anuga 1.3.5__zip

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (870) hide show
  1. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__config__.py +21 -0
  2. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__config__.pyc +0 -0
  3. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__init__.py +363 -0
  4. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__init__.pyc +0 -0
  5. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__metadata__.py +6 -0
  6. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__metadata__.pyc +0 -0
  7. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/__init__.py +17 -0
  8. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/__init__.pyc +0 -0
  9. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/ermapper_grids.py +251 -0
  10. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/ermapper_grids.pyc +0 -0
  11. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/file_function.py +483 -0
  12. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/file_function.pyc +0 -0
  13. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/gauge.py +1080 -0
  14. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/gauge.pyc +0 -0
  15. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/general_mesh.py +865 -0
  16. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/general_mesh.pyc +0 -0
  17. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_boundary_conditions.py +862 -0
  18. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_boundary_conditions.pyc +0 -0
  19. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_domain.py +2274 -0
  20. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_domain.pyc +0 -0
  21. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory.py +1011 -0
  22. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory.pyc +0 -0
  23. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory_ext.pyd +0 -0
  24. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh.py +1488 -0
  25. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh.pyc +0 -0
  26. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh_ext.pyd +0 -0
  27. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_table_ext.pyd +0 -0
  28. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain.py +299 -0
  29. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain.pyc +0 -0
  30. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain_ext.pyd +0 -0
  31. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity.py +2162 -0
  32. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity.pyc +0 -0
  33. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity_ext.pyd +0 -0
  34. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/region.py +321 -0
  35. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/region.pyc +0 -0
  36. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/setup.py +48 -0
  37. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/setup.pyc +0 -0
  38. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tag_region.py +167 -0
  39. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tag_region.pyc +0 -0
  40. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/__init__.py +8 -0
  41. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/show_balanced_limiters.py +87 -0
  42. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_ermapper.py +189 -0
  43. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_gauge.py +539 -0
  44. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_general_mesh.py +517 -0
  45. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_generic_boundary_conditions.py +439 -0
  46. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_generic_domain.py +907 -0
  47. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_ghost.py +52 -0
  48. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_neighbour_mesh.py +1854 -0
  49. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_pmesh2domain.py +219 -0
  50. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_quantity.py +2859 -0
  51. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_region.py +99 -0
  52. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_tag_region.py +258 -0
  53. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_util.py +1632 -0
  54. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/util.py +928 -0
  55. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/util.pyc +0 -0
  56. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/__init__.py +12 -0
  57. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/__init__.pyc +0 -0
  58. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection.py +298 -0
  59. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection.pyc +0 -0
  60. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection_ext.pyd +0 -0
  61. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/setup.py +27 -0
  62. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/setup.pyc +0 -0
  63. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/tests/__init__.py +8 -0
  64. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/tests/test_advection.py +183 -0
  65. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/__init__.py +4 -0
  66. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/__init__.pyc +0 -0
  67. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/alpha_shape.py +654 -0
  68. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/alpha_shape.pyc +0 -0
  69. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/setup.py +21 -0
  70. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/setup.pyc +0 -0
  71. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/tests/__init__.py +8 -0
  72. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/tests/test_alpha_shape.py +402 -0
  73. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/anuga_exceptions.py +46 -0
  74. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/anuga_exceptions.pyc +0 -0
  75. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/__init__.py +18 -0
  76. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/__init__.pyc +0 -0
  77. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/caching.py +2531 -0
  78. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/caching.pyc +0 -0
  79. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/dummy_classes_for_testing.py +20 -0
  80. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/dummy_classes_for_testing.pyc +0 -0
  81. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/setup.py +21 -0
  82. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/setup.pyc +0 -0
  83. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/tests/__init__.py +8 -0
  84. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/tests/test_caching.py +895 -0
  85. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/compile_all.py +82 -0
  86. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/compile_all.pyc +0 -0
  87. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/config.py +273 -0
  88. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/config.pyc +0 -0
  89. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/__init__.py +6 -0
  90. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/__init__.pyc +0 -0
  91. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/geo_reference.py +478 -0
  92. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/geo_reference.pyc +0 -0
  93. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/lat_long_UTM_conversion.py +250 -0
  94. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/lat_long_UTM_conversion.pyc +0 -0
  95. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/point.py +128 -0
  96. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/point.pyc +0 -0
  97. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/redfearn.py +233 -0
  98. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/redfearn.pyc +0 -0
  99. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/setup.py +21 -0
  100. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/setup.pyc +0 -0
  101. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/__init__.py +8 -0
  102. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points.csv +11 -0
  103. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points.lic +17 -0
  104. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z53.csv +11 -0
  105. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z53.lic +17 -0
  106. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z54.csv +11 -0
  107. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z54.lic +17 -0
  108. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/redfearn.lic +17 -0
  109. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/redfearn.xls +0 -0
  110. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_geo_reference.py +716 -0
  111. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_lat_long_UTM_conversion.py +126 -0
  112. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_point.py +125 -0
  113. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_redfearn.py +508 -0
  114. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/__init__.py +9 -0
  115. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/__init__.pyc +0 -0
  116. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_class.py +1627 -0
  117. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_class.pyc +0 -0
  118. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_polygons.py +114 -0
  119. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_polygons.pyc +0 -0
  120. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_routines.py +362 -0
  121. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_routines.pyc +0 -0
  122. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/new_culvert_class.py +1630 -0
  123. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/new_culvert_class.pyc +0 -0
  124. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/setup.py +21 -0
  125. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/setup.pyc +0 -0
  126. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/__init__.py +8 -0
  127. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/culvert_polygons_example.py +38 -0
  128. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve.csv +20 -0
  129. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve.lic +17 -0
  130. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve2.csv +20 -0
  131. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve2.lic +17 -0
  132. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/unittests.lic +17 -0
  133. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/unittests.xls +0 -0
  134. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/run_culvert_flat_water_lev.py +173 -0
  135. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_class.py +812 -0
  136. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_polygons.py +84 -0
  137. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines.py +586 -0
  138. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_box_10pct.py +342 -0
  139. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_box_1pct.py +342 -0
  140. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_pipe_10pct.py +338 -0
  141. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_pipe_1pct.py +338 -0
  142. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_new_culvert_class.py +810 -0
  143. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/__init__.py +9 -0
  144. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/__init__.pyc +0 -0
  145. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/exposure.py +223 -0
  146. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/exposure.pyc +0 -0
  147. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/inundation_damage.py +467 -0
  148. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/inundation_damage.pyc +0 -0
  149. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/setup.py +21 -0
  150. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/setup.pyc +0 -0
  151. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/__init__.py +8 -0
  152. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/test_exposure.py +325 -0
  153. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/test_inundation_damage.py +610 -0
  154. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/error_api.py +130 -0
