brainscore-vision 2.1__py3-none-any.whl

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  1. brainscore_vision/__init__.py +105 -0
  2. brainscore_vision/__main__.py +20 -0
  3. brainscore_vision/benchmark_helpers/__init__.py +67 -0
  4. brainscore_vision/benchmark_helpers/neural_common.py +70 -0
  5. brainscore_vision/benchmark_helpers/properties_common.py +424 -0
  6. brainscore_vision/benchmark_helpers/screen.py +126 -0
  7. brainscore_vision/benchmark_helpers/test_helper.py +160 -0
  8. brainscore_vision/benchmarks/README.md +7 -0
  9. brainscore_vision/benchmarks/__init__.py +122 -0
  10. brainscore_vision/benchmarks/baker2022/__init__.py +9 -0
  11. brainscore_vision/benchmarks/baker2022/benchmark.py +125 -0
  12. brainscore_vision/benchmarks/baker2022/requirements.txt +1 -0
  13. brainscore_vision/benchmarks/baker2022/test.py +90 -0
  14. brainscore_vision/benchmarks/bmd2024/__init__.py +8 -0
  15. brainscore_vision/benchmarks/bmd2024/benchmark.py +51 -0
  16. brainscore_vision/benchmarks/bmd2024/test.py +29 -0
  17. brainscore_vision/benchmarks/bracci2019/__init__.py +8 -0
  18. brainscore_vision/benchmarks/bracci2019/benchmark.py +286 -0
  19. brainscore_vision/benchmarks/bracci2019/requirements.txt +3 -0
  20. brainscore_vision/benchmarks/cadena2017/__init__.py +5 -0
  21. brainscore_vision/benchmarks/cadena2017/benchmark.py +91 -0
  22. brainscore_vision/benchmarks/cadena2017/test.py +35 -0
  23. brainscore_vision/benchmarks/coggan2024_behavior/__init__.py +8 -0
  24. brainscore_vision/benchmarks/coggan2024_behavior/benchmark.py +133 -0
  25. brainscore_vision/benchmarks/coggan2024_behavior/test.py +21 -0
  26. brainscore_vision/benchmarks/coggan2024_fMRI/__init__.py +15 -0
  27. brainscore_vision/benchmarks/coggan2024_fMRI/benchmark.py +201 -0
  28. brainscore_vision/benchmarks/coggan2024_fMRI/test.py +25 -0
  29. brainscore_vision/benchmarks/ferguson2024/__init__.py +24 -0
  30. brainscore_vision/benchmarks/ferguson2024/benchmark.py +210 -0
  31. brainscore_vision/benchmarks/ferguson2024/helpers/helpers.py +251 -0
  32. brainscore_vision/benchmarks/ferguson2024/requirements.txt +5 -0
  33. brainscore_vision/benchmarks/ferguson2024/test.py +114 -0
  34. brainscore_vision/benchmarks/freemanziemba2013/__init__.py +10 -0
  35. brainscore_vision/benchmarks/freemanziemba2013/benchmarks/benchmark.py +53 -0
  36. brainscore_vision/benchmarks/freemanziemba2013/benchmarks/public_benchmarks.py +37 -0
  37. brainscore_vision/benchmarks/freemanziemba2013/test.py +98 -0
  38. brainscore_vision/benchmarks/geirhos2021/__init__.py +59 -0
  39. brainscore_vision/benchmarks/geirhos2021/benchmark.py +132 -0
  40. brainscore_vision/benchmarks/geirhos2021/test.py +189 -0
  41. brainscore_vision/benchmarks/hebart2023/__init__.py +4 -0
  42. brainscore_vision/benchmarks/hebart2023/benchmark.py +72 -0
  43. brainscore_vision/benchmarks/hebart2023/test.py +19 -0
  44. brainscore_vision/benchmarks/hermann2020/__init__.py +6 -0
  45. brainscore_vision/benchmarks/hermann2020/benchmark.py +63 -0
  46. brainscore_vision/benchmarks/hermann2020/test.py +28 -0
  47. brainscore_vision/benchmarks/igustibagus2024/__init__.py +11 -0
  48. brainscore_vision/benchmarks/igustibagus2024/domain_transfer_analysis.py +306 -0
  49. brainscore_vision/benchmarks/igustibagus2024/domain_transfer_neural.py +134 -0
  50. brainscore_vision/benchmarks/igustibagus2024/test.py +45 -0
  51. brainscore_vision/benchmarks/imagenet/__init__.py +4 -0
  52. brainscore_vision/benchmarks/imagenet/benchmark.py +50 -0
  53. brainscore_vision/benchmarks/imagenet/imagenet2012.csv +50001 -0
  54. brainscore_vision/benchmarks/imagenet/test.py +32 -0
  55. brainscore_vision/benchmarks/imagenet_c/__init__.py +7 -0
  56. brainscore_vision/benchmarks/imagenet_c/benchmark.py +204 -0
  57. brainscore_vision/benchmarks/imagenet_c/test.py +57 -0
  58. brainscore_vision/benchmarks/islam2021/__init__.py +11 -0
  59. brainscore_vision/benchmarks/islam2021/benchmark.py +107 -0
  60. brainscore_vision/benchmarks/islam2021/test.py +47 -0
  61. brainscore_vision/benchmarks/kar2019/__init__.py +4 -0
  62. brainscore_vision/benchmarks/kar2019/benchmark.py +88 -0
  63. brainscore_vision/benchmarks/kar2019/test.py +93 -0
  64. brainscore_vision/benchmarks/majajhong2015/__init__.py +18 -0
  65. brainscore_vision/benchmarks/majajhong2015/benchmark.py +96 -0
  66. brainscore_vision/benchmarks/majajhong2015/test.py +103 -0
  67. brainscore_vision/benchmarks/malania2007/__init__.py +13 -0
  68. brainscore_vision/benchmarks/malania2007/benchmark.py +235 -0
  69. brainscore_vision/benchmarks/malania2007/test.py +64 -0
  70. brainscore_vision/benchmarks/maniquet2024/__init__.py +6 -0
  71. brainscore_vision/benchmarks/maniquet2024/benchmark.py +199 -0
  72. brainscore_vision/benchmarks/maniquet2024/test.py +17 -0
  73. brainscore_vision/benchmarks/marques2020/__init__.py +76 -0
  74. brainscore_vision/benchmarks/marques2020/benchmarks/cavanaugh2002a_benchmark.py +119 -0
  75. brainscore_vision/benchmarks/marques2020/benchmarks/devalois1982a_benchmark.py +84 -0
  76. brainscore_vision/benchmarks/marques2020/benchmarks/devalois1982b_benchmark.py +88 -0
  77. brainscore_vision/benchmarks/marques2020/benchmarks/freemanZiemba2013_benchmark.py +138 -0
  78. brainscore_vision/benchmarks/marques2020/benchmarks/ringach2002_benchmark.py +167 -0
  79. brainscore_vision/benchmarks/marques2020/benchmarks/schiller1976_benchmark.py +100 -0
  80. brainscore_vision/benchmarks/marques2020/test.py +135 -0
  81. brainscore_vision/benchmarks/objectnet/__init__.py +4 -0
  82. brainscore_vision/benchmarks/objectnet/benchmark.py +52 -0
  83. brainscore_vision/benchmarks/objectnet/test.py +33 -0
