brainscore-vision 2.1__py3-none-any.whl

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  1. brainscore_vision/__init__.py +105 -0
  2. brainscore_vision/__main__.py +20 -0
  3. brainscore_vision/benchmark_helpers/__init__.py +67 -0
  4. brainscore_vision/benchmark_helpers/neural_common.py +70 -0
  5. brainscore_vision/benchmark_helpers/properties_common.py +424 -0
  6. brainscore_vision/benchmark_helpers/screen.py +126 -0
  7. brainscore_vision/benchmark_helpers/test_helper.py +160 -0
  8. brainscore_vision/benchmarks/README.md +7 -0
  9. brainscore_vision/benchmarks/__init__.py +122 -0
  10. brainscore_vision/benchmarks/baker2022/__init__.py +9 -0
  11. brainscore_vision/benchmarks/baker2022/benchmark.py +125 -0
  12. brainscore_vision/benchmarks/baker2022/requirements.txt +1 -0
  13. brainscore_vision/benchmarks/baker2022/test.py +90 -0
  14. brainscore_vision/benchmarks/bmd2024/__init__.py +8 -0
  15. brainscore_vision/benchmarks/bmd2024/benchmark.py +51 -0
  16. brainscore_vision/benchmarks/bmd2024/test.py +29 -0
  17. brainscore_vision/benchmarks/bracci2019/__init__.py +8 -0
  18. brainscore_vision/benchmarks/bracci2019/benchmark.py +286 -0
  19. brainscore_vision/benchmarks/bracci2019/requirements.txt +3 -0
  20. brainscore_vision/benchmarks/cadena2017/__init__.py +5 -0
  21. brainscore_vision/benchmarks/cadena2017/benchmark.py +91 -0
  22. brainscore_vision/benchmarks/cadena2017/test.py +35 -0
  23. brainscore_vision/benchmarks/coggan2024_behavior/__init__.py +8 -0
  24. brainscore_vision/benchmarks/coggan2024_behavior/benchmark.py +133 -0
  25. brainscore_vision/benchmarks/coggan2024_behavior/test.py +21 -0
  26. brainscore_vision/benchmarks/coggan2024_fMRI/__init__.py +15 -0
  27. brainscore_vision/benchmarks/coggan2024_fMRI/benchmark.py +201 -0
  28. brainscore_vision/benchmarks/coggan2024_fMRI/test.py +25 -0
  29. brainscore_vision/benchmarks/ferguson2024/__init__.py +24 -0
  30. brainscore_vision/benchmarks/ferguson2024/benchmark.py +210 -0
  31. brainscore_vision/benchmarks/ferguson2024/helpers/helpers.py +251 -0
  32. brainscore_vision/benchmarks/ferguson2024/requirements.txt +5 -0
  33. brainscore_vision/benchmarks/ferguson2024/test.py +114 -0
  34. brainscore_vision/benchmarks/freemanziemba2013/__init__.py +10 -0
  35. brainscore_vision/benchmarks/freemanziemba2013/benchmarks/benchmark.py +53 -0
  36. brainscore_vision/benchmarks/freemanziemba2013/benchmarks/public_benchmarks.py +37 -0
  37. brainscore_vision/benchmarks/freemanziemba2013/test.py +98 -0
  38. brainscore_vision/benchmarks/geirhos2021/__init__.py +59 -0
  39. brainscore_vision/benchmarks/geirhos2021/benchmark.py +132 -0
  40. brainscore_vision/benchmarks/geirhos2021/test.py +189 -0
  41. brainscore_vision/benchmarks/hebart2023/__init__.py +4 -0
  42. brainscore_vision/benchmarks/hebart2023/benchmark.py +72 -0
  43. brainscore_vision/benchmarks/hebart2023/test.py +19 -0
  44. brainscore_vision/benchmarks/hermann2020/__init__.py +6 -0
  45. brainscore_vision/benchmarks/hermann2020/benchmark.py +63 -0
  46. brainscore_vision/benchmarks/hermann2020/test.py +28 -0
  47. brainscore_vision/benchmarks/igustibagus2024/__init__.py +11 -0
  48. brainscore_vision/benchmarks/igustibagus2024/domain_transfer_analysis.py +306 -0
  49. brainscore_vision/benchmarks/igustibagus2024/domain_transfer_neural.py +134 -0
  50. brainscore_vision/benchmarks/igustibagus2024/test.py +45 -0
  51. brainscore_vision/benchmarks/imagenet/__init__.py +4 -0
  52. brainscore_vision/benchmarks/imagenet/benchmark.py +50 -0
  53. brainscore_vision/benchmarks/imagenet/imagenet2012.csv +50001 -0
  54. brainscore_vision/benchmarks/imagenet/test.py +32 -0
  55. brainscore_vision/benchmarks/imagenet_c/__init__.py +7 -0
  56. brainscore_vision/benchmarks/imagenet_c/benchmark.py +204 -0
  57. brainscore_vision/benchmarks/imagenet_c/test.py +57 -0
  58. brainscore_vision/benchmarks/islam2021/__init__.py +11 -0
  59. brainscore_vision/benchmarks/islam2021/benchmark.py +107 -0
  60. brainscore_vision/benchmarks/islam2021/test.py +47 -0
  61. brainscore_vision/benchmarks/kar2019/__init__.py +4 -0
  62. brainscore_vision/benchmarks/kar2019/benchmark.py +88 -0
  63. brainscore_vision/benchmarks/kar2019/test.py +93 -0
  64. brainscore_vision/benchmarks/majajhong2015/__init__.py +18 -0
  65. brainscore_vision/benchmarks/majajhong2015/benchmark.py +96 -0
  66. brainscore_vision/benchmarks/majajhong2015/test.py +103 -0
  67. brainscore_vision/benchmarks/malania2007/__init__.py +13 -0
  68. brainscore_vision/benchmarks/malania2007/benchmark.py +235 -0
  69. brainscore_vision/benchmarks/malania2007/test.py +64 -0
  70. brainscore_vision/benchmarks/maniquet2024/__init__.py +6 -0
  71. brainscore_vision/benchmarks/maniquet2024/benchmark.py +199 -0
  72. brainscore_vision/benchmarks/maniquet2024/test.py +17 -0
  73. brainscore_vision/benchmarks/marques2020/__init__.py +76 -0
  74. brainscore_vision/benchmarks/marques2020/benchmarks/cavanaugh2002a_benchmark.py +119 -0
  75. brainscore_vision/benchmarks/marques2020/benchmarks/devalois1982a_benchmark.py +84 -0
  76. brainscore_vision/benchmarks/marques2020/benchmarks/devalois1982b_benchmark.py +88 -0
  77. brainscore_vision/benchmarks/marques2020/benchmarks/freemanZiemba2013_benchmark.py +138 -0
  78. brainscore_vision/benchmarks/marques2020/benchmarks/ringach2002_benchmark.py +167 -0
  79. brainscore_vision/benchmarks/marques2020/benchmarks/schiller1976_benchmark.py +100 -0
  80. brainscore_vision/benchmarks/marques2020/test.py +135 -0
  81. brainscore_vision/benchmarks/objectnet/__init__.py +4 -0
  82. brainscore_vision/benchmarks/objectnet/benchmark.py +52 -0
  83. brainscore_vision/benchmarks/objectnet/test.py +33 -0
  84. brainscore_vision/benchmarks/rajalingham2018/__init__.py +10 -0
  85. brainscore_vision/benchmarks/rajalingham2018/benchmarks/benchmark.py +74 -0
  86. brainscore_vision/benchmarks/rajalingham2018/benchmarks/public_benchmark.py +10 -0
  87. brainscore_vision/benchmarks/rajalingham2018/test.py +125 -0
  88. brainscore_vision/benchmarks/rajalingham2018/test_resources/alexnet-probabilities.nc +0 -0
  89. brainscore_vision/benchmarks/rajalingham2018/test_resources/identifier=alexnet,stimuli_identifier=objectome-240.nc +0 -0
  90. brainscore_vision/benchmarks/rajalingham2018/test_resources/identifier=resnet18,stimuli_identifier=objectome-240.nc +0 -0
  91. brainscore_vision/benchmarks/rajalingham2018/test_resources/identifier=resnet34,stimuli_identifier=objectome-240.nc +0 -0
  92. brainscore_vision/benchmarks/rajalingham2018/test_resources/resnet18-probabilities.nc +0 -0
  93. brainscore_vision/benchmarks/rajalingham2018/test_resources/resnet34-probabilities.nc +0 -0
  94. brainscore_vision/benchmarks/rajalingham2020/__init__.py +4 -0
  95. brainscore_vision/benchmarks/rajalingham2020/benchmark.py +52 -0
  96. brainscore_vision/benchmarks/rajalingham2020/test.py +39 -0
  97. brainscore_vision/benchmarks/sanghavi2020/__init__.py +17 -0
  98. brainscore_vision/benchmarks/sanghavi2020/benchmarks/sanghavi2020_benchmark.py +44 -0
  99. brainscore_vision/benchmarks/sanghavi2020/benchmarks/sanghavijozwik2020_benchmark.py +44 -0
  100. brainscore_vision/benchmarks/sanghavi2020/benchmarks/sanghavimurty2020_benchmark.py +44 -0
  101. brainscore_vision/benchmarks/sanghavi2020/test.py +83 -0
  102. brainscore_vision/benchmarks/scialom2024/__init__.py +52 -0
  103. brainscore_vision/benchmarks/scialom2024/benchmark.py +97 -0
  104. brainscore_vision/benchmarks/scialom2024/test.py +162 -0
  105. brainscore_vision/data/__init__.py +0 -0
  106. brainscore_vision/data/baker2022/__init__.py +40 -0
  107. brainscore_vision/data/baker2022/data_packaging/inverted_distortion_data_assembly.py +43 -0
  108. brainscore_vision/data/baker2022/data_packaging/inverted_distortion_stimulus_set.py +81 -0
  109. brainscore_vision/data/baker2022/data_packaging/mapping.py +60 -0
  110. brainscore_vision/data/baker2022/data_packaging/normal_distortion_data_assembly.py +46 -0
  111. brainscore_vision/data/baker2022/data_packaging/normal_distortion_stimulus_set.py +94 -0
  112. brainscore_vision/data/baker2022/test.py +135 -0
  113. brainscore_vision/data/barbumayo2019/BarbuMayo2019.py +26 -0
  114. brainscore_vision/data/barbumayo2019/__init__.py +23 -0
  115. brainscore_vision/data/barbumayo2019/test.py +10 -0
  116. brainscore_vision/data/bashivankar2019/__init__.py +52 -0
  117. brainscore_vision/data/bashivankar2019/data_packaging/2020-08-17_npc_v4_data.h5.png +0 -0
  118. brainscore_vision/data/bashivankar2019/data_packaging/requirements.txt +4 -0
  119. brainscore_vision/data/bashivankar2019/data_packaging/synthetic.py +162 -0
  120. brainscore_vision/data/bashivankar2019/test.py +15 -0
  121. brainscore_vision/data/bmd2024/__init__.py +69 -0
  122. brainscore_vision/data/bmd2024/data_packaging/BMD_2024_data_assembly.py +91 -0
  123. brainscore_vision/data/bmd2024/data_packaging/BMD_2024_simulus_set.py +48 -0
  124. brainscore_vision/data/bmd2024/data_packaging/stim_meta.csv +401 -0
  125. brainscore_vision/data/bmd2024/test.py +130 -0
  126. brainscore_vision/data/bracci2019/__init__.py +36 -0
  127. brainscore_vision/data/bracci2019/data_packaging.py +221 -0
  128. brainscore_vision/data/bracci2019/test.py +16 -0
  129. brainscore_vision/data/cadena2017/__init__.py +52 -0
  130. brainscore_vision/data/cadena2017/data_packaging/2018-08-07_tolias_v1.ipynb +25880 -0
  131. brainscore_vision/data/cadena2017/data_packaging/analysis.py +26 -0
  132. brainscore_vision/data/cadena2017/test.py +24 -0
  133. brainscore_vision/data/cichy2019/__init__.py +38 -0
  134. brainscore_vision/data/cichy2019/test.py +8 -0
  135. brainscore_vision/data/coggan2024_behavior/__init__.py +36 -0
  136. brainscore_vision/data/coggan2024_behavior/data_packaging.py +166 -0
  137. brainscore_vision/data/coggan2024_behavior/test.py +32 -0
  138. brainscore_vision/data/coggan2024_fMRI/__init__.py +27 -0
  139. brainscore_vision/data/coggan2024_fMRI/data_packaging.py +123 -0
  140. brainscore_vision/data/coggan2024_fMRI/test.py +25 -0
  141. brainscore_vision/data/david2004/__init__.py +34 -0
  142. brainscore_vision/data/david2004/data_packaging/2018-05-10_gallant_data.ipynb +3647 -0
  143. brainscore_vision/data/david2004/data_packaging/2018-05-23_gallant_data.ipynb +3149 -0
  144. brainscore_vision/data/david2004/data_packaging/2018-06-05_gallant_data.ipynb +3628 -0
  145. brainscore_vision/data/david2004/data_packaging/__init__.py +61 -0
  146. brainscore_vision/data/david2004/data_packaging/convertGallant.m +100 -0
  147. brainscore_vision/data/david2004/data_packaging/convertGallantV1Aligned.m +58 -0
  148. brainscore_vision/data/david2004/data_packaging/lib/DataHash_20160618/DataHash.m +484 -0
  149. brainscore_vision/data/david2004/data_packaging/lib/DataHash_20160618/license.txt +24 -0
  150. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/GetMD5.c +895 -0
  151. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/GetMD5.m +107 -0
  152. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/GetMD5.mexw64 +0 -0
  153. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/GetMD5_helper.m +91 -0
  154. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/InstallMex.m +307 -0
  155. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/license.txt +24 -0
  156. brainscore_vision/data/david2004/data_packaging/lib/GetMD5/uTest_GetMD5.m +290 -0
  157. brainscore_vision/data/david2004/data_packaging/lib/glob/glob.m +472 -0
  158. brainscore_vision/data/david2004/data_packaging/lib/glob/license.txt +27 -0
  159. brainscore_vision/data/david2004/data_packaging/xr_align_debug.py +137 -0
  160. brainscore_vision/data/david2004/test.py +8 -0
  161. brainscore_vision/data/deng2009/__init__.py +22 -0
  162. brainscore_vision/data/deng2009/deng2009imagenet.py +33 -0
  163. brainscore_vision/data/deng2009/test.py +9 -0
  164. brainscore_vision/data/ferguson2024/__init__.py +401 -0
  165. brainscore_vision/data/ferguson2024/data_packaging/data_packaging.py +164 -0
  166. brainscore_vision/data/ferguson2024/data_packaging/fitting_stimuli.py +20 -0
  167. brainscore_vision/data/ferguson2024/requirements.txt +2 -0
  168. brainscore_vision/data/ferguson2024/test.py +155 -0
  169. brainscore_vision/data/freemanziemba2013/__init__.py +133 -0
  170. brainscore_vision/data/freemanziemba2013/data_packaging/2018-10-05_movshon.ipynb +2002 -0
  171. brainscore_vision/data/freemanziemba2013/data_packaging/2020-02-21_movshon_aperture.ipynb +4730 -0
  172. brainscore_vision/data/freemanziemba2013/data_packaging/2020-02-26_movshon_aperture_test.ipynb +2228 -0
  173. brainscore_vision/data/freemanziemba2013/data_packaging/aperture_correct.py +160 -0
  174. brainscore_vision/data/freemanziemba2013/data_packaging/data_packaging.py +57 -0
  175. brainscore_vision/data/freemanziemba2013/data_packaging/movshon.py +202 -0
  176. brainscore_vision/data/freemanziemba2013/test.py +97 -0
  177. brainscore_vision/data/geirhos2021/__init__.py +358 -0
  178. brainscore_vision/data/geirhos2021/creating_geirhos_ids.ipynb +468 -0
  179. brainscore_vision/data/geirhos2021/data_packaging/colour/colour_data_assembly.py +87 -0
  180. brainscore_vision/data/geirhos2021/data_packaging/colour/colour_stimulus_set.py +81 -0
  181. brainscore_vision/data/geirhos2021/data_packaging/contrast/contrast_data_assembly.py +83 -0
  182. brainscore_vision/data/geirhos2021/data_packaging/contrast/contrast_stimulus_set.py +82 -0
  183. brainscore_vision/data/geirhos2021/data_packaging/cue-conflict/cue-conflict_data_assembly.py +100 -0
  184. brainscore_vision/data/geirhos2021/data_packaging/cue-conflict/cue-conflict_stimulus_set.py +84 -0
  185. brainscore_vision/data/geirhos2021/data_packaging/edge/edge_data_assembly.py +96 -0
  186. brainscore_vision/data/geirhos2021/data_packaging/edge/edge_stimulus_set.py +69 -0
  187. brainscore_vision/data/geirhos2021/data_packaging/eidolonI/eidolonI_data_assembly.py +92 -0
  188. brainscore_vision/data/geirhos2021/data_packaging/eidolonI/eidolonI_stimulus_set.py +82 -0
  189. brainscore_vision/data/geirhos2021/data_packaging/eidolonII/eidolonII_data_assembly.py +92 -0
  190. brainscore_vision/data/geirhos2021/data_packaging/eidolonII/eidolonII_stimulus_set.py +82 -0
  191. brainscore_vision/data/geirhos2021/data_packaging/eidolonIII/eidolonIII_data_assembly.py +92 -0
  192. brainscore_vision/data/geirhos2021/data_packaging/eidolonIII/eidolonIII_stimulus_set.py +82 -0
  193. brainscore_vision/data/geirhos2021/data_packaging/false-colour/false-colour_data_assembly.py +83 -0
  194. brainscore_vision/data/geirhos2021/data_packaging/false-colour/false-colour_stimulus_set.py +87 -0
  195. brainscore_vision/data/geirhos2021/data_packaging/high-pass/high-pass_data_assembly.py +84 -0
  196. brainscore_vision/data/geirhos2021/data_packaging/high-pass/high-pass_stimulus_set.py +82 -0
  197. brainscore_vision/data/geirhos2021/data_packaging/low-pass/low-pass_data_assembly.py +84 -0
  198. brainscore_vision/data/geirhos2021/data_packaging/low-pass/low-pass_stimulus_set.py +81 -0
  199. brainscore_vision/data/geirhos2021/data_packaging/phase-scrambling/phase-scrambling_data_assembly.py +84 -0
  200. brainscore_vision/data/geirhos2021/data_packaging/phase-scrambling/phase-scrambling_stimulus_set.py +82 -0
  201. brainscore_vision/data/geirhos2021/data_packaging/power-equalisation/power-equalisation_data_assembly.py +88 -0
  202. brainscore_vision/data/geirhos2021/data_packaging/power-equalisation/power-equalisation_stimulus_set.py +82 -0
  203. brainscore_vision/data/geirhos2021/data_packaging/rotation/rotation_data_assembly.py +87 -0
  204. brainscore_vision/data/geirhos2021/data_packaging/rotation/rotation_stimulus_set.py +82 -0
  205. brainscore_vision/data/geirhos2021/data_packaging/silhouette/silhouette_data_assembly.py +100 -0
  206. brainscore_vision/data/geirhos2021/data_packaging/silhouette/silhouette_stimulus_set.py +71 -0
  207. brainscore_vision/data/geirhos2021/data_packaging/sketch/sketch_data_assembly.py +88 -0
  208. brainscore_vision/data/geirhos2021/data_packaging/sketch/sketch_stimulus_set.py +75 -0
  209. brainscore_vision/data/geirhos2021/data_packaging/stylized/stylized_data_assembly.py +87 -0
  210. brainscore_vision/data/geirhos2021/data_packaging/stylized/stylized_stimulus_set.py +75 -0
  211. brainscore_vision/data/geirhos2021/data_packaging/uniform-noise/uniform-noise_data_assembly.py +86 -0
  212. brainscore_vision/data/geirhos2021/data_packaging/uniform-noise/uniform-noise_stimulus_set.py +82 -0
  213. brainscore_vision/data/geirhos2021/geirhos_hashes.csv +52 -0
  214. brainscore_vision/data/geirhos2021/test.py +330 -0
  215. brainscore_vision/data/hebart2023/__init__.py +23 -0
  216. brainscore_vision/data/hebart2023/packaging/data_assembly.py +40 -0
  217. brainscore_vision/data/hebart2023/packaging/stimulus_set.py +72 -0
  218. brainscore_vision/data/hebart2023/test.py +42 -0
  219. brainscore_vision/data/hendrycks2019/__init__.py +45 -0
  220. brainscore_vision/data/hendrycks2019/test.py +26 -0
  221. brainscore_vision/data/igustibagus2024/__init__.py +23 -0
  222. brainscore_vision/data/igustibagus2024/dependencies/data_pico/stimulus_dicarlo_domain_transfer.csv +3139 -0
  223. brainscore_vision/data/igustibagus2024/investigation_consistency.ipynb +346 -0
  224. brainscore_vision/data/igustibagus2024/merged_assembly/__init__.py +0 -0
  225. brainscore_vision/data/igustibagus2024/merged_assembly/create_merged_assembly.ipynb +649 -0
  226. brainscore_vision/data/igustibagus2024/merged_assembly/create_merged_assembly_and_stim.py +152 -0
  227. brainscore_vision/data/igustibagus2024/merged_assembly/create_stimulus_set_with_background-id.py +45 -0
  228. brainscore_vision/data/igustibagus2024/merged_assembly/helpers_background_id.py +849 -0
  229. brainscore_vision/data/igustibagus2024/merged_assembly/merged_stimulus_set.csv +3139 -0
  230. brainscore_vision/data/igustibagus2024/oleo_pico_exploration.ipynb +410 -0
  231. brainscore_vision/data/igustibagus2024/test.py +26 -0
  232. brainscore_vision/data/imagenetslim15000/ImageNetSlim15000.py +30 -0
  233. brainscore_vision/data/imagenetslim15000/__init__.py +11 -0
  234. brainscore_vision/data/imagenetslim15000/test.py +8 -0
  235. brainscore_vision/data/islam2021/__init__.py +18 -0
  236. brainscore_vision/data/islam2021/data_packaging.py +64 -0
  237. brainscore_vision/data/islam2021/test.py +11 -0
  238. brainscore_vision/data/kar2018/__init__.py +58 -0
  239. brainscore_vision/data/kar2018/data_packaging/kar_coco.py +97 -0
  240. brainscore_vision/data/kar2018/data_packaging/kar_hvm.py +77 -0
  241. brainscore_vision/data/kar2018/data_packaging/requirements.txt +1 -0
  242. brainscore_vision/data/kar2018/test.py +10 -0
  243. brainscore_vision/data/kar2019/__init__.py +43 -0
  244. brainscore_vision/data/kar2019/data_packaging.py +116 -0
  245. brainscore_vision/data/kar2019/test.py +8 -0
  246. brainscore_vision/data/kuzovkin2018/__init__.py +36 -0
  247. brainscore_vision/data/kuzovkin2018/createAssembliesBrainScore.py +103 -0
  248. brainscore_vision/data/kuzovkin2018/test.py +8 -0
  249. brainscore_vision/data/majajhong2015/__init__.py +113 -0
  250. brainscore_vision/data/majajhong2015/data_packaging/darren10ms.py +32 -0
  251. brainscore_vision/data/majajhong2015/data_packaging/data_packaging.py +65 -0
  252. brainscore_vision/data/majajhong2015/test.py +38 -0
  253. brainscore_vision/data/malania2007/__init__.py +254 -0
  254. brainscore_vision/data/malania2007/data_packaging/malania_data_assembly.py +79 -0
  255. brainscore_vision/data/malania2007/data_packaging/malania_stimulus_set.py +79 -0
  256. brainscore_vision/data/malania2007/test.py +147 -0
  257. brainscore_vision/data/maniquet2024/__init__.py +57 -0
  258. brainscore_vision/data/maniquet2024/data_packaging.py +151 -0
  259. brainscore_vision/data/maniquet2024/test.py +16 -0
  260. brainscore_vision/data/marques2020/__init__.py +123 -0
  261. brainscore_vision/data/marques2020/data_packaging/marques_cavanaugh2002a.py +84 -0
  262. brainscore_vision/data/marques2020/data_packaging/marques_devalois1982a.py +44 -0
  263. brainscore_vision/data/marques2020/data_packaging/marques_devalois1982b.py +54 -0
  264. brainscore_vision/data/marques2020/data_packaging/marques_freemanZiemba2013.py +252 -0
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  813. brainscore_vision/models/resnet18_imagenet21kP/setup.py +18 -0
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  815. brainscore_vision/models/resnet50_eMMCR_Vanilla/__init__.py +5 -0
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  819. brainscore_vision/models/resnet50_eMMCR_VanillaV2/__init__.py +9 -0
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  823. brainscore_vision/models/resnet50_eMMCR_eqp10_lm1/__init__.py +9 -0
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  827. brainscore_vision/models/resnet50_julios/__init__.py +5 -0
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  833. brainscore_vision/models/resnet50_tutorial/requirements.txt +2 -0
  834. brainscore_vision/models/resnet50_tutorial/test.py +8 -0
  835. brainscore_vision/models/resnet_152_v2_pytorch/__init__.py +7 -0
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  837. brainscore_vision/models/resnet_152_v2_pytorch/requirements.txt +2 -0
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  839. brainscore_vision/models/resnet_50_robust/__init__.py +7 -0
  840. brainscore_vision/models/resnet_50_robust/model.py +55 -0
  841. brainscore_vision/models/resnet_50_robust/requirements.txt +3 -0
  842. brainscore_vision/models/resnet_50_robust/test.py +8 -0
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  847. brainscore_vision/models/resnext101_32x32d_wsl/__init__.py +7 -0
  848. brainscore_vision/models/resnext101_32x32d_wsl/model.py +40 -0
  849. brainscore_vision/models/resnext101_32x32d_wsl/requirements.txt +2 -0
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  851. brainscore_vision/models/resnext101_32x48d_wsl/__init__.py +7 -0