  155. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/error_api.pyc +0 -0
  156. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/extras.py +193 -0
  157. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/extras.pyc +0 -0
  158. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/__init__.py +54 -0
  159. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/__init__.pyc +0 -0
  160. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/csv_file.py +399 -0
  161. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/csv_file.pyc +0 -0
  162. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/mux.py +120 -0
  163. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/mux.pyc +0 -0
  164. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/netcdf.py +266 -0
  165. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/netcdf.pyc +0 -0
  166. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/pts.py +29 -0
  167. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/pts.pyc +0 -0
  168. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/setup.py +27 -0
  169. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/setup.pyc +0 -0
  170. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sts.py +293 -0
  171. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sts.pyc +0 -0
  172. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sww.py +1552 -0
  173. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sww.pyc +0 -0
  174. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/__init__.py +8 -0
  175. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_csv.py +413 -0
  176. Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_mux.py +1539 -0
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@@ -0,0 +1,1952 @@
1
+ #!/usr/bin/env python
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+
3
+ #TEST
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+
5
+ #import time, os
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+
7
+
8
+ import sys
9
+ import os
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+ import unittest
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+ import tempfile
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+ import csv
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+ import time
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+
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+ import numpy as num
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+ from math import sqrt
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+
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+ # ANUGA code imports
19
+ import anuga
20
+ from anuga.fit_interpolate.interpolate import Interpolate
21
+ from anuga.fit_interpolate.interpolate import Interpolation_function
22
+ from anuga.fit_interpolate.interpolate import interpolate
23
+ from anuga.fit_interpolate.interpolate import interpolate_sww2csv
24
+
25
+ from anuga.coordinate_transforms.geo_reference import Geo_reference
26
+ from anuga.utilities.numerical_tools import mean, NAN
27
+ from anuga.file.sww import SWW_file
28
+ from anuga.shallow_water.shallow_water_domain import Domain
29
+ from anuga.abstract_2d_finite_volumes.quantity import Quantity
30
+ from anuga.geospatial_data.geospatial_data import Geospatial_data
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+ from anuga.pmesh.mesh import Mesh
32
+ from anuga.file.netcdf import NetCDFFile
33
+
34
+ def distance(x, y):
35
+ return sqrt(num.sum((num.array(x)-num.array(y))**2))
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+
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+ def linear_function(point):
38
+ point = num.array(point)
39
+ return point[:,0]+point[:,1]
40
+
41
+
42
+ class Test_Interpolate(unittest.TestCase):
43
+
44
+ def setUp(self):
45
+
46
+ import time
47
+ from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
48
+
49
+
50
+ #Create basic mesh
51
+ points, vertices, boundary = rectangular(2, 2)
52
+
53
+ #Create shallow water domain
54
+ domain = Domain(points, vertices, boundary)
55
+ domain.default_order=2
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+
57
+
58
+ #Set some field values
59
+ domain.set_quantity('elevation', lambda x,y: -x)
60
+ domain.set_quantity('friction', 0.03)
61
+
62
+
63
+ ######################
64
+ # Boundary conditions
65
+ B = anuga.Transmissive_boundary(domain)
66
+ domain.set_boundary( {'left': B, 'right': B, 'top': B, 'bottom': B})
67
+
68
+
69
+ ######################
70
+ #Initial condition - with jumps
71
+
72
+ bed = domain.quantities['elevation'].vertex_values
73
+ stage = num.zeros(bed.shape, num.float)
74
+
75
+ h = 0.3
76
+ for i in range(stage.shape[0]):
77
+ if i % 2 == 0:
78
+ stage[i,:] = bed[i,:] + h
79
+ else:
80
+ stage[i,:] = bed[i,:]
81
+
82
+ domain.set_quantity('stage', stage)
83
+
84
+ domain.distribute_to_vertices_and_edges()
85
+
86
+
87
+ self.domain = domain
88
+
89
+ C = domain.get_vertex_coordinates()
90
+ self.X = C[:,0:6:2].copy()
91
+ self.Y = C[:,1:6:2].copy()
92
+
93
+ self.F = bed
94
+
95
+
96
+
97
+ def tearDown(self):
98
+ pass
99
+
100
+ def test_datapoint_at_centroid(self):
101
+ a = [0.0, 0.0]
102
+ b = [0.0, 2.0]
103
+ c = [2.0,0.0]
104
+ points = [a, b, c]
105
+ vertices = [ [1,0,2] ] #bac
106
+
107
+ data = [ [2.0/3, 2.0/3] ] #Use centroid as one data point
108
+
109
+ interp = Interpolate(points, vertices)
110
+ A, _, _, _ = interp._build_interpolation_matrix_A(data)
111
+ assert num.allclose(A.todense(), [[1./3, 1./3, 1./3]])
112
+
113
+ def test_datapoint_in_hole(self):
114
+ # create 3 right-angled triangles arranged in a bigger triangle
115
+ a = [0.0, 0.0] #0
116
+ b = [0.0, 2.0] #1
117
+ c = [2.0,0.0] #2
118
+ d = [0.0,4.0] #3
119
+ e = [2.0,2.0] #4
120
+ f = [4.0,0.0] #5
121
+ points = [a, b, c, d, e, f]
122
+ vertices = [ [1,0,2], [3,1,4], [4,2,5] ] #bac dbe ecf
123
+
124
+ point_in_hole = [1.5, 1.5] # a point in the hole
125
+ data = [ [20, 20], [0.3, 0.3], point_in_hole, [2.5, 0.3], [30, 30] ] #some points inside and outside the hole
126
+
127
+ # any function for the vertices, we don't care about the result
128
+ f = num.array([linear_function(points), 2*linear_function(points)])
129
+ f = num.transpose(f)
130
+
131
+ interp = Interpolate(points, vertices)
132
+ interp.interpolate(f, data)
133
+
134
+ assert not set(interp.inside_poly_indices).intersection(set(interp.outside_poly_indices)), \
135
+ 'Some points are in both lists!'
136
+ assert len(interp.inside_poly_indices) == 2
137
+ assert len(interp.outside_poly_indices) == 3
138
+
139
+ interp.outside_poly_indices.sort()
140
+ assert interp.outside_poly_indices[1] == 2, \
141
+ 'third outside point should be inside the hole!'
142
+
143
+ def test_simple_interpolation_example(self):
144
+
145
+ from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
146
+
147
+ # Create basic mesh
148
+ points, vertices, boundary = rectangular(1, 3)
149
+
150
+ # Create shallow water domain
151
+ domain = Domain(points, vertices, boundary)
152
+
153
+ #----------------
154
+ #Constant values
155
+ #----------------
156
+ quantity = Quantity(domain,[[0,0,0],[1,1,1],[2,2,2],[3,3,3],
157
+ [4,4,4],[5,5,5]])
158
+
159
+
160
+ x, y, vertex_values, triangles = quantity.get_vertex_values(xy=True, smooth=False)
161
+ vertex_coordinates = num.concatenate( (x[:, num.newaxis], y[:, num.newaxis]), axis=1 )
162
+ # FIXME: This concat should roll into get_vertex_values
163
+
164
+
165
+ # Get interpolated values at centroids
166
+ interpolation_points = domain.get_centroid_coordinates()
167
+ answer = quantity.get_values(location='centroids')
168
+
169
+ I = Interpolate(vertex_coordinates, triangles)
170
+ result = I.interpolate(vertex_values, interpolation_points)
171
+ assert num.allclose(result, answer)
172
+
173
+
174
+ #----------------
175
+ # Variable values
176
+ #----------------
177
+ quantity = Quantity(domain,[[0,1,2],[3,1,7],[2,1,2],[3,3,7],
178
+ [1,4,-9],[2,5,0]])
179
+
180
+ x, y, vertex_values, triangles = quantity.get_vertex_values(xy=True, smooth=False)
181
+ vertex_coordinates = num.concatenate( (x[:, num.newaxis], y[:, num.newaxis]), axis=1 )
182
+ # FIXME: This concat should roll into get_vertex_values
183
+
184
+
185
+ # Get interpolated values at centroids
186
+ interpolation_points = domain.get_centroid_coordinates()
187
+ answer = quantity.get_values(location='centroids')
188
+
189
+ I = Interpolate(vertex_coordinates, triangles)
190
+ result = I.interpolate(vertex_values, interpolation_points)
191
+ assert num.allclose(result, answer)
192
+
193
+
194
+ def test_simple_interpolation_example_using_direct_interface(self):
195
+
196
+ from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
197
+
198
+ # Create basic mesh
199
+ points, vertices, boundary = rectangular(1, 3)
200
+
201
+ # Create shallow water domain
202
+ domain = Domain(points, vertices, boundary)
203
+
204
+ #----------------
205
+ # Constant values
206
+ #----------------
207
+ quantity = Quantity(domain,[[0,0,0],[1,1,1],[2,2,2],[3,3,3],
208
+ [4,4,4],[5,5,5]])
209
+
210
+
211
+ x, y, vertex_values, triangles = quantity.get_vertex_values(xy=True, smooth=False)
212
+ vertex_coordinates = num.concatenate( (x[:, num.newaxis], y[:, num.newaxis]), axis=1 )
213
+ # FIXME: This concat should roll into get_vertex_values
214
+
215
+
216
+ # Get interpolated values at centroids
217
+ interpolation_points = domain.get_centroid_coordinates()
218
+ answer = quantity.get_values(location='centroids')
219
+
220
+ result = interpolate(vertex_coordinates, triangles, vertex_values, interpolation_points)
221
+ assert num.allclose(result, answer)
222
+
223
+
224
+ #----------------
225
+ # Variable values
226
+ #----------------
227
+ quantity = Quantity(domain,[[0,1,2],[3,1,7],[2,1,2],[3,3,7],
228
+ [1,4,-9],[2,5,0]])
229
+
230
+ x, y, vertex_values, triangles = quantity.get_vertex_values(xy=True, smooth=False)
231
+ vertex_coordinates = num.concatenate( (x[:, num.newaxis], y[:, num.newaxis]), axis=1 )
232
+ # FIXME: This concat should roll into get_vertex_values
233
+
234
+
235
+ # Get interpolated values at centroids
236
+ interpolation_points = domain.get_centroid_coordinates()
237
+ answer = quantity.get_values(location='centroids')
238
+
239
+ result = interpolate(vertex_coordinates, triangles,
240
+ vertex_values, interpolation_points)
241
+ assert num.allclose(result, answer)
242
+
243
+
244
+ def test_simple_interpolation_example_using_direct_interface_and_caching(self):
245
+
246
+ from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
247
+
248
+ # Create basic mesh
249
+ points, vertices, boundary = rectangular(1, 3)
250
+
251
+ # Create shallow water domain
252
+ domain = Domain(points, vertices, boundary)
253
+
254
+ #----------------
255
+ # First call
256
+ #----------------
257
+ quantity = Quantity(domain,[[0,1,2],[3,1,7],[2,1,2],[3,3,7],
258
+ [1,4,-9],[2,5,0]])
259
+
260
+ x, y, vertex_values, triangles = quantity.get_vertex_values(xy=True, smooth=False)
261
+ vertex_coordinates = num.concatenate( (x[:, num.newaxis], y[:, num.newaxis]), axis=1 )
262
+ # FIXME: This concat should roll into get_vertex_values
263
+
264
+ # Get interpolated values at centroids
265
+ interpolation_points = domain.get_centroid_coordinates()
266
+ answer = quantity.get_values(location='centroids')
267
+ result = interpolate(vertex_coordinates, triangles,
268
+ vertex_values, interpolation_points,
269
+ use_cache=True,
270
+ verbose=False)
271
+ assert num.allclose(result, answer)
272
+
273
+ # Second call using the cache
274
+ result = interpolate(vertex_coordinates, triangles,
275
+ vertex_values, interpolation_points,
276
+ use_cache=True,
277
+ verbose=False)
278
+ assert num.allclose(result, answer)
279
+
280
+
281
+ def test_quad_tree(self):
282
+ p0 = [-10.0, -10.0]
283
+ p1 = [20.0, -10.0]
284
+ p2 = [-10.0, 20.0]
285
+ p3 = [10.0, 50.0]
286
+ p4 = [30.0, 30.0]
287
+ p5 = [50.0, 10.0]
288
+ p6 = [40.0, 60.0]
289
+ p7 = [60.0, 40.0]
290
+ p8 = [-66.0, 20.0]
291
+ p9 = [10.0, -66.0]
292
+
293
+ points = [p0, p1, p2, p3, p4, p5, p6, p7, p8, p9]
294
+ triangles = [ [0, 1, 2],
295
+ [3, 2, 4],
296
+ [4, 2, 1],
297
+ [4, 1, 5],
298
+ [3, 4, 6],
299
+ [6, 4, 7],
300
+ [7, 4, 5],
301
+ [8, 0, 2],
302
+ [0, 9, 1]]
303
+
304
+ data = [ [4,4] ]
305
+ interp = Interpolate(points, triangles)
306
+ #print "PDSG - interp.get_A()", interp.get_A()
307
+ answer = [ [ 0.06666667, 0.46666667, 0.46666667, 0.,
308
+ 0., 0. , 0., 0., 0., 0.]]