  84. brainscore_vision/benchmarks/rajalingham2018/__init__.py +10 -0
  85. brainscore_vision/benchmarks/rajalingham2018/benchmarks/benchmark.py +74 -0
  86. brainscore_vision/benchmarks/rajalingham2018/benchmarks/public_benchmark.py +10 -0
  87. brainscore_vision/benchmarks/rajalingham2018/test.py +125 -0
  88. brainscore_vision/benchmarks/rajalingham2018/test_resources/alexnet-probabilities.nc +0 -0
  89. brainscore_vision/benchmarks/rajalingham2018/test_resources/identifier=alexnet,stimuli_identifier=objectome-240.nc +0 -0
  90. brainscore_vision/benchmarks/rajalingham2018/test_resources/identifier=resnet18,stimuli_identifier=objectome-240.nc +0 -0
  91. brainscore_vision/benchmarks/rajalingham2018/test_resources/identifier=resnet34,stimuli_identifier=objectome-240.nc +0 -0
  92. brainscore_vision/benchmarks/rajalingham2018/test_resources/resnet18-probabilities.nc +0 -0
  93. brainscore_vision/benchmarks/rajalingham2018/test_resources/resnet34-probabilities.nc +0 -0
  94. brainscore_vision/benchmarks/rajalingham2020/__init__.py +4 -0
  95. brainscore_vision/benchmarks/rajalingham2020/benchmark.py +52 -0
  96. brainscore_vision/benchmarks/rajalingham2020/test.py +39 -0
  97. brainscore_vision/benchmarks/sanghavi2020/__init__.py +17 -0
  98. brainscore_vision/benchmarks/sanghavi2020/benchmarks/sanghavi2020_benchmark.py +44 -0
  99. brainscore_vision/benchmarks/sanghavi2020/benchmarks/sanghavijozwik2020_benchmark.py +44 -0
  100. brainscore_vision/benchmarks/sanghavi2020/benchmarks/sanghavimurty2020_benchmark.py +44 -0
  101. brainscore_vision/benchmarks/sanghavi2020/test.py +83 -0
  102. brainscore_vision/benchmarks/scialom2024/__init__.py +52 -0
  103. brainscore_vision/benchmarks/scialom2024/benchmark.py +97 -0
  104. brainscore_vision/benchmarks/scialom2024/test.py +162 -0
  105. brainscore_vision/data/__init__.py +0 -0
  106. brainscore_vision/data/baker2022/__init__.py +40 -0
  107. brainscore_vision/data/baker2022/data_packaging/inverted_distortion_data_assembly.py +43 -0
  108. brainscore_vision/data/baker2022/data_packaging/inverted_distortion_stimulus_set.py +81 -0
  109. brainscore_vision/data/baker2022/data_packaging/mapping.py +60 -0
  110. brainscore_vision/data/baker2022/data_packaging/normal_distortion_data_assembly.py +46 -0
  111. brainscore_vision/data/baker2022/data_packaging/normal_distortion_stimulus_set.py +94 -0
  112. brainscore_vision/data/baker2022/test.py +135 -0
  113. brainscore_vision/data/barbumayo2019/BarbuMayo2019.py +26 -0
  114. brainscore_vision/data/barbumayo2019/__init__.py +23 -0
  115. brainscore_vision/data/barbumayo2019/test.py +10 -0
  116. brainscore_vision/data/bashivankar2019/__init__.py +52 -0
  117. brainscore_vision/data/bashivankar2019/data_packaging/2020-08-17_npc_v4_data.h5.png +0 -0
  118. brainscore_vision/data/bashivankar2019/data_packaging/requirements.txt +4 -0
  119. brainscore_vision/data/bashivankar2019/data_packaging/synthetic.py +162 -0
  120. brainscore_vision/data/bashivankar2019/test.py +15 -0
  121. brainscore_vision/data/bmd2024/__init__.py +69 -0
  122. brainscore_vision/data/bmd2024/data_packaging/BMD_2024_data_assembly.py +91 -0
  123. brainscore_vision/data/bmd2024/data_packaging/BMD_2024_simulus_set.py +48 -0
  124. brainscore_vision/data/bmd2024/data_packaging/stim_meta.csv +401 -0
  125. brainscore_vision/data/bmd2024/test.py +130 -0
  126. brainscore_vision/data/bracci2019/__init__.py +36 -0
  127. brainscore_vision/data/bracci2019/data_packaging.py +221 -0
  128. brainscore_vision/data/bracci2019/test.py +16 -0
  129. brainscore_vision/data/cadena2017/__init__.py +52 -0
  130. brainscore_vision/data/cadena2017/data_packaging/2018-08-07_tolias_v1.ipynb +25880 -0
  131. brainscore_vision/data/cadena2017/data_packaging/analysis.py +26 -0
  132. brainscore_vision/data/cadena2017/test.py +24 -0
  133. brainscore_vision/data/cichy2019/__init__.py +38 -0
  134. brainscore_vision/data/cichy2019/test.py +8 -0
  135. brainscore_vision/data/coggan2024_behavior/__init__.py +36 -0
  136. brainscore_vision/data/coggan2024_behavior/data_packaging.py +166 -0
  137. brainscore_vision/data/coggan2024_behavior/test.py +32 -0
  138. brainscore_vision/data/coggan2024_fMRI/__init__.py +27 -0
  139. brainscore_vision/data/coggan2024_fMRI/data_packaging.py +123 -0
  140. brainscore_vision/data/coggan2024_fMRI/test.py +25 -0
  141. brainscore_vision/data/david2004/__init__.py +34 -0
  142. brainscore_vision/data/david2004/data_packaging/2018-05-10_gallant_data.ipynb +3647 -0
  143. brainscore_vision/data/david2004/data_packaging/2018-05-23_gallant_data.ipynb +3149 -0
  144. brainscore_vision/data/david2004/data_packaging/2018-06-05_gallant_data.ipynb +3628 -0
  145. brainscore_vision/data/david2004/data_packaging/__init__.py +61 -0
  146. brainscore_vision/data/david2004/data_packaging/convertGallant.m +100 -0
  147. brainscore_vision/data/david2004/data_packaging/convertGallantV1Aligned.m +58 -0
  148. brainscore_vision/data/david2004/data_packaging/lib/DataHash_20160618/DataHash.m +484 -0
  149. brainscore_vision/data/david2004/data_packaging/lib/DataHash_20160618/license.txt +24 -0
  150. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/GetMD5.c +895 -0
  151. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/GetMD5.m +107 -0
  152. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/GetMD5.mexw64 +0 -0
  153. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/GetMD5_helper.m +91 -0
  154. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/InstallMex.m +307 -0
  155. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/license.txt +24 -0
  156. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/uTest_GetMD5.m +290 -0