  852. brainscore_vision/models/resnext101_32x48d_wsl/model.py +38 -0
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  857. brainscore_vision/models/resnext101_32x8d_wsl/requirements.txt +2 -0
  858. brainscore_vision/models/resnext101_32x8d_wsl/test.py +8 -0
  859. brainscore_vision/models/temporal_model_AVID_CMA/__init__.py +17 -0
  860. brainscore_vision/models/temporal_model_AVID_CMA/model.py +92 -0
  861. brainscore_vision/models/temporal_model_AVID_CMA/requirements.txt +3 -0
  862. brainscore_vision/models/temporal_model_AVID_CMA/test.py +18 -0
  863. brainscore_vision/models/temporal_model_GDT/__init__.py +16 -0
  864. brainscore_vision/models/temporal_model_GDT/model.py +72 -0
  865. brainscore_vision/models/temporal_model_GDT/requirements.txt +3 -0
  866. brainscore_vision/models/temporal_model_GDT/test.py +17 -0
  867. brainscore_vision/models/temporal_model_S3D_text_video/__init__.py +14 -0
  868. brainscore_vision/models/temporal_model_S3D_text_video/model.py +65 -0
  869. brainscore_vision/models/temporal_model_S3D_text_video/requirements.txt +1 -0
  870. brainscore_vision/models/temporal_model_S3D_text_video/test.py +15 -0
  871. brainscore_vision/models/temporal_model_SeLaVi/__init__.py +17 -0
  872. brainscore_vision/models/temporal_model_SeLaVi/model.py +68 -0
  873. brainscore_vision/models/temporal_model_SeLaVi/requirements.txt +3 -0
  874. brainscore_vision/models/temporal_model_SeLaVi/test.py +18 -0
  875. brainscore_vision/models/temporal_model_VideoMAE/__init__.py +15 -0
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  878. brainscore_vision/models/temporal_model_VideoMAE/test.py +16 -0
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  880. brainscore_vision/models/temporal_model_VideoMAEv2/model.py +109 -0
  881. brainscore_vision/models/temporal_model_VideoMAEv2/requirements.txt +4 -0
  882. brainscore_vision/models/temporal_model_VideoMAEv2/test.py +16 -0
  883. brainscore_vision/models/temporal_model_mae_st/__init__.py +15 -0
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  885. brainscore_vision/models/temporal_model_mae_st/requirements.txt +3 -0
  886. brainscore_vision/models/temporal_model_mae_st/test.py +16 -0
  887. brainscore_vision/models/temporal_model_mmaction2/__init__.py +23 -0
  888. brainscore_vision/models/temporal_model_mmaction2/mmaction2.csv +24 -0
  889. brainscore_vision/models/temporal_model_mmaction2/model.py +226 -0
  890. brainscore_vision/models/temporal_model_mmaction2/requirements.txt +5 -0
  891. brainscore_vision/models/temporal_model_mmaction2/test.py +24 -0
  892. brainscore_vision/models/temporal_model_openstl/__init__.py +18 -0
  893. brainscore_vision/models/temporal_model_openstl/model.py +206 -0
  894. brainscore_vision/models/temporal_model_openstl/requirements.txt +3 -0
  895. brainscore_vision/models/temporal_model_openstl/test.py +19 -0
  896. brainscore_vision/models/temporal_model_torchvision/__init__.py +19 -0
  897. brainscore_vision/models/temporal_model_torchvision/model.py +92 -0
  898. brainscore_vision/models/temporal_model_torchvision/requirements.txt +2 -0
  899. brainscore_vision/models/temporal_model_torchvision/test.py +20 -0
  900. brainscore_vision/models/tv_efficientnet_b1/__init__.py +5 -0
  901. brainscore_vision/models/tv_efficientnet_b1/model.py +54 -0
  902. brainscore_vision/models/tv_efficientnet_b1/setup.py +24 -0
  903. brainscore_vision/models/tv_efficientnet_b1/test.py +1 -0
  904. brainscore_vision/models/voneresnet_50_non_stochastic/__init__.py +7 -0
  905. brainscore_vision/models/voneresnet_50_non_stochastic/model.py +104 -0
  906. brainscore_vision/models/voneresnet_50_non_stochastic/requirements.txt +8 -0
  907. brainscore_vision/models/voneresnet_50_non_stochastic/test.py +8 -0
  908. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/LICENSE +674 -0
  909. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/README.md +105 -0
  910. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/run.py +136 -0
  911. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/setup.py +41 -0
  912. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/train.py +383 -0
  913. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/vonenet/__init__.py +71 -0
  914. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/vonenet/back_ends.py +337 -0
  915. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/vonenet/modules.py +126 -0
  916. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/vonenet/params.py +100 -0
  917. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/vonenet/utils.py +32 -0
  918. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/vonenet/vonenet.py +68 -0
  919. brainscore_vision/models/voneresnet_50_non_stochastic/vonenet/vonenet_tutorial-activations.ipynb +352 -0
  920. brainscore_vision/models/yudixie_resnet18_240719_0/__init__.py +11 -0
  921. brainscore_vision/models/yudixie_resnet18_240719_0/model.py +60 -0
  922. brainscore_vision/models/yudixie_resnet18_240719_0/setup.py +25 -0
  923. brainscore_vision/models/yudixie_resnet18_240719_0/test.py +1 -0
  924. brainscore_vision/models/yudixie_resnet18_240719_1/__init__.py +11 -0
  925. brainscore_vision/models/yudixie_resnet18_240719_1/model.py +60 -0
  926. brainscore_vision/models/yudixie_resnet18_240719_1/setup.py +25 -0
  927. brainscore_vision/models/yudixie_resnet18_240719_1/test.py +1 -0
  928. brainscore_vision/models/yudixie_resnet18_240719_10/__init__.py +11 -0
  929. brainscore_vision/models/yudixie_resnet18_240719_10/model.py +60 -0
  930. brainscore_vision/models/yudixie_resnet18_240719_10/setup.py +25 -0
  931. brainscore_vision/models/yudixie_resnet18_240719_10/test.py +1 -0
  932. brainscore_vision/models/yudixie_resnet18_240719_2/__init__.py +11 -0
  933. brainscore_vision/models/yudixie_resnet18_240719_2/model.py +60 -0
  934. brainscore_vision/models/yudixie_resnet18_240719_2/setup.py +25 -0
  935. brainscore_vision/models/yudixie_resnet18_240719_2/test.py +1 -0
  936. brainscore_vision/models/yudixie_resnet50_imagenet1kpret_0_240222/__init__.py +7 -0
  937. brainscore_vision/models/yudixie_resnet50_imagenet1kpret_0_240222/model.py +66 -0
  938. brainscore_vision/models/yudixie_resnet50_imagenet1kpret_0_240222/setup.py +24 -0
  939. brainscore_vision/models/yudixie_resnet50_imagenet1kpret_0_240222/test.py +1 -0
  940. brainscore_vision/models/yudixie_resnet50_imagenet1kpret_0_240312/__init__.py +7 -0
  941. brainscore_vision/models/yudixie_resnet50_imagenet1kpret_0_240312/model.py +68 -0
  942. brainscore_vision/models/yudixie_resnet50_imagenet1kpret_0_240312/setup.py +24 -0
  943. brainscore_vision/models/yudixie_resnet50_imagenet1kpret_0_240312/test.py +1 -0
  944. brainscore_vision/submission/__init__.py +0 -0
  945. brainscore_vision/submission/actions_helpers.py +153 -0
  946. brainscore_vision/submission/config.py +7 -0
  947. brainscore_vision/submission/endpoints.py +58 -0
  948. brainscore_vision/utils/__init__.py +91 -0
  949. brainscore_vision-2.1.dist-info/LICENSE +11 -0
  950. brainscore_vision-2.1.dist-info/METADATA +152 -0
  951. brainscore_vision-2.1.dist-info/RECORD +1009 -0
  952. brainscore_vision-2.1.dist-info/WHEEL +5 -0
  953. brainscore_vision-2.1.dist-info/top_level.txt +4 -0
  954. docs/Makefile +20 -0
  955. docs/source/conf.py +78 -0
  956. docs/source/index.rst +21 -0
  957. docs/source/modules/api_reference.rst +10 -0
  958. docs/source/modules/benchmarks.rst +8 -0
  959. docs/source/modules/brainscore_submission.png +0 -0
  960. docs/source/modules/developer_clarifications.rst +36 -0
  961. docs/source/modules/metrics.rst +8 -0
  962. docs/source/modules/model_interface.rst +8 -0
  963. docs/source/modules/submission.rst +112 -0
  964. docs/source/modules/tutorial_screenshots/brain-score_logo.png +0 -0
  965. docs/source/modules/tutorial_screenshots/final_submit.png +0 -0
  966. docs/source/modules/tutorial_screenshots/init_py.png +0 -0
  967. docs/source/modules/tutorial_screenshots/mms.png +0 -0
  968. docs/source/modules/tutorial_screenshots/setup.png +0 -0
  969. docs/source/modules/tutorial_screenshots/sms.png +0 -0
  970. docs/source/modules/tutorial_screenshots/subfolders.png +0 -0
  971. docs/source/modules/utils.rst +22 -0
  972. migrations/2020-12-20_pkl_to_nc.py +90 -0
  973. tests/__init__.py +6 -0
  974. tests/conftest.py +26 -0
  975. tests/test_benchmark_helpers/__init__.py +0 -0
  976. tests/test_benchmark_helpers/test_screen.py +75 -0
  977. tests/test_examples.py +41 -0
  978. tests/test_integration.py +43 -0
  979. tests/test_metric_helpers/__init__.py +0 -0
  980. tests/test_metric_helpers/test_temporal.py +80 -0
  981. tests/test_metric_helpers/test_transformations.py +171 -0
  982. tests/test_metric_helpers/test_xarray_utils.py +85 -0
  983. tests/test_model_helpers/__init__.py +6 -0
  984. tests/test_model_helpers/activations/__init__.py +0 -0
  985. tests/test_model_helpers/activations/test___init__.py +404 -0
  986. tests/test_model_helpers/brain_transformation/__init__.py +0 -0
  987. tests/test_model_helpers/brain_transformation/test___init__.py +18 -0
  988. tests/test_model_helpers/brain_transformation/test_behavior.py +181 -0
  989. tests/test_model_helpers/brain_transformation/test_neural.py +70 -0
  990. tests/test_model_helpers/brain_transformation/test_temporal.py +66 -0
  991. tests/test_model_helpers/temporal/__init__.py +0 -0
  992. tests/test_model_helpers/temporal/activations/__init__.py +0 -0
  993. tests/test_model_helpers/temporal/activations/test_extractor.py +96 -0
  994. tests/test_model_helpers/temporal/activations/test_inferencer.py +189 -0
  995. tests/test_model_helpers/temporal/activations/test_inputs.py +103 -0
  996. tests/test_model_helpers/temporal/brain_transformation/__init__.py +0 -0
  997. tests/test_model_helpers/temporal/brain_transformation/test_temporal_ops.py +122 -0
  998. tests/test_model_helpers/temporal/test_utils.py +61 -0
  999. tests/test_model_helpers/test_generic_plugin_tests.py +310 -0
  1000. tests/test_model_helpers/test_imports.py +10 -0
  1001. tests/test_model_helpers/test_s3.py +38 -0
  1002. tests/test_models.py +15 -0
  1003. tests/test_stimuli.py +0 -0
  1004. tests/test_submission/__init__.py +0 -0
  1005. tests/test_submission/mock_config.py +3 -0
  1006. tests/test_submission/test_actions_helpers.py +67 -0
  1007. tests/test_submission/test_db.py +54 -0
  1008. tests/test_submission/test_endpoints.py +125 -0
  1009. tests/test_utils.py +21 -0
brainscore_vision/data/david2004/data_packaging/2018-05-23_gallant_data.ipynb ADDED
@@ -0,0 +1,3149 @@
1
+ {
2
+ "cells": [
3
+ {
4
+ "cell_type": "code",
5
+ "execution_count": 1,
6
+ "metadata": {},
7
+ "outputs": [],
8
+ "source": [
9
+ "import os"
10
+ ]
11
+ },
12
+ {
13
+ "cell_type": "code",
14
+ "execution_count": 2,
15
+ "metadata": {},
16
+ "outputs": [],
17
+ "source": [
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+ "import re"
19
+ ]
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+ },
21
+ {
22
+ "cell_type": "code",
23
+ "execution_count": 3,
24
+ "metadata": {},
25
+ "outputs": [],
26
+ "source": [
27
+ "import zipfile"
28
+ ]
29
+ },
30
+ {
31
+ "cell_type": "code",
32
+ "execution_count": 4,
33
+ "metadata": {},
34
+ "outputs": [],
35
+ "source": [
36
+ "import glob"
37
+ ]
38
+ },
39
+ {
40
+ "cell_type": "code",
41
+ "execution_count": null,
42
+ "metadata": {},
43
+ "outputs": [],
44
+ "source": [
45
+ "import itertools"
46
+ ]
47
+ },
48
+ {
49
+ "cell_type": "code",
50
+ "execution_count": 5,
51
+ "metadata": {},
52
+ "outputs": [],
53
+ "source": [
54
+ "import numpy as np"
55
+ ]
56
+ },
57
+ {
58
+ "cell_type": "code",
59
+ "execution_count": 6,
60
+ "metadata": {},
61
+ "outputs": [],
62
+ "source": [
63
+ "import pandas as pd"
64
+ ]
65
+ },
66
+ {
67
+ "cell_type": "code",
68
+ "execution_count": 7,
69
+ "metadata": {},
70
+ "outputs": [],
71
+ "source": [
72
+ "import xarray as xr"
73
+ ]
74
+ },
75
+ {
76
+ "cell_type": "code",
77
+ "execution_count": 8,
78
+ "metadata": {},
79
+ "outputs": [],
80
+ "source": [
81
+ "import matplotlib.pyplot as plt"
82
+ ]
83
+ },
84
+ {
85
+ "cell_type": "code",
86
+ "execution_count": 9,
87
+ "metadata": {},
88
+ "outputs": [],
89
+ "source": [
90
+ "import mkgu"
91
+ ]
92
+ },
93
+ {
94
+ "cell_type": "code",
95
+ "execution_count": 10,
96
+ "metadata": {},
97
+ "outputs": [],
98
+ "source": [
99
+ "from mkgu.knownfile import KnownFile as kf"
100
+ ]
101
+ },
102
+ {
103
+ "cell_type": "code",
104
+ "execution_count": 11,
105
+ "metadata": {},
106
+ "outputs": [],
107
+ "source": [
108
+ "from mkgu.knownfile import FileRecord, Sighting"
109
+ ]
110
+ },
111
+ {
112
+ "cell_type": "code",
113
+ "execution_count": 12,
114
+ "metadata": {},
115
+ "outputs": [],
116
+ "source": [
117
+ "from mkgu.lookup import pwdb"
118
+ ]
119
+ },
120
+ {
121
+ "cell_type": "code",
122
+ "execution_count": 13,
123
+ "metadata": {},
124
+ "outputs": [],
125
+ "source": [
126
+ "from mkgu.assemblies import AssemblyModel, AssemblyStoreMap, AssemblyStoreModel"
127
+ ]
128
+ },
129
+ {
130
+ "cell_type": "code",
131
+ "execution_count": 14,
132
+ "metadata": {},
133
+ "outputs": [],
134
+ "source": [
135
+ "from mkgu.stimuli import ImageModel, AttributeModel, ImageMetaModel, StimulusSetModel, ImageStoreModel, \\\n",
136
+ " StimulusSetImageMap, ImageStoreMap"
137
+ ]
138
+ },
139
+ {
140
+ "cell_type": "markdown",
141
+ "metadata": {},
142
+ "source": [
143
+ "## Process .nc files"
144
+ ]
145
+ },
146
+ {
147
+ "cell_type": "code",
148
+ "execution_count": 15,
149
+ "metadata": {},
150
+ "outputs": [],
151
+ "source": [
152
+ "v2_base_path = \"/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1\""
153
+ ]
154
+ },
155
+ {
156
+ "cell_type": "code",
157
+ "execution_count": 16,
158
+ "metadata": {},
159
+ "outputs": [
160
+ {
161
+ "data": {
162
+ "text/plain": [
163
+ "['/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data1/DGrat/data.nc',\n",
164
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data10/NatRev/data.nc',\n",
165
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data11/NatRev/data.nc',\n",
166
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data12/NatRev/data.nc',\n",
167
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data13/NatRev/data.nc',\n",
168
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data14/NatRev/data.nc',\n",
169
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data15/NatRev/data.nc',\n",
170
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data16/NatRev/data.nc',\n",
171
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data17/NatRev/data.nc',\n",
172
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data18/NatRev/data.nc',\n",
173
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data19/NatRev/data.nc',\n",
174
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data2/DGrat/data.nc',\n",
175
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data20/NatRev/data.nc',\n",
176
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data3/DGrat/data.nc',\n",
177
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data4/DGrat/data.nc',\n",
178
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data5/DGrat/data.nc',\n",
179
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data6/DGrat/data.nc',\n",
180
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/Nat/data.nc',\n",
181
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/NatRev/data.nc',\n",
182
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data8/NatRev/data.nc',\n",
183
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data9/NatRev/data.nc']"
184
+ ]
185
+ },
186
+ "execution_count": 16,
187
+ "metadata": {},
188
+ "output_type": "execute_result"
189
+ }
190
+ ],
191
+ "source": [
192
+ "nc_files = glob.glob(os.path.join(v2_base_path, \"*/*/*.nc\"), recursive=True)\n",
193
+ "sorted(nc_files)"
194
+ ]
195
+ },
196
+ {
197
+ "cell_type": "code",
198
+ "execution_count": 17,
199
+ "metadata": {},
200
+ "outputs": [
201
+ {
202
+ "data": {
203
+ "text/plain": [
204
+ "{'/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data1/DGrat/data.nc': <xarray.DataArray (image_file_name: 96000, neuroid: 10)>\n",
205
+ " [960000 values with dtype=float64]\n",
206
+ " Coordinates:\n",
207
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data1/DGrat/stimuli//1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
208
+ " category_name (image_file_name) float64 ...\n",
209
+ " stimulusRepeats (image_file_name) int64 ...\n",
210
+ " * neuroid (neuroid) object 'e0022' 'e0026' 'e0031' 'e0033' ...\n",
211
+ " region (neuroid) object ...\n",
212
+ " animal (neuroid) object ...,\n",
213
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data10/NatRev/data.nc': <xarray.DataArray (image_file_name: 83600, neuroid: 10)>\n",
214
+ " [836000 values with dtype=float64]\n",
215
+ " Coordinates:\n",
216
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data10/NatRev/stimuli//0c816a8354b91506395116bd8145f96b.jpg' ...\n",
217
+ " category_name (image_file_name) float64 ...\n",
218
+ " stimulusRepeats (image_file_name) int64 ...\n",
219
+ " * neuroid (neuroid) object 'e0052' 'e0053' 'e0056' 'e0058' ...\n",
220
+ " region (neuroid) object ...\n",
221
+ " animal (neuroid) object ...,\n",
222
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data11/NatRev/data.nc': <xarray.DataArray (image_file_name: 206000, neuroid: 10)>\n",
223
+ " [2060000 values with dtype=float64]\n",
224
+ " Coordinates:\n",
225
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data11/NatRev/stimuli//b968f6d096d2f8e50c91877430918209.jpg' ...\n",
226
+ " category_name (image_file_name) float64 ...\n",
227
+ " stimulusRepeats (image_file_name) int64 ...\n",
228
+ " * neuroid (neuroid) object 'e0068' 'e0070' 'e0071' 'e0072' ...\n",
229
+ " region (neuroid) object ...\n",
230
+ " animal (neuroid) object ...,\n",
231
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data12/NatRev/data.nc': <xarray.DataArray (image_file_name: 92200, neuroid: 10)>\n",
232
+ " [922000 values with dtype=float64]\n",
233
+ " Coordinates:\n",
234
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data12/NatRev/stimuli//f8b630444bd0994d3572dc9c8f816fa2.jpg' ...\n",
235
+ " category_name (image_file_name) float64 ...\n",
236
+ " stimulusRepeats (image_file_name) int64 ...\n",
237
+ " * neuroid (neuroid) object 'e0082' 'e0083' 'e0086' 'e0087' ...\n",
238
+ " region (neuroid) object ...\n",
239
+ " animal (neuroid) object ...,\n",
240
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data13/NatRev/data.nc': <xarray.DataArray (image_file_name: 218200, neuroid: 10)>\n",
241
+ " [2182000 values with dtype=float64]\n",
242
+ " Coordinates:\n",
243
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data13/NatRev/stimuli//f8b630444bd0994d3572dc9c8f816fa2.jpg' ...\n",
244
+ " category_name (image_file_name) float64 ...\n",
245
+ " stimulusRepeats (image_file_name) int64 ...\n",
246
+ " * neuroid (neuroid) object 'e0100' 'e0101' 'e0102' 'e0103' ...\n",
247
+ " region (neuroid) object ...\n",
248
+ " animal (neuroid) object ...,\n",
249
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data14/NatRev/data.nc': <xarray.DataArray (image_file_name: 156600, neuroid: 10)>\n",
250
+ " [1566000 values with dtype=float64]\n",
251
+ " Coordinates:\n",
252
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data14/NatRev/stimuli//a19352ef8333a928074ec053907ee908.jpg' ...\n",
253
+ " category_name (image_file_name) float64 ...\n",
254
+ " stimulusRepeats (image_file_name) int64 ...\n",
255
+ " * neuroid (neuroid) object 'e0112' 'e0113' 'e0115' 'e0116' ...\n",
256
+ " region (neuroid) object ...\n",
257
+ " animal (neuroid) object ...,\n",
258
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data15/NatRev/data.nc': <xarray.DataArray (image_file_name: 169502, neuroid: 10)>\n",
259
+ " [1695020 values with dtype=float64]\n",
260
+ " Coordinates:\n",
261
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data15/NatRev/stimuli//48de0ccb6c97faf706a7ebe79daf72b9.jpg' ...\n",
262
+ " category_name (image_file_name) float64 ...\n",
263
+ " stimulusRepeats (image_file_name) int64 ...\n",
264
+ " * neuroid (neuroid) object 'e0125' 'e0128' 'e0129' 'e0131' ...\n",
265
+ " region (neuroid) object ...\n",
266
+ " animal (neuroid) object ...,\n",
267
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data16/NatRev/data.nc': <xarray.DataArray (image_file_name: 263401, neuroid: 10)>\n",
268
+ " [2634010 values with dtype=float64]\n",
269
+ " Coordinates:\n",
270
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data16/NatRev/stimuli//055c156dce8b5b6ffb7f8888b9f69b51.jpg' ...\n",
271
+ " category_name (image_file_name) float64 ...\n",
272
+ " stimulusRepeats (image_file_name) int64 ...\n",
273
+ " * neuroid (neuroid) object 'r0187A' 'r0228C' 'r0229B' 'r0230B' ...\n",
274
+ " region (neuroid) object ...\n",
275
+ " animal (neuroid) object ...,\n",
276
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data17/NatRev/data.nc': <xarray.DataArray (image_file_name: 328800, neuroid: 9)>\n",
277
+ " [2959200 values with dtype=float64]\n",
278
+ " Coordinates:\n",
279
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data17/NatRev/stimuli//a2a009e4d1611647420b2d3ba3c68ce4.jpg' ...\n",
280
+ " category_name (image_file_name) float64 ...\n",
281
+ " stimulusRepeats (image_file_name) int64 ...\n",
282
+ " * neuroid (neuroid) object 'r0318' 'r0327' 'r0328' 'r0329' ...\n",
283
+ " region (neuroid) object ...\n",
284
+ " animal (neuroid) object ...,\n",
285
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data18/NatRev/data.nc': <xarray.DataArray (image_file_name: 442200, neuroid: 10)>\n",
286
+ " [4422000 values with dtype=float64]\n",
287
+ " Coordinates:\n",
288
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data18/NatRev/stimuli//f1b63f3190c3daf20ca8cd63a8bfbc92.jpg' ...\n",
289
+ " category_name (image_file_name) float64 ...\n",
290
+ " stimulusRepeats (image_file_name) int64 ...\n",
291
+ " * neuroid (neuroid) object 'r0345' 'r0347' 'r0348' 'r0349' ...\n",
292
+ " region (neuroid) object ...\n",
293