309
+
310
+ A,_,_,_ = interp._build_interpolation_matrix_A(data)
311
+ assert num.allclose(A.todense(), answer)
312
+
313
+ #interp.set_point_coordinates([[-30, -30]]) #point outside of mesh
314
+ #print "PDSG - interp.get_A()", interp.get_A()
315
+ data = [[-30, -30]]
316
+ answer = [ [ 0.0, 0.0, 0.0, 0.,
317
+ 0., 0. , 0., 0., 0., 0.]]
318
+
319
+ A,_,_,_ = interp._build_interpolation_matrix_A(data)
320
+ assert num.allclose(A.todense(), answer)
321
+
322
+
323
+ #point outside of quad tree root cell
324
+ #interp.set_point_coordinates([[-70, -70]])
325
+ #print "PDSG - interp.get_A()", interp.get_A()
326
+ data = [[-70, -70]]
327
+ answer = [ [ 0.0, 0.0, 0.0, 0.,
328
+ 0., 0. , 0., 0., 0., 0.]]
329
+
330
+ A,_,_,_ = interp._build_interpolation_matrix_A(data)
331
+ assert num.allclose(A.todense(), answer)
332
+
333
+
334
+ def test_datapoints_at_vertices(self):
335
+ #Test that data points coinciding with vertices yield a diagonal matrix
336
+
337
+
338
+ a = [0.0, 0.0]
339
+ b = [0.0, 2.0]
340
+ c = [2.0,0.0]
341
+ points = [a, b, c]
342
+ vertices = [ [1,0,2] ] #bac
343
+
344
+ data = points #Use data at vertices
345
+
346
+ interp = Interpolate(points, vertices)
347
+ answer = [[1., 0., 0.],
348
+ [0., 1., 0.],
349
+ [0., 0., 1.]]
350
+
351
+ A,_,_,_ = interp._build_interpolation_matrix_A(data)
352
+ assert num.allclose(A.todense(), answer)
353
+
354
+
355
+ def test_datapoints_on_edge_midpoints(self):
356
+ #Try datapoints midway on edges -
357
+ #each point should affect two matrix entries equally
358
+
359
+
360
+ a = [0.0, 0.0]
361
+ b = [0.0, 2.0]
362
+ c = [2.0,0.0]
363
+ points = [a, b, c]
364
+ vertices = [ [1,0,2] ] #bac
365
+
366
+ data = [ [0., 1.], [1., 0.], [1., 1.] ]
367
+ answer = [[0.5, 0.5, 0.0], #Affects vertex 1 and 0
368
+ [0.5, 0.0, 0.5], #Affects vertex 0 and 2
369
+ [0.0, 0.5, 0.5]]
370
+ interp = Interpolate(points, vertices)
371
+
372
+ A,_,_,_ = interp._build_interpolation_matrix_A(data)
373
+ assert num.allclose(A.todense(), answer)
374
+
375
+ def test_datapoints_on_edges(self):
376
+ #Try datapoints on edges -
377
+ #each point should affect two matrix entries in proportion
378
+
379
+
380
+ a = [0.0, 0.0]
381
+ b = [0.0, 2.0]
382
+ c = [2.0,0.0]
383
+ points = [a, b, c]
384
+ vertices = [ [1,0,2] ] #bac
385
+
386
+ data = [ [0., 1.5], [1.5, 0.], [1.5, 0.5] ]
387
+ answer = [[0.25, 0.75, 0.0], #Affects vertex 1 and 0
388
+ [0.25, 0.0, 0.75], #Affects vertex 0 and 2
389
+ [0.0, 0.25, 0.75]]
390
+
391
+ interp = Interpolate(points, vertices)
392
+
393
+ A,_,_,_ = interp._build_interpolation_matrix_A(data)
394
+ assert num.allclose(A.todense(), answer)
395
+
396
+
397
+ def test_arbitrary_datapoints(self):
398
+ #Try arbitrary datapoints
399
+
400
+
401
+ a = [0.0, 0.0]
402
+ b = [0.0, 2.0]
403
+ c = [2.0,0.0]
404
+ points = [a, b, c]
405
+ vertices = [ [1,0,2] ] #bac
406
+
407
+ data = [ [0.2, 1.5], [0.123, 1.768], [1.43, 0.44] ]
408
+
409
+ interp = Interpolate(points, vertices)
410
+ #print "interp.get_A()", interp.get_A()
411
+
412
+ A,_,_,_ = interp._build_interpolation_matrix_A(data)
413
+ results = A.todense()
414
+ assert num.allclose(num.sum(results, axis=1), 1.0)
415
+
416
+
417
+ def test_arbitrary_datapoints_return_centroids(self):
418
+ #Try arbitrary datapoints, making sure they return
419
+ #an interpolation matrix for the intersected triangle's
420
+ #centroid.
421
+
422
+ a = [1.0, 0.0]
423
+ b = [0.0, 3.0]
424
+ c = [4.0,0.0]
425
+ points = [a, b, c]
426
+ vertices = [ [1,0,2] ]
427
+
428
+ data = [ [1.2, 1.5], [1.123, 1.768], [2.43, 0.44] ]
429
+
430
+ interp = Interpolate(points, vertices)
431
+
432
+ third = [1.0/3.0, 1.0/3.0, 1.0/3.0]
433
+ answer = [third, third, third]
434
+
435
+ A,_,_,_ = interp._build_interpolation_matrix_A(data, output_centroids=True)
436
+ results = A.todense()
437
+ assert num.allclose(results, answer)
438
+
439
+
440
+ def test_arbitrary_datapoints_some_outside(self):
441
+ #Try arbitrary datapoints one outside the triangle.
442
+ #That one should be ignored
443
+
444
+
445
+ a = [0.0, 0.0]
446
+ b = [0.0, 2.0]
447
+ c = [2.0,0.0]
448
+ points = [a, b, c]
449
+ vertices = [ [1,0,2] ] #bac
450
+
451
+ data = [ [0.2, 1.5], [0.123, 1.768], [1.43, 0.44], [5.0, 7.0]]
452
+
453
+ interp = Interpolate(points, vertices)
454
+
455
+ A,_,_,_ = interp._build_interpolation_matrix_A(data)
456
+ results = A.todense()
457
+ assert num.allclose(num.sum(results, axis=1), [1,1,1,0])
458
+
459
+
460
+
461
+ # this causes a memory error in scipy.sparse
462
+ def test_more_triangles(self):
463
+
464
+ a = [-1.0, 0.0]
465
+ b = [3.0, 4.0]
466
+ c = [4.0,1.0]
467
+ d = [-3.0, 2.0] #3
468
+ e = [-1.0,-2.0]
469
+ f = [1.0, -2.0] #5
470
+
471
+ points = [a, b, c, d,e,f]
472
+ triangles = [[0,1,3],[1,0,2],[0,4,5], [0,5,2]] #abd bac aef afc
473
+
474
+ #Data points
475
+ data = [ [-3., 2.0], [-2, 1], [0.0, 1], [0, 3], [2, 3], [-1.0/3,-4./3] ]
476
+ interp = Interpolate(points, triangles)
477
+
478
+ answer = [[0.0, 0.0, 0.0, 1.0, 0.0, 0.0], #Affects point d
479
+ [0.5, 0.0, 0.0, 0.5, 0.0, 0.0], #Affects points a and d
480
+ [0.75, 0.25, 0.0, 0.0, 0.0, 0.0], #Affects points a and b
481
+ [0.0, 0.5, 0.0, 0.5, 0.0, 0.0], #Affects points a and d
482
+ [0.25, 0.75, 0.0, 0.0, 0.0, 0.0], #Affects points a and b
483
+ [1./3, 0.0, 0.0, 0.0, 1./3, 1./3]] #Affects points a, e and f
484
+
485
+
486
+ A,_,_,_ = interp._build_interpolation_matrix_A(data)
487
+ A = A.todense()
488
+ for i in range(A.shape[0]):
489
+ for j in range(A.shape[1]):
490
+ if not num.allclose(A[i,j], answer[i][j]):
491
+ print i,j,':',A[i,j], answer[i][j]
492
+
493
+
494
+ #results = interp._build_interpolation_matrix_A(data).todense()
495
+
496
+ assert num.allclose(A, answer)
497
+
498
+ def test_geo_ref(self):
499
+ v0 = [0.0, 0.0]
500
+ v1 = [0.0, 5.0]
501
+ v2 = [5.0, 0.0]
502
+
503
+ vertices_absolute = [v0, v1, v2]
504
+ triangles = [ [1,0,2] ] #bac
505
+
506
+ geo = Geo_reference(57,100, 500)
507
+
508
+ vertices = geo.change_points_geo_ref(vertices_absolute)
509
+ #print "vertices",vertices
510
+
511
+ d0 = [1.0, 1.0]
512
+ d1 = [1.0, 2.0]
513
+ d2 = [3.0, 1.0]
514
+ point_coords = [ d0, d1, d2]
515
+
516
+ interp = Interpolate(vertices, triangles, mesh_origin=geo)
517
+ f = linear_function(vertices_absolute)
518
+ z = interp.interpolate(f, point_coords)
519
+ answer = linear_function(point_coords)
520
+
521
+ #print "z",z
522
+ #print "answer",answer
523
+ assert num.allclose(z, answer)
524
+
525
+
526
+ z = interp.interpolate(f, point_coords, start_blocking_len = 2)
527
+ answer = linear_function(point_coords)
528
+
529
+ #print "z",z
530
+ #print "answer",answer
531
+ assert num.allclose(z, answer)
532
+
533
+
534
+ def test_sigma_epsilon(self):
535
+ """
536
+ def test_sigma_epsilon(self):
537
+ Testing ticket 168. I could not reduce the bug to this small
538
+ test though.