  157. brainscore_vision/data/david2004/data_packaging/lib/glob/glob.m +472 -0
  158. brainscore_vision/data/david2004/data_packaging/lib/glob/license.txt +27 -0
  159. brainscore_vision/data/david2004/data_packaging/xr_align_debug.py +137 -0
  160. brainscore_vision/data/david2004/test.py +8 -0
  161. brainscore_vision/data/deng2009/__init__.py +22 -0
  162. brainscore_vision/data/deng2009/deng2009imagenet.py +33 -0
  163. brainscore_vision/data/deng2009/test.py +9 -0
  164. brainscore_vision/data/ferguson2024/__init__.py +401 -0
  165. brainscore_vision/data/ferguson2024/data_packaging/data_packaging.py +164 -0
  166. brainscore_vision/data/ferguson2024/data_packaging/fitting_stimuli.py +20 -0
  167. brainscore_vision/data/ferguson2024/requirements.txt +2 -0
  168. brainscore_vision/data/ferguson2024/test.py +155 -0
  169. brainscore_vision/data/freemanziemba2013/__init__.py +133 -0
  170. brainscore_vision/data/freemanziemba2013/data_packaging/2018-10-05_movshon.ipynb +2002 -0
  171. brainscore_vision/data/freemanziemba2013/data_packaging/2020-02-21_movshon_aperture.ipynb +4730 -0
  172. brainscore_vision/data/freemanziemba2013/data_packaging/2020-02-26_movshon_aperture_test.ipynb +2228 -0
  173. brainscore_vision/data/freemanziemba2013/data_packaging/aperture_correct.py +160 -0
  174. brainscore_vision/data/freemanziemba2013/data_packaging/data_packaging.py +57 -0
  175. brainscore_vision/data/freemanziemba2013/data_packaging/movshon.py +202 -0
  176. brainscore_vision/data/freemanziemba2013/test.py +97 -0
  177. brainscore_vision/data/geirhos2021/__init__.py +358 -0
  178. brainscore_vision/data/geirhos2021/creating_geirhos_ids.ipynb +468 -0
  179. brainscore_vision/data/geirhos2021/data_packaging/colour/colour_data_assembly.py +87 -0
  180. brainscore_vision/data/geirhos2021/data_packaging/colour/colour_stimulus_set.py +81 -0
  181. brainscore_vision/data/geirhos2021/data_packaging/contrast/contrast_data_assembly.py +83 -0
  182. brainscore_vision/data/geirhos2021/data_packaging/contrast/contrast_stimulus_set.py +82 -0
  183. brainscore_vision/data/geirhos2021/data_packaging/cue-conflict/cue-conflict_data_assembly.py +100 -0
  184. brainscore_vision/data/geirhos2021/data_packaging/cue-conflict/cue-conflict_stimulus_set.py +84 -0
  185. brainscore_vision/data/geirhos2021/data_packaging/edge/edge_data_assembly.py +96 -0
  186. brainscore_vision/data/geirhos2021/data_packaging/edge/edge_stimulus_set.py +69 -0
  187. brainscore_vision/data/geirhos2021/data_packaging/eidolonI/eidolonI_data_assembly.py +92 -0
  188. brainscore_vision/data/geirhos2021/data_packaging/eidolonI/eidolonI_stimulus_set.py +82 -0
  189. brainscore_vision/data/geirhos2021/data_packaging/eidolonII/eidolonII_data_assembly.py +92 -0
  190. brainscore_vision/data/geirhos2021/data_packaging/eidolonII/eidolonII_stimulus_set.py +82 -0
  191. brainscore_vision/data/geirhos2021/data_packaging/eidolonIII/eidolonIII_data_assembly.py +92 -0
  192. brainscore_vision/data/geirhos2021/data_packaging/eidolonIII/eidolonIII_stimulus_set.py +82 -0
  193. brainscore_vision/data/geirhos2021/data_packaging/false-colour/false-colour_data_assembly.py +83 -0
  194. brainscore_vision/data/geirhos2021/data_packaging/false-colour/false-colour_stimulus_set.py +87 -0
  195. brainscore_vision/data/geirhos2021/data_packaging/high-pass/high-pass_data_assembly.py +84 -0
  196. brainscore_vision/data/geirhos2021/data_packaging/high-pass/high-pass_stimulus_set.py +82 -0
  197. brainscore_vision/data/geirhos2021/data_packaging/low-pass/low-pass_data_assembly.py +84 -0
  198. brainscore_vision/data/geirhos2021/data_packaging/low-pass/low-pass_stimulus_set.py +81 -0
  199. brainscore_vision/data/geirhos2021/data_packaging/phase-scrambling/phase-scrambling_data_assembly.py +84 -0
  200. brainscore_vision/data/geirhos2021/data_packaging/phase-scrambling/phase-scrambling_stimulus_set.py +82 -0
  201. brainscore_vision/data/geirhos2021/data_packaging/power-equalisation/power-equalisation_data_assembly.py +88 -0
  202. brainscore_vision/data/geirhos2021/data_packaging/power-equalisation/power-equalisation_stimulus_set.py +82 -0
  203. brainscore_vision/data/geirhos2021/data_packaging/rotation/rotation_data_assembly.py +87 -0
  204. brainscore_vision/data/geirhos2021/data_packaging/rotation/rotation_stimulus_set.py +82 -0
  205. brainscore_vision/data/geirhos2021/data_packaging/silhouette/silhouette_data_assembly.py +100 -0
  206. brainscore_vision/data/geirhos2021/data_packaging/silhouette/silhouette_stimulus_set.py +71 -0
  207. brainscore_vision/data/geirhos2021/data_packaging/sketch/sketch_data_assembly.py +88 -0
  208. brainscore_vision/data/geirhos2021/data_packaging/sketch/sketch_stimulus_set.py +75 -0
  209. brainscore_vision/data/geirhos2021/data_packaging/stylized/stylized_data_assembly.py +87 -0
  210. brainscore_vision/data/geirhos2021/data_packaging/stylized/stylized_stimulus_set.py +75 -0
  211. brainscore_vision/data/geirhos2021/data_packaging/uniform-noise/uniform-noise_data_assembly.py +86 -0
  212. brainscore_vision/data/geirhos2021/data_packaging/uniform-noise/uniform-noise_stimulus_set.py +82 -0
  213. brainscore_vision/data/geirhos2021/geirhos_hashes.csv +52 -0
  214. brainscore_vision/data/geirhos2021/test.py +330 -0
  215. brainscore_vision/data/hebart2023/__init__.py +23 -0
  216. brainscore_vision/data/hebart2023/packaging/data_assembly.py +40 -0
  217. brainscore_vision/data/hebart2023/packaging/stimulus_set.py +72 -0
  218. brainscore_vision/data/hebart2023/test.py +42 -0
  219. brainscore_vision/data/hendrycks2019/__init__.py +45 -0
  220. brainscore_vision/data/hendrycks2019/test.py +26 -0
  221. brainscore_vision/data/igustibagus2024/__init__.py +23 -0