+ " animal (neuroid) object ...,\n",
294
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data19/NatRev/data.nc': <xarray.DataArray (image_file_name: 85400, neuroid: 10)>\n",
295
+ " [854000 values with dtype=float64]\n",
296
+ " Coordinates:\n",
297
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data19/NatRev/stimuli//0e0f0d0c50ab071194afd9eab58176a5.jpg' ...\n",
298
+ " category_name (image_file_name) float64 ...\n",
299
+ " stimulusRepeats (image_file_name) int64 ...\n",
300
+ " * neuroid (neuroid) object 'z0112' 'z0114' 'z0115' 'z0117' ...\n",
301
+ " region (neuroid) object ...\n",
302
+ " animal (neuroid) object ...,\n",
303
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data2/DGrat/data.nc': <xarray.DataArray (image_file_name: 81200, neuroid: 10)>\n",
304
+ " [812000 values with dtype=float64]\n",
305
+ " Coordinates:\n",
306
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data2/DGrat/stimuli//ae71c370f1fe84b15efbcfe7fe87e837.jpg' ...\n",
307
+ " category_name (image_file_name) float64 ...\n",
308
+ " stimulusRepeats (image_file_name) int64 ...\n",
309
+ " * neuroid (neuroid) object 'e0073' 'e0074' 'e0075' 'e0076' ...\n",
310
+ " region (neuroid) object ...\n",
311
+ " animal (neuroid) object ...,\n",
312
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data20/NatRev/data.nc': <xarray.DataArray (image_file_name: 34400, neuroid: 4)>\n",
313
+ " [137600 values with dtype=float64]\n",
314
+ " Coordinates:\n",
315
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data20/NatRev/stimuli//a19352ef8333a928074ec053907ee908.jpg' ...\n",
316
+ " category_name (image_file_name) float64 ...\n",
317
+ " stimulusRepeats (image_file_name) int64 ...\n",
318
+ " * neuroid (neuroid) object 'z0127' 'z0128' 'z0129' 'z0131'\n",
319
+ " region (neuroid) object ...\n",
320
+ " animal (neuroid) object ...,\n",
321
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data3/DGrat/data.nc': <xarray.DataArray (image_file_name: 233800, neuroid: 10)>\n",
322
+ " [2338000 values with dtype=float64]\n",
323
+ " Coordinates:\n",
324
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data3/DGrat/stimuli//1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
325
+ " category_name (image_file_name) float64 ...\n",
326
+ " stimulusRepeats (image_file_name) int64 ...\n",
327
+ " * neuroid (neuroid) object 'e0115' 'e0121' 'e0123' 'e0124' ...\n",
328
+ " region (neuroid) object ...\n",
329
+ " animal (neuroid) object ...,\n",
330
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data4/DGrat/data.nc': <xarray.DataArray (image_file_name: 306000, neuroid: 10)>\n",
331
+ " [3060000 values with dtype=float64]\n",
332
+ " Coordinates:\n",
333
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data4/DGrat/stimuli//eeac392eaf7590b19733c34f31b4322e.jpg' ...\n",
334
+ " category_name (image_file_name) float64 ...\n",
335
+ " stimulusRepeats (image_file_name) int64 ...\n",
336
+ " * neuroid (neuroid) object 'r0318' 'r0327' 'r0328' 'r0329' ...\n",
337
+ " region (neuroid) object ...\n",
338
+ " animal (neuroid) object ...,\n",
339
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data5/DGrat/data.nc': <xarray.DataArray (image_file_name: 159000, neuroid: 10)>\n",
340
+ " [1590000 values with dtype=float64]\n",
341
+ " Coordinates:\n",
342
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data5/DGrat/stimuli//eeac392eaf7590b19733c34f31b4322e.jpg' ...\n",
343
+ " category_name (image_file_name) float64 ...\n",
344
+ " stimulusRepeats (image_file_name) int64 ...\n",
345
+ " * neuroid (neuroid) object 'r0342' 'r0343' 'r0344' 'r0345' ...\n",
346
+ " region (neuroid) object ...\n",
347
+ " animal (neuroid) object ...,\n",
348
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data6/DGrat/data.nc': <xarray.DataArray (image_file_name: 107000, neuroid: 12)>\n",
349
+ " [1284000 values with dtype=float64]\n",
350
+ " Coordinates:\n",
351
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data6/DGrat/stimuli//8b7a5683eeb246ad9233f12ed4da41d4.jpg' ...\n",
352
+ " category_name (image_file_name) float64 ...\n",
353
+ " stimulusRepeats (image_file_name) int64 ...\n",
354
+ " * neuroid (neuroid) object 'r0358' 'r0360' 'z0111' 'z0112' ...\n",
355
+ " region (neuroid) object ...\n",
356
+ " animal (neuroid) object ...,\n",
357
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/Nat/data.nc': <xarray.DataArray (image_file_name: 3000, neuroid: 5)>\n",
358
+ " array([[ 0., nan, nan, nan, nan],\n",
359
+ " [ 0., nan, nan, nan, nan],\n",
360
+ " [ 0., nan, nan, nan, nan],\n",
361
+ " ...,\n",
362
+ " [nan, nan, nan, nan, nan],\n",
363
+ " [nan, nan, nan, nan, nan],\n",
364
+ " [nan, nan, nan, nan, nan]])\n",
365
+ " Coordinates:\n",
366
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/Nat/stimuli//63ffcec3141ad12614288d4946c84aa7.jpg' ...\n",
367
+ " category_name (image_file_name) float64 ...\n",
368
+ " stimulusRepeats (image_file_name) int64 ...\n",
369
+ " * neuroid (neuroid) object 'e0022' 'e0031' 'e0076' 'e0078' 'e0080'\n",
370
+ " region (neuroid) object ...\n",
371
+ " animal (neuroid) object ...,\n",
372
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/NatRev/data.nc': <xarray.DataArray (image_file_name: 115000, neuroid: 5)>\n",
373
+ " [575000 values with dtype=float64]\n",
374
+ " Coordinates:\n",
375
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/NatRev/stimuli//0c816a8354b91506395116bd8145f96b.jpg' ...\n",
376
+ " category_name (image_file_name) float64 ...\n",
377
+ " stimulusRepeats (image_file_name) int64 ...\n",
378
+ " * neuroid (neuroid) object 'e0017' 'e0018' 'e0021' 'e0022' 'e0024'\n",
379
+ " region (neuroid) object ...\n",
380
+ " animal (neuroid) object ...,\n",
381
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data8/NatRev/data.nc': <xarray.DataArray (image_file_name: 154200, neuroid: 10)>\n",
382
+ " [1542000 values with dtype=float64]\n",
383
+ " Coordinates:\n",
384
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data8/NatRev/stimuli//72946b32f074cea28fe58ee490b4b78b.jpg' ...\n",
385
+ " category_name (image_file_name) float64 ...\n",
386
+ " stimulusRepeats (image_file_name) int64 ...\n",
387
+ " * neuroid (neuroid) object 'e0026' 'e0028' 'e0029' 'e0030' ...\n",
388
+ " region (neuroid) object ...\n",
389
+ " animal (neuroid) object ...,\n",
390
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data9/NatRev/data.nc': <xarray.DataArray (image_file_name: 158600, neuroid: 10)>\n",
391
+ " [1586000 values with dtype=float64]\n",
392
+ " Coordinates:\n",
393
+ " * image_file_name (image_file_name) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data9/NatRev/stimuli//194cc7b0a35c9631d326864532eea21e.jpg' ...\n",
394
+ " category_name (image_file_name) float64 ...\n",
395
+ " stimulusRepeats (image_file_name) int64 ...\n",
396
+ " * neuroid (neuroid) object 'e0037' 'e0039' 'e0040' 'e0043' ...\n",
397
+ " region (neuroid) object ...\n",
398
+ " animal (neuroid) object ...}"
399
+ ]
400
+ },
401
+ "execution_count": 17,
402
+ "metadata": {},
403
+ "output_type": "execute_result"
404
+ }
405
+ ],
406
+ "source": [
407
+ "gd_arrays = {}\n",
408
+ "for f in nc_files:\n",
409
+ " gd_arrays[f] = xr.open_dataarray(f)\n",
410
+ "gd_arrays"
411
+ ]
412
+ },
413
+ {
414
+ "cell_type": "code",
415
+ "execution_count": 18,
416
+ "metadata": {},
417
+ "outputs": [
418
+ {
419
+ "data": {
420
+ "text/plain": [
421
+ "{'/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data1/DGrat/data.nc': <xarray.DataArray (neuroid: 10, presentation: 96000)>\n",
422
+ " array([[ 1., 0., 1., ..., nan, nan, nan],\n",
423
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
424
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
425
+ " ...,\n",
426
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
427
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
428
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
429
+ " Coordinates:\n",
430
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data1/DGrat/stimuli//1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
431
+ " category_name (presentation) float64 ...\n",
432
+ " stimulusRepeats (presentation) int64 ...\n",
433
+ " * neuroid (neuroid) object 'e0022' 'e0026' 'e0031' 'e0033' ...\n",
434
+ " region (neuroid) object ...\n",
435
+ " animal (neuroid) object ...\n",
436
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
437
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438
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data10/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 83600)>\n",
439
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440
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441
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442
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443
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444
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
445
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
446
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447
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data10/NatRev/stimuli//0c816a8354b91506395116bd8145f96b.jpg' ...\n",
448
+ " category_name (presentation) float64 ...\n",
449
+ " stimulusRepeats (presentation) int64 ...\n",
450
+ " * neuroid (neuroid) object 'e0052' 'e0053' 'e0056' 'e0058' ...\n",
451
+ " region (neuroid) object ...\n",
452
+ " animal (neuroid) object ...\n",
453
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
454
+ " neuroid_id (neuroid) object 'e0052' 'e0053' 'e0056' 'e0058' ...,\n",
455
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data11/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 206000)>\n",
456
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457
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458
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
459
+ " ...,\n",
460
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
461
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
462
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
463
+ " Coordinates:\n",
464
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data11/NatRev/stimuli//b968f6d096d2f8e50c91877430918209.jpg' ...\n",
465
+ " category_name (presentation) float64 ...\n",
466
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467
+ " * neuroid (neuroid) object 'e0068' 'e0070' 'e0071' 'e0072' ...\n",
468
+ " region (neuroid) object ...\n",
469
+ " animal (neuroid) object ...\n",
470
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
471
+ " neuroid_id (neuroid) object 'e0068' 'e0070' 'e0071' 'e0072' ...,\n",
472
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data12/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 92200)>\n",
473
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
474
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
475
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
476
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477
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
478
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
479
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
480
+ " Coordinates:\n",
481
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data12/NatRev/stimuli//f8b630444bd0994d3572dc9c8f816fa2.jpg' ...\n",
482
+ " category_name (presentation) float64 ...\n",
483
+ " stimulusRepeats (presentation) int64 ...\n",
484
+ " * neuroid (neuroid) object 'e0082' 'e0083' 'e0086' 'e0087' ...\n",
485
+ " region (neuroid) object ...\n",
486
+ " animal (neuroid) object ...\n",
487
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
488
+ " neuroid_id (neuroid) object 'e0082' 'e0083' 'e0086' 'e0087' ...,\n",
489
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data13/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 218200)>\n",
490
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
491
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
492
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
493
+ " ...,\n",
494
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
495
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
496
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
497
+ " Coordinates:\n",
498
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data13/NatRev/stimuli//f8b630444bd0994d3572dc9c8f816fa2.jpg' ...\n",
499
+ " category_name (presentation) float64 ...\n",
500
+ " stimulusRepeats (presentation) int64 ...\n",
501
+ " * neuroid (neuroid) object 'e0100' 'e0101' 'e0102' 'e0103' ...\n",
502
+ " region (neuroid) object ...\n",
503
+ " animal (neuroid) object ...\n",
504
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
505
+ " neuroid_id (neuroid) object 'e0100' 'e0101' 'e0102' 'e0103' ...,\n",
506
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data14/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 156600)>\n",
507
+ " array([[ 0., 1., 0., ..., nan, nan, nan],\n",
508
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
509
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
510
+ " ...,\n",
511
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
512
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
513
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
514
+ " Coordinates:\n",
515
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data14/NatRev/stimuli//a19352ef8333a928074ec053907ee908.jpg' ...\n",
516
+ " category_name (presentation) float64 ...\n",
517
+ " stimulusRepeats (presentation) int64 ...\n",
518
+ " * neuroid (neuroid) object 'e0112' 'e0113' 'e0115' 'e0116' ...\n",
519
+ " region (neuroid) object ...\n",
520
+ " animal (neuroid) object ...\n",
521
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
522
+ " neuroid_id (neuroid) object 'e0112' 'e0113' 'e0115' 'e0116' ...,\n",
523
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data15/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 169502)>\n",
524
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
525
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
526
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
527
+ " ...,\n",
528
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
529
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
530
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
531
+ " Coordinates:\n",
532
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data15/NatRev/stimuli//48de0ccb6c97faf706a7ebe79daf72b9.jpg' ...\n",
533
+ " category_name (presentation) float64 ...\n",
534
+ " stimulusRepeats (presentation) int64 ...\n",
535
+ " * neuroid (neuroid) object 'e0125' 'e0128' 'e0129' 'e0131' ...\n",
536
+ " region (neuroid) object ...\n",
537
+ " animal (neuroid) object ...\n",
538
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
539
+ " neuroid_id (neuroid) object 'e0125' 'e0128' 'e0129' 'e0131' ...,\n",
540
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data16/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 263401)>\n",
541
+ " array([[ 0., 1., 1., ..., nan, nan, nan],\n",
542
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
543
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
544
+ " ...,\n",
545
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
546
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
547
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
548
+ " Coordinates:\n",
549
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data16/NatRev/stimuli//055c156dce8b5b6ffb7f8888b9f69b51.jpg' ...\n",
550
+ " category_name (presentation) float64 ...\n",
551
+ " stimulusRepeats (presentation) int64 ...\n",
552
+ " * neuroid (neuroid) object 'r0187A' 'r0228C' 'r0229B' 'r0230B' ...\n",
553
+ " region (neuroid) object ...\n",
554
+ " animal (neuroid) object ...\n",
555
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
556
+ " neuroid_id (neuroid) object 'r0187A' 'r0228C' 'r0229B' 'r0230B' ...,\n",
557
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data17/NatRev/data.nc': <xarray.DataArray (neuroid: 9, presentation: 328800)>\n",
558
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
559
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
560
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
561
+ " ...,\n",
562
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
563
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
564
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
565
+ " Coordinates:\n",
566
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data17/NatRev/stimuli//a2a009e4d1611647420b2d3ba3c68ce4.jpg' ...\n",
567
+ " category_name (presentation) float64 ...\n",
568
+ " stimulusRepeats (presentation) int64 ...\n",
569
+ " * neuroid (neuroid) object 'r0318' 'r0327' 'r0328' 'r0329' ...\n",
570
+ " region (neuroid) object ...\n",
571
+ " animal (neuroid) object ...\n",
572
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
573
+ " neuroid_id (neuroid) object 'r0318' 'r0327' 'r0328' 'r0329' ...,\n",
574
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data18/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 442200)>\n",
575
+ " array([[ 1., 1., 1., ..., nan, nan, nan],\n",
576
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
577
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
578
+ " ...,\n",
579
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
580
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
581
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
582
+ " Coordinates:\n",
583
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data18/NatRev/stimuli//f1b63f3190c3daf20ca8cd63a8bfbc92.jpg' ...\n",
584
+ " category_name (presentation) float64 ...\n",
585
+ " stimulusRepeats (presentation) int64 ...\n",
586
+ " * neuroid (neuroid) object 'r0345' 'r0347' 'r0348' 'r0349' ...\n",
587
+ " region (neuroid) object ...\n",
588
+ " animal (neuroid) object ...\n",
589
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
590
+ " neuroid_id (neuroid) object 'r0345' 'r0347' 'r0348' 'r0349' ...,\n",
591
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data19/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 85400)>\n",
592
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
593
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
594
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
595
+ " ...,\n",
596
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
597
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
598
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
599
+ " Coordinates:\n",
600
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data19/NatRev/stimuli//0e0f0d0c50ab071194afd9eab58176a5.jpg' ...\n",
601
+ " category_name (presentation) float64 ...\n",
602
+ " stimulusRepeats (presentation) int64 ...\n",
603
+ " * neuroid (neuroid) object 'z0112' 'z0114' 'z0115' 'z0117' ...\n",
604
+ " region (neuroid) object ...\n",
605
+ " animal (neuroid) object ...\n",
606
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
607
+ " neuroid_id (neuroid) object 'z0112' 'z0114' 'z0115' 'z0117' ...,\n",
608
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data2/DGrat/data.nc': <xarray.DataArray (neuroid: 10, presentation: 81200)>\n",
609
+ " array([[ 0., 1., 0., ..., nan, nan, nan],\n",
610
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
611
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
612
+ " ...,\n",
613
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
614
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
615
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
616
+ " Coordinates:\n",
617
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data2/DGrat/stimuli//ae71c370f1fe84b15efbcfe7fe87e837.jpg' ...\n",
618
+ " category_name (presentation) float64 ...\n",
619
+ " stimulusRepeats (presentation) int64 ...\n",
620
+ " * neuroid (neuroid) object 'e0073' 'e0074' 'e0075' 'e0076' ...\n",
621
+ " region (neuroid) object ...\n",
622
+ " animal (neuroid) object ...\n",
623
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
624
+ " neuroid_id (neuroid) object 'e0073' 'e0074' 'e0075' 'e0076' ...,\n",
625
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data20/NatRev/data.nc': <xarray.DataArray (neuroid: 4, presentation: 34400)>\n",
626
+ " array([[ 3., 1., 0., ..., nan, nan, nan],\n",
627
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
628
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
629
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
630
+ " Coordinates:\n",
631
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data20/NatRev/stimuli//a19352ef8333a928074ec053907ee908.jpg' ...\n",
632
+ " category_name (presentation) float64 ...\n",
633
+ " stimulusRepeats (presentation) int64 ...\n",
634
+ " * neuroid (neuroid) object 'z0127' 'z0128' 'z0129' 'z0131'\n",
635
+ " region (neuroid) object ...\n",
636
+ " animal (neuroid) object ...\n",
637
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
638
+ " neuroid_id (neuroid) object 'z0127' 'z0128' 'z0129' 'z0131',\n",
639
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data3/DGrat/data.nc': <xarray.DataArray (neuroid: 10, presentation: 233800)>\n",
640
+ " array([[ 2., 1., 0., ..., nan, nan, nan],\n",
641
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
642
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
643
+ " ...,\n",
644
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
645
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
646
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
647
+ " Coordinates:\n",
648
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data3/DGrat/stimuli//1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
649
+ " category_name (presentation) float64 ...\n",
650
+ " stimulusRepeats (presentation) int64 ...\n",
651
+ " * neuroid (neuroid) object 'e0115' 'e0121' 'e0123' 'e0124' ...\n",
652
+ " region (neuroid) object ...\n",
653
+ " animal (neuroid) object ...\n",
654
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
655
+ " neuroid_id (neuroid) object 'e0115' 'e0121' 'e0123' 'e0124' ...,\n",
656
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data4/DGrat/data.nc': <xarray.DataArray (neuroid: 10, presentation: 306000)>\n",
657