539
+
540
+ """
541
+ v0 = [22031.25, 59687.5]
542
+ v1 = [22500., 60000.]
543
+ v2 = [22350.31640625, 59716.71484375]
544
+
545
+ vertices = [v0, v1, v2]
546
+ triangles = [ [1,0,2] ] #bac
547
+
548
+
549
+ point_coords = [[22050., 59700.]]
550
+
551
+ interp = Interpolate(vertices, triangles)
552
+ f = linear_function(vertices)
553
+ z = interp.interpolate(f, point_coords)
554
+ answer = linear_function(point_coords)
555
+
556
+ #print "z",z
557
+ #print "answer",answer
558
+ assert num.allclose(z, answer)
559
+
560
+
561
+ z = interp.interpolate(f, point_coords, start_blocking_len = 2)
562
+ answer = linear_function(point_coords)
563
+
564
+ #print "z",z
565
+ #print "answer",answer
566
+ assert num.allclose(z, answer)
567
+
568
+
569
+ def test_Geospatial_verts(self):
570
+ v0 = [0.0, 0.0]
571
+ v1 = [0.0, 5.0]
572
+ v2 = [5.0, 0.0]
573
+
574
+ vertices_absolute = [v0, v1, v2]
575
+ triangles = [ [1,0,2] ] #bac
576
+
577
+ geo = Geo_reference(57,100, 500)
578
+ vertices = geo.change_points_geo_ref(vertices_absolute)
579
+ geopoints = Geospatial_data(vertices,geo_reference = geo)
580
+ #print "vertices",vertices
581
+
582
+ d0 = [1.0, 1.0]
583
+ d1 = [1.0, 2.0]
584
+ d2 = [3.0, 1.0]
585
+ point_coords = [ d0, d1, d2]
586
+
587
+ interp = Interpolate(geopoints, triangles)
588
+ f = linear_function(vertices_absolute)
589
+ z = interp.interpolate(f, point_coords)
590
+ answer = linear_function(point_coords)
591
+
592
+ #print "z",z
593
+ #print "answer",answer
594
+ assert num.allclose(z, answer)
595
+
596
+ z = interp.interpolate(f, point_coords, start_blocking_len = 2)
597
+ answer = linear_function(point_coords)
598
+
599
+ #print "z",z
600
+ #print "answer",answer
601
+ assert num.allclose(z, answer)
602
+
603
+ def test_interpolate_attributes_to_points(self):
604
+ v0 = [0.0, 0.0]
605
+ v1 = [0.0, 5.0]
606
+ v2 = [5.0, 0.0]
607
+
608
+ vertices = [v0, v1, v2]
609
+ triangles = [ [1,0,2] ] #bac
610
+
611
+ d0 = [1.0, 1.0]
612
+ d1 = [1.0, 2.0]
613
+ d2 = [3.0, 1.0]
614
+ point_coords = [ d0, d1, d2]
615
+
616
+ interp = Interpolate(vertices, triangles)
617
+ f = linear_function(vertices)
618
+ z = interp.interpolate(f, point_coords)
619
+ answer = linear_function(point_coords)
620
+
621
+ #print "z",z
622
+ #print "answer",answer
623
+ assert num.allclose(z, answer)
624
+
625
+
626
+ z = interp.interpolate(f, point_coords, start_blocking_len = 2)
627
+ answer = linear_function(point_coords)
628
+
629
+ #print "z",z
630
+ #print "answer",answer
631
+ assert num.allclose(z, answer)
632
+
633
+ def test_interpolate_attributes_to_pointsII(self):
634
+ a = [-1.0, 0.0]
635
+ b = [3.0, 4.0]
636
+ c = [4.0, 1.0]
637
+ d = [-3.0, 2.0] #3
638
+ e = [-1.0, -2.0]
639
+ f = [1.0, -2.0] #5
640
+
641
+ vertices = [a, b, c, d,e,f]
642
+ triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
643
+
644
+
645
+ point_coords = [[-2.0, 2.0],
646
+ [-1.0, 1.0],
647
+ [0.0, 2.0],
648
+ [1.0, 1.0],
649
+ [2.0, 1.0],
650
+ [0.0, 0.0],
651
+ [1.0, 0.0],
652
+ [0.0, -1.0],
653
+ [-0.2, -0.5],
654
+ [-0.9, -1.5],
655
+ [0.5, -1.9],
656
+ [3.0, 1.0]]
657
+
658
+ interp = Interpolate(vertices, triangles)
659
+ f = linear_function(vertices)
660
+ z = interp.interpolate(f, point_coords)
661
+ answer = linear_function(point_coords)
662
+ #print "z",z
663
+ #print "answer",answer
664
+ assert num.allclose(z, answer)
665
+
666
+ z = interp.interpolate(f, point_coords, start_blocking_len = 2)
667
+ answer = linear_function(point_coords)
668
+
669
+ #print "z",z
670
+ #print "answer",answer
671
+ assert num.allclose(z, answer)
672
+
673
+ def test_interpolate_attributes_to_pointsIII(self):
674
+ #Test linear interpolation of known values at vertices to
675
+ #new points inside a triangle
676
+
677
+ a = [0.0, 0.0]
678
+ b = [0.0, 5.0]
679
+ c = [5.0, 0.0]
680
+ d = [5.0, 5.0]
681
+
682
+ vertices = [a, b, c, d]
683
+ triangles = [ [1,0,2], [2,3,1] ] #bac, cdb
684
+
685
+ #Points within triangle 1
686
+ d0 = [1.0, 1.0]
687
+ d1 = [1.0, 2.0]
688
+ d2 = [3.0, 1.0]
689
+
690
+ #Point within triangle 2
691
+ d3 = [4.0, 3.0]
692
+
693
+ #Points on common edge
694
+ d4 = [2.5, 2.5]
695
+ d5 = [4.0, 1.0]
696
+
697
+ #Point on common vertex
698
+ d6 = [0., 5.]
699
+
700
+ point_coords = [d0, d1, d2, d3, d4, d5, d6]
701
+
702
+ interp = Interpolate(vertices, triangles)
703
+
704
+ #Known values at vertices
705
+ #Functions are x+y, x+2y, 2x+y, x-y-5
706
+ f = [ [0., 0., 0., -5.], # (0,0)
707
+ [5., 10., 5., -10.], # (0,5)
708
+ [5., 5., 10.0, 0.], # (5,0)
709
+ [10., 15., 15., -5.]] # (5,5)
710
+
711
+ z = interp.interpolate(f, point_coords)
712
+ answer = [ [2., 3., 3., -5.], # (1,1)
713
+ [3., 5., 4., -6.], # (1,2)
714
+ [4., 5., 7., -3.], # (3,1)
715
+ [7., 10., 11., -4.], # (4,3)
716
+ [5., 7.5, 7.5, -5.], # (2.5, 2.5)
717
+ [5., 6., 9., -2.], # (4,1)
718
+ [5., 10., 5., -10.]] # (0,5)
719
+
720
+ #print "***********"
721
+ #print "z",z
722
+ #print "answer",answer
723
+ #print "***********"
724
+
725
+ assert num.allclose(z, answer)
726
+
727
+
728
+ z = interp.interpolate(f, point_coords, start_blocking_len = 2)
729
+
730
+ #print "z",z
731
+ #print "answer",answer
732
+ assert num.allclose(z, answer)
733
+
734
+ def test_interpolate_point_outside_of_mesh(self):
735
+ #Test linear interpolation of known values at vertices to
736
+ #new points inside a triangle
737
+
738
+ a = [0.0, 0.0]
739
+ b = [0.0, 5.0]
740
+ c = [5.0, 0.0]
741
+ d = [5.0, 5.0]
742
+
743
+ vertices = [a, b, c, d]
744
+ triangles = [ [1,0,2], [2,3,1] ] #bac, cdb
745
+
746
+ #Far away point
747
+ d7 = [-1., -1.]