  222. brainscore_vision/data/igustibagus2024/dependencies/data_pico/stimulus_dicarlo_domain_transfer.csv +3139 -0
  223. brainscore_vision/data/igustibagus2024/investigation_consistency.ipynb +346 -0
  224. brainscore_vision/data/igustibagus2024/merged_assembly/__init__.py +0 -0
  225. brainscore_vision/data/igustibagus2024/merged_assembly/create_merged_assembly.ipynb +649 -0
  226. brainscore_vision/data/igustibagus2024/merged_assembly/create_merged_assembly_and_stim.py +152 -0
  227. brainscore_vision/data/igustibagus2024/merged_assembly/create_stimulus_set_with_background-id.py +45 -0
  228. brainscore_vision/data/igustibagus2024/merged_assembly/helpers_background_id.py +849 -0
  229. brainscore_vision/data/igustibagus2024/merged_assembly/merged_stimulus_set.csv +3139 -0
  230. brainscore_vision/data/igustibagus2024/oleo_pico_exploration.ipynb +410 -0
  231. brainscore_vision/data/igustibagus2024/test.py +26 -0
  232. brainscore_vision/data/imagenetslim15000/ImageNetSlim15000.py +30 -0
  233. brainscore_vision/data/imagenetslim15000/__init__.py +11 -0
  234. brainscore_vision/data/imagenetslim15000/test.py +8 -0
  235. brainscore_vision/data/islam2021/__init__.py +18 -0
  236. brainscore_vision/data/islam2021/data_packaging.py +64 -0
  237. brainscore_vision/data/islam2021/test.py +11 -0
  238. brainscore_vision/data/kar2018/__init__.py +58 -0
  239. brainscore_vision/data/kar2018/data_packaging/kar_coco.py +97 -0
  240. brainscore_vision/data/kar2018/data_packaging/kar_hvm.py +77 -0
  241. brainscore_vision/data/kar2018/data_packaging/requirements.txt +1 -0
  242. brainscore_vision/data/kar2018/test.py +10 -0
  243. brainscore_vision/data/kar2019/__init__.py +43 -0
  244. brainscore_vision/data/kar2019/data_packaging.py +116 -0
  245. brainscore_vision/data/kar2019/test.py +8 -0
  246. brainscore_vision/data/kuzovkin2018/__init__.py +36 -0
  247. brainscore_vision/data/kuzovkin2018/createAssembliesBrainScore.py +103 -0
  248. brainscore_vision/data/kuzovkin2018/test.py +8 -0
  249. brainscore_vision/data/majajhong2015/__init__.py +113 -0
  250. brainscore_vision/data/majajhong2015/data_packaging/darren10ms.py +32 -0
  251. brainscore_vision/data/majajhong2015/data_packaging/data_packaging.py +65 -0
  252. brainscore_vision/data/majajhong2015/test.py +38 -0
  253. brainscore_vision/data/malania2007/__init__.py +254 -0
  254. brainscore_vision/data/malania2007/data_packaging/malania_data_assembly.py +79 -0
  255. brainscore_vision/data/malania2007/data_packaging/malania_stimulus_set.py +79 -0
  256. brainscore_vision/data/malania2007/test.py +147 -0
  257. brainscore_vision/data/maniquet2024/__init__.py +57 -0
  258. brainscore_vision/data/maniquet2024/data_packaging.py +151 -0
  259. brainscore_vision/data/maniquet2024/test.py +16 -0
  260. brainscore_vision/data/marques2020/__init__.py +123 -0
  261. brainscore_vision/data/marques2020/data_packaging/marques_cavanaugh2002a.py +84 -0
  262. brainscore_vision/data/marques2020/data_packaging/marques_devalois1982a.py +44 -0
  263. brainscore_vision/data/marques2020/data_packaging/marques_devalois1982b.py +54 -0
  264. brainscore_vision/data/marques2020/data_packaging/marques_freemanZiemba2013.py +252 -0
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  951. brainscore_vision-2.1.dist-info/RECORD +1009 -0
  952. brainscore_vision-2.1.dist-info/WHEEL +5 -0
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  955. docs/source/conf.py +78 -0
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  989. tests/test_model_helpers/brain_transformation/test_neural.py +70 -0
  990. tests/test_model_helpers/brain_transformation/test_temporal.py +66 -0
  991. tests/test_model_helpers/temporal/__init__.py +0 -0
  992. tests/test_model_helpers/temporal/activations/__init__.py +0 -0
  993. tests/test_model_helpers/temporal/activations/test_extractor.py +96 -0
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  995. tests/test_model_helpers/temporal/activations/test_inputs.py +103 -0
  996. tests/test_model_helpers/temporal/brain_transformation/__init__.py +0 -0
  997. tests/test_model_helpers/temporal/brain_transformation/test_temporal_ops.py +122 -0
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  999. tests/test_model_helpers/test_generic_plugin_tests.py +310 -0
  1000. tests/test_model_helpers/test_imports.py +10 -0
  1001. tests/test_model_helpers/test_s3.py +38 -0
  1002. tests/test_models.py +15 -0
  1003. tests/test_stimuli.py +0 -0
  1004. tests/test_submission/__init__.py +0 -0
  1005. tests/test_submission/mock_config.py +3 -0
  1006. tests/test_submission/test_actions_helpers.py +67 -0
  1007. tests/test_submission/test_db.py +54 -0
  1008. tests/test_submission/test_endpoints.py +125 -0
  1009. tests/test_utils.py +21 -0
@@ -0,0 +1,109 @@
1
+ import itertools
2
+
3
+ import numpy as np
4
+
5
+ from brainio.assemblies import BehavioralAssembly
6
+ from brainscore_core import Metric
7
+ from brainscore_vision.metrics import Score
8
+ from brainscore_vision.metric_helpers.transformations import apply_aggregate
9
+
10
+
11
+ class AccuracyDistance(Metric):
12
+ """
13
+ Computes the accuracy distance using the relative distance between the
14
+ source and target accuracies, adjusted for the maximum possible
15
+ difference between the two accuracies. By default, the distance is computed
16
+ from a single accuracy score on the entire BehavioralAssembly. However,
17
+ the distance can also be computed on a condition-wise basis using the
18
+ 'variables' argument. The advantage of the condition-wise approach is that
19
+ it can separate two models with identical overall accuracy if one exhibits a
20
+ more target-like pattern of performance across conditions.