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
658
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
659
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
660
+ " ...,\n",
661
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
662
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
663
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
664
+ " Coordinates:\n",
665
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data4/DGrat/stimuli//eeac392eaf7590b19733c34f31b4322e.jpg' ...\n",
666
+ " category_name (presentation) float64 ...\n",
667
+ " stimulusRepeats (presentation) int64 ...\n",
668
+ " * neuroid (neuroid) object 'r0318' 'r0327' 'r0328' 'r0329' ...\n",
669
+ " region (neuroid) object ...\n",
670
+ " animal (neuroid) object ...\n",
671
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
672
+ " neuroid_id (neuroid) object 'r0318' 'r0327' 'r0328' 'r0329' ...,\n",
673
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data5/DGrat/data.nc': <xarray.DataArray (neuroid: 10, presentation: 159000)>\n",
674
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
675
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
676
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
677
+ " ...,\n",
678
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
679
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
680
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
681
+ " Coordinates:\n",
682
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data5/DGrat/stimuli//eeac392eaf7590b19733c34f31b4322e.jpg' ...\n",
683
+ " category_name (presentation) float64 ...\n",
684
+ " stimulusRepeats (presentation) int64 ...\n",
685
+ " * neuroid (neuroid) object 'r0342' 'r0343' 'r0344' 'r0345' ...\n",
686
+ " region (neuroid) object ...\n",
687
+ " animal (neuroid) object ...\n",
688
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
689
+ " neuroid_id (neuroid) object 'r0342' 'r0343' 'r0344' 'r0345' ...,\n",
690
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data6/DGrat/data.nc': <xarray.DataArray (neuroid: 12, presentation: 107000)>\n",
691
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
692
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
693
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
694
+ " ...,\n",
695
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
696
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
697
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
698
+ " Coordinates:\n",
699
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data6/DGrat/stimuli//8b7a5683eeb246ad9233f12ed4da41d4.jpg' ...\n",
700
+ " category_name (presentation) float64 ...\n",
701
+ " stimulusRepeats (presentation) int64 ...\n",
702
+ " * neuroid (neuroid) object 'r0358' 'r0360' 'z0111' 'z0112' ...\n",
703
+ " region (neuroid) object ...\n",
704
+ " animal (neuroid) object ...\n",
705
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
706
+ " neuroid_id (neuroid) object 'r0358' 'r0360' 'z0111' 'z0112' ...,\n",
707
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/Nat/data.nc': <xarray.DataArray (neuroid: 5, presentation: 3000)>\n",
708
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
709
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
710
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
711
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
712
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
713
+ " Coordinates:\n",
714
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/Nat/stimuli//63ffcec3141ad12614288d4946c84aa7.jpg' ...\n",
715
+ " category_name (presentation) float64 ...\n",
716
+ " stimulusRepeats (presentation) int64 ...\n",
717
+ " * neuroid (neuroid) object 'e0022' 'e0031' 'e0076' 'e0078' 'e0080'\n",
718
+ " region (neuroid) object ...\n",
719
+ " animal (neuroid) object ...\n",
720
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
721
+ " neuroid_id (neuroid) object 'e0022' 'e0031' 'e0076' 'e0078' 'e0080',\n",
722
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/NatRev/data.nc': <xarray.DataArray (neuroid: 5, presentation: 115000)>\n",
723
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
724
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
725
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
726
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
727
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
728
+ " Coordinates:\n",
729
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/NatRev/stimuli//0c816a8354b91506395116bd8145f96b.jpg' ...\n",
730
+ " category_name (presentation) float64 ...\n",
731
+ " stimulusRepeats (presentation) int64 ...\n",
732
+ " * neuroid (neuroid) object 'e0017' 'e0018' 'e0021' 'e0022' 'e0024'\n",
733
+ " region (neuroid) object ...\n",
734
+ " animal (neuroid) object ...\n",
735
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
736
+ " neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' 'e0022' 'e0024',\n",
737
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data8/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 154200)>\n",
738
+ " array([[ 1., 0., 0., ..., nan, nan, nan],\n",
739
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
740
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
741
+ " ...,\n",
742
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
743
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
744
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
745
+ " Coordinates:\n",
746
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data8/NatRev/stimuli//72946b32f074cea28fe58ee490b4b78b.jpg' ...\n",
747
+ " category_name (presentation) float64 ...\n",
748
+ " stimulusRepeats (presentation) int64 ...\n",
749
+ " * neuroid (neuroid) object 'e0026' 'e0028' 'e0029' 'e0030' ...\n",
750
+ " region (neuroid) object ...\n",
751
+ " animal (neuroid) object ...\n",
752
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
753
+ " neuroid_id (neuroid) object 'e0026' 'e0028' 'e0029' 'e0030' ...,\n",
754
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data9/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 158600)>\n",
755
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
756
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
757
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
758
+ " ...,\n",
759
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
760
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
761
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
762
+ " Coordinates:\n",
763
+ " * presentation (presentation) object '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data9/NatRev/stimuli//194cc7b0a35c9631d326864532eea21e.jpg' ...\n",
764
+ " category_name (presentation) float64 ...\n",
765
+ " stimulusRepeats (presentation) int64 ...\n",
766
+ " * neuroid (neuroid) object 'e0037' 'e0039' 'e0040' 'e0043' ...\n",
767
+ " region (neuroid) object ...\n",
768
+ " animal (neuroid) object ...\n",
769
+ " presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
770
+ " neuroid_id (neuroid) object 'e0037' 'e0039' 'e0040' 'e0043' ...}"
771
+ ]
772
+ },
773
+ "execution_count": 18,
774
+ "metadata": {},
775
+ "output_type": "execute_result"
776
+ }
777
+ ],
778
+ "source": [
779
+ "for gd_array_key in gd_arrays:\n",
780
+ " gd_array = gd_arrays[gd_array_key]\n",
781
+ " gd_array = gd_array.T.rename({\"image_file_name\": \"presentation\"})\n",
782
+ " gd_array.coords[\"presentation_id\"] = (\"presentation\", range(gd_array.shape[1]))\n",
783
+ " gd_array.coords[\"neuroid_id\"] = (\"neuroid\", gd_array[\"neuroid\"].values)\n",
784
+ " gd_arrays[gd_array_key] = gd_array\n",
785
+ "gd_arrays"
786
+ ]
787
+ },
788
+ {
789
+ "cell_type": "code",
790
+ "execution_count": 19,
791
+ "metadata": {},
792
+ "outputs": [],
793
+ "source": [
794
+ "def massage_file_name(file_name):\n",
795
+ " split = re.split(\"\\\\\\\\|/\", file_name)\n",
796
+ " split = [t for t in split if t]\n",
797
+ " relative_path = os.path.join(*split[-5:])\n",
798
+ " full_path = os.path.join(\"/\", *split)\n",
799
+ " basename = split[-1]\n",
800
+ " exists = os.path.exists(full_path)\n",
801
+ " sha1 = kf(full_path).sha1\n",
802
+ " result = {\n",
803
+ " \"image_file_path_original\": relative_path,\n",
804
+ " \"image_id\": sha1\n",
805
+ " }\n",
806
+ " return result"
807
+ ]
808
+ },
809
+ {
810
+ "cell_type": "code",
811
+ "execution_count": null,
812
+ "metadata": {},
813
+ "outputs": [],
814
+ "source": [
815
+ "for gd_array_key in gd_arrays:\n",
816
+ " print(gd_array_key)\n",
817
+ " gd_array = gd_arrays[gd_array_key]\n",
818
+ " df_massage = pd.DataFrame(list(map(massage_file_name, gd_array[\"presentation\"].values)))\n",
819
+ " for column in df_massage.columns:\n",
820
+ " gd_array.coords[column] = (\"presentation\", df_massage[column])\n",
821
+ " gd_array.reset_index([\"neuroid\", \"presentation\"], drop=True, inplace=True)\n",
822
+ "gd_arrays"
823
+ ]
824
+ },
825
+ {
826
+ "cell_type": "markdown",
827
+ "metadata": {},
828
+ "source": [
829
+ "#### Combine arrays"
830
+ ]
831
+ },
832
+ {
833
+ "cell_type": "code",
834
+ "execution_count": 32,
835
+ "metadata": {},
836
+ "outputs": [
837
+ {
838
+ "data": {
839
+ "text/plain": [
840
+ "(195, 3494103)"
841
+ ]
842
+ },
843
+ "execution_count": 32,
844
+ "metadata": {},
845
+ "output_type": "execute_result"
846
+ }
847
+ ],
848
+ "source": [
849
+ "neuroid_sum, presentation_sum = (0, 0)\n",
850
+ "for k in gd_arrays:\n",
851
+ " neuroid_sum = neuroid_sum + gd_arrays[k].shape[0]\n",
852
+ " presentation_sum = presentation_sum + gd_arrays[k].shape[1]\n",
853
+ "(neuroid_sum, presentation_sum)"
854
+ ]
855
+ },
856
+ {
857
+ "cell_type": "code",
858
+ "execution_count": null,
859
+ "metadata": {},
860
+ "outputs": [],
861
+ "source": [
862
+ "for gd_array_key in gd_arrays:\n",
863
+ " gd_array = gd_arrays[gd_array_key]\n",
864
+ " mkgu.assemblies.gather_indexes(gd_array)\n",
865
+ "gd_arrays"
866
+ ]
867
+ },
868
+ {
869
+ "cell_type": "code",
870
+ "execution_count": 36,
871
+ "metadata": {},
872
+ "outputs": [
873
+ {
874
+ "data": {
875
+ "text/plain": [
876
+ "{'/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data1/DGrat/data.nc': <xarray.DataArray (neuroid: 10, presentation: 96000)>\n",
877
+ " array([[ 1., 0., 1., ..., nan, nan, nan],\n",
878
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
879
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
880
+ " ...,\n",
881
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
882
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
883
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
884
+ " Coordinates:\n",
885
+ " * neuroid (neuroid) MultiIndex\n",
886
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
887
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
888
+ " - neuroid_id (neuroid) object 'e0022' 'e0026' 'e0031' ...\n",
889
+ " * presentation (presentation) MultiIndex\n",
890
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
891
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
892
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
893
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
894
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
895
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data10/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 83600)>\n",
896
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
897
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
898
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
899
+ " ...,\n",
900
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
901
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
902
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
903
+ " Coordinates:\n",
904
+ " * neuroid (neuroid) MultiIndex\n",
905
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
906
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
907
+ " - neuroid_id (neuroid) object 'e0052' 'e0053' 'e0056' ...\n",
908
+ " * presentation (presentation) MultiIndex\n",
909
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
910
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
911
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
912
+ " - image_file_path_original (presentation) object 'v2-1/V2Data10/NatRev/stimuli/0c816a8354b91506395116bd8145f96b.jpg' ...\n",
913
+ " - image_id (presentation) object '29c60651ac5fc69074f1ae4181a24367b3b7508e' ...,\n",
914
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data11/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 206000)>\n",
915
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
916
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
917
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
918
+ " ...,\n",
919
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
920
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
921
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
922
+ " Coordinates:\n",
923
+ " * neuroid (neuroid) MultiIndex\n",
924
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
925
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
926
+ " - neuroid_id (neuroid) object 'e0068' 'e0070' 'e0071' ...\n",
927
+ " * presentation (presentation) MultiIndex\n",
928
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
929
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
930
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
931
+ " - image_file_path_original (presentation) object 'v2-1/V2Data11/NatRev/stimuli/b968f6d096d2f8e50c91877430918209.jpg' ...\n",
932
+ " - image_id (presentation) object 'bc181f74b409ac8c800f782ec37ae0ae5465e84a' ...,\n",
933
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data12/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 92200)>\n",
934
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
935
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
936
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
937
+ " ...,\n",
938
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
939
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
940
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
941
+ " Coordinates:\n",
942
+ " * neuroid (neuroid) MultiIndex\n",
943
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
944
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
945
+ " - neuroid_id (neuroid) object 'e0082' 'e0083' 'e0086' ...\n",
946
+ " * presentation (presentation) MultiIndex\n",
947
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
948
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
949
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
950
+ " - image_file_path_original (presentation) object 'v2-1/V2Data12/NatRev/stimuli/f8b630444bd0994d3572dc9c8f816fa2.jpg' ...\n",
951
+ " - image_id (presentation) object '01550f3de9897bd8b17670b57a4372adece61d77' ...,\n",
952
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data13/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 218200)>\n",
953
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
954
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
955
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
956
+ " ...,\n",
957
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
958
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
959
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
960
+ " Coordinates:\n",
961
+ " * neuroid (neuroid) MultiIndex\n",
962
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
963
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
964
+ " - neuroid_id (neuroid) object 'e0100' 'e0101' 'e0102' ...\n",
965
+ " * presentation (presentation) MultiIndex\n",
966
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
967
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
968
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
969
+ " - image_file_path_original (presentation) object 'v2-1/V2Data13/NatRev/stimuli/f8b630444bd0994d3572dc9c8f816fa2.jpg' ...\n",
970
+ " - image_id (presentation) object '01550f3de9897bd8b17670b57a4372adece61d77' ...,\n",
971
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data14/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 156600)>\n",
972
+ " array([[ 0., 1., 0., ..., nan, nan, nan],\n",
973
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
974
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
975
+ " ...,\n",
976
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
977
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
978
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
979
+ " Coordinates:\n",
980
+ " * neuroid (neuroid) MultiIndex\n",
981
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
982
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
983
+ " - neuroid_id (neuroid) object 'e0112' 'e0113' 'e0115' ...\n",
984
+ " * presentation (presentation) MultiIndex\n",
985
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
986
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
987
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
988
+ " - image_file_path_original (presentation) object 'v2-1/V2Data14/NatRev/stimuli/a19352ef8333a928074ec053907ee908.jpg' ...\n",
989
+ " - image_id (presentation) object '571610d95c33ada91a60ca178a59733da62f7328' ...,\n",
990
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data15/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 169502)>\n",
991
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
992
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
993
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
994
+ " ...,\n",
995
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
996
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
997
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
998
+ " Coordinates:\n",
999
+ " * neuroid (neuroid) MultiIndex\n",
1000
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1001
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'm' ...\n",
1002
+ " - neuroid_id (neuroid) object 'e0125' 'e0128' 'e0129' ...\n",
1003
+ " * presentation (presentation) MultiIndex\n",
1004
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1005
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1006
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1007
+ " - image_file_path_original (presentation) object 'v2-1/V2Data15/NatRev/stimuli/48de0ccb6c97faf706a7ebe79daf72b9.jpg' ...\n",
1008
+ " - image_id (presentation) object '59ba3ea4c9ce48cd5024438198cb757db5347c94' ...,\n",
1009
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data16/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 263401)>\n",
1010
+ " array([[ 0., 1., 1., ..., nan, nan, nan],\n",
1011
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1012
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1013
+ " ...,\n",
1014
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1015
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1016
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1017
+ " Coordinates:\n",
1018
+ " * neuroid (neuroid) MultiIndex\n",
1019
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1020
+ " - animal (neuroid) object 'r' 'r' 'r' 'r' 'r' 'r' 'r' ...\n",
1021
+ " - neuroid_id (neuroid) object 'r0187A' 'r0228C' 'r0229B' ...\n",
1022
+ " * presentation (presentation) MultiIndex\n",
1023
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1024
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1025
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1026
+ " - image_file_path_original (presentation) object 'v2-1/V2Data16/NatRev/stimuli/055c156dce8b5b6ffb7f8888b9f69b51.jpg' ...\n",
1027
+ " - image_id (presentation) object '7bf66f3594d414d585155279211c4c7e8901c71b' ...,\n",
1028
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data17/NatRev/data.nc': <xarray.DataArray (neuroid: 9, presentation: 328800)>\n",
1029
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
1030
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1031
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1032
+ " ...,\n",
1033
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1034
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1035
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1036
+ " Coordinates:\n",
1037
+ " * neuroid (neuroid) MultiIndex\n",
1038
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1039
+ " - animal (neuroid) object 'r' 'r' 'r' 'r' 'r' 'r' 'r' ...\n",
1040
+ " - neuroid_id (neuroid) object 'r0318' 'r0327' 'r0328' ...\n",
1041
+ " * presentation (presentation) MultiIndex\n",
1042
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1043
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1044
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1045
+ " - image_file_path_original (presentation) object 'v2-1/V2Data17/NatRev/stimuli/a2a009e4d1611647420b2d3ba3c68ce4.jpg' ...\n",
1046
+ " - image_id (presentation) object '8d99050553593b9120aa9dfe011dc23d60f0e0fa' ...,\n",
1047
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data18/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 442200)>\n",
1048
+ " array([[ 1., 1., 1., ..., nan, nan, nan],\n",
1049
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1050
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1051
+ " ...,\n",
1052
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1053
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1054
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1055
+ " Coordinates:\n",
1056
+ " * neuroid (neuroid) MultiIndex\n",
1057
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1058
+ " - animal (neuroid) object 'r' 'r' 'r' 'r' 'r' 'r' 'r' ...\n",
1059
+ " - neuroid_id (neuroid) object 'r0345' 'r0347' 'r0348' ...\n",
1060
+ " * presentation (presentation) MultiIndex\n",
1061
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1062
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1063
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1064
+ " - image_file_path_original (presentation) object 'v2-1/V2Data18/NatRev/stimuli/f1b63f3190c3daf20ca8cd63a8bfbc92.jpg' ...\n",
1065
+ " - image_id (presentation) object 'a52c97d3d5bd3fb628ec8f522598edcbd0975a0a' ...,\n",
1066
