brainstate 0.0.1__py2.py3-none-any.whl

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Files changed (79) hide show
  1. brainstate/__init__.py +45 -0
  2. brainstate/_module.py +1466 -0
  3. brainstate/_module_test.py +133 -0
  4. brainstate/_state.py +378 -0
  5. brainstate/_state_test.py +41 -0
  6. brainstate/_utils.py +21 -0
  7. brainstate/environ.py +375 -0
  8. brainstate/functional/__init__.py +25 -0
  9. brainstate/functional/_activations.py +754 -0
  10. brainstate/functional/_normalization.py +69 -0
  11. brainstate/functional/_spikes.py +90 -0
  12. brainstate/init/__init__.py +26 -0
  13. brainstate/init/_base.py +36 -0
  14. brainstate/init/_generic.py +175 -0
  15. brainstate/init/_random_inits.py +489 -0
  16. brainstate/init/_regular_inits.py +109 -0
  17. brainstate/math/__init__.py +21 -0
  18. brainstate/math/_einops.py +787 -0
  19. brainstate/math/_einops_parsing.py +169 -0
  20. brainstate/math/_einops_parsing_test.py +126 -0
  21. brainstate/math/_einops_test.py +346 -0
  22. brainstate/math/_misc.py +298 -0
  23. brainstate/math/_misc_test.py +58 -0
  24. brainstate/mixin.py +373 -0
  25. brainstate/mixin_test.py +73 -0
  26. brainstate/nn/__init__.py +68 -0
  27. brainstate/nn/_base.py +248 -0
  28. brainstate/nn/_connections.py +686 -0
  29. brainstate/nn/_dynamics.py +406 -0
  30. brainstate/nn/_elementwise.py +1437 -0
  31. brainstate/nn/_misc.py +132 -0
  32. brainstate/nn/_normalizations.py +389 -0
  33. brainstate/nn/_others.py +100 -0
  34. brainstate/nn/_poolings.py +1228 -0
  35. brainstate/nn/_poolings_test.py +231 -0
  36. brainstate/nn/_projection/__init__.py +32 -0
  37. brainstate/nn/_projection/_align_post.py +528 -0
  38. brainstate/nn/_projection/_align_pre.py +599 -0
  39. brainstate/nn/_projection/_delta.py +241 -0
  40. brainstate/nn/_projection/_utils.py +17 -0
  41. brainstate/nn/_projection/_vanilla.py +101 -0
  42. brainstate/nn/_rate_rnns.py +393 -0
  43. brainstate/nn/_readout.py +130 -0
  44. brainstate/nn/_synouts.py +166 -0
  45. brainstate/nn/functional/__init__.py +25 -0
  46. brainstate/nn/functional/_activations.py +754 -0
  47. brainstate/nn/functional/_normalization.py +69 -0
  48. brainstate/nn/functional/_spikes.py +90 -0
  49. brainstate/nn/init/__init__.py +26 -0
  50. brainstate/nn/init/_base.py +36 -0
  51. brainstate/nn/init/_generic.py +175 -0
  52. brainstate/nn/init/_random_inits.py +489 -0
  53. brainstate/nn/init/_regular_inits.py +109 -0
  54. brainstate/nn/surrogate.py +1740 -0
  55. brainstate/optim/__init__.py +23 -0
  56. brainstate/optim/_lr_scheduler.py +486 -0
  57. brainstate/optim/_lr_scheduler_test.py +36 -0
  58. brainstate/optim/_sgd_optimizer.py +1148 -0
  59. brainstate/random.py +5148 -0
  60. brainstate/random_test.py +576 -0
  61. brainstate/surrogate.py +1740 -0
  62. brainstate/transform/__init__.py +36 -0
  63. brainstate/transform/_autograd.py +585 -0
  64. brainstate/transform/_autograd_test.py +1183 -0
  65. brainstate/transform/_control.py +665 -0
  66. brainstate/transform/_controls_test.py +220 -0
  67. brainstate/transform/_jit.py +239 -0
  68. brainstate/transform/_jit_error.py +158 -0
  69. brainstate/transform/_jit_test.py +102 -0
  70. brainstate/transform/_make_jaxpr.py +573 -0
  71. brainstate/transform/_make_jaxpr_test.py +133 -0
  72. brainstate/transform/_progress_bar.py +113 -0
  73. brainstate/typing.py +69 -0
  74. brainstate/util.py +747 -0
  75. brainstate-0.0.1.dist-info/LICENSE +202 -0
  76. brainstate-0.0.1.dist-info/METADATA +101 -0
  77. brainstate-0.0.1.dist-info/RECORD +79 -0
  78. brainstate-0.0.1.dist-info/WHEEL +6 -0
  79. brainstate-0.0.1.dist-info/top_level.txt +1 -0
@@ -0,0 +1,231 @@
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+ # -*- coding: utf-8 -*-
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+
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+
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+ import jax
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+ import numpy as np
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+ from absl.testing import absltest
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+ from absl.testing import parameterized
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+
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+ import brainstate as bst
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+ import brainstate.nn as nn
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+
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+
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+ class TestFlatten(parameterized.TestCase):
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+ def test_flatten1(self):
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+ for size in [
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+ (16, 32, 32, 8),
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+ (32, 8),
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+ (10, 20, 30),
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+ ]:
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+ arr = bst.random.rand(*size)
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+ f = nn.Flatten(start_dim=0)
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+ out = f(arr)
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+ self.assertTrue(out.shape == (np.prod(size),))
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+
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+ def test_flatten2(self):
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+ for size in [
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+ (16, 32, 32, 8),
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+ (32, 8),
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+ (10, 20, 30),
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+ ]:
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+ arr = bst.random.rand(*size)
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+ f = nn.Flatten(start_dim=1)
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+ out = f(arr)
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+ self.assertTrue(out.shape == (size[0], np.prod(size[1:])))
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+
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+ def test_flatten3(self):
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+ size = (16, 32, 32, 8)