21
+ """
22
+ def __call__(self, source: BehavioralAssembly, target:
23
+ BehavioralAssembly, variables: tuple=()) -> Score:
24
+ """Target should be the entire BehavioralAssembly, containing truth values."""
25
+
26
+ subjects = self.extract_subjects(target)
27
+ subject_scores = []
28
+ for subject in subjects:
29
+ subject_assembly = target.sel(subject=subject)
30
+
31
+ # compute single score across the entire dataset
32
+ if len(variables) == 0:
33
+ subject_score = self.compare_single_subject(source, subject_assembly)
34
+
35
+ # compute scores for each condition, then average
36
+ else:
37
+ cond_scores = []
38
+
39
+ # get iterator across all combinations of variables
40
+ if len(variables) == 1:
41
+ conditions = set(subject_assembly[variables[0]].values)
42
+ conditions = [[c] for c in conditions] # to mimic itertools.product
43
+ else:
44
+ conditions = itertools.product(
45
+ *[set(subject_assembly[v].values) for v in variables])
46
+
47
+ # loop over conditions and compute scores
48
+ for cond in conditions:
49
+ indexers = {v: cond[i] for i, v in enumerate(variables)}
50
+ subject_cond_assembly = subject_assembly.sel(**indexers)
51
+ source_cond_assembly = source.sel(**indexers)
52
+ # to accomodate unbalanced designs, skip combinations of
53
+ # variables that don't exist in both assemblies
54
+ if len(subject_cond_assembly) and len(source_cond_assembly):
55
+ cond_scores.append(self.compare_single_subject(
56
+ source_cond_assembly, subject_cond_assembly))
57
+ subject_score = Score(np.mean(cond_scores))
58
+
59
+ subject_score = subject_score.expand_dims('subject')
60
+ subject_score['subject'] = 'subject', [subject]
61
+ subject_scores.append(subject_score)
62
+
63
+ subject_scores = Score.merge(*subject_scores)
64
+ subject_scores = apply_aggregate(aggregate_fnc=self.aggregate, values=subject_scores)
65
+ return subject_scores
66
+
67
+ @classmethod
68
+ def aggregate(cls, scores):
69
+ mean = scores.mean('subject')
70
+ score = abs(mean) # avoid negative scores just in case
71
+ score.attrs['error'] = scores.std('subject')
72
+ return score
73
+
74
+ def compare_single_subject(self, source: BehavioralAssembly, target: BehavioralAssembly):
75
+ source = source.sortby('stimulus_id')
76
+ target = target.sortby('stimulus_id')
77
+ assert (target['stimulus_id'].values == source['stimulus_id'].values).all()
78
+
79
+ # .flatten() because models return lists of lists, and here we compare subject-by-subject
80
+ source_correct = source.values.flatten() == target['truth'].values
81
+ target_correct = target.values == target['truth'].values
82
+ source_mean = sum(source_correct) / len(source_correct)
83
+ target_mean = sum(target_correct) / len(target_correct)
84
+
85
+ maximum_distance = np.max([1 - target_mean, target_mean])
86
+ # get the proportion of the distance between the source and target accuracies, adjusted for the maximum possible
87
+ # difference between the two accuracies
88
+ relative_distance = 1 - np.abs(source_mean - target_mean) / maximum_distance
89
+
90
+ return Score(relative_distance)
91
+
92
+ def ceiling(self, assembly):
93
+ subjects = self.extract_subjects(assembly)
94
+ subject_scores = []
95
+ for subject1, subject2 in itertools.combinations(subjects, 2):
96
+ subject1_assembly = assembly.sel(subject=subject1)
97
+ subject2_assembly = assembly.sel(subject=subject2)
98
+ pairwise_score = self.compare_single_subject(subject1_assembly, subject2_assembly)
99
+ pairwise_score = pairwise_score.expand_dims('subject')
100
+ pairwise_score['subject_left'] = 'subject', [subject1]
101
+ pairwise_score['subject_right'] = 'subject', [subject2]
102
+ subject_scores.append(Score(pairwise_score))
103
+
104
+ subject_scores = Score.merge(*subject_scores)
105
+ subject_scores = apply_aggregate(aggregate_fnc=self.aggregate, values=subject_scores)
106
+ return subject_scores
107
+
108
+ def extract_subjects(self, assembly):
109
+ return list(sorted(set(assembly['subject'].values)))
@@ -0,0 +1,57 @@
1
+ import numpy as np
2
+ from pytest import approx
3
+
4
+ from brainio.assemblies import BehavioralAssembly
5
+ from brainscore_vision import load_metric
6
+
7
+
8
+ def test_score():
9
+ assembly = _make_data()
10
+ metric = load_metric('accuracy_distance')
11
+ score = metric(assembly.sel(subject='A'), assembly)
12
+ assert score == approx(0.74074074)
13
+
14
+
15
+ def test_score_single_variable():
16
+ assembly = _make_data()
17
+ metric = load_metric('accuracy_distance')
18
+ score = metric(assembly.sel(subject='C'), assembly, ('condition',))
19
+ assert score == approx(0.55555556)
20
+
21
+
22
+ def test_score_multi_variable():
23
+ assembly = _make_data()
24
+ metric = load_metric('accuracy_distance')
25
+ score = metric(assembly.sel(subject='C'), assembly, ('condition','animacy'))
26
+ assert score == approx(0.55555556)
27
+
28
+
29
+ def test_has_error():
30
+ assembly = _make_data()
31
+ metric = load_metric('accuracy_distance')
32
+ score = metric(assembly.sel(subject='A'), assembly)
33
+ assert hasattr(score, 'error')
34
+
35
+
36
+ def test_raw_subjects():
37
+ assembly = _make_data()
38
+ metric = load_metric('accuracy_distance')
39
+ score = metric(assembly.sel(subject='A'), assembly)
40
+ subject_scores = score.raw
41
+ assert subject_scores.sel(subject='A') == 1.