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data19/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 85400)>\n",
1067
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
1068
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1069
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1070
+ " ...,\n",
1071
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1072
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1073
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1074
+ " Coordinates:\n",
1075
+ " * neuroid (neuroid) MultiIndex\n",
1076
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1077
+ " - animal (neuroid) object 'z' 'z' 'z' 'z' 'z' 'z' 'z' ...\n",
1078
+ " - neuroid_id (neuroid) object 'z0112' 'z0114' 'z0115' ...\n",
1079
+ " * presentation (presentation) MultiIndex\n",
1080
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1081
+ " - stimulusRepeats (presentation) int64 8 8 8 8 8 8 8 8 8 8 8 8 8 ...\n",
1082
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1083
+ " - image_file_path_original (presentation) object 'v2-1/V2Data19/NatRev/stimuli/0e0f0d0c50ab071194afd9eab58176a5.jpg' ...\n",
1084
+ " - image_id (presentation) object '7076be667d2a2ae093335e19d8e523f20237fc38' ...,\n",
1085
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data2/DGrat/data.nc': <xarray.DataArray (neuroid: 10, presentation: 81200)>\n",
1086
+ " array([[ 0., 1., 0., ..., nan, nan, nan],\n",
1087
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1088
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1089
+ " ...,\n",
1090
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1091
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1092
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1093
+ " Coordinates:\n",
1094
+ " * neuroid (neuroid) MultiIndex\n",
1095
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1096
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1097
+ " - neuroid_id (neuroid) object 'e0073' 'e0074' 'e0075' ...\n",
1098
+ " * presentation (presentation) MultiIndex\n",
1099
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1100
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1101
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1102
+ " - image_file_path_original (presentation) object 'v2-1/V2Data2/DGrat/stimuli/ae71c370f1fe84b15efbcfe7fe87e837.jpg' ...\n",
1103
+ " - image_id (presentation) object 'd56a2b21343dfdc6778bb7ad3e1abc6faa9e188f' ...,\n",
1104
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data20/NatRev/data.nc': <xarray.DataArray (neuroid: 4, presentation: 34400)>\n",
1105
+ " array([[ 3., 1., 0., ..., nan, nan, nan],\n",
1106
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1107
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1108
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1109
+ " Coordinates:\n",
1110
+ " * neuroid (neuroid) MultiIndex\n",
1111
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2'\n",
1112
+ " - animal (neuroid) object 'z' 'z' 'z' 'z'\n",
1113
+ " - neuroid_id (neuroid) object 'z0127' 'z0128' 'z0129' 'z0131'\n",
1114
+ " * presentation (presentation) MultiIndex\n",
1115
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1116
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1117
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1118
+ " - image_file_path_original (presentation) object 'v2-1/V2Data20/NatRev/stimuli/a19352ef8333a928074ec053907ee908.jpg' ...\n",
1119
+ " - image_id (presentation) object '571610d95c33ada91a60ca178a59733da62f7328' ...,\n",
1120
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data3/DGrat/data.nc': <xarray.DataArray (neuroid: 10, presentation: 233800)>\n",
1121
+ " array([[ 2., 1., 0., ..., nan, nan, nan],\n",
1122
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1123
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1124
+ " ...,\n",
1125
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1126
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1127
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1128
+ " Coordinates:\n",
1129
+ " * neuroid (neuroid) MultiIndex\n",
1130
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1131
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'r' ...\n",
1132
+ " - neuroid_id (neuroid) object 'e0115' 'e0121' 'e0123' ...\n",
1133
+ " * presentation (presentation) MultiIndex\n",
1134
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1135
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1136
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1137
+ " - image_file_path_original (presentation) object 'v2-1/V2Data3/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
1138
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
1139
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data4/DGrat/data.nc': <xarray.DataArray (neuroid: 10, presentation: 306000)>\n",
1140
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
1141
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1142
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1143
+ " ...,\n",
1144
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1145
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1146
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1147
+ " Coordinates:\n",
1148
+ " * neuroid (neuroid) MultiIndex\n",
1149
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1150
+ " - animal (neuroid) object 'r' 'r' 'r' 'r' 'r' 'r' 'r' ...\n",
1151
+ " - neuroid_id (neuroid) object 'r0318' 'r0327' 'r0328' ...\n",
1152
+ " * presentation (presentation) MultiIndex\n",
1153
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1154
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1155
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1156
+ " - image_file_path_original (presentation) object 'v2-1/V2Data4/DGrat/stimuli/eeac392eaf7590b19733c34f31b4322e.jpg' ...\n",
1157
+ " - image_id (presentation) object 'c123ec93249023ecabb8c1ab5c92505f13851de0' ...,\n",
1158
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data5/DGrat/data.nc': <xarray.DataArray (neuroid: 10, presentation: 159000)>\n",
1159
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
1160
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1161
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1162
+ " ...,\n",
1163
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1164
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1165
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1166
+ " Coordinates:\n",
1167
+ " * neuroid (neuroid) MultiIndex\n",
1168
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1169
+ " - animal (neuroid) object 'r' 'r' 'r' 'r' 'r' 'r' 'r' ...\n",
1170
+ " - neuroid_id (neuroid) object 'r0342' 'r0343' 'r0344' ...\n",
1171
+ " * presentation (presentation) MultiIndex\n",
1172
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1173
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1174
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1175
+ " - image_file_path_original (presentation) object 'v2-1/V2Data5/DGrat/stimuli/eeac392eaf7590b19733c34f31b4322e.jpg' ...\n",
1176
+ " - image_id (presentation) object 'c123ec93249023ecabb8c1ab5c92505f13851de0' ...,\n",
1177
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data6/DGrat/data.nc': <xarray.DataArray (neuroid: 12, presentation: 107000)>\n",
1178
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
1179
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1180
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1181
+ " ...,\n",
1182
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1183
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1184
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1185
+ " Coordinates:\n",
1186
+ " * neuroid (neuroid) MultiIndex\n",
1187
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1188
+ " - animal (neuroid) object 'r' 'r' 'z' 'z' 'z' 'z' 'z' ...\n",
1189
+ " - neuroid_id (neuroid) object 'r0358' 'r0360' 'z0111' ...\n",
1190
+ " * presentation (presentation) MultiIndex\n",
1191
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1192
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1193
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1194
+ " - image_file_path_original (presentation) object 'v2-1/V2Data6/DGrat/stimuli/8b7a5683eeb246ad9233f12ed4da41d4.jpg' ...\n",
1195
+ " - image_id (presentation) object '4cea493813d1570a056a269a65581676cf3bebb5' ...,\n",
1196
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/Nat/data.nc': <xarray.DataArray (neuroid: 5, presentation: 3000)>\n",
1197
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
1198
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1199
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1200
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1201
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1202
+ " Coordinates:\n",
1203
+ " * neuroid (neuroid) MultiIndex\n",
1204
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2'\n",
1205
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e'\n",
1206
+ " - neuroid_id (neuroid) object 'e0022' 'e0031' 'e0076' ...\n",
1207
+ " * presentation (presentation) MultiIndex\n",
1208
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1209
+ " - stimulusRepeats (presentation) int64 10 10 10 10 10 10 10 10 ...\n",
1210
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1211
+ " - image_file_path_original (presentation) object 'v2-1/V2Data7/Nat/stimuli/63ffcec3141ad12614288d4946c84aa7.jpg' ...\n",
1212
+ " - image_id (presentation) object '138accd40c9f83c0c959d3dc4205233690f7e027' ...,\n",
1213
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/NatRev/data.nc': <xarray.DataArray (neuroid: 5, presentation: 115000)>\n",
1214
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
1215
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1216
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1217
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1218
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1219
+ " Coordinates:\n",
1220
+ " * neuroid (neuroid) MultiIndex\n",
1221
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2'\n",
1222
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e'\n",
1223
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
1224
+ " * presentation (presentation) MultiIndex\n",
1225
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1226
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1227
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1228
+ " - image_file_path_original (presentation) object 'v2-1/V2Data7/NatRev/stimuli/0c816a8354b91506395116bd8145f96b.jpg' ...\n",
1229
+ " - image_id (presentation) object '29c60651ac5fc69074f1ae4181a24367b3b7508e' ...,\n",
1230
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data8/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 154200)>\n",
1231
+ " array([[ 1., 0., 0., ..., nan, nan, nan],\n",
1232
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1233
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1234
+ " ...,\n",
1235
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1236
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1237
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1238
+ " Coordinates:\n",
1239
+ " * neuroid (neuroid) MultiIndex\n",
1240
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1241
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1242
+ " - neuroid_id (neuroid) object 'e0026' 'e0028' 'e0029' ...\n",
1243
+ " * presentation (presentation) MultiIndex\n",
1244
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1245
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1246
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1247
+ " - image_file_path_original (presentation) object 'v2-1/V2Data8/NatRev/stimuli/72946b32f074cea28fe58ee490b4b78b.jpg' ...\n",
1248
+ " - image_id (presentation) object '5eba8683b5dc817b44977b4bed1a640fad308363' ...,\n",
1249
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data9/NatRev/data.nc': <xarray.DataArray (neuroid: 10, presentation: 158600)>\n",
1250
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
1251
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1252
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1253
+ " ...,\n",
1254
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1255
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1256
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1257
+ " Coordinates:\n",
1258
+ " * neuroid (neuroid) MultiIndex\n",
1259
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1260
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1261
+ " - neuroid_id (neuroid) object 'e0037' 'e0039' 'e0040' ...\n",
1262
+ " * presentation (presentation) MultiIndex\n",
1263
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1264
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1265
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1266
+ " - image_file_path_original (presentation) object 'v2-1/V2Data9/NatRev/stimuli/194cc7b0a35c9631d326864532eea21e.jpg' ...\n",
1267
+ " - image_id (presentation) object 'd74c5c31ea2625c047c980025127cbb7fcaabcac' ...}"
1268
+ ]
1269
+ },
1270
+ "execution_count": 36,
1271
+ "metadata": {},
1272
+ "output_type": "execute_result"
1273
+ }
1274
+ ],
1275
+ "source": [
1276
+ "gd_arrays"
1277
+ ]
1278
+ },
1279
+ {
1280
+ "cell_type": "code",
1281
+ "execution_count": 67,
1282
+ "metadata": {},
1283
+ "outputs": [
1284
+ {
1285
+ "data": {
1286
+ "text/plain": [
1287
+ "<xarray.DataArray 'category_name' (presentation: 158600)>\n",
1288
+ "array([nan, nan, nan, ..., nan, nan, nan])\n",
1289
+ "Coordinates:\n",
1290
+ " * presentation (presentation) MultiIndex\n",
1291
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1292
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1293
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1294
+ " - image_file_path_original (presentation) object 'v2-1/V2Data9/NatRev/stimuli/194cc7b0a35c9631d326864532eea21e.jpg' ...\n",
1295
+ " - image_id (presentation) object 'd74c5c31ea2625c047c980025127cbb7fcaabcac' ..."
1296
+ ]
1297
+ },
1298
+ "execution_count": 67,
1299
+ "metadata": {},
1300
+ "output_type": "execute_result"
1301
+ }
1302
+ ],
1303
+ "source": [
1304
+ "gd_arrays[gd_arrays_keys[0]][\"category_name\"]"
1305
+ ]
1306
+ },
1307
+ {
1308
+ "cell_type": "code",
1309
+ "execution_count": 68,
1310
+ "metadata": {},
1311
+ "outputs": [
1312
+ {
1313
+ "data": {
1314
+ "text/plain": [
1315
+ "dtype('float64')"
1316
+ ]
1317
+ },
1318
+ "execution_count": 68,
1319
+ "metadata": {},
1320
+ "output_type": "execute_result"
1321
+ }
1322
+ ],
1323
+ "source": [
1324
+ "gd_arrays[gd_arrays_keys[0]][\"category_name\"].dtype"
1325
+ ]
1326
+ },
1327
+ {
1328
+ "cell_type": "code",
1329
+ "execution_count": 66,
1330
+ "metadata": {},
1331
+ "outputs": [
1332
+ {
1333
+ "data": {
1334
+ "text/plain": [
1335
+ "(array([], dtype=int64),)"
1336
+ ]
1337
+ },
1338
+ "execution_count": 66,
1339
+ "metadata": {},
1340
+ "output_type": "execute_result"
1341
+ }
1342
+ ],
1343
+ "source": [
1344
+ "np.nonzero(~np.isnan(gd_arrays[gd_arrays_keys[0]][\"category_name\"].values))"
1345
+ ]
1346
+ },
1347
+ {
1348
+ "cell_type": "code",
1349
+ "execution_count": 69,
1350
+ "metadata": {},
1351
+ "outputs": [],
1352
+ "source": [
1353
+ "for da in gd_arrays.values():\n",
1354
+ " da.reset_index(\"category_name\", drop=True, inplace=True)"
1355
+ ]
1356
+ },
1357
+ {
1358
+ "cell_type": "code",
1359
+ "execution_count": 43,
1360
+ "metadata": {},
1361
+ "outputs": [
1362
+ {
1363
+ "data": {
1364
+ "text/plain": [
1365
+ "<xarray.DataArray (neuroid: 2, presentation: 4312)>\n",
1366
+ "array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1367
+ " [ 0, 1, 2, ..., 158146, 158147, 158148]])\n",
1368
+ "Coordinates:\n",
1369
+ " * neuroid (neuroid) MultiIndex\n",
1370
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1371
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1372
+ " - neuroid_id (neuroid) object 'e0037' 'e0039' 'e0040' ...\n",
1373
+ " * presentation (presentation) MultiIndex\n",
1374
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1375
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1376
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1377
+ " - image_file_path_original (presentation) object 'v2-1/V2Data9/NatRev/stimuli/194cc7b0a35c9631d326864532eea21e.jpg' ...\n",
1378
+ " - image_id (presentation) object 'd74c5c31ea2625c047c980025127cbb7fcaabcac' ..."
1379
+ ]
1380
+ },
1381
+ "execution_count": 43,
1382
+ "metadata": {},
1383
+ "output_type": "execute_result"
1384
+ }
1385
+ ],
1386
+ "source": [
1387
+ "np.nonzero(~np.isnan(list(gd_arrays.values())[0]))"
1388
+ ]
1389
+ },
1390
+ {
1391
+ "cell_type": "code",
1392
+ "execution_count": 48,
1393
+ "metadata": {},
1394
+ "outputs": [
1395
+ {
1396
+ "data": {
1397
+ "text/plain": [
1398
+ "(array([0, 0, 0, ..., 9, 9, 9]),\n",
1399
+ " array([ 0, 1, 2, ..., 158146, 158147, 158148]))"
1400
+ ]
1401
+ },
1402
+ "execution_count": 48,
1403
+ "metadata": {},
1404
+ "output_type": "execute_result"
1405
+ }
1406
+ ],
1407
+ "source": [
1408
+ "np.nonzero(~np.isnan(list(gd_arrays.values())[0].values))"
1409
+ ]
1410
+ },
1411
+ {
1412
+ "cell_type": "code",
1413
+ "execution_count": 50,
1414
+ "metadata": {},
1415
+ "outputs": [
1416
+ {
1417
+ "data": {
1418
+ "text/plain": [
1419
+ "['/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data9/NatRev/data.nc',\n",
1420
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data18/NatRev/data.nc',\n",
1421
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data1/DGrat/data.nc',\n",
1422
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data2/DGrat/data.nc',\n",
1423
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data3/DGrat/data.nc',\n",
1424
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data4/DGrat/data.nc',\n",
1425
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data5/DGrat/data.nc',\n",
1426
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data6/DGrat/data.nc',\n",
1427
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/Nat/data.nc',\n",
1428
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/NatRev/data.nc',\n",
1429
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data8/NatRev/data.nc',\n",
1430
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data10/NatRev/data.nc',\n",
1431
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data11/NatRev/data.nc',\n",
1432
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data12/NatRev/data.nc',\n",
1433
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data13/NatRev/data.nc',\n",
1434
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data14/NatRev/data.nc',\n",
1435
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data15/NatRev/data.nc',\n",
1436
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data16/NatRev/data.nc',\n",
1437
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data17/NatRev/data.nc',\n",
1438
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data19/NatRev/data.nc',\n",
1439
+ " '/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data20/NatRev/data.nc']"
1440
+ ]
1441
+ },
1442
+ "execution_count": 50,
1443
+ "metadata": {},
1444
+ "output_type": "execute_result"
1445
+ }
1446
+ ],
1447
+ "source": [
1448
+ "gd_arrays_keys = list(gd_arrays.keys())\n",
1449
+ "gd_arrays_keys"
1450
+ ]
1451
+ },
1452
+ {
1453
+ "cell_type": "code",
1454
+ "execution_count": 70,
1455
+ "metadata": {},
1456
+ "outputs": [
1457
+ {
1458
+ "name": "stderr",
1459
+ "output_type": "stream",
1460
+ "text": [
1461
+ "/braintree/home/jjpr/anaconda3/envs/mkgu_packaging/lib/python3.6/site-packages/xarray/core/dtypes.py:23: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`.\n",
1462
+ " if np.issubdtype(dtype, float):\n"
1463
+ ]
1464
+ },
1465
+ {
1466
+ "data": {
1467
+ "text/plain": [
1468
+ "(<xarray.DataArray (neuroid: 20, presentation: 464600)>\n",
1469
+ " array([[nan, 0., nan, ..., nan, nan, nan],\n",
1470
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1471
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1472
+ " ...,\n",
1473
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1474
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1475
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1476
+ " Coordinates:\n",
1477
+ " * neuroid (neuroid) MultiIndex\n",
1478
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1479
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1480
+ " - neuroid_id (neuroid) object 'e0037' 'e0039' 'e0040' ...\n",
1481
+ " * presentation (presentation) MultiIndex\n",
1482
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1483
+ " - presentation_id (presentation) int64 0 0 1 1 2 2 3 3 4 4 5 5 6 ...\n",
1484
+ " - image_file_path_original (presentation) object 'v2-1/V2Data4/DGrat/stimuli/eeac392eaf7590b19733c34f31b4322e.jpg' ...\n",
1485
+ " - image_id (presentation) object 'c123ec93249023ecabb8c1ab5c92505f13851de0' ...,\n",
1486
+ " <xarray.DataArray (neuroid: 20, presentation: 464600)>\n",
1487
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
1488
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1489
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1490
+ " ...,\n",
1491
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1492
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1493
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1494
+ " Coordinates:\n",
1495
+ " * neuroid (neuroid) MultiIndex\n",
1496
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1497
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1498
+ " - neuroid_id (neuroid) object 'e0037' 'e0039' 'e0040' ...\n",
1499
+ " * presentation (presentation) MultiIndex\n",
1500
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1501
+ " - presentation_id (presentation) int64 0 0 1 1 2 2 3 3 4 4 5 5 6 ...\n",
1502
+ " - image_file_path_original (presentation) object 'v2-1/V2Data4/DGrat/stimuli/eeac392eaf7590b19733c34f31b4322e.jpg' ...\n",
1503
+ " - image_id (presentation) object 'c123ec93249023ecabb8c1ab5c92505f13851de0' ...)"