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+ arr = bst.random.rand(*size)
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+ f = nn.Flatten(start_dim=0, in_size=(32, 8))
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+ out = f(arr)
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+ self.assertTrue(out.shape == (16, 32, 32 * 8))
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+
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+ def test_flatten4(self):
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+ size = (16, 32, 32, 8)
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+ arr = bst.random.rand(*size)
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+ f = nn.Flatten(start_dim=1, in_size=(32, 32, 8))
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+ out = f(arr)
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+ self.assertTrue(out.shape == (16, 32, 32 * 8))
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+
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+
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+ class TestUnflatten(parameterized.TestCase):
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+ pass
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+
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+
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+ class TestPool(parameterized.TestCase):
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+ def __init__(self, *args, **kwargs):
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+ super().__init__(*args, **kwargs)
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+
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+ def test_MaxPool2d_v1(self):
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+ arr = bst.random.rand(16, 32, 32, 8)
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+
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+ out = nn.MaxPool2d(2, 2, channel_axis=-1)(arr)
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+ self.assertTrue(out.shape == (16, 16, 16, 8))
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+
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+ out = nn.MaxPool2d(2, 2, channel_axis=None)(arr)
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+ self.assertTrue(out.shape == (16, 32, 16, 4))
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+
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+ out = nn.MaxPool2d(2, 2, channel_axis=None, padding=1)(arr)
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+ self.assertTrue(out.shape == (16, 32, 17, 5))
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+
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+ out = nn.MaxPool2d(2, 2, channel_axis=None, padding=(2, 1))(arr)
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+ self.assertTrue(out.shape == (16, 32, 18, 5))
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+
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+ out = nn.MaxPool2d(2, 2, channel_axis=-1, padding=(1, 1))(arr)
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+ self.assertTrue(out.shape == (16, 17, 17, 8))
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+
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+ out = nn.MaxPool2d(2, 2, channel_axis=2, padding=(1, 1))(arr)
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+ self.assertTrue(out.shape == (16, 17, 32, 5))
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+ bst.util.clear_buffer_memory()
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+
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+ def test_AvgPool2d_v1(self):
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+ arr = bst.random.rand(16, 32, 32, 8)
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+
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+ out = nn.AvgPool2d(2, 2, channel_axis=-1)(arr)
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+ self.assertTrue(out.shape == (16, 16, 16, 8))
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+
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+ out = nn.AvgPool2d(2, 2, channel_axis=None)(arr)
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+ self.assertTrue(out.shape == (16, 32, 16, 4))
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+
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+ out = nn.AvgPool2d(2, 2, channel_axis=None, padding=1)(arr)
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+ self.assertTrue(out.shape == (16, 32, 17, 5))
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+
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+ out = nn.AvgPool2d(2, 2, channel_axis=None, padding=(2, 1))(arr)
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+ self.assertTrue(out.shape == (16, 32, 18, 5))
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+
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+ out = nn.AvgPool2d(2, 2, channel_axis=-1, padding=(1, 1))(arr)
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+ self.assertTrue(out.shape == (16, 17, 17, 8))
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+
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+ out = nn.AvgPool2d(2, 2, channel_axis=2, padding=(1, 1))(arr)
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+ self.assertTrue(out.shape == (16, 17, 32, 5))
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+ bst.util.clear_buffer_memory()
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+
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+ @parameterized.named_parameters(
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+ dict(testcase_name=f'target_size={target_size}',
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+ target_size=target_size)
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+ for target_size in [10, 9, 8, 7, 6]
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+ )
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+ def test_adaptive_pool1d(self, target_size):
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+ from brainstate.nn._poolings import _adaptive_pool1d
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+
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+ arr = bst.random.rand(100)
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+ op = jax.numpy.mean
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+