42
+
43
+
44
+ def _make_data():
45
+ # subject A is 5 / 9 = 0.55...% correct
46
+ # subject B is 4 / 9 = 0.44...% correct
47
+ # subject C is 9 / 9 = 100% correct
48
+ return BehavioralAssembly(['dog', 'cat', 'chair', 'cat', 'dog', 'dog', 'dog', 'dog', 'chair', # subject A
49
+ 'cat', 'cat', 'chair', 'cat', 'dog', 'cat', 'chair', 'cat', 'cat', # subject B
50
+ 'dog', 'cat', 'chair', 'dog', 'cat', 'chair', 'dog', 'cat', 'chair' # subject C
51
+ ],
52
+ coords={'stimulus_id': ('presentation', np.resize(np.arange(9), 9 * 3)),
53
+ 'truth': ('presentation', np.resize(['dog', 'cat', 'chair'], 9 * 3)),
54
+ 'condition': ('presentation', np.resize([1, 1, 1, 2, 2, 2, 3, 3, 3], 9 * 3)),
55
+ 'animacy': ('presentation', np.resize(['animate', 'animate', 'inanimate'], 9 * 3)),
56
+ 'subject': ('presentation', ['A'] * 9 + ['B'] * 9 + ['C'] * 9)},
57
+ dims=['presentation'])
@@ -0,0 +1,4 @@
1
+ from brainscore_vision import metric_registry
2
+ from .metric import BakerAccuracyDelta
3
+
4
+ metric_registry['baker_accuracy_delta'] = BakerAccuracyDelta
@@ -0,0 +1,94 @@
1
+ from typing import List
2
+
3
+ import numpy as np
4
+
5
+ from brainio.assemblies import BehavioralAssembly
6
+ from brainscore_core import Metric, Score
7
+
8
+ # controls how many half-splits are averaged together to get human delta.
9
+ HUMAN_SPLITS = 100
10
+
11
+
12
+ class BakerAccuracyDelta(Metric):
13
+ def __init__(self, image_types: list):
14
+ self.image_types = image_types
15
+
16
+ def __call__(self, source: BehavioralAssembly, target: BehavioralAssembly):
17
+ model_delta = get_model_delta(source, self.image_types)
18
+ scores = []
19
+
20
+ # calculate score over average of 100 sub splits of human delta
21
+ for i in range(HUMAN_SPLITS):
22
+ # grab one half of the subjeects
23
+ random_state = np.random.RandomState(i)
24
+ num_subjects = len(set(target["subject"].values))
25
+ half1_subjects = random_state.choice(range(1, num_subjects), (num_subjects // 2), replace=False)
26
+ half1 = target[{'presentation': [subject in half1_subjects for subject in target['subject'].values]}]
27
+
28
+ human_delta = get_human_delta(half1, self.image_types)
29
+ score = max((1 - ((np.abs(human_delta - model_delta)) / human_delta)), 0)
30
+ scores.append(score)
31
+ score = np.mean(scores)
32
+ error = np.std(scores)
33
+
34
+ score = Score(score)
35
+ score.attrs['error'] = error
36
+ score.attrs['raw'] = scores
37
+ return score
38
+
39
+ def compute_ceiling(self, source: BehavioralAssembly, target: BehavioralAssembly, image_types: List[str]) -> float:
40
+ half_1_delta = get_human_delta(target=source, image_types=image_types)
41
+ half_2_delta = get_human_delta(target=target, image_types=image_types)
42
+ ceiling = max((1 - ((np.abs(half_1_delta - half_2_delta)) / half_2_delta)), 0)
43
+ return ceiling
44
+
45
+
46
+ def extract_subjects(assembly):
47
+ return list(sorted(set(assembly['subject'].values)))
48
+
49
+
50
+ def get_human_delta(target, image_types):
51
+ # calculate human accuracies for [whole, condition]
52
+ condition_scores_human = {}
53
+
54
+ # for whole condition, and other condition (frankenstein or fragmented)
55
+ for image_type in image_types:
56
+ scores = []
57
+
58
+ # get per subject accuracy
59
+ for subject in extract_subjects(target):
60
+ this_target = target.sel(image_type=image_type, subject=subject)
61
+ correct_count = np.count_nonzero(this_target.values)
62
+ accuracy = correct_count / len(this_target)
63
+ scores.append(accuracy)
64
+ condition_scores_human[image_type] = scores
65
+
66
+ # calculate 16-human pairwise accuracy:
67
+ condition = image_types[1]
68
+ delta_vector = [a_i - b_i for a_i, b_i in zip(condition_scores_human["w"], condition_scores_human[condition])]
69
+
70
+ # return mean of delta vector. This is equal to the mean of half of subject deltas (random half)
71
+ return np.mean(delta_vector)
72
+
73
+
74
+ def get_model_delta(source, image_types):
75
+ condition_scores_model = []
76
+
77
+ # for whole condition, and other condition (frank or frag)
78
+ for image_type in image_types:
79
+
80
+ # raw network accuracy per category
81
+ scores = []
82
+ for category in sorted(set(source['animal'].values)):
83
+ this_source = source.sel(animal=category, image_type=image_type)
84
+ correct_count = (this_source.values == category).sum()
85
+ accuracy = correct_count / len(this_source[0])
86
+ scores.append(accuracy)
87
+
88
+ # overall accuracy, averaged over 9 categories
89
+ overall = np.mean(scores)
90
+ condition_scores_model.append(overall)
91
+
92
+ # return difference between whole and condition
93
+ model_delta = condition_scores_model[0] - condition_scores_model[1]
94
+ return model_delta
@@ -0,0 +1 @@
1
+ # tests part of /benchmarks/baker2022/test.py, omitted here
@@ -0,0 +1,14 @@
1
+ from brainscore_vision import metric_registry
2
+ from .metric import CKA, CKACrossValidated
3
+
4
+ metric_registry['cka'] = CKA
5
+ metric_registry['cka_cv'] = CKACrossValidated
6
+
7
+ BIBTEX = """@inproceedings{kornblith2019similarity,
8
+ title={Similarity of neural network representations revisited},
9
+ author={Kornblith, Simon and Norouzi, Mohammad and Lee, Honglak and Hinton, Geoffrey},
10
+ booktitle={International conference on machine learning},
11
+ pages={3519--3529},
12
+ year={2019},
13
+ organization={PMLR}
14
+ }"""
@@ -0,0 +1,105 @@
1
+ import math
2
+
3
+ import numpy as np
4
+
5
+ from brainio.assemblies import DataAssembly
6
+ from brainscore_core import Metric
7
+ from brainscore_vision.metric_helpers import Defaults as XarrayDefaults
8
+ from brainscore_vision.metric_helpers.transformations import TestOnlyCrossValidation, apply_aggregate
9
+ from brainscore_vision.metrics import Score
10
+
11
+
12
+ class CKACrossValidated(Metric):
13
+ """
14
+ Computes a cross-validated similarity index for the similarity between two assemblies
15
+ with centered kernel alignment (CKA).
16
+
17
+ Kornblith et al., 2019 http://proceedings.mlr.press/v97/kornblith19a/kornblith19a.pdf
18
+ """
19
+
20
+ def __init__(self, comparison_coord=XarrayDefaults.stimulus_coord, crossvalidation_kwargs=None):
21
+ self._metric = CKA(comparison_coord=comparison_coord)
22
+ crossvalidation_defaults = dict(test_size=.9) # leave 10% out
23
+ crossvalidation_kwargs = {**crossvalidation_defaults, **(crossvalidation_kwargs or {})}
24
+ self._cross_validation = TestOnlyCrossValidation(**crossvalidation_kwargs)
25
+
26
+ def __call__(self, assembly1: DataAssembly, assembly2: DataAssembly) -> Score:
27
+ return self._cross_validation(assembly1, assembly2, apply=self._metric)
28
+
29
+
30
+ class CKA(Metric):
31
+ """
32
+ Computes a similarity index for the similarity between two assemblies with centered kernel alignment (CKA).