1504
+ ]
1505
+ },
1506
+ "execution_count": 70,
1507
+ "metadata": {},
1508
+ "output_type": "execute_result"
1509
+ }
1510
+ ],
1511
+ "source": [
1512
+ "align_test = xr.align(gd_arrays[gd_arrays_keys[0]], gd_arrays[gd_arrays_keys[5]], join=\"outer\")\n",
1513
+ "align_test"
1514
+ ]
1515
+ },
1516
+ {
1517
+ "cell_type": "code",
1518
+ "execution_count": 71,
1519
+ "metadata": {},
1520
+ "outputs": [
1521
+ {
1522
+ "data": {
1523
+ "text/plain": [
1524
+ "[<xarray.DataArray ()>\n",
1525
+ " array(False), <xarray.DataArray ()>\n",
1526
+ " array(False)]"
1527
+ ]
1528
+ },
1529
+ "execution_count": 71,
1530
+ "metadata": {},
1531
+ "output_type": "execute_result"
1532
+ }
1533
+ ],
1534
+ "source": [
1535
+ "[np.isnan(a).all() for a in align_test]"
1536
+ ]
1537
+ },
1538
+ {
1539
+ "cell_type": "code",
1540
+ "execution_count": 60,
1541
+ "metadata": {},
1542
+ "outputs": [
1543
+ {
1544
+ "data": {
1545
+ "text/plain": [
1546
+ "dtype('float64')"
1547
+ ]
1548
+ },
1549
+ "execution_count": 60,
1550
+ "metadata": {},
1551
+ "output_type": "execute_result"
1552
+ }
1553
+ ],
1554
+ "source": [
1555
+ "align_test[0].data.dtype"
1556
+ ]
1557
+ },
1558
+ {
1559
+ "cell_type": "code",
1560
+ "execution_count": 61,
1561
+ "metadata": {},
1562
+ "outputs": [
1563
+ {
1564
+ "data": {
1565
+ "text/plain": [
1566
+ "<xarray.DataArray (neuroid: 20, presentation: 464600)>\n",
1567
+ "array([[nan, nan, nan, ..., nan, nan, nan],\n",
1568
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1569
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1570
+ " ...,\n",
1571
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1572
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1573
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1574
+ "Coordinates:\n",
1575
+ " * neuroid (neuroid) MultiIndex\n",
1576
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1577
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1578
+ " - neuroid_id (neuroid) object 'e0037' 'e0039' 'e0040' ...\n",
1579
+ " * presentation (presentation) MultiIndex\n",
1580
+ " - category_name (presentation) object nan nan nan nan nan nan ...\n",
1581
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1582
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1583
+ " - image_file_path_original (presentation) object 'v2-1/V2Data9/NatRev/stimuli/194cc7b0a35c9631d326864532eea21e.jpg' ...\n",
1584
+ " - image_id (presentation) object 'd74c5c31ea2625c047c980025127cbb7fcaabcac' ..."
1585
+ ]
1586
+ },
1587
+ "execution_count": 61,
1588
+ "metadata": {},
1589
+ "output_type": "execute_result"
1590
+ }
1591
+ ],
1592
+ "source": [
1593
+ "align_test[0]"
1594
+ ]
1595
+ },
1596
+ {
1597
+ "cell_type": "code",
1598
+ "execution_count": 54,
1599
+ "metadata": {},
1600
+ "outputs": [
1601
+ {
1602
+ "data": {
1603
+ "text/plain": [
1604
+ "(<xarray.DataArray (neuroid: 10, presentation: 158600)>\n",
1605
+ " array([[ 0., 0., 0., ..., nan, nan, nan],\n",
1606
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1607
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1608
+ " ...,\n",
1609
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1610
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1611
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1612
+ " Coordinates:\n",
1613
+ " * neuroid (neuroid) MultiIndex\n",
1614
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1615
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1616
+ " - neuroid_id (neuroid) object 'e0037' 'e0039' 'e0040' ...\n",
1617
+ " * presentation (presentation) MultiIndex\n",
1618
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1619
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1620
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1621
+ " - image_file_path_original (presentation) object 'v2-1/V2Data9/NatRev/stimuli/194cc7b0a35c9631d326864532eea21e.jpg' ...\n",
1622
+ " - image_id (presentation) object 'd74c5c31ea2625c047c980025127cbb7fcaabcac' ...,\n",
1623
+ " <xarray.DataArray (neuroid: 10, presentation: 306000)>\n",
1624
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
1625
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1626
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1627
+ " ...,\n",
1628
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1629
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
1630
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
1631
+ " Coordinates:\n",
1632
+ " * neuroid (neuroid) MultiIndex\n",
1633
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1634
+ " - animal (neuroid) object 'r' 'r' 'r' 'r' 'r' 'r' 'r' ...\n",
1635
+ " - neuroid_id (neuroid) object 'r0318' 'r0327' 'r0328' ...\n",
1636
+ " * presentation (presentation) MultiIndex\n",
1637
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1638
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1639
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1640
+ " - image_file_path_original (presentation) object 'v2-1/V2Data4/DGrat/stimuli/eeac392eaf7590b19733c34f31b4322e.jpg' ...\n",
1641
+ " - image_id (presentation) object 'c123ec93249023ecabb8c1ab5c92505f13851de0' ...)"
1642
+ ]
1643
+ },
1644
+ "execution_count": 54,
1645
+ "metadata": {},
1646
+ "output_type": "execute_result"
1647
+ }
1648
+ ],
1649
+ "source": [
1650
+ "(gd_arrays[gd_arrays_keys[0]], gd_arrays[gd_arrays_keys[5]])"
1651
+ ]
1652
+ },
1653
+ {
1654
+ "cell_type": "code",
1655
+ "execution_count": 57,
1656
+ "metadata": {},
1657
+ "outputs": [
1658
+ {
1659
+ "data": {
1660
+ "text/plain": [
1661
+ "[('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data9/NatRev/data.nc',\n",
1662
+ " 50399,\n",
1663
+ " <xarray.DataArray (neuroid: 2, presentation: 4312)>\n",
1664
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1665
+ " [ 0, 1, 2, ..., 158146, 158147, 158148]])\n",
1666
+ " Coordinates:\n",
1667
+ " * neuroid (neuroid) MultiIndex\n",
1668
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1669
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1670
+ " - neuroid_id (neuroid) object 'e0037' 'e0039' 'e0040' ...\n",
1671
+ " * presentation (presentation) MultiIndex\n",
1672
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1673
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1674
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1675
+ " - image_file_path_original (presentation) object 'v2-1/V2Data9/NatRev/stimuli/194cc7b0a35c9631d326864532eea21e.jpg' ...\n",
1676
+ " - image_id (presentation) object 'd74c5c31ea2625c047c980025127cbb7fcaabcac' ...),\n",
1677
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data18/NatRev/data.nc',\n",
1678
+ " 242510,\n",
1679
+ " <xarray.DataArray (neuroid: 2, presentation: 6355)>\n",
1680
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1681
+ " [ 0, 1, 2, ..., 434488, 434489, 434490]])\n",
1682
+ " Coordinates:\n",
1683
+ " * neuroid (neuroid) MultiIndex\n",
1684
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1685
+ " - animal (neuroid) object 'r' 'r' 'r' 'r' 'r' 'r' 'r' ...\n",
1686
+ " - neuroid_id (neuroid) object 'r0345' 'r0347' 'r0348' ...\n",
1687
+ " * presentation (presentation) MultiIndex\n",
1688
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1689
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1690
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1691
+ " - image_file_path_original (presentation) object 'v2-1/V2Data18/NatRev/stimuli/f1b63f3190c3daf20ca8cd63a8bfbc92.jpg' ...\n",
1692
+ " - image_id (presentation) object 'a52c97d3d5bd3fb628ec8f522598edcbd0975a0a' ...),\n",
1693
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data1/DGrat/data.nc',\n",
1694
+ " 56000,\n",
1695
+ " <xarray.DataArray (neuroid: 2, presentation: 1772)>\n",
1696
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1697
+ " [ 0, 1, 2, ..., 88140, 88141, 88142]])\n",
1698
+ " Coordinates:\n",
1699
+ " * neuroid (neuroid) MultiIndex\n",
1700
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1701
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1702
+ " - neuroid_id (neuroid) object 'e0022' 'e0026' 'e0031' ...\n",
1703
+ " * presentation (presentation) MultiIndex\n",
1704
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1705
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1706
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1707
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
1708
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...),\n",
1709
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data2/DGrat/data.nc',\n",
1710
+ " 41200,\n",
1711
+ " <xarray.DataArray (neuroid: 2, presentation: 1695)>\n",
1712
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1713
+ " [ 0, 1, 2, ..., 73327, 73328, 73329]])\n",
1714
+ " Coordinates:\n",
1715
+ " * neuroid (neuroid) MultiIndex\n",
1716
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1717
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1718
+ " - neuroid_id (neuroid) object 'e0073' 'e0074' 'e0075' ...\n",
1719
+ " * presentation (presentation) MultiIndex\n",
1720
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1721
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1722
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1723
+ " - image_file_path_original (presentation) object 'v2-1/V2Data2/DGrat/stimuli/ae71c370f1fe84b15efbcfe7fe87e837.jpg' ...\n",
1724
+ " - image_id (presentation) object 'd56a2b21343dfdc6778bb7ad3e1abc6faa9e188f' ...),\n",
1725
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data3/DGrat/data.nc',\n",
1726
+ " 70800,\n",
1727
+ " <xarray.DataArray (neuroid: 2, presentation: 2697)>\n",
1728
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1729
+ " [ 0, 1, 2, ..., 229235, 229236, 229237]])\n",
1730
+ " Coordinates:\n",
1731
+ " * neuroid (neuroid) MultiIndex\n",
1732
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1733
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'r' ...\n",
1734
+ " - neuroid_id (neuroid) object 'e0115' 'e0121' 'e0123' ...\n",
1735
+ " * presentation (presentation) MultiIndex\n",
1736
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1737
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1738
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1739
+ " - image_file_path_original (presentation) object 'v2-1/V2Data3/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
1740
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...),\n",
1741
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data4/DGrat/data.nc',\n",
1742
+ " 72000,\n",
1743
+ " <xarray.DataArray (neuroid: 2, presentation: 1890)>\n",
1744
+ " array([[ 1, 1, 1, ..., 9, 9, 9],\n",
1745
+ " [ 9000, 9001, 9002, ..., 270257, 270258, 270259]])\n",
1746
+ " Coordinates:\n",
1747
+ " * neuroid (neuroid) MultiIndex\n",
1748
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1749
+ " - animal (neuroid) object 'r' 'r' 'r' 'r' 'r' 'r' 'r' ...\n",
1750
+ " - neuroid_id (neuroid) object 'r0318' 'r0327' 'r0328' ...\n",
1751
+ " * presentation (presentation) MultiIndex\n",
1752
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1753
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1754
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1755
+ " - image_file_path_original (presentation) object 'v2-1/V2Data4/DGrat/stimuli/eeac392eaf7590b19733c34f31b4322e.jpg' ...\n",
1756
+ " - image_id (presentation) object 'c123ec93249023ecabb8c1ab5c92505f13851de0' ...),\n",
1757
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data5/DGrat/data.nc',\n",
1758
+ " 60000,\n",
1759
+ " <xarray.DataArray (neuroid: 2, presentation: 1985)>\n",
1760
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1761
+ " [ 0, 1, 2, ..., 158400, 158401, 158402]])\n",
1762
+ " Coordinates:\n",
1763
+ " * neuroid (neuroid) MultiIndex\n",
1764
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1765
+ " - animal (neuroid) object 'r' 'r' 'r' 'r' 'r' 'r' 'r' ...\n",
1766
+ " - neuroid_id (neuroid) object 'r0342' 'r0343' 'r0344' ...\n",
1767
+ " * presentation (presentation) MultiIndex\n",
1768
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1769
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1770
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1771
+ " - image_file_path_original (presentation) object 'v2-1/V2Data5/DGrat/stimuli/eeac392eaf7590b19733c34f31b4322e.jpg' ...\n",
1772
+ " - image_id (presentation) object 'c123ec93249023ecabb8c1ab5c92505f13851de0' ...),\n",
1773
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data6/DGrat/data.nc',\n",
1774
+ " 58000,\n",
1775
+ " <xarray.DataArray (neuroid: 2, presentation: 3100)>\n",
1776
+ " array([[ 0, 0, 0, ..., 11, 11, 11],\n",
1777
+ " [ 10, 11, 12, ..., 99287, 99288, 99289]])\n",
1778
+ " Coordinates:\n",
1779
+ " * neuroid (neuroid) MultiIndex\n",
1780
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1781
+ " - animal (neuroid) object 'r' 'r' 'z' 'z' 'z' 'z' 'z' ...\n",
1782
+ " - neuroid_id (neuroid) object 'r0358' 'r0360' 'z0111' ...\n",
1783
+ " * presentation (presentation) MultiIndex\n",
1784
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1785
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1786
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1787
+ " - image_file_path_original (presentation) object 'v2-1/V2Data6/DGrat/stimuli/8b7a5683eeb246ad9233f12ed4da41d4.jpg' ...\n",
1788
+ " - image_id (presentation) object '4cea493813d1570a056a269a65581676cf3bebb5' ...),\n",
1789
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/Nat/data.nc',\n",
1790
+ " 384,\n",
1791
+ " <xarray.DataArray (neuroid: 2, presentation: 383)>\n",
1792
+ " array([[ 0, 0, 0, ..., 4, 4, 4],\n",
1793
+ " [ 0, 1, 2, ..., 2450, 2451, 2452]])\n",
1794
+ " Coordinates:\n",
1795
+ " * neuroid (neuroid) MultiIndex\n",
1796
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2'\n",
1797
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e'\n",
1798
+ " - neuroid_id (neuroid) object 'e0022' 'e0031' 'e0076' ...\n",
1799
+ " * presentation (presentation) MultiIndex\n",
1800
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1801
+ " - stimulusRepeats (presentation) int64 10 10 10 10 10 10 10 10 ...\n",
1802
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1803
+ " - image_file_path_original (presentation) object 'v2-1/V2Data7/Nat/stimuli/63ffcec3141ad12614288d4946c84aa7.jpg' ...\n",
1804
+ " - image_id (presentation) object '138accd40c9f83c0c959d3dc4205233690f7e027' ...),\n",
1805
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data7/NatRev/data.nc',\n",
1806
+ " 25200,\n",
1807
+ " <xarray.DataArray (neuroid: 2, presentation: 2219)>\n",
1808
+ " array([[ 0, 0, 0, ..., 4, 4, 4],\n",
1809
+ " [ 0, 1, 2, ..., 114549, 114550, 114551]])\n",
1810
+ " Coordinates:\n",
1811
+ " * neuroid (neuroid) MultiIndex\n",
1812
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2'\n",
1813
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e'\n",
1814
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
1815
+ " * presentation (presentation) MultiIndex\n",
1816
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1817
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1818
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1819
+ " - image_file_path_original (presentation) object 'v2-1/V2Data7/NatRev/stimuli/0c816a8354b91506395116bd8145f96b.jpg' ...\n",
1820
+ " - image_id (presentation) object '29c60651ac5fc69074f1ae4181a24367b3b7508e' ...),\n",
1821
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data8/NatRev/data.nc',\n",
1822
+ " 50998,\n",
1823
+ " <xarray.DataArray (neuroid: 2, presentation: 4528)>\n",
1824
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1825
+ " [ 0, 1, 2, ..., 153855, 153856, 153857]])\n",
1826
+ " Coordinates:\n",
1827
+ " * neuroid (neuroid) MultiIndex\n",
1828
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1829
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1830
+ " - neuroid_id (neuroid) object 'e0026' 'e0028' 'e0029' ...\n",
1831
+ " * presentation (presentation) MultiIndex\n",
1832
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1833
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1834
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1835
+ " - image_file_path_original (presentation) object 'v2-1/V2Data8/NatRev/stimuli/72946b32f074cea28fe58ee490b4b78b.jpg' ...\n",
1836
+ " - image_id (presentation) object '5eba8683b5dc817b44977b4bed1a640fad308363' ...),\n",
1837
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data10/NatRev/data.nc',\n",
1838
+ " 33800,\n",
1839
+ " <xarray.DataArray (neuroid: 2, presentation: 2393)>\n",
1840
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1841
+ " [ 0, 1, 2, ..., 75875, 75876, 75877]])\n",
1842
+ " Coordinates:\n",
1843
+ " * neuroid (neuroid) MultiIndex\n",
1844
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1845
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1846
+ " - neuroid_id (neuroid) object 'e0052' 'e0053' 'e0056' ...\n",
1847
+ " * presentation (presentation) MultiIndex\n",
1848
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1849
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1850
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1851
+ " - image_file_path_original (presentation) object 'v2-1/V2Data10/NatRev/stimuli/0c816a8354b91506395116bd8145f96b.jpg' ...\n",
1852
+ " - image_id (presentation) object '29c60651ac5fc69074f1ae4181a24367b3b7508e' ...),\n",
1853
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data11/NatRev/data.nc',\n",
1854
+ " 90998,\n",
1855
+ " <xarray.DataArray (neuroid: 2, presentation: 4981)>\n",
1856
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1857
+ " [ 0, 1, 2, ..., 205687, 205688, 205689]])\n",
1858
+ " Coordinates:\n",
1859
+ " * neuroid (neuroid) MultiIndex\n",
1860
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1861
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1862
+ " - neuroid_id (neuroid) object 'e0068' 'e0070' 'e0071' ...\n",
1863
+ " * presentation (presentation) MultiIndex\n",
1864
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1865
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1866
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1867
+ " - image_file_path_original (presentation) object 'v2-1/V2Data11/NatRev/stimuli/b968f6d096d2f8e50c91877430918209.jpg' ...\n",
1868
+ " - image_id (presentation) object 'bc181f74b409ac8c800f782ec37ae0ae5465e84a' ...),\n",
1869
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data12/NatRev/data.nc',\n",
1870
+ " 25800,\n",
1871
+ " <xarray.DataArray (neuroid: 2, presentation: 2842)>\n",
1872
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1873
+ " [ 0, 1, 2, ..., 91829, 91830, 91831]])\n",
1874
+ " Coordinates:\n",
1875
+ " * neuroid (neuroid) MultiIndex\n",
1876
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1877
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1878
+ " - neuroid_id (neuroid) object 'e0082' 'e0083' 'e0086' ...\n",
1879
+ " * presentation (presentation) MultiIndex\n",
1880
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1881
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1882
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1883
+ " - image_file_path_original (presentation) object 'v2-1/V2Data12/NatRev/stimuli/f8b630444bd0994d3572dc9c8f816fa2.jpg' ...\n",
1884
+ " - image_id (presentation) object '01550f3de9897bd8b17670b57a4372adece61d77' ...),\n",
1885
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data13/NatRev/data.nc',\n",
1886
+ " 42399,\n",
1887
+ " <xarray.DataArray (neuroid: 2, presentation: 4981)>\n",
1888
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1889
+ " [ 0, 1, 2, ..., 217618, 217619, 217620]])\n",
1890
+ " Coordinates:\n",
1891
+ " * neuroid (neuroid) MultiIndex\n",
1892
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1893
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1894
+ " - neuroid_id (neuroid) object 'e0100' 'e0101' 'e0102' ...\n",
1895
+ " * presentation (presentation) MultiIndex\n",
1896
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1897
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1898
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1899
+ " - image_file_path_original (presentation) object 'v2-1/V2Data13/NatRev/stimuli/f8b630444bd0994d3572dc9c8f816fa2.jpg' ...\n",
1900
+ " - image_id (presentation) object '01550f3de9897bd8b17670b57a4372adece61d77' ...),\n",
1901
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data14/NatRev/data.nc',\n",
1902
+ " 27950,\n",
1903
+ " <xarray.DataArray (neuroid: 2, presentation: 5394)>\n",
1904
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1905
+ " [ 0, 1, 2, ..., 148618, 148619, 148620]])\n",
1906
+ " Coordinates:\n",
1907
+ " * neuroid (neuroid) MultiIndex\n",
1908
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1909
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
1910
+ " - neuroid_id (neuroid) object 'e0112' 'e0113' 'e0115' ...\n",
1911
+ " * presentation (presentation) MultiIndex\n",
1912
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1913
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1914
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1915
+ " - image_file_path_original (presentation) object 'v2-1/V2Data14/NatRev/stimuli/a19352ef8333a928074ec053907ee908.jpg' ...\n",
1916
+ " - image_id (presentation) object '571610d95c33ada91a60ca178a59733da62f7328' ...),\n",
1917
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data15/NatRev/data.nc',\n",
1918
+ " 29889,\n",
1919
+ " <xarray.DataArray (neuroid: 2, presentation: 3143)>\n",
1920
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1921
+ " [ 0, 1, 2, ..., 151925, 151926, 151927]])\n",
1922
+ " Coordinates:\n",
1923
+ " * neuroid (neuroid) MultiIndex\n",
1924
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1925
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'm' ...\n",
1926
+ " - neuroid_id (neuroid) object 'e0125' 'e0128' 'e0129' ...\n",
1927
+ " * presentation (presentation) MultiIndex\n",
1928
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1929
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1930
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1931
+ " - image_file_path_original (presentation) object 'v2-1/V2Data15/NatRev/stimuli/48de0ccb6c97faf706a7ebe79daf72b9.jpg' ...\n",
1932
+ " - image_id (presentation) object '59ba3ea4c9ce48cd5024438198cb757db5347c94' ...),\n",
1933
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data16/NatRev/data.nc',\n",
1934
+ " 67229,\n",
1935
+ " <xarray.DataArray (neuroid: 2, presentation: 10261)>\n",
1936
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1937
+ " [ 0, 1, 2, ..., 245526, 245527, 245528]])\n",
1938
+ " Coordinates:\n",
1939
+ " * neuroid (neuroid) MultiIndex\n",
1940
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1941
+ " - animal (neuroid) object 'r' 'r' 'r' 'r' 'r' 'r' 'r' ...\n",
1942
+ " - neuroid_id (neuroid) object 'r0187A' 'r0228C' 'r0229B' ...\n",
1943
+ " * presentation (presentation) MultiIndex\n",
1944
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1945
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1946
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1947
+ " - image_file_path_original (presentation) object 'v2-1/V2Data16/NatRev/stimuli/055c156dce8b5b6ffb7f8888b9f69b51.jpg' ...\n",
1948
+ " - image_id (presentation) object '7bf66f3594d414d585155279211c4c7e8901c71b' ...),\n",
1949
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data17/NatRev/data.nc',\n",
1950
+ " 196308,\n",
1951
+ " <xarray.DataArray (neuroid: 2, presentation: 2846)>\n",
1952
+ " array([[ 0, 0, 0, ..., 8, 8, 8],\n",
1953
+ " [ 0, 1, 2, ..., 311055, 311056, 311057]])\n",
1954
+ " Coordinates:\n",
1955
+ " * neuroid (neuroid) MultiIndex\n",
1956
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1957
+ " - animal (neuroid) object 'r' 'r' 'r' 'r' 'r' 'r' 'r' ...\n",
1958
+ " - neuroid_id (neuroid) object 'r0318' 'r0327' 'r0328' ...\n",
1959
+ " * presentation (presentation) MultiIndex\n",
1960
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1961
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1962
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1963
+ " - image_file_path_original (presentation) object 'v2-1/V2Data17/NatRev/stimuli/a2a009e4d1611647420b2d3ba3c68ce4.jpg' ...\n",
1964
+ " - image_id (presentation) object '8d99050553593b9120aa9dfe011dc23d60f0e0fa' ...),\n",
1965
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data19/NatRev/data.nc',\n",
1966
+ " 43000,\n",
1967
+ " <xarray.DataArray (neuroid: 2, presentation: 4882)>\n",
1968
+ " array([[ 0, 0, 0, ..., 9, 9, 9],\n",
1969
+ " [ 0, 1, 2, ..., 85088, 85089, 85090]])\n",
1970
+ " Coordinates:\n",
1971
+ " * neuroid (neuroid) MultiIndex\n",
1972
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
1973
+ " - animal (neuroid) object 'z' 'z' 'z' 'z' 'z' 'z' 'z' ...\n",
1974
+ " - neuroid_id (neuroid) object 'z0112' 'z0114' 'z0115' ...\n",
1975
+ " * presentation (presentation) MultiIndex\n",
1976
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1977
+ " - stimulusRepeats (presentation) int64 8 8 8 8 8 8 8 8 8 8 8 8 8 ...\n",
1978
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1979
+ " - image_file_path_original (presentation) object 'v2-1/V2Data19/NatRev/stimuli/0e0f0d0c50ab071194afd9eab58176a5.jpg' ...\n",
1980
+ " - image_id (presentation) object '7076be667d2a2ae093335e19d8e523f20237fc38' ...),\n",
1981
+ " ('/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/V2Data20/NatRev/data.nc',\n",
1982
+ " 17200,\n",
1983
+ " <xarray.DataArray (neuroid: 2, presentation: 2081)>\n",
1984
+ " array([[ 0, 0, 0, ..., 3, 3, 3],\n",
1985
+ " [ 0, 1, 2, ..., 33842, 33843, 33844]])\n",
1986
+ " Coordinates:\n",
1987
+ " * neuroid (neuroid) MultiIndex\n",
1988
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2'\n",
1989
+ " - animal (neuroid) object 'z' 'z' 'z' 'z'\n",
1990
+ " - neuroid_id (neuroid) object 'z0127' 'z0128' 'z0129' 'z0131'\n",
1991
+ " * presentation (presentation) MultiIndex\n",
1992
+ " - category_name (presentation) float64 nan nan nan nan nan nan ...\n",
1993
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
1994
+ " - presentation_id (presentation) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
1995
+ " - image_file_path_original (presentation) object 'v2-1/V2Data20/NatRev/stimuli/a19352ef8333a928074ec053907ee908.jpg' ...\n",
1996
+ " - image_id (presentation) object '571610d95c33ada91a60ca178a59733da62f7328' ...)]"