748
+
749
+ point_coords = [ d7]
750
+ interp = Interpolate(vertices, triangles)
751
+
752
+ #Known values at vertices
753
+ #Functions are x+y, x+2y, 2x+y, x-y-5
754
+ f = [ [0., 0., 0., -5.], # (0,0)
755
+ [5., 10., 5., -10.], # (0,5)
756
+ [5., 5., 10.0, 0.], # (5,0)
757
+ [10., 15., 15., -5.]] # (5,5)
758
+
759
+ z = interp.interpolate(f, point_coords) #, verbose=True)
760
+ answer = num.array([ [NAN, NAN, NAN, NAN]]) # (-1,-1)
761
+
762
+ #print "***********"
763
+ #print "z",z
764
+ #print "answer",answer
765
+ #print "***********"
766
+
767
+ #Should an error message be returned if points are outside
768
+ # of the mesh?
769
+ # A warning message is printed, if verbose is on.
770
+
771
+ for i in range(4):
772
+ self.assertTrue( z[0,i] == answer[0,i], 'Fail!')
773
+
774
+ z = interp.interpolate(f, point_coords, start_blocking_len = 2)
775
+
776
+ #print "z",z
777
+ #print "answer",answer
778
+
779
+ for i in range(4):
780
+ self.assertTrue( z[0,i] == answer[0,i], 'Fail!')
781
+
782
+
783
+ def test_interpolate_attributes_to_pointsIV(self):
784
+ a = [-1.0, 0.0]
785
+ b = [3.0, 4.0]
786
+ c = [4.0, 1.0]
787
+ d = [-3.0, 2.0] #3
788
+ e = [-1.0, -2.0]
789
+ f = [1.0, -2.0] #5
790
+
791
+ vertices = [a, b, c, d,e,f]
792
+ triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
793
+
794
+
795
+ point_coords = [[-2.0, 2.0],
796
+ [-1.0, 1.0],
797
+ [0.0, 2.0],
798
+ [1.0, 1.0],
799
+ [2.0, 1.0],
800
+ [0.0, 0.0],
801
+ [1.0, 0.0],
802
+ [0.0, -1.0],
803
+ [-0.2, -0.5],
804
+ [-0.9, -1.5],
805
+ [0.5, -1.9],
806
+ [3.0, 1.0]]
807
+
808
+ interp = Interpolate(vertices, triangles)
809
+ f = num.array([linear_function(vertices),2*linear_function(vertices)])
810
+ f = num.transpose(f)
811
+ #print "f",f
812
+ z = interp.interpolate(f, point_coords)
813
+ answer = [linear_function(point_coords),
814
+ 2*linear_function(point_coords) ]
815
+ answer = num.transpose(answer)
816
+ #print "z",z
817
+ #print "answer",answer
818
+ assert num.allclose(z, answer)
819
+
820
+ z = interp.interpolate(f, point_coords, start_blocking_len = 2)
821
+
822
+ #print "z",z
823
+ #print "answer",answer
824
+ assert num.allclose(z, answer)
825
+
826
+ def test_interpolate_blocking(self):
827
+ a = [-1.0, 0.0]
828
+ b = [3.0, 4.0]
829
+ c = [4.0, 1.0]
830
+ d = [-3.0, 2.0] #3
831
+ e = [-1.0, -2.0]
832
+ f = [1.0, -2.0] #5
833
+
834
+ vertices = [a, b, c, d,e,f]
835
+ triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
836
+
837
+
838
+ point_coords = [[-2.0, 2.0],
839
+ [-1.0, 1.0],
840
+ [0.0, 2.0],
841
+ [1.0, 1.0],
842
+ [2.0, 1.0],
843
+ [0.0, 0.0],
844
+ [1.0, 0.0],
845
+ [0.0, -1.0],
846
+ [-0.2, -0.5],
847
+ [-0.9, -1.5],
848
+ [0.5, -1.9],
849
+ [3.0, 1.0]]
850
+
851
+ interp = Interpolate(vertices, triangles)
852
+ f = num.array([linear_function(vertices),2*linear_function(vertices)])
853
+ f = num.transpose(f)
854
+ #print "f",f
855
+ for blocking_max in range(len(point_coords)+2):
856
+ #if True:
857
+ # blocking_max = 5
858
+ z = interp.interpolate(f, point_coords,
859
+ start_blocking_len=blocking_max)
860
+ answer = [linear_function(point_coords),
861
+ 2*linear_function(point_coords) ]
862
+ answer = num.transpose(answer)
863
+ #print "z",z
864
+ #print "answer",answer
865
+ assert num.allclose(z, answer)
866
+
867
+ f = num.array([linear_function(vertices),2*linear_function(vertices),
868
+ 2*linear_function(vertices) - 100])
869
+ f = num.transpose(f)
870
+ #print "f",f
871
+ for blocking_max in range(len(point_coords)+2):
872
+ #if True:
873
+ # blocking_max = 5
874
+ z = interp.interpolate(f, point_coords,
875
+ start_blocking_len=blocking_max)
876
+ answer = num.array([linear_function(point_coords),
877
+ 2*linear_function(point_coords) ,
878
+ 2*linear_function(point_coords)-100])
879
+ z = num.transpose(z)
880
+ #print "z",z
881
+ #print "answer",answer
882
+ assert num.allclose(z, answer)
883
+
884
+ def test_interpolate_geo_spatial(self):
885
+ a = [-1.0, 0.0]
886
+ b = [3.0, 4.0]
887
+ c = [4.0, 1.0]
888
+ d = [-3.0, 2.0] #3
889
+ e = [-1.0, -2.0]
890
+ f = [1.0, -2.0] #5
891
+
892
+ vertices = [a, b, c, d,e,f]
893
+ triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
894
+
895
+
896
+ point_coords_absolute = [[-2.0, 2.0],
897
+ [-1.0, 1.0],
898
+ [0.0, 2.0],
899
+ [1.0, 1.0],
900
+ [2.0, 1.0],
901
+ [0.0, 0.0],
902
+ [1.0, 0.0],
903
+ [0.0, -1.0],
904
+ [-0.2, -0.5],
905
+ [-0.9, -1.5],
906
+ [0.5, -1.9],
907
+ [3.0, 1.0]]
908
+
909
+ geo = Geo_reference(57,100, 500)
910
+ point_coords = geo.change_points_geo_ref(point_coords_absolute)
911
+ point_coords = Geospatial_data(point_coords,geo_reference = geo)
912
+
913
+ interp = Interpolate(vertices, triangles)
914
+ f = num.array([linear_function(vertices),2*linear_function(vertices)])
915
+ f = num.transpose(f)
916
+ #print "f",f
917
+ for blocking_max in range(14):
918
+ #if True:
919
+ # blocking_max = 5
920
+ z = interp.interpolate(f, point_coords,
921
+ start_blocking_len=blocking_max)
922
+ answer = [linear_function(point_coords.get_data_points( \
923
+ absolute = True)),
924
+ 2*linear_function(point_coords.get_data_points( \
925
+ absolute = True)) ]
926
+ answer = num.transpose(answer)
927
+ #print "z",z
928
+ #print "answer",answer
929
+ assert num.allclose(z, answer)
930
+
931
+ f = num.array([linear_function(vertices),2*linear_function(vertices),
932
+ 2*linear_function(vertices) - 100])
933
+ f = num.transpose(f)
934
+ #print "f",f
935
+ for blocking_max in range(14):
936
+ #if True:
937
+ # blocking_max = 5
938
+ z = interp.interpolate(f, point_coords,
939
+ start_blocking_len=blocking_max)
940
+ answer = num.array([linear_function(point_coords.get_data_points( \
941
+ absolute = True)),
942
+ 2*linear_function(point_coords.get_data_points( \
943
+ absolute = True)) ,
944
+ 2*linear_function(point_coords.get_data_points( \
945
+ absolute = True))-100])
946
+ z = num.transpose(z)
947
+ #print "z",z
948
+ #print "answer",answer
949
+ assert num.allclose(z, answer)
950
+
951
+ #z = interp.interpolate(f, point_coords, start_blocking_len = 2)
952
+
953
+ #print "z",z
954
+ #print "answer",answer
955
+ #assert num.allclose(z, answer)
956
+
957
+ def test_interpolate_geo_spatial_2(self):
958
+ a = [-1.0, 0.0]
959
+ b = [3.0, 4.0]
960
+ c = [4.0, 1.0]
961
+ d = [-3.0, 2.0] #3
962
+ e = [-1.0, -2.0]
963
+ f = [1.0, -2.0] #5
964
+
965
+ vertices = [a, b, c, d,e,f]
966
+ triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
967
+
968
+ point_coords_absolute = [[-2.0, 2.0],
969
+ [-1.0, 1.0],
970
+ [ 0.0, 2.0],
971
+ [ 1.0, 1.0],
972
+ [ 2.0, 1.0],
973
+ [ 0.0, 0.0],
974
+ [ 1.0, 0.0],
975
+ [ 0.0, -1.0],
976
+ [-0.2, -0.5],
977
+ [-0.9, -1.5],
978
+ [ 0.5, -1.9],
979
+ [ 3.0, 1.0]]
980
+
981
+ geo = Geo_reference(57, 100, 500)
982
+ point_coords = geo.change_points_geo_ref(point_coords_absolute)
983
+ point_coords = Geospatial_data(point_coords, geo_reference=geo)
984
+
985
+ interp = Interpolate(vertices, triangles)
986
+ f = num.array([linear_function(vertices), 2*linear_function(vertices)])
987
+ f = num.transpose(f)
988
+ z = interp.interpolate_block(f, point_coords)
989
+ answer = [linear_function(point_coords.get_data_points(absolute=True)),
990
+ 2*linear_function(point_coords.get_data_points(absolute=True))
991
+ ]
992
+ answer = num.transpose(answer)
993
+ msg = ('Expected z\n%s\nto be close to answer\n%s'
994
+ % (str(z), str(answer)))
995
+ assert num.allclose(z, answer), msg
996
+
997
+ z = interp.interpolate(f, point_coords, start_blocking_len = 2)
998
+
999
+ msg = ('Expected z\n%s\nto be close to answer\n%s'
1000
+ % (str(z), str(answer)))
1001
+ assert num.allclose(z, answer)
1002
+
1003
+
1004
+ def test_interpolate_reuse_if_None(self):
1005
+ a = [-1.0, 0.0]
1006
+ b = [3.0, 4.0]
1007
+ c = [4.0, 1.0]
1008
+ d = [-3.0, 2.0] #3
1009
+ e = [-1.0, -2.0]
1010
+ f = [1.0, -2.0] #5
1011
+
1012
+ vertices = [a, b, c, d,e,f]
1013
+ triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
1014
+
1015
+
1016
+ point_coords = [[-2.0, 2.0],
1017
+ [-1.0, 1.0],
1018
+ [ 0.0, 2.0],
1019
+ [ 1.0, 1.0],
1020
+ [ 2.0, 1.0],
1021
+ [ 0.0, 0.0],
1022
+ [ 1.0, 0.0],
1023
+ [ 0.0, -1.0],
1024
+ [-0.2, -0.5],
1025
+ [-0.9, -1.5],
1026
+ [ 0.5, -1.9],
1027
+ [ 3.0, 1.0]]
1028
+
1029
+ interp = Interpolate(vertices, triangles)
1030
+ f = num.array([linear_function(vertices),2*linear_function(vertices)])
1031
+ f = num.transpose(f)
1032
+ z = interp.interpolate(f, point_coords,
1033
+ start_blocking_len=20)
1034
+ answer = [linear_function(point_coords),
1035
+ 2*linear_function(point_coords) ]
1036
+ answer = num.transpose(answer)
1037
+ #print "z",z
1038
+ #print "answer",answer
1039
+ assert num.allclose(z, answer)
1040
+ assert num.allclose(interp._A_can_be_reused, True)
1041
+
1042
+ z = interp.interpolate(f)
1043
+ assert num.allclose(z, answer)
1044
+
1045
+ # This causes blocking to occur.