33
+
34
+ Kornblith et al., 2019 http://proceedings.mlr.press/v97/kornblith19a/kornblith19a.pdf
35
+ """
36
+
37
+ def __init__(self, comparison_coord=XarrayDefaults.stimulus_coord):
38
+ self._comparison_coord = comparison_coord
39
+
40
+ def __call__(self, assembly1: DataAssembly, assembly2: DataAssembly) -> Score:
41
+ """
42
+ :param brainscore.assemblies.NeuroidAssembly assembly1:
43
+ :param brainscore.assemblies.NeuroidAssembly assembly2:
44
+ :return: brainscore.assemblies.DataAssembly
45
+ """
46
+ # ensure value order
47
+ assembly1 = assembly1.sortby(self._comparison_coord)
48
+ assembly2 = assembly2.sortby(self._comparison_coord)
49
+ assert (assembly1[self._comparison_coord].values == assembly2[self._comparison_coord].values).all()
50
+ # ensure dimensions order
51
+ dims = assembly1[self._comparison_coord].dims
52
+ np.testing.assert_array_equal(assembly2[self._comparison_coord].dims, dims)
53
+ assembly1 = assembly1.transpose(*(list(dims) + [dim for dim in assembly1.dims if dim not in dims]))
54
+ assembly2 = assembly2.transpose(*(list(dims) + [dim for dim in assembly2.dims if dim not in dims]))
55
+ similarity = linear_CKA(assembly1, assembly2)
56
+ return Score(similarity)
57
+
58
+
59
+ def centering(K):
60
+ n = K.shape[0]
61
+ unit = np.ones([n, n])
62
+ I = np.eye(n)
63
+ H = I - unit / n
64
+
65
+ return np.dot(np.dot(H, K), H)
66
+ # HKH are the same with KH, KH is the first centering, H(KH) do the second time,
67
+ # results are the sme with one time centering
68
+ # return np.dot(H, K) # KH
69
+
70
+
71
+ def rbf(X, sigma=None):
72
+ GX = np.dot(X, X.T)
73
+ KX = np.diag(GX) - GX + (np.diag(GX) - GX).T
74
+ if sigma is None:
75
+ mdist = np.median(KX[KX != 0])
76
+ sigma = math.sqrt(mdist)
77
+ KX *= - 0.5 / (sigma * sigma)
78
+ KX = np.exp(KX)
79
+ return KX
80
+
81
+
82
+ def kernel_HSIC(X, Y, sigma):
83
+ return np.sum(centering(rbf(X, sigma)) * centering(rbf(Y, sigma)))
84
+
85
+
86
+ def linear_HSIC(X, Y):
87
+ L_X = np.dot(X, X.T)
88
+ L_Y = np.dot(Y, Y.T)
89
+ return np.sum(centering(L_X) * centering(L_Y))
90
+
91
+
92
+ def linear_CKA(X, Y):
93
+ hsic = linear_HSIC(X, Y)
94
+ var1 = np.sqrt(linear_HSIC(X, X))
95
+ var2 = np.sqrt(linear_HSIC(Y, Y))
96
+
97
+ return hsic / (var1 * var2)
98
+
99
+
100
+ def kernel_CKA(X, Y, sigma=None):
101
+ hsic = kernel_HSIC(X, Y, sigma)
102
+ var1 = np.sqrt(kernel_HSIC(X, X, sigma))
103
+ var2 = np.sqrt(kernel_HSIC(Y, Y, sigma))
104
+
105
+ return hsic / (var1 * var2)
@@ -0,0 +1,28 @@
1
+ import numpy as np
2
+ from numpy.random import RandomState
3
+ from pytest import approx
4
+
5
+ from brainio.assemblies import DataAssembly
6
+ from brainscore_vision import load_metric
7
+
8
+
9
+ def _make_data():
10
+ rnd = RandomState(1)
11
+ return DataAssembly(rnd.uniform(size=(300, 10)), coords={
12
+ 'stimulus_id': ('presentation', np.arange(300)), 'category': ('presentation', ['dummy'] * 300),
13
+ 'neuroid_id': ('neuroid', np.arange(10)), 'region': ('neuroid', ['Vdummy'] * 10)},
14
+ dims=['presentation', 'neuroid'])
15
+
16
+
17
+ def test_identity():
18
+ cka = load_metric('cka')
19
+ assembly = _make_data()
20
+ similarity = cka(assembly, assembly)
21
+ assert similarity == approx(1)
22
+
23
+
24
+ def test_crossvalidated_has_error():
25
+ assembly = _make_data()
26
+ ckacv = load_metric('cka_cv', crossvalidation_kwargs=dict(stratification_coord=None))
27
+ similarity = ckacv(assembly, assembly)
28
+ assert hasattr(similarity, 'error')
@@ -0,0 +1,13 @@
1
+ from brainscore_vision import metric_registry
2
+ from .metric import Dimensionality
3
+
4
+ metric_registry['factor_dimensionality'] = Dimensionality
5
+
6
+ BIBTEX = """@inproceedings{esser2020disentangling,
7
+ title={A disentangling invertible interpretation network for explaining latent representations},
8
+ author={Esser, Patrick and Rombach, Robin and Ommer, Bjorn},
9
+ booktitle={Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition},
10
+ pages={9223--9232},
11
+ year={2020},
12
+ url={https://arxiv.org/abs/2004.13166}
13
+ }"""
@@ -0,0 +1,45 @@
1
+ import numpy as np
2
+ from brainscore_core import Metric, Score
3
+
4
+
5
+ class Dimensionality(Metric):
6
+ def __init__(self, factor):
7
+ self.factor = factor #factor to return
8
+
9
+ def __call__(self, assembly1, assembly2) -> Score:
10
+ #each assembly should have 3 dimensions: (factor, sample_num, neuron_i)
11
+ dims_percent = self._dim_est(assembly1,assembly2)
12
+ factor_dim = dims_percent[self.factor]
13
+ return Score(factor_dim)
14
+
15
+ def _dim_est(self, za, zb):
16
+ score_by_factor = dict()
17
+ zall = np.concatenate([za,zb], 0)
18
+ mean = np.mean(zall, 0, keepdims=True) #mean and variance per neuron
19
+ var = np.sum(np.mean((zall-mean)*(zall-mean), 0))
20
+ for f in set(za["factor"].values):
21
+ za_factor = za[za.factor == f].values
22
+ zb_factor = zb[zb.factor == f].values
23
+ mean_f_factor = 0.5*(np.mean(za_factor, 0, keepdims=True)+np.mean(zb_factor, 0, keepdims=True))
24
+ cov_f_factor = np.mean((za_factor-mean_f_factor)*(zb_factor-mean_f_factor), 0)
25
+ raw_score_f_factor = np.sum(cov_f_factor)
26
+ score_by_factor[f] = raw_score_f_factor/var