1997
+ ]
1998
+ },
1999
+ "execution_count": 57,
2000
+ "metadata": {},
2001
+ "output_type": "execute_result"
2002
+ }
2003
+ ],
2004
+ "source": [
2005
+ "[(k, len(np.unique(gd_arrays[k][\"image_id\"])), np.nonzero(~np.isnan(gd_arrays[k]))) for k in gd_arrays_keys]"
2006
+ ]
2007
+ },
2008
+ {
2009
+ "cell_type": "code",
2010
+ "execution_count": 72,
2011
+ "metadata": {},
2012
+ "outputs": [
2013
+ {
2014
+ "name": "stderr",
2015
+ "output_type": "stream",
2016
+ "text": [
2017
+ "/braintree/home/jjpr/anaconda3/envs/mkgu_packaging/lib/python3.6/site-packages/xarray/core/dtypes.py:23: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`.\n",
2018
+ " if np.issubdtype(dtype, float):\n"
2019
+ ]
2020
+ },
2021
+ {
2022
+ "data": {
2023
+ "text/plain": [
2024
+ "(<xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2025
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2026
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2027
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2028
+ " ...,\n",
2029
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2030
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2031
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2032
+ " Coordinates:\n",
2033
+ " * neuroid (neuroid) MultiIndex\n",
2034
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2035
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2036
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2037
+ " * presentation (presentation) MultiIndex\n",
2038
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2039
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2040
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2041
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2042
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2043
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2044
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2045
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2046
+ " ...,\n",
2047
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2048
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2049
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2050
+ " Coordinates:\n",
2051
+ " * neuroid (neuroid) MultiIndex\n",
2052
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2053
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2054
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2055
+ " * presentation (presentation) MultiIndex\n",
2056
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2057
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2058
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2059
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2060
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2061
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2062
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2063
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2064
+ " ...,\n",
2065
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2066
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2067
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2068
+ " Coordinates:\n",
2069
+ " * neuroid (neuroid) MultiIndex\n",
2070
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2071
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2072
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2073
+ " * presentation (presentation) MultiIndex\n",
2074
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2075
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2076
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2077
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2078
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2079
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2080
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2081
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2082
+ " ...,\n",
2083
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2084
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2085
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2086
+ " Coordinates:\n",
2087
+ " * neuroid (neuroid) MultiIndex\n",
2088
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2089
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2090
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2091
+ " * presentation (presentation) MultiIndex\n",
2092
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2093
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2094
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2095
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2096
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2097
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2098
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2099
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2100
+ " ...,\n",
2101
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2102
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2103
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2104
+ " Coordinates:\n",
2105
+ " * neuroid (neuroid) MultiIndex\n",
2106
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2107
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2108
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2109
+ " * presentation (presentation) MultiIndex\n",
2110
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2111
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2112
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2113
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2114
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2115
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2116
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2117
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2118
+ " ...,\n",
2119
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2120
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2121
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2122
+ " Coordinates:\n",
2123
+ " * neuroid (neuroid) MultiIndex\n",
2124
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2125
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2126
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2127
+ " * presentation (presentation) MultiIndex\n",
2128
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2129
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2130
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2131
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2132
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2133
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2134
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2135
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2136
+ " ...,\n",
2137
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2138
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2139
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2140
+ " Coordinates:\n",
2141
+ " * neuroid (neuroid) MultiIndex\n",
2142
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2143
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2144
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2145
+ " * presentation (presentation) MultiIndex\n",
2146
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2147
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2148
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2149
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2150
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2151
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2152
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2153
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2154
+ " ...,\n",
2155
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2156
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2157
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2158
+ " Coordinates:\n",
2159
+ " * neuroid (neuroid) MultiIndex\n",
2160
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2161
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2162
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2163
+ " * presentation (presentation) MultiIndex\n",
2164
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2165
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2166
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2167
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2168
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2169
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2170
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2171
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2172
+ " ...,\n",
2173
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2174
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2175
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2176
+ " Coordinates:\n",
2177
+ " * neuroid (neuroid) MultiIndex\n",
2178
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2179
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2180
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2181
+ " * presentation (presentation) MultiIndex\n",
2182
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2183
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2184
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2185
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2186
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2187
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2188
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2189
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2190
+ " ...,\n",
2191
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2192
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2193
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2194
+ " Coordinates:\n",
2195
+ " * neuroid (neuroid) MultiIndex\n",
2196
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2197
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2198
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2199
+ " * presentation (presentation) MultiIndex\n",
2200
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2201
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2202
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2203
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2204
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2205
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2206
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2207
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2208
+ " ...,\n",
2209
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2210
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2211
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2212
+ " Coordinates:\n",
2213
+ " * neuroid (neuroid) MultiIndex\n",
2214
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2215
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2216
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2217
+ " * presentation (presentation) MultiIndex\n",
2218
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2219
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2220
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2221
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2222
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2223
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2224
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2225
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2226
+ " ...,\n",
2227
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2228
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2229
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2230
+ " Coordinates:\n",
2231
+ " * neuroid (neuroid) MultiIndex\n",
2232
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2233
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2234
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2235
+ " * presentation (presentation) MultiIndex\n",
2236
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2237
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2238
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2239
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2240
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2241
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2242
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2243
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2244
+ " ...,\n",
2245
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2246
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2247
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2248
+ " Coordinates:\n",
2249
+ " * neuroid (neuroid) MultiIndex\n",
2250
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2251
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2252
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2253
+ " * presentation (presentation) MultiIndex\n",
2254
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2255
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2256
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2257
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2258
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2259
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2260
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2261
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2262
+ " ...,\n",
2263
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2264
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2265
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2266
+ " Coordinates:\n",
2267
+ " * neuroid (neuroid) MultiIndex\n",
2268
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2269
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2270
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2271
+ " * presentation (presentation) MultiIndex\n",
2272
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2273
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2274
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2275
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2276
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2277
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2278
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2279
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2280
+ " ...,\n",
2281
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2282
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2283
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2284
+ " Coordinates:\n",
2285
+ " * neuroid (neuroid) MultiIndex\n",
2286
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2287
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2288
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2289
+ " * presentation (presentation) MultiIndex\n",
2290
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2291
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2292
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2293
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2294
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2295
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2296
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2297
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2298
+ " ...,\n",
2299
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2300
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2301
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2302
+ " Coordinates:\n",
2303
+ " * neuroid (neuroid) MultiIndex\n",
2304
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2305
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2306
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2307
+ " * presentation (presentation) MultiIndex\n",
2308
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2309
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2310
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2311
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2312
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2313
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2314
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2315
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2316
+ " ...,\n",
2317
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2318
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2319
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2320
+ " Coordinates:\n",
2321
+ " * neuroid (neuroid) MultiIndex\n",
2322
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2323
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2324
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2325
+ " * presentation (presentation) MultiIndex\n",
2326
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2327
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2328
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2329
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2330
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2331
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2332
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2333
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2334
+ " ...,\n",
2335
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2336
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2337
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2338
+ " Coordinates:\n",
2339
+ " * neuroid (neuroid) MultiIndex\n",
2340
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2341
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2342
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2343
+ " * presentation (presentation) MultiIndex\n",
2344
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2345
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2346
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2347
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2348
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2349
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2350
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2351
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2352
+ " ...,\n",
2353
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2354
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2355
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2356
+ " Coordinates:\n",
2357
+ " * neuroid (neuroid) MultiIndex\n",
2358
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2359
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2360
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2361
+ " * presentation (presentation) MultiIndex\n",
2362
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2363
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2364
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2365
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2366
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2367
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2368
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2369
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2370
+ " ...,\n",
2371
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2372
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2373
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2374
+ " Coordinates:\n",
2375
+ " * neuroid (neuroid) MultiIndex\n",
2376
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2377
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2378
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2379
+ " * presentation (presentation) MultiIndex\n",
2380
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2381
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2382
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2383
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...,\n",
2384
+ " <xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2385
+ " array([[nan, nan, nan, ..., nan, nan, nan],\n",
2386
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2387
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2388
+ " ...,\n",
2389
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2390
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2391
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2392
+ " Coordinates:\n",
2393
+ " * neuroid (neuroid) MultiIndex\n",
2394
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2395
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2396
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2397
+ " * presentation (presentation) MultiIndex\n",
2398
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2399
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2400
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2401
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ...)"
2402
+ ]
2403
+ },
2404
+ "execution_count": 72,
2405
+ "metadata": {},
2406
+ "output_type": "execute_result"
2407
+ }
2408
+ ],
2409
+ "source": [
2410
+ "aligned = xr.align(*list(gd_arrays.values()), join=\"outer\")\n",
2411
+ "aligned"
2412
+ ]
2413
+ },
2414
+ {
2415
+ "cell_type": "code",
2416
+ "execution_count": 73,
2417
+ "metadata": {},
2418
+ "outputs": [
2419
+ {
2420
+ "data": {
2421
+ "text/plain": [
2422
+ "(135, 3494103)"
2423
+ ]
2424
+ },
2425
+ "execution_count": 73,
2426
+ "metadata": {},
2427
+ "output_type": "execute_result"
2428
+ }
2429
+ ],
2430
+ "source": [
2431
+ "aligned[0].shape"
2432
+ ]
2433
+ },
2434
+ {
2435
+ "cell_type": "code",
2436
+ "execution_count": 74,
2437
+ "metadata": {},
2438
+ "outputs": [
2439
+ {
2440
+ "data": {
2441
+ "text/plain": [
2442
+ "<xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2443
+ "array([[False, False, False, ..., False, False, False],\n",
2444
+ " [False, False, False, ..., False, False, False],\n",
2445
+ " [False, False, False, ..., False, False, False],\n",
2446
+ " ...,\n",
2447
+ " [False, False, False, ..., False, False, False],\n",
2448
+ " [False, False, False, ..., False, False, False],\n",
2449
+ " [False, False, False, ..., False, False, False]])\n",
2450
+ "Coordinates:\n",
2451
+ " * neuroid (neuroid) MultiIndex\n",
2452
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2453
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2454
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2455
+ " * presentation (presentation) MultiIndex\n",
2456
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2457
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2458
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2459
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ..."
2460
+ ]
2461
+ },