1046
+ z = interp.interpolate(f, start_blocking_len=10)
1047
+ assert num.allclose(z, answer)
1048
+ assert num.allclose(interp._A_can_be_reused, False)
1049
+
1050
+ #A is recalculated
1051
+ z = interp.interpolate(f)
1052
+ assert num.allclose(z, answer)
1053
+ assert num.allclose(interp._A_can_be_reused, True)
1054
+
1055
+ interp = Interpolate(vertices, triangles)
1056
+ #Must raise an exception, no points specified
1057
+ try:
1058
+ z = interp.interpolate(f)
1059
+ except:
1060
+ pass
1061
+
1062
+ def xxtest_interpolate_reuse_if_same(self):
1063
+
1064
+ # This on tests that repeated identical interpolation
1065
+ # points makes use of precomputed matrix (Ole)
1066
+ # This is not really a test and is disabled for now
1067
+
1068
+ a = [-1.0, 0.0]
1069
+ b = [3.0, 4.0]
1070
+ c = [4.0, 1.0]
1071
+ d = [-3.0, 2.0] #3
1072
+ e = [-1.0, -2.0]
1073
+ f = [1.0, -2.0] #5
1074
+
1075
+ vertices = [a, b, c, d,e,f]
1076
+ triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
1077
+
1078
+
1079
+ point_coords = [[-2.0, 2.0],
1080
+ [-1.0, 1.0],
1081
+ [ 0.0, 2.0],
1082
+ [ 1.0, 1.0],
1083
+ [ 2.0, 1.0],
1084
+ [ 0.0, 0.0],
1085
+ [ 1.0, 0.0],
1086
+ [ 0.0, -1.0],
1087
+ [-0.2, -0.5],
1088
+ [-0.9, -1.5],
1089
+ [ 0.5, -1.9],
1090
+ [ 3.0, 1.0]]
1091
+
1092
+ interp = Interpolate(vertices, triangles)
1093
+ f = num.array([linear_function(vertices), 2*linear_function(vertices)])
1094
+ f = num.transpose(f)
1095
+ z = interp.interpolate(f, point_coords)
1096
+ answer = [linear_function(point_coords),
1097
+ 2*linear_function(point_coords) ]
1098
+ answer = num.transpose(answer)
1099
+
1100
+ assert num.allclose(z, answer)
1101
+ assert num.allclose(interp._A_can_be_reused, True)
1102
+
1103
+
1104
+ z = interp.interpolate(f) # None
1105
+ assert num.allclose(z, answer)
1106
+ z = interp.interpolate(f, point_coords) # Repeated (not really a test)
1107
+ assert num.allclose(z, answer)
1108
+
1109
+
1110
+
1111
+ def test_interpolation_interface_time_only(self):
1112
+
1113
+ # Test spatio-temporal interpolation
1114
+ # Test that spatio temporal function performs the correct
1115
+ # interpolations in both time and space
1116
+
1117
+
1118
+
1119
+ #Three timesteps
1120
+ time = [1.0, 5.0, 6.0]
1121
+
1122
+
1123
+ #One quantity
1124
+ Q = num.zeros( (3,6), num.float )
1125
+
1126
+ #Linear in time and space
1127
+ a = [0.0, 0.0]
1128
+ b = [0.0, 2.0]
1129
+ c = [2.0, 0.0]
1130
+ d = [0.0, 4.0]
1131
+ e = [2.0, 2.0]
1132
+ f = [4.0, 0.0]
1133
+
1134
+ points = [a, b, c, d, e, f]
1135
+
1136
+ for i, t in enumerate(time):
1137
+ Q[i, :] = t*linear_function(points)
1138
+
1139
+
1140
+ #Check basic interpolation of one quantity using averaging
1141
+ #(no interpolation points or spatial info)
1142
+ I = Interpolation_function(time, [mean(Q[0,:]),
1143
+ mean(Q[1,:]),
1144
+ mean(Q[2,:])])
1145
+
1146
+
1147
+
1148
+ #Check temporal interpolation
1149
+ for i in [0,1,2]:
1150
+ assert num.allclose(I(time[i]), mean(Q[i,:]))
1151
+
1152
+ #Midway
1153
+ assert num.allclose(I( (time[0] + time[1])/2 ),
1154
+ (I(time[0]) + I(time[1]))/2 )
1155
+
1156
+ assert num.allclose(I( (time[1] + time[2])/2 ),
1157
+ (I(time[1]) + I(time[2]))/2 )
1158
+
1159
+ assert num.allclose(I( (time[0] + time[2])/2 ),
1160
+ (I(time[0]) + I(time[2]))/2 )
1161
+
1162
+ #1/3
1163
+ assert num.allclose(I( (time[0] + time[2])/3 ),
1164
+ (I(time[0]) + I(time[2]))/3 )
1165
+
1166
+
1167
+ #Out of bounds checks
1168
+ try:
1169
+ I(time[0]-1)
1170
+ except:
1171
+ pass
1172
+ else:
1173
+ raise Exception('Should raise exception')
1174
+
1175
+ try:
1176
+ I(time[-1]+1)
1177
+ except:
1178
+ pass
1179
+ else:
1180
+ raise Exception('Should raise exception')
1181
+
1182
+
1183
+
1184
+
1185
+ def test_interpolation_interface_spatial_only(self):
1186
+ # Test spatio-temporal interpolation with constant time
1187
+
1188
+ #Three timesteps
1189
+ time = [1.0, 5.0, 6.0]
1190
+
1191
+ #Setup mesh used to represent fitted function
1192
+ a = [0.0, 0.0]
1193
+ b = [0.0, 2.0]
1194
+ c = [2.0, 0.0]
1195
+ d = [0.0, 4.0]
1196
+ e = [2.0, 2.0]
1197
+ f = [4.0, 0.0]
1198
+
1199
+ points = [a, b, c, d, e, f]
1200
+ #bac, bce, ecf, dbe
1201
+ triangles = [[1,0,2], [1,2,4], [4,2,5], [3,1,4]]
1202
+
1203
+
1204
+ #New datapoints where interpolated values are sought
1205
+ interpolation_points = [[ 0.0, 0.0],
1206
+ [ 0.5, 0.5],
1207
+ [ 0.7, 0.7],
1208
+ [ 1.0, 0.5],
1209
+ [ 2.0, 0.4],
1210
+ [ 2.8, 1.2]]
1211
+
1212
+
1213
+ #One quantity linear in space
1214
+ Q = linear_function(points)
1215
+
1216
+
1217
+ #Check interpolation of one quantity using interpolaton points
1218
+ I = Interpolation_function(time, Q,
1219
+ vertex_coordinates = points,
1220
+ triangles = triangles,
1221
+ interpolation_points = interpolation_points,
1222
+ verbose = False)
1223
+
1224
+
1225
+ answer = linear_function(interpolation_points)
1226
+
1227
+ t = time[0]
1228
+ for j in range(50): #t in [1, 6]
1229
+ for id in range(len(interpolation_points)):
1230
+ assert num.allclose(I(t, id), answer[id])
1231
+ t += 0.1
1232
+
1233
+ try:
1234
+ I(1)
1235
+ except:
1236
+ pass
1237
+ else:
1238
+ raise Exception('Should raise exception')
1239
+
1240
+
1241
+ def test_interpolation_interface(self):
1242
+ # Test spatio-temporal interpolation
1243
+ # Test that spatio temporal function performs the correct
1244
+ # interpolations in both time and space
1245
+
1246
+ #Three timesteps
1247
+ time = [1.0, 5.0, 6.0]
1248
+
1249
+ #Setup mesh used to represent fitted function
1250
+ a = [0.0, 0.0]
1251
+ b = [0.0, 2.0]
1252
+ c = [2.0, 0.0]
1253
+ d = [0.0, 4.0]
1254
+ e = [2.0, 2.0]
1255
+ f = [4.0, 0.0]
1256
+
1257
+ points = [a, b, c, d, e, f]
1258
+ #bac, bce, ecf, dbe
1259
+ triangles = [[1,0,2], [1,2,4], [4,2,5], [3,1,4]]
1260
+
1261
+
1262
+ #New datapoints where interpolated values are sought
1263
+ interpolation_points = [[ 0.0, 0.0],
1264
+ [ 0.5, 0.5],
1265
+ [ 0.7, 0.7],
1266
+ [ 1.0, 0.5],
1267
+ [ 2.0, 0.4],
1268
+ [ 2.8, 1.2]]
1269
+
1270
+ #One quantity
1271
+ Q = num.zeros( (3,6), num.float )
1272
+
1273
+ #Linear in time and space
1274
+ for i, t in enumerate(time):
1275
+ Q[i, :] = t*linear_function(points)
1276
+
1277
+ #Check interpolation of one quantity using interpolaton points)
1278
+ I = Interpolation_function(time, Q,
1279
+ vertex_coordinates = points,
1280
+ triangles = triangles,
1281
+ interpolation_points = interpolation_points,
1282
