label_lower
|
|
189
187
|
self.registration_obj.save()
|
|
190
188
|
# requery
|
|
191
189
|
self._registration_obj = self.get_registration_model_cls().objects.get(
|
|
@@ -302,9 +300,7 @@ class Randomizer:
|
|
|
302
300
|
self._registration_obj = self.get_unallocated_registration_obj()
|
|
303
301
|
except ObjectDoesNotExist:
|
|
304
302
|
try:
|
|
305
|
-
obj = self.get_registration_model_cls().objects.get(
|
|
306
|
-
**self.identifier_opts
|
|
307
|
-
)
|
|
303
|
+
obj = self.get_registration_model_cls().objects.get(**self.identifier_opts)
|
|
308
304
|
except ObjectDoesNotExist:
|
|
309
305
|
raise RandomizationError(
|
|
310
306
|
f"{self.identifier_object_name.title()} does not exist. "
|
|
@@ -115,9 +115,7 @@ class SiteRandomizers:
|
|
|
115
115
|
before_import_registry = copy.copy(site_randomizers._registry)
|
|
116
116
|
import_module(f"{app}.{module_name}")
|
|
117
117
|
if verbose:
|
|
118
|
-
sys.stdout.write(
|
|
119
|
-
" * registered randomizer from " f"'{app}'\n"
|
|
120
|
-
)
|
|
118
|
+
sys.stdout.write(" * registered randomizer from " f"'{app}'\n")
|
|
121
119
|
except Exception as e:
|
|
122
120
|
if f"No module named '{app}.{module_name}'" not in str(e):
|
|
123
121
|
raise
|
|
@@ -60,9 +60,7 @@ def randomizationlist_check(app_configs, **kwargs) -> list:
|
|
|
60
60
|
for error_msg in error_msgs:
|
|
61
61
|
errors.append(error.cls(error_msg, hint=None, obj=None, id=error.id))
|
|
62
62
|
if not settings.DEBUG:
|
|
63
|
-
if not randomizer.get_randomizationlist_path().is_relative_to(
|
|
64
|
-
settings.ETC_DIR
|
|
65
|
-
):
|
|
63
|
+
if not randomizer.get_randomizationlist_path().is_relative_to(settings.ETC_DIR):
|
|
66
64
|
errors.append(
|
|
67
65
|
Warning(
|
|
68
66
|
"Insecure configuration. Randomization list file must be "
|
edc_randomization/utils.py
CHANGED
|
@@ -119,9 +119,7 @@ def generate_fake_randomization_list(
|
|
|
119
119
|
# get site ID and write the file
|
|
120
120
|
site_id = sites.get_by_attr("name", site_name)
|
|
121
121
|
with open(filename, "a+", newline="") as f:
|
|
122
|
-
writer = csv.DictWriter(
|
|
123
|
-
f, fieldnames=["sid", "assignment", "site_name", "country"]
|
|
124
|
-
)
|
|
122
|
+
writer = csv.DictWriter(f, fieldnames=["sid", "assignment", "site_name", "country"])
|
|
125
123
|
if write_header:
|
|
126
124
|
writer.writeheader()
|
|
127
125
|
for j in range(1, int(slots)):
|
|
@@ -147,9 +145,7 @@ def export_randomization_list(
|
|
|
147
145
|
user = get_user_model().objects.get(username=username)
|
|
148
146
|
except ObjectDoesNotExist:
|
|
149
147
|
raise RandomizationListExporterError(f"User `{username}` does not exist")
|
|
150
|
-
if not user.has_perm(
|
|
151
|
-
randomizer_cls.model_cls()._meta.label_lower.replace(".", ".view_")
|
|
152
|
-
):
|
|
148
|
+
if not user.has_perm(randomizer_cls.model_cls()._meta.label_lower.replace(".", ".view_")):
|
|
153
149
|
raise RandomizationListExporterError(
|
|
154
150
|
f"User `{username}` does not have "
|
|
155
151
|
f"permission to view '{randomizer_cls.model_cls()._meta.label_lower}'"
|
edc_refusal/admin.py
CHANGED
|
@@ -70,7 +70,5 @@ class SubjectRefusalAdmin(
|
|
|
70
70
|
if callable(super().view_on_site):
|
|
71
71
|
url = super().view_on_site(obj)
|
|
72
72
|
else:
|
|
73
|
-
raise NoReverseMatch(
|
|
74
|
-
f"{e}. See subject_dashboard_url_name for {repr(self)}."
|
|
75
|
-
)
|
|
73
|
+
raise NoReverseMatch(f"{e}. See subject_dashboard_url_name for {repr(self)}.")
|
|
76
74
|
return url
|
edc_refusal/forms.py
CHANGED
|
@@ -21,8 +21,7 @@ class ScreeningFormMixin:
|
|
|
21
21
|
def clean(self):
|
|
22
22
|
cleaned_data = super().clean()
|
|
23
23
|
screening_identifier = (
|
|
24
|
-
cleaned_data.get("screening_identifier")
|
|
25
|
-
or self.instance.screening_identifier
|
|
24
|
+
cleaned_data.get("screening_identifier") or self.instance.screening_identifier
|
|
26
25
|
)
|
|
27
26
|
if screening_identifier:
|
|
28
27
|
subject_screening = get_subject_screening_model_cls().objects.get(
|