2462
+ "execution_count": 74,
2463
+ "metadata": {},
2464
+ "output_type": "execute_result"
2465
+ }
2466
+ ],
2467
+ "source": [
2468
+ "~np.isnan(aligned[0])"
2469
+ ]
2470
+ },
2471
+ {
2472
+ "cell_type": "code",
2473
+ "execution_count": 75,
2474
+ "metadata": {},
2475
+ "outputs": [
2476
+ {
2477
+ "data": {
2478
+ "text/plain": [
2479
+ "[<xarray.DataArray ()>\n",
2480
+ " array(True), <xarray.DataArray ()>\n",
2481
+ " array(True), <xarray.DataArray ()>\n",
2482
+ " array(True), <xarray.DataArray ()>\n",
2483
+ " array(True), <xarray.DataArray ()>\n",
2484
+ " array(True), <xarray.DataArray ()>\n",
2485
+ " array(True), <xarray.DataArray ()>\n",
2486
+ " array(True), <xarray.DataArray ()>\n",
2487
+ " array(True), <xarray.DataArray ()>\n",
2488
+ " array(True), <xarray.DataArray ()>\n",
2489
+ " array(True), <xarray.DataArray ()>\n",
2490
+ " array(True), <xarray.DataArray ()>\n",
2491
+ " array(True), <xarray.DataArray ()>\n",
2492
+ " array(True), <xarray.DataArray ()>\n",
2493
+ " array(True), <xarray.DataArray ()>\n",
2494
+ " array(True), <xarray.DataArray ()>\n",
2495
+ " array(True), <xarray.DataArray ()>\n",
2496
+ " array(True), <xarray.DataArray ()>\n",
2497
+ " array(True), <xarray.DataArray ()>\n",
2498
+ " array(True), <xarray.DataArray ()>\n",
2499
+ " array(True), <xarray.DataArray ()>\n",
2500
+ " array(True)]"
2501
+ ]
2502
+ },
2503
+ "execution_count": 75,
2504
+ "metadata": {},
2505
+ "output_type": "execute_result"
2506
+ }
2507
+ ],
2508
+ "source": [
2509
+ "[(~np.isnan(da)).any() for da in aligned]"
2510
+ ]
2511
+ },
2512
+ {
2513
+ "cell_type": "code",
2514
+ "execution_count": 76,
2515
+ "metadata": {},
2516
+ "outputs": [
2517
+ {
2518
+ "data": {
2519
+ "text/plain": [
2520
+ "(array([15, 15, 15, ..., 24, 24, 24]),\n",
2521
+ " array([ 18, 37, 56, ..., 3469049, 3469050, 3469051]))"
2522
+ ]
2523
+ },
2524
+ "execution_count": 76,
2525
+ "metadata": {},
2526
+ "output_type": "execute_result"
2527
+ }
2528
+ ],
2529
+ "source": [
2530
+ "np.nonzero(~np.isnan(aligned[0].values))"
2531
+ ]
2532
+ },
2533
+ {
2534
+ "cell_type": "raw",
2535
+ "metadata": {},
2536
+ "source": [
2537
+ "if the length of the presentation axis is the sum of the presentation axes of all the data sets, there won't be collision if we use xr.combine_first()"
2538
+ ]
2539
+ },
2540
+ {
2541
+ "cell_type": "code",
2542
+ "execution_count": 77,
2543
+ "metadata": {},
2544
+ "outputs": [
2545
+ {
2546
+ "data": {
2547
+ "text/plain": [
2548
+ "[array([52411563, 52411582, 52411601, ..., 87327521, 87327522, 87327523]),\n",
2549
+ " array([380857236, 380857255, 380857274, ..., 422741751, 422741752,\n",
2550
+ " 422741753]),\n",
2551
+ " array([ 10482309, 10482328, 10482347, ..., 137925857, 137925873,\n",
2552
+ " 137925889]),\n",
2553
+ " array([139764130, 139764149, 139764168, ..., 228509519, 228509538,\n",
2554
+ " 228509557]),\n",
2555
+ " array([237599016, 237599035, 237599054, ..., 334931465, 334931470,\n",
2556
+ " 334931475]),\n",
2557
+ " array([339102204, 339102223, 339102242, ..., 370033691, 370033694,\n",
2558
+ " 370033697]),\n",
2559
+ " array([370374932, 370374951, 370374970, ..., 408808251, 408808252,\n",
2560
+ " 408808253]),\n",
2561
+ " array([408810256, 408810275, 408810294, ..., 470028830, 470028844,\n",
2562
+ " 470028858]),\n",
2563
+ " array([ 13932012, 13932013, 13932014, 13932015, 13932016, 13932017,\n",
2564
+ " 13932018, 34897230, 34897231, 34897232, 34897233, 34897234,\n",
2565
+ " 34897235, 34897236, 34897237, 34897238, 34897239, 34897240,\n",
2566
+ " 34897241, 34897242, 34897243, 34897244, 34897245, 34897246,\n",
2567
+ " 34897247, 34897248, 34897249, 34897250, 34897251, 34897252,\n",
2568
+ " 34897253, 34897254, 34897255, 34897256, 34897257, 34897258,\n",
2569
+ " 34897259, 34897260, 34897261, 34897262, 34897263, 34897264,\n",
2570
+ " 34897265, 34897266, 34897267, 34897268, 34897269, 34897270,\n",
2571
+ " 34897271, 34897272, 34897273, 34897274, 34897275, 34897276,\n",
2572
+ " 34897277, 34897278, 34897279, 34897280, 34897281, 34897282,\n",
2573
+ " 34897283, 34897284, 34897285, 34897286, 34897287, 34897288,\n",
2574
+ " 34897289, 34897290, 34897291, 34897292, 34897293, 34897294,\n",
2575
+ " 34897295, 34897296, 34897297, 34897298, 34897299, 34897300,\n",
2576
+ " 34897301, 34897302, 34897303, 34897304, 34897305, 34897306,\n",
2577
+ " 34897307, 34897308, 34897309, 34897310, 34897311, 34897312,\n",
2578
+ " 34897313, 34897314, 34897315, 34897316, 34897317, 34897318,\n",
2579
+ " 34897319, 34897320, 34897321, 34897322, 34897323, 34897324,\n",
2580
+ " 34897325, 34897326, 34897327, 34897328, 34897329, 34897330,\n",
2581
+ " 34897331, 34897332, 34897333, 34897334, 34897335, 34897336,\n",
2582
+ " 34897337, 34897338, 34897339, 34897340, 34897341, 34897342,\n",
2583
+ " 34897343, 34897344, 34897345, 34897346, 34897347, 34897361,\n",
2584
+ " 34897362, 34897363, 34897364, 34897365, 34897366, 34897367,\n",
2585
+ " 34897368, 34897369, 34897370, 34897371, 34897372, 34897373,\n",
2586
+ " 34897374, 34897375, 34897376, 34897377, 34897378, 34897379,\n",
2587
+ " 34897380, 34897381, 34897382, 34897383, 34897384, 34897385,\n",
2588
+ " 34897386, 34897387, 34897388, 34897389, 34897390, 34897391,\n",
2589
+ " 34897392, 34897393, 34897394, 34897395, 34897396, 34897397,\n",
2590
+ " 34897398, 34897399, 34897400, 34897401, 34897402, 34897403,\n",
2591
+ " 34897404, 34897405, 34897406, 34897407, 34897408, 34897409,\n",
2592
+ " 34897410, 34897411, 34897412, 34897413, 34897414, 34897415,\n",
2593
+ " 34897416, 34897417, 34897418, 34897419, 34897420, 34897421,\n",
2594
+ " 34897422, 34897423, 34897424, 34897425, 34897426, 34897427,\n",
2595
+ " 34897428, 34897429, 34897430, 34897431, 34897432, 34897433,\n",
2596
+ " 34897434, 34897435, 34897436, 34897437, 34897438, 34897439,\n",
2597
+ " 34897440, 34897441, 34897442, 34897443, 34897444, 34897445,\n",
2598
+ " 34897446, 34897447, 34897448, 34897449, 34897450, 34897451,\n",
2599
+ " 34897452, 34897453, 34897454, 34897455, 34897456, 34897457,\n",
2600
+ " 34897458, 34897459, 34897460, 34897461, 34897462, 34897463,\n",
2601
+ " 34897464, 34897465, 34897466, 34897467, 34897468, 34897469,\n",
2602
+ " 34897470, 34897471, 34897472, 34897473, 34897474, 34897475,\n",
2603
+ " 34897476, 34897477, 34897478, 34897479, 34897480, 34897481,\n",
2604
+ " 34897482, 34897483, 34897484, 34897485, 34897486, 34897487,\n",
2605
+ " 34897488, 34897489, 34897490, 34897491, 153668532, 153668533,\n",
2606
+ " 153668534, 153668535, 153668536, 153668537, 153668538, 153668539,\n",
2607
+ " 153668540, 153668541, 153668542, 153668543, 153668544, 153668545,\n",
2608
+ " 153668546, 153668547, 153668548, 157177635, 157177636, 157177637,\n",
2609
+ " 157177638, 157177639, 157177640, 157177641, 157177642, 157177643,\n",
2610
+ " 157177644, 157177645, 157177646, 157177647, 157177648, 157177649,\n",
2611
+ " 157177650, 157177651, 157177652, 157177653, 157177654, 157177655,\n",
2612
+ " 157177656, 157177657, 157177658, 157177659, 157177660, 157177661,\n",
2613
+ " 157177662, 157177663, 157177664, 157177665, 157177666, 157177667,\n",
2614
+ " 157177668, 157177669, 157177670, 157177671, 157177672, 157177673,\n",
2615
+ " 157177674, 157177675, 157177676, 157177677, 157177678, 157177679,\n",
2616
+ " 157177680, 157177681, 157177682, 157177683, 157177684, 157177685,\n",
2617
+ " 157177686, 157177687, 157177688, 157177689, 157177690, 157177691,\n",
2618
+ " 160707138, 160707139, 160707140, 160707141, 160707142, 160707143,\n",
2619
+ " 160707144, 160707145, 160707146, 160707147, 160707148, 160707149,\n",
2620
+ " 160707150, 160707151, 160707152, 160707153, 160707154, 160707155,\n",
2621
+ " 160707156, 160707157, 160707158, 160707159, 160707160, 160707161,\n",
2622
+ " 160707162, 160707163, 160707164, 160707165, 160707166, 160707167,\n",
2623
+ " 160707168, 160707169, 160707170, 160707171, 160707172, 160707173,\n",
2624
+ " 160707174, 160707175, 160707176, 160707177, 160707178, 160707179,\n",
2625
+ " 160707180, 160707181, 160707182, 160707183, 160707184, 160707185,\n",
2626
+ " 160707186, 160707187, 160707188, 160707189, 160707190]),\n",
2627
+ " array([ 16, 35, 54, ..., 17421464, 17421465, 17421466]),\n",
2628
+ " array([17470532, 17470551, 17470570, ..., 52386000, 52386001, 52386002]),\n",
2629
+ " array([ 87352576, 87352595, 87352614, ..., 123733956, 123733974,\n",
2630
+ " 123733992]),\n",
2631
+ " array([125787710, 125787729, 125787748, ..., 160718825, 160718826,\n",
2632
+ " 160718827]),\n",
2633
+ " array([160728741, 160728760, 160728779, ..., 195638797, 195638798,\n",
2634
+ " 195638799]),\n",
2635
+ " array([195669772, 195669791, 195669810, ..., 230600094, 230600095,\n",
2636
+ " 230600096]),\n",
2637
+ " array([230610803, 230610822, 230610841, ..., 265535179, 265535180,\n",
2638
+ " 265535181]),\n",
2639
+ " array([265551834, 265551853, 265551872, ..., 299454858, 299454870,\n",
2640
+ " 299454882]),\n",
2641
+ " array([300492865, 300492884, 300492903, ..., 335000591, 335000595,\n",
2642
+ " 335000599]),\n",
2643
+ " array([335433896, 335433915, 335433934, ..., 380856761, 380856762,\n",
2644
+ " 380856763]),\n",
2645
+ " array([422797873, 422797893, 422797913, ..., 457709181, 457709182,\n",
2646
+ " 457709183]),\n",
2647
+ " array([457727504, 457727523, 457727542, ..., 471691347, 471691348,\n",
2648
+ " 471691349])]"
2649
+ ]
2650
+ },
2651
+ "execution_count": 77,
2652
+ "metadata": {},
2653
+ "output_type": "execute_result"
2654
+ }
2655
+ ],
2656
+ "source": [
2657
+ "non_nan_indices = []\n",
2658
+ "for da in aligned:\n",
2659
+ " non_nan_indices.append(np.flatnonzero(~np.isnan(da.values))) \n",
2660
+ "non_nan_indices"
2661
+ ]
2662
+ },
2663
+ {
2664
+ "cell_type": "code",
2665
+ "execution_count": 78,
2666
+ "metadata": {},
2667
+ "outputs": [
2668
+ {
2669
+ "name": "stdout",
2670
+ "output_type": "stream",
2671
+ "text": [
2672
+ "False\n",
2673
+ "False\n",
2674
+ "False\n",
2675
+ "False\n",
2676
+ "False\n",
2677
+ "False\n",
2678
+ "False\n",
2679
+ "False\n",
2680
+ "False\n",
2681
+ "False\n",
2682
+ "False\n",
2683
+ "False\n",
2684
+ "False\n",
2685
+ "False\n",
2686
+ "False\n",
2687
+ "False\n",
2688
+ "False\n",
2689
+ "False\n",
2690
+ "False\n",
2691
+ "False\n",
2692
+ "False\n",
2693
+ "False\n",
2694
+ "False\n",
2695
+ "False\n",
2696
+ "False\n",
2697
+ "False\n",
2698
+ "False\n",
2699
+ "False\n",
2700
+ "False\n",
2701
+ "False\n",
2702
+ "False\n",
2703
+ "False\n",
2704
+ "False\n",
2705
+ "False\n",
2706
+ "False\n",
2707
+ "False\n",
2708
+ "False\n",
2709
+ "False\n",
2710
+ "False\n",
2711
+ "False\n",
2712
+ "False\n",
2713
+ "False\n",
2714
+ "False\n",
2715
+ "False\n",
2716
+ "False\n",
2717
+ "False\n",
2718
+ "False\n",
2719
+ "False\n",
2720
+ "False\n",
2721
+ "False\n",
2722
+ "False\n",
2723
+ "False\n",
2724
+ "False\n",
2725
+ "False\n",
2726
+ "False\n",
2727
+ "False\n",
2728
+ "False\n",
2729
+ "False\n",
2730
+ "False\n",
2731
+ "False\n",
2732
+ "False\n",
2733
+ "False\n",
2734
+ "False\n",
2735
+ "False\n",
2736
+ "False\n",
2737
+ "False\n",
2738
+ "False\n",
2739
+ "False\n",
2740
+ "False\n",
2741
+ "False\n",
2742
+ "False\n",
2743
+ "False\n",
2744
+ "False\n",
2745
+ "False\n",
2746
+ "False\n",
2747
+ "False\n",
2748
+ "False\n",
2749
+ "False\n",
2750
+ "False\n",
2751
+ "False\n",
2752
+ "False\n",
2753
+ "False\n",
2754
+ "False\n",
2755
+ "False\n",
2756
+ "False\n",
2757
+ "False\n",
2758
+ "False\n",
2759
+ "False\n",
2760
+ "False\n",
2761
+ "False\n",
2762
+ "False\n",
2763
+ "False\n",
2764
+ "False\n",
2765
+ "False\n",
2766
+ "False\n",
2767
+ "False\n",
2768
+ "False\n",
2769
+ "False\n",
2770
+ "False\n",
2771
+ "False\n",
2772
+ "False\n",
2773
+ "False\n",
2774
+ "False\n",
2775
+ "False\n",
2776
+ "False\n",
2777
+ "False\n",
2778
+ "False\n",
2779
+ "False\n",
2780
+ "False\n",
2781
+ "False\n",
2782
+ "False\n",
2783
+ "False\n",
2784
+ "False\n",
2785
+ "False\n",
2786
+ "False\n",
2787
+ "False\n",
2788
+ "False\n",
2789
+ "False\n",
2790
+ "False\n",
2791
+ "False\n",
2792
+ "False\n",
2793
+ "False\n",
2794
+ "False\n",
2795
+ "False\n",
2796
+ "False\n",
2797
+ "False\n",
2798
+ "False\n",
2799
+ "False\n",
2800
+ "False\n",
2801
+ "False\n",
2802
+ "False\n",
2803
+ "False\n",
2804
+ "False\n",
2805
+ "False\n",
2806
+ "False\n",
2807
+ "False\n",
2808
+ "False\n",
2809
+ "False\n",
2810
+ "False\n",
2811
+ "False\n",
2812
+ "False\n",
2813
+ "False\n",
2814
+ "False\n",
2815
+ "False\n",
2816
+ "False\n",
2817
+ "False\n",
2818
+ "False\n",
2819
+ "False\n",
2820
+ "False\n",
2821
+ "False\n",
2822
+ "False\n",
2823
+ "False\n",
2824
+ "False\n",
2825
+ "False\n",
2826
+ "False\n",
2827
+ "False\n",
2828
+ "False\n",
2829
+ "False\n",
2830
+ "False\n",
2831
+ "False\n",
2832
+ "False\n",
2833
+ "False\n",
2834
+ "False\n",
2835
+ "False\n",
2836
+ "False\n",
2837
+ "False\n",
2838
+ "False\n",
2839
+ "False\n",
2840
+ "False\n",
2841
+ "False\n",
2842
+ "False\n",
2843
+ "False\n",
2844
+ "False\n",
2845
+ "False\n",
2846
+ "False\n",
2847
+ "False\n",
2848
+ "False\n",
2849
+ "False\n",
2850
+ "False\n",
2851
+ "False\n",
2852
+ "False\n",
2853
+ "False\n",
2854
+ "False\n",
2855
+ "False\n",
2856
+ "False\n",
2857
+ "False\n",
2858
+ "False\n",
2859
+ "False\n",
2860
+ "False\n",
2861
+ "False\n",
2862
+ "False\n",
2863
+ "False\n",
2864
+ "False\n",
2865
+ "False\n",
2866
+ "False\n",
2867
+ "False\n",
2868
+ "False\n",
2869
+ "False\n",
2870
+ "False\n",
2871
+ "False\n",
2872
+ "False\n",
2873
+ "False\n",
2874
+ "False\n",
2875
+ "False\n",
2876
+ "False\n",
2877
+ "False\n",
2878
+ "False\n",
2879
+ "False\n",
2880
+ "False\n",
2881
+ "False\n"
2882
+ ]
2883
+ }
2884
+ ],
2885
+ "source": [
2886
+ "# should all be False\n",
2887
+ "for a, b in itertools.combinations(non_nan_indices, 2):\n",
2888
+ " print(np.in1d(a, b).any())"
2889
+ ]
2890
+ },
2891
+ {
2892
+ "cell_type": "code",
2893
+ "execution_count": 79,
2894
+ "metadata": {},
2895
+ "outputs": [
2896
+ {
2897
+ "data": {
2898
+ "text/plain": [
2899
+ "array([[nan, nan, nan, ..., nan, nan, nan],\n",
2900
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2901
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2902
+ " ...,\n",
2903
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2904
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2905
+ " [nan, nan, nan, ..., nan, nan, nan]])"
2906
+ ]
2907
+ },
2908
+ "execution_count": 79,
2909
+ "metadata": {},
2910
+ "output_type": "execute_result"
2911
+ }
2912
+ ],
2913
+ "source": [
2914
+ "blank = np.full_like(aligned[0], np.nan)\n",
2915
+ "blank"
2916
+ ]
2917
+ },
2918
+ {
2919
+ "cell_type": "code",
2920
+ "execution_count": 80,
2921
+ "metadata": {},
2922
+ "outputs": [
2923
+ {
2924
+ "data": {
2925
+ "text/plain": [
2926
+ "<xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2927
+ "array([[nan, nan, nan, ..., nan, nan, nan],\n",
2928
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2929
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2930
+ " ...,\n",
2931
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2932
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2933
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2934
+ "Coordinates:\n",
2935
+ " * neuroid (neuroid) MultiIndex\n",
2936
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2937
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2938
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2939
+ " * presentation (presentation) MultiIndex\n",
2940
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2941
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2942
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2943
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ..."
2944
+ ]
2945
+ },
2946
+ "execution_count": 80,
2947
+ "metadata": {},
2948
+ "output_type": "execute_result"
2949
+ }
2950
+ ],
2951
+ "source": [
2952
+ "da_result = xr.DataArray(blank, coords=aligned[0].coords, dims=aligned[0].dims)\n",
2953
+ "da_result"
2954
+ ]
2955
+ },
2956
+ {
2957
+ "cell_type": "code",
2958
+ "execution_count": 81,
2959
+ "metadata": {},
2960
+ "outputs": [
2961
+ {
2962
+ "data": {
2963
+ "text/plain": [
2964
+ "<xarray.DataArray (neuroid: 135, presentation: 3494103)>\n",
2965
+ "array([[nan, nan, nan, ..., nan, nan, nan],\n",
2966
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2967
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2968
+ " ...,\n",
2969
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2970
+ " [nan, nan, nan, ..., nan, nan, nan],\n",
2971
+ " [nan, nan, nan, ..., nan, nan, nan]])\n",
2972
+ "Coordinates:\n",
2973
+ " * neuroid (neuroid) MultiIndex\n",
2974
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
2975
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
2976
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
2977
+ " * presentation (presentation) MultiIndex\n",
2978
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
2979
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
2980
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
2981
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ..."
2982
+ ]
2983
+ },
2984
+ "execution_count": 81,
2985
+ "metadata": {},
2986
+ "output_type": "execute_result"
2987
+ }
2988
+ ],
2989
+ "source": [
2990
+ "for da in aligned:\n",
2991
+ " da_result = da_result.combine_first(da)\n",
2992
+ "da_result"
2993
+ ]
2994
+ },
2995
+ {
2996
+ "cell_type": "code",
2997
+ "execution_count": 82,
2998
+ "metadata": {},
2999
+ "outputs": [
3000
+ {
3001
+ "data": {
3002
+ "text/plain": [
3003
+ "<xarray.DataArray (neuroid: 2, presentation: 74740)>\n",
3004
+ "array([[ 0, 0, 0, ..., 134, 134, 134],\n",
3005
+ " [ 16, 35, 54, ..., 3481545, 3481546, 3481547]])\n",
3006
+ "Coordinates:\n",
3007
+ " * neuroid (neuroid) MultiIndex\n",
3008
+ " - region (neuroid) object 'V2' 'V2' 'V2' 'V2' 'V2' 'V2' ...\n",
3009
+ " - animal (neuroid) object 'e' 'e' 'e' 'e' 'e' 'e' 'e' ...\n",
3010
+ " - neuroid_id (neuroid) object 'e0017' 'e0018' 'e0021' ...\n",
3011
+ " * presentation (presentation) MultiIndex\n",
3012
+ " - stimulusRepeats (presentation) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
3013
+ " - presentation_id (presentation) int64 0 0 0 0 0 0 0 0 0 0 0 0 0 ...\n",
3014
+ " - image_file_path_original (presentation) object 'v2-1/V2Data1/DGrat/stimuli/1b2a86f3f332f098b9eb2567fe8f04cd.jpg' ...\n",
3015
+ " - image_id (presentation) object '437fcb15ba2caa46c4a2aea77796c8316b8a98cf' ..."
3016
+ ]
3017
+ },
3018
+ "execution_count": 82,
3019
+ "metadata": {},
3020
+ "output_type": "execute_result"
3021
+ }
3022
+ ],
3023
+ "source": [
3024
+ "np.nonzero(~np.isnan(da_result))"
3025
+ ]
3026
+ },
3027
+ {
3028
+ "cell_type": "code",
3029
+ "execution_count": 84,
3030
+ "metadata": {},
3031
+ "outputs": [
3032
+ {
3033
+ "data": {
3034
+ "text/plain": [
3035
+ "74740"
3036
+ ]
3037
+ },
3038
+ "execution_count": 84,
3039
+ "metadata": {},
3040
+ "output_type": "execute_result"
3041
+ }
3042
+ ],
3043
+ "source": [
3044
+ "sum([len(n) for n in non_nan_indices])"
3045
+ ]
3046
+ },
3047
+ {
3048
+ "cell_type": "code",
3049
+ "execution_count": 85,
3050
+ "metadata": {},
3051
+ "outputs": [],
3052
+ "source": [
3053
+ "def levels_for_index(xr_data, index):\n",
3054
+ " return xr_data.indexes[index].names\n",
3055
+ "\n",
3056
+ "def all_index_levels(xr_data):\n",
3057
+ " nested = [levels_for_index(xr_data, index) for index in xr_data.indexes]\n",
3058
+ " return [x for inner in nested for x in inner]"
3059
+ ]
3060
+ },
3061
+ {
3062
+ "cell_type": "code",
3063
+ "execution_count": 86,
3064
+ "metadata": {},
3065
+ "outputs": [],
3066
+ "source": [
3067
+ "da_result.reset_index(all_index_levels(da_result), inplace=True)"
3068
+ ]
3069
+ },
3070
+ {
3071
+ "cell_type": "code",
3072
+ "execution_count": 87,
3073
+ "metadata": {},
3074
+ "outputs": [],
3075
+ "source": [
3076
+ "da_result.to_netcdf(\"/braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1/crcns_v2-1_neuronal.nc\")"
3077
+ ]
3078
+ },
3079
+ {
3080
+ "cell_type": "code",
3081
+ "execution_count": 88,
3082
+ "metadata": {},
3083
+ "outputs": [
3084
+ {
3085
+ "name": "stdout",
3086
+ "output_type": "stream",
3087
+ "text": [
3088
+ "total 4.2G\n",
3089
+ "drwxr-xr-x 23 jjpr dicarlo 4.0K Jun 5 15:52 .\n",
3090
+ "drwxr-xr-x 4 jjpr dicarlo 4.0K May 16 14:58 ..\n",
3091
+ "-rw-r--r-- 1 jjpr dicarlo 4.2G Jun 5 15:54 crcns_v2-1_neuronal.nc\n",
3092
+ "drwxr-xr-x 2 jjpr dicarlo 4.0K Sep 13 2010 functions\n",
3093
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data1\n",
3094
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data10\n",
3095
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data11\n",
3096
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data12\n",
3097
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data13\n",
3098
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data14\n",
3099
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data15\n",
3100
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data16\n",
3101
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data17\n",
3102
+ "drwxr-xr-x 3 jjpr dicarlo 4.0K Aug 25 2010 V2Data18\n",
3103
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data19\n",
3104
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data2\n",
3105
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data20\n",
3106
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data3\n",
3107
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data4\n",
3108
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data5\n",
3109
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data6\n",
3110
+ "drwxrwxrwx 4 jjpr dicarlo 4.0K Jun 17 2010 V2Data7\n",
3111
+ "drwxrwxrwx 3 jjpr dicarlo 4.0K Jun 17 2010 V2Data8\n",
3112
+ "drwxr-xr-x 3 jjpr dicarlo 4.0K Aug 25 2010 V2Data9\n"
3113
+ ]
3114
+ }
3115
+ ],
3116
+ "source": [
3117
+ "!ls -hal /braintree/data2/active/users/jjpr/mkgu_packaging/crcns/v2-1"
3118
+ ]
3119
+ },
3120
+ {
3121
+ "cell_type": "code",
3122
+ "execution_count": null,
3123
+ "metadata": {},
3124
+ "outputs": [],
3125
+ "source": []
3126
+ }
3127
+ ],
3128
+ "metadata": {
3129
+ "kernelspec": {
3130
+ "display_name": "mkgu_packaging",
3131
+ "language": "python",
3132
+ "name": "mkgu_packaging"
3133
+ },
3134
+ "language_info": {
3135
+ "codemirror_mode": {
3136
+ "name": "ipython",
3137
+ "version": 3
3138
+ },
3139
+ "file_extension": ".py",
3140
+ "mimetype": "text/x-python",
3141
+ "name": "python",
3142
+ "nbconvert_exporter": "python",
3143
+ "pygments_lexer": "ipython3",
3144
+ "version": "3.6.4"
3145
+ }
3146
+ },
3147
+ "nbformat": 4,
3148
+ "nbformat_minor": 2
3149
+ }