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+ out = _adaptive_pool1d(arr, target_size, op)
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+ print(out.shape)
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+ self.assertTrue(out.shape == (target_size,))
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+
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+ out = _adaptive_pool1d(arr, target_size, op)
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+ print(out.shape)
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+ self.assertTrue(out.shape == (target_size,))
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+ bst.util.clear_buffer_memory()
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+
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+ def test_AdaptiveAvgPool2d_v1(self):
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+ input = bst.random.randn(64, 8, 9)
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+
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+ output = nn.AdaptiveAvgPool2d((5, 7), channel_axis=0)(input)
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+ self.assertTrue(output.shape == (64, 5, 7))
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+
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+ output = nn.AdaptiveAvgPool2d((2, 3), channel_axis=0)(input)
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+ self.assertTrue(output.shape == (64, 2, 3))
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+
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+ output = nn.AdaptiveAvgPool2d((2, 3), channel_axis=-1)(input)
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+ self.assertTrue(output.shape == (2, 3, 9))
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+
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+ output = nn.AdaptiveAvgPool2d((2, 3), channel_axis=1)(input)
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+ self.assertTrue(output.shape == (2, 8, 3))
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+
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+ output = nn.AdaptiveAvgPool2d((2, 3), channel_axis=None)(input)
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+ self.assertTrue(output.shape == (64, 2, 3))
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+ bst.util.clear_buffer_memory()
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+
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+ def test_AdaptiveAvgPool2d_v2(self):
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+ bst.random.seed()
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+ input = bst.random.randn(128, 64, 32, 16)
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+
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+ output = nn.AdaptiveAvgPool2d((5, 7), channel_axis=0)(input)
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+ self.assertTrue(output.shape == (128, 64, 5, 7))
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+
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+ output = nn.AdaptiveAvgPool2d((2, 3), channel_axis=0)(input)
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+ self.assertTrue(output.shape == (128, 64, 2, 3))
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+
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+ output = nn.AdaptiveAvgPool2d((2, 3), channel_axis=-1)(input)
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+ self.assertTrue(output.shape == (128, 2, 3, 16))
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+
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+ output = nn.AdaptiveAvgPool2d((2, 3), channel_axis=1)(input)
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+ self.assertTrue(output.shape == (128, 64, 2, 3))
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+ print()
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+ bst.util.clear_buffer_memory()
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+
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+ def test_AdaptiveAvgPool3d_v1(self):
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+ input = bst.random.randn(10, 128, 64, 32)
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+ net = nn.AdaptiveAvgPool3d(target_size=[6, 5, 3], channel_axis=0)
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+ output = net(input)
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+ self.assertTrue(output.shape == (10, 6, 5, 3))
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+ bst.util.clear_buffer_memory()
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+
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+ def test_AdaptiveAvgPool3d_v2(self):
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+ input = bst.random.randn(10, 20, 128, 64, 32)
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+ net = nn.AdaptiveAvgPool3d(target_size=[6, 5, 3])
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+ output = net(input)
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+ self.assertTrue(output.shape == (10, 6, 5, 3, 32))
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+ bst.util.clear_buffer_memory()
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+
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+ @parameterized.product(
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+ axis=(-1, 0, 1)
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+ )
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+ def test_AdaptiveMaxPool1d_v1(self, axis):
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+ input = bst.random.randn(32, 16)
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+ net = nn.AdaptiveMaxPool1d(target_size=4, channel_axis=axis)
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+ output = net(input)
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+ bst.util.clear_buffer_memory()
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+
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+ @parameterized.product(
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+ axis=(-1, 0, 1, 2)
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+ )
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+ def test_AdaptiveMaxPool1d_v2(self, axis):
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+ input = bst.random.randn(2, 32, 16)
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+ net = nn.AdaptiveMaxPool1d(target_size=4, channel_axis=axis)