+ verbose = False)
1283
+
1284
+ answer = linear_function(interpolation_points)
1285
+
1286
+ t = time[0]
1287
+ for j in range(50): #t in [1, 6]
1288
+ for id in range(len(interpolation_points)):
1289
+ assert num.allclose(I(t, id), t*answer[id])
1290
+ t += 0.1
1291
+
1292
+ try:
1293
+ I(1)
1294
+ except:
1295
+ pass
1296
+ else:
1297
+ raise Exception('Should raise exception')
1298
+
1299
+
1300
+
1301
+ def test_interpolation_interface_with_time_thinning(self):
1302
+ # Test spatio-temporal interpolation
1303
+ # Test that spatio temporal function performs the correct
1304
+ # interpolations in both time and space
1305
+
1306
+ # Eight timesteps
1307
+ time = [1.0, 2.0, 4.0, 5.0, 7.0, 8.0, 9.0, 10.0]
1308
+
1309
+ # Setup mesh used to represent fitted function
1310
+ a = [0.0, 0.0]
1311
+ b = [0.0, 2.0]
1312
+ c = [2.0, 0.0]
1313
+ d = [0.0, 4.0]
1314
+ e = [2.0, 2.0]
1315
+ f = [4.0, 0.0]
1316
+
1317
+ points = [a, b, c, d, e, f]
1318
+ # bac, bce, ecf, dbe
1319
+ triangles = [[1,0,2], [1,2,4], [4,2,5], [3,1,4]]
1320
+
1321
+
1322
+ # New datapoints where interpolated values are sought
1323
+ interpolation_points = [[ 0.0, 0.0],
1324
+ [ 0.5, 0.5],
1325
+ [ 0.7, 0.7],
1326
+ [ 1.0, 0.5],
1327
+ [ 2.0, 0.4],
1328
+ [ 2.8, 1.2]]
1329
+
1330
+ # One quantity
1331
+ Q = num.zeros((8,6), num.float)
1332
+
1333
+ # Linear in time and space
1334
+ for i, t in enumerate(time):
1335
+ Q[i, :] = t*linear_function(points)
1336
+
1337
+ # Check interpolation of one quantity using interpolaton points) using default
1338
+ # time_thinning of 1
1339
+ I = Interpolation_function(time, Q,
1340
+ vertex_coordinates=points,
1341
+ triangles=triangles,
1342
+ interpolation_points=interpolation_points,
1343
+ verbose=False)
1344
+
1345
+ answer = linear_function(interpolation_points)
1346
+
1347
+
1348
+ t = time[0]
1349
+ for j in range(90): #t in [1, 10]
1350
+ for id in range(len(interpolation_points)):
1351
+ assert num.allclose(I(t, id), t*answer[id])
1352
+ t += 0.1
1353
+
1354
+
1355
+ # Now check time_thinning
1356
+ I = Interpolation_function(time, Q,
1357
+ vertex_coordinates=points,
1358
+ triangles=triangles,
1359
+ interpolation_points=interpolation_points,
1360
+ time_thinning=2,
1361
+ verbose=False)
1362
+
1363
+
1364
+ assert len(I.time) == 4
1365
+ assert( num.allclose(I.time, [1.0, 4.0, 7.0, 9.0] ))
1366
+
1367
+ answer = linear_function(interpolation_points)
1368
+
1369
+ t = time[0]
1370
+ for j in range(80): #t in [1, 9]
1371
+ for id in range(len(interpolation_points)):
1372
+ assert num.allclose(I(t, id), t*answer[id])
1373
+ t += 0.1
1374
+
1375
+
1376
+
1377
+ def test_interpolation_precompute_points(self):
1378
+ # looking at a discrete mesh
1379
+ #
1380
+
1381
+ #Three timesteps
1382
+ time = [0.0, 60.0]
1383
+
1384
+ #Setup mesh used to represent fitted function
1385
+ points = [[ 15., -20.],
1386
+ [ 15., 10.],
1387
+ [ 0., -20.],
1388
+ [ 0., 10.],
1389
+ [ 0., -20.],
1390
+ [ 15., 10.]]
1391
+
1392
+ triangles = [[0, 1, 2],
1393
+ [3, 4, 5]]
1394
+
1395
+ #New datapoints where interpolated values are sought
1396
+ interpolation_points = [[ 1., 0.], [0.,1.]]
1397
+
1398
+ #One quantity
1399
+ Q = num.zeros( (2,6), num.float )
1400
+
1401
+ #Linear in time and space
1402
+ for i, t in enumerate(time):
1403
+ Q[i, :] = t*linear_function(points)
1404
+ #print "Q", Q
1405
+
1406
+
1407
+
1408
+ interp = Interpolate(points, triangles)
1409
+ f = num.array([linear_function(points),2*linear_function(points)])
1410
+ f = num.transpose(f)
1411
+ #print "f",f
1412
+ z = interp.interpolate(f, interpolation_points)
1413
+ answer = [linear_function(interpolation_points),
1414
+ 2*linear_function(interpolation_points) ]
1415
+ answer = num.transpose(answer)
1416
+ #print "z",z
1417
+ #print "answer",answer
1418
+ assert num.allclose(z, answer)
1419
+
1420
+
1421
+ #Check interpolation of one quantity using interpolaton points)
1422
+ I = Interpolation_function(time, Q,
1423
+ vertex_coordinates = points,
1424
+ triangles = triangles,
1425
+ interpolation_points = interpolation_points,
1426
+ verbose = False)
1427
+
1428
+ #print "I.precomputed_values", I.precomputed_values
1429
+
1430
+ msg = 'Interpolation failed'
1431
+ assert num.allclose(I.precomputed_values['Attribute'][1], [60, 60]), msg
1432
+ #self.assertTrue( I.precomputed_values['Attribute'][1] == 60.0,
1433
+ # ' failed')
1434
+
1435
+ def test_interpolation_function_outside_point(self):
1436
+ # Test spatio-temporal interpolation
1437
+ # Test that spatio temporal function performs the correct
1438
+ # interpolations in both time and space
1439
+
1440
+ # Three timesteps
1441
+ time = [1.0, 5.0, 6.0]
1442
+
1443
+ # Setup mesh used to represent fitted function
1444
+ a = [0.0, 0.0]
1445
+ b = [0.0, 2.0]
1446
+ c = [2.0, 0.0]
1447
+ d = [0.0, 4.0]
1448
+ e = [2.0, 2.0]
1449
+ f = [4.0, 0.0]
1450
+
1451
+ points = [a, b, c, d, e, f]
1452
+ #bac, bce, ecf, dbe
1453
+ triangles = [[1,0,2], [1,2,4], [4,2,5], [3,1,4]]
1454
+
1455
+
1456
+ # New datapoints where interpolated values are sought
1457
+ interpolation_points = [[ 0.0, 0.0],
1458
+ [ 0.5, 0.5],
1459
+ [ 0.7, 0.7],
1460
+ [ 1.0, 0.5],
1461
+ [ 2.0, 0.4],
1462
+ [ 545354534, 4354354353]] # outside the mesh
1463
+
1464
+ # One quantity
1465
+ Q = num.zeros( (3,6), num.float )
1466
+
1467
+ # Linear in time and space
1468
+ for i, t in enumerate(time):
1469
+ Q[i, :] = t*linear_function(points)
1470
+
1471
+ # Check interpolation of one quantity using interpolaton points)
1472
+
1473
+ I = Interpolation_function(time, Q,
1474
+ vertex_coordinates = points,
1475
+ triangles = triangles,
1476
+ interpolation_points = interpolation_points,
1477
+ verbose = False)
1478
+
1479
+
1480
+ assert num.alltrue(I.precomputed_values['Attribute'][:,4] != NAN)
1481
+ assert num.sometrue(I.precomputed_values['Attribute'][:,5] == NAN)
1482
+
1483
+ #X = I.precomputed_values['Attribute'][1,:]
1484
+ #print X
1485
+ #print take(X, X == NAN)
1486
+ #print where(X == NAN, range(len(X)), 0)
1487
+
1488
+ answer = linear_function(interpolation_points)
1489
+
1490
+ t = time[0]
1491
+ for j in range(50): #t in [1, 6]
1492
+ for id in range(len(interpolation_points)-1):
1493
+ assert num.allclose(I(t, id), t*answer[id])
1494
+ t += 0.1
1495
+
1496
+ # Now test the point outside the mesh
1497
+ t = time[0]
1498
+ for j in range(50): #t in [1, 6]
1499
+ self.assertTrue(I(t, 5) == NAN, 'Fail!')