27
+
28
+ assert "residual" not in score_by_factor
29
+ score_by_factor["residual"] = 1.0 #by default
30
+ score_names = score_by_factor.keys()
31
+ scores = np.fromiter(score_by_factor.values(),dtype=float)
32
+ dims_percent = self._softmax_dim(score_names,scores,za.shape[1])
33
+ return dims_percent
34
+
35
+ def _softmax_dim(self, score_names, scores, N):
36
+ m = np.max(scores)
37
+ e = np.exp(scores-m)
38
+ softmaxed = e / np.sum(e)
39
+ dim = N
40
+ dims = [int(s*dim) for s in softmaxed]
41
+ dims[-1] = dim - sum(dims[:-1])
42
+ dims_percent = {}
43
+ for name, i in zip(score_names,range(len(scores))):
44
+ dims_percent[name] = dims[i] / sum(dims)
45
+ return dims_percent
@@ -0,0 +1,14 @@
1
+ from brainscore_vision import metric_registry
2
+ from .metric import BootstrapDistributionSimilarity, NeuronalPropertyCeiling
3
+
4
+ metric_registry['ks_similarity'] = BootstrapDistributionSimilarity
5
+ metric_registry['property_ceiling'] = NeuronalPropertyCeiling
6
+
7
+ BIBTEX = """@article{marques2021multi,
8
+ title={Multi-scale hierarchical neural network models that bridge from single neurons in the primate primary visual cortex to object recognition behavior},
9
+ author={Marques, Tiago and Schrimpf, Martin and DiCarlo, James J},
10
+ journal={bioRxiv},
11
+ pages={2021--03},
12
+ year={2021},
13
+ publisher={Cold Spring Harbor Laboratory}
14
+ }"""
@@ -0,0 +1,84 @@
1
+ import numpy as np
2
+
3
+ from brainio.assemblies import PropertyAssembly
4
+ from brainscore_core.metrics import Metric, Score
5
+
6
+ NSAMPLES = 1000
7
+
8
+
9
+ def ks_similarity(p, q):
10
+ z1 = np.zeros_like(p)
11
+ z2 = np.zeros_like(p)
12
+ z1[0] = 1
13
+ z2[-1] = 1
14
+
15
+ kolm_raw = np.max(np.abs(np.cumsum(p) - np.cumsum(q)))
16
+ kolm_max1 = np.max(np.abs(np.cumsum(z1) - np.cumsum(q)))
17
+ kolm_max2 = np.max(np.abs(np.cumsum(z2) - np.cumsum(q)))
18
+ kolm_max = np.max(np.array([kolm_max1, kolm_max2]))
19
+ kolm_ceiled = kolm_raw / kolm_max
20
+
21
+ return 1 - kolm_ceiled
22
+
23
+
24
+ class BootstrapDistributionSimilarity(Metric):
25
+ def __init__(self, property_name, similarity_func=ks_similarity, ns=NSAMPLES):
26
+ self.similarity_func = similarity_func
27
+ self.property_name = property_name
28
+ self.ns = ns
29
+
30
+ def __call__(self, model_property, data_property):
31
+ bins = data_property.attrs[self.property_name + '_bins']
32
+ data_property = data_property.loc[:, self.property_name].values
33
+ model_property = model_property.loc[:, self.property_name].values
34
+
35
+ data_property[data_property < bins[0]] = bins[0]
36
+ data_property[data_property > bins[-1]] = bins[-1]
37
+ model_property[model_property < bins[0]] = bins[0]
38
+ model_property[model_property > bins[-1]] = bins[-1]
39
+
40
+ n_neurons = data_property.shape[0]
41
+
42
+ data_hist = np.histogram(data_property, bins=bins)[0]
43
+ data_hist = data_hist / data_hist.sum()
44
+
45
+ model_hist = np.zeros((self.ns, data_hist.shape[0]))
46
+ dist_similarity = np.zeros(self.ns)
47
+
48
+ for s in range(self.ns):
49
+ sample = np.random.choice(model_property, n_neurons)
50
+ model_hist[s, :] = np.histogram(sample, bins=bins)[0]
51
+ model_hist[s, :] = model_hist[s, :] / model_hist[s, :].sum()
52
+ dist_similarity[s] = self.similarity_func(model_hist[s, :], data_hist)
53
+
54
+ if np.isnan(dist_similarity).sum() > NSAMPLES / 10:
55
+ center = 0
56
+ error = 0
57
+ else:
58
+ center = np.nanmean(dist_similarity)
59
+ error = np.nanstd(dist_similarity)
60
+
61
+ score = Score(center)
62
+ score.attrs['error'] = error
63
+ score.attrs[Score.RAW_VALUES_KEY] = dist_similarity
64
+
65
+ self.data_hist = data_hist
66
+ self.model_hist = model_hist
67
+ self.bins = bins
68
+
69
+ return score
70
+
71
+ def get_dists(self):
72
+ return self.data_hist, self.model_hist, self.bins
73
+
74
+
75
+ class NeuronalPropertyCeiling:
76
+ def __init__(self, similarity_metric: Metric):
77
+ self.similarity_metric = similarity_metric
78
+
79
+ def __call__(self, assembly: PropertyAssembly) -> Score:
80
+ self.assembly = assembly
81
+ return self._ceiling(self.similarity_metric.property_name)
82
+
83
+ def _ceiling(self, identifier):
84
+ return self.similarity_metric(self.assembly, self.assembly)
@@ -0,0 +1,10 @@
1
+ from pytest import approx
2
+
3
+ from brainscore_vision import load_metric, load_dataset
4
+
5
+
6
+ def test_identity_circularvariance():
7
+ assembly = load_dataset('Ringach2002')
8
+ metric = load_metric('ks_similarity', property_name='circular_variance')
9
+ score = metric(assembly, assembly)
10
+ assert score == approx(1, abs=0.05)
@@ -0,0 +1,13 @@
1
+ from brainscore_vision import metric_registry
2
+ from .metric import ErrorConsistency
3
+
4
+ metric_registry['error_consistency'] = ErrorConsistency
5
+
6
+ BIBTEX = """@article{geirhos2020beyond,
7
+ title={Beyond accuracy: quantifying trial-by-trial behaviour of CNNs and humans by measuring error consistency},
8
+ author={Geirhos, Robert and Meding, Kristof and Wichmann, Felix A},
9
+ journal={Advances in Neural Information Processing Systems},
10
+ volume={33},
11
+ pages={13890--13902},
12
+ year={2020}
13
+ }"""