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+ output = net(input)
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+ bst.util.clear_buffer_memory()
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+
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+ @parameterized.product(
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+ axis=(-1, 0, 1, 2)
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+ )
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+ def test_AdaptiveMaxPool2d_v1(self, axis):
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+ input = bst.random.randn(32, 16, 12)
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+ net = nn.AdaptiveAvgPool2d(target_size=[5, 4], channel_axis=axis)
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+ output = net(input)
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+ bst.util.clear_buffer_memory()
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+
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+ @parameterized.product(
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+ axis=(-1, 0, 1, 2, 3)
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+ )
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+ def test_AdaptiveMaxPool2d_v2(self, axis):
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+ input = bst.random.randn(2, 32, 16, 12)
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+ net = nn.AdaptiveAvgPool2d(target_size=[5, 4], channel_axis=axis)
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+ output = net(input)
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+ bst.util.clear_buffer_memory()
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+
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+ @parameterized.product(
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+ axis=(-1, 0, 1, 2, 3)
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+ )
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+ def test_AdaptiveMaxPool3d_v1(self, axis):
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+ input = bst.random.randn(2, 128, 64, 32)
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+ net = nn.AdaptiveMaxPool3d(target_size=[6, 5, 4], channel_axis=axis)
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+ output = net(input)
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+ print()
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+ bst.util.clear_buffer_memory()
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+
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+ @parameterized.product(
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+ axis=(-1, 0, 1, 2, 3, 4)
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+ )
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+ def test_AdaptiveMaxPool3d_v1(self, axis):
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+ input = bst.random.randn(2, 128, 64, 32, 16)
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+ net = nn.AdaptiveMaxPool3d(target_size=[6, 5, 4], channel_axis=axis)
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+ output = net(input)
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+ bst.util.clear_buffer_memory()
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+
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+
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+ if __name__ == '__main__':
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+ absltest.main()
@@ -0,0 +1,32 @@
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+ # Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
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+ #
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+ # Licensed under the Apache License, Version 2.0 (the "License");
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+ # you may not use this file except in compliance with the License.
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+ # You may obtain a copy of the License at
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+ #
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+ # http://www.apache.org/licenses/LICENSE-2.0
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+ #
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+ # Unless required by applicable law or agreed to in writing, software
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+ # distributed under the License is distributed on an "AS IS" BASIS,
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+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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+ # See the License for the specific language governing permissions and
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+ # limitations under the License.
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+ # ==============================================================================
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+
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+ """
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+
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+ This module defines the basic classes for synaptic projections.
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+
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+ """
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+
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+ from ._align_post import *
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+ from ._align_post import __all__ as align_post_all
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+ from ._align_pre import *
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+ from ._align_pre import __all__ as align_pre_all
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+ from ._delta import *
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+ from ._delta import __all__ as delta_all
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+ from ._vanilla import *
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+ from ._vanilla import __all__ as vanilla_all
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+
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+ __all__ = align_post_all + align_pre_all + delta_all + vanilla_all
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+ del align_post_all, align_pre_all, delta_all, vanilla_all