1500
+ t += 0.1
1501
+
1502
+ try:
1503
+ I(1)
1504
+ except:
1505
+ pass
1506
+ else:
1507
+ raise Exception('Should raise exception')
1508
+
1509
+
1510
+ def test_interpolation_function_time(self):
1511
+ #Test a long time series with an error in it (this did cause an
1512
+ #error once)
1513
+
1514
+
1515
+ time = num.array(\
1516
+ [0.00000000e+00, 5.00000000e-02, 1.00000000e-01, 1.50000000e-01,
1517
+ 2.00000000e-01, 2.50000000e-01, 3.00000000e-01, 3.50000000e-01,
1518
+ 4.00000000e-01, 4.50000000e-01, 5.00000000e-01, 5.50000000e-01,
1519
+ 6.00000000e-01, 6.50000000e-01, 7.00000000e-01, 7.50000000e-01,
1520
+ 8.00000000e-01, 8.50000000e-01, 9.00000000e-01, 9.50000000e-01,
1521
+ 1.00000000e-00, 1.05000000e+00, 1.10000000e+00, 1.15000000e+00,
1522
+ 1.20000000e+00, 1.25000000e+00, 1.30000000e+00, 1.35000000e+00,
1523
+ 1.40000000e+00, 1.45000000e+00, 1.50000000e+00, 1.55000000e+00,
1524
+ 1.60000000e+00, 1.65000000e+00, 1.70000000e+00, 1.75000000e+00,
1525
+ 1.80000000e+00, 1.85000000e+00, 1.90000000e+00, 1.95000000e+00,
1526
+ 2.00000000e+00, 2.05000000e+00, 2.10000000e+00, 2.15000000e+00,
1527
+ 2.20000000e+00, 2.25000000e+00, 2.30000000e+00, 2.35000000e+00,
1528
+ 2.40000000e+00, 2.45000000e+00, 2.50000000e+00, 2.55000000e+00,
1529
+ 2.60000000e+00, 2.65000000e+00, 2.70000000e+00, 2.75000000e+00,
1530
+ 2.80000000e+00, 2.85000000e+00, 2.90000000e+00, 2.95000000e+00,
1531
+ 3.00000000e+00, 3.05000000e+00, 9.96920997e+36, 3.15000000e+00,
1532
+ 3.20000000e+00, 3.25000000e+00, 3.30000000e+00, 3.35000000e+00,
1533
+ 3.40000000e+00, 3.45000000e+00, 3.50000000e+00, 3.55000000e+00,
1534
+ 3.60000000e+00, 3.65000000e+00, 3.70000000e+00, 3.75000000e+00,
1535
+ 3.80000000e+00, 3.85000000e+00, 3.90000000e+00, 3.95000000e+00,
1536
+ 4.00000000e+00, 4.05000000e+00, 4.10000000e+00, 4.15000000e+00,
1537
+ 4.20000000e+00, 4.25000000e+00, 4.30000000e+00, 4.35000000e+00,
1538
+ 4.40000000e+00, 4.45000000e+00, 4.50000000e+00, 4.55000000e+00,
1539
+ 4.60000000e+00, 4.65000000e+00, 4.70000000e+00, 4.75000000e+00,
1540
+ 4.80000000e+00, 4.85000000e+00, 4.90000000e+00, 4.95000000e+00,
1541
+ 5.00000000e+00, 5.05000000e+00, 5.10000000e+00, 5.15000000e+00,
1542
+ 5.20000000e+00, 5.25000000e+00, 5.30000000e+00, 5.35000000e+00,
1543
+ 5.40000000e+00, 5.45000000e+00, 5.50000000e+00, 5.55000000e+00,
1544
+ 5.60000000e+00, 5.65000000e+00, 5.70000000e+00, 5.75000000e+00,
1545
+ 5.80000000e+00, 5.85000000e+00, 5.90000000e+00, 5.95000000e+00,
1546
+ 6.00000000e+00, 6.05000000e+00, 6.10000000e+00, 6.15000000e+00,
1547
+ 6.20000000e+00, 6.25000000e+00, 6.30000000e+00, 6.35000000e+00,
1548
+ 6.40000000e+00, 6.45000000e+00, 6.50000000e+00, 6.55000000e+00,
1549
+ 6.60000000e+00, 6.65000000e+00, 6.70000000e+00, 6.75000000e+00,
1550
+ 6.80000000e+00, 6.85000000e+00, 6.90000000e+00, 6.95000000e+00,
1551
+ 7.00000000e+00, 7.05000000e+00, 7.10000000e+00, 7.15000000e+00,
1552
+ 7.20000000e+00, 7.25000000e+00, 7.30000000e+00, 7.35000000e+00,
1553
+ 7.40000000e+00, 7.45000000e+00, 7.50000000e+00, 7.55000000e+00,
1554
+ 7.60000000e+00, 7.65000000e+00, 7.70000000e+00, 7.75000000e+00,
1555
+ 7.80000000e+00, 7.85000000e+00, 7.90000000e+00, 7.95000000e+00,
1556
+ 8.00000000e+00, 8.05000000e+00, 8.10000000e+00, 8.15000000e+00,
1557
+ 8.20000000e+00, 8.25000000e+00, 8.30000000e+00, 8.35000000e+00,
1558
+ 8.40000000e+00, 8.45000000e+00, 8.50000000e+00, 8.55000000e+00,
1559
+ 8.60000000e+00, 8.65000000e+00, 8.70000000e+00, 8.75000000e+00,
1560
+ 8.80000000e+00, 8.85000000e+00, 8.90000000e+00, 8.95000000e+00,
1561
+ 9.00000000e+00, 9.05000000e+00, 9.10000000e+00, 9.15000000e+00,
1562
+ 9.20000000e+00, 9.25000000e+00, 9.30000000e+00, 9.35000000e+00,
1563
+ 9.40000000e+00, 9.45000000e+00, 9.50000000e+00, 9.55000000e+00,
1564
+ 9.60000000e+00, 9.65000000e+00, 9.70000000e+00, 9.75000000e+00,
1565
+ 9.80000000e+00, 9.85000000e+00, 9.90000000e+00, 9.95000000e+00,
1566
+ 1.00000000e+01, 1.00500000e+01, 1.01000000e+01, 1.01500000e+01,
1567
+ 1.02000000e+01, 1.02500000e+01, 1.03000000e+01, 1.03500000e+01,
1568
+ 1.04000000e+01, 1.04500000e+01, 1.05000000e+01, 1.05500000e+01,
1569
+ 1.06000000e+01, 1.06500000e+01, 1.07000000e+01, 1.07500000e+01,
1570
+ 1.08000000e+01, 1.08500000e+01, 1.09000000e+01, 1.09500000e+01,
1571
+ 1.10000000e+01, 1.10500000e+01, 1.11000000e+01, 1.11500000e+01,
1572
+ 1.12000000e+01, 1.12500000e+01, 1.13000000e+01, 1.13500000e+01,
1573
+ 1.14000000e+01, 1.14500000e+01, 1.15000000e+01, 1.15500000e+01,
1574
+ 1.16000000e+01, 1.16500000e+01, 1.17000000e+01, 1.17500000e+01,
1575
+ 1.18000000e+01, 1.18500000e+01, 1.19000000e+01, 1.19500000e+01,
1576
+ 1.20000000e+01, 1.20500000e+01, 1.21000000e+01, 1.21500000e+01,
1577
+ 1.22000000e+01, 1.22500000e+01, 1.23000000e+01, 1.23500000e+01,
1578
+ 1.24000000e+01, 1.24500000e+01, 1.25000000e+01, 1.25500000e+01,
1579
+ 1.26000000e+01, 1.26500000e+01, 1.27000000e+01, 1.27500000e+01,
1580
+ 1.28000000e+01, 1.28500000e+01, 1.29000000e+01, 1.29500000e+01,
1581
+ 1.30000000e+01, 1.30500000e+01, 1.31000000e+01, 1.31500000e+01,
1582
+ 1.32000000e+01, 1.32500000e+01, 1.33000000e+01, 1.33500000e+01,
1583
+ 1.34000000e+01, 1.34500000e+01, 1.35000000e+01, 1.35500000e+01,
1584
+ 1.36000000e+01, 1.36500000e+01, 1.37000000e+01, 1.37500000e+01,
1585
+ 1.38000000e+01, 1.38500000e+01, 1.39000000e+01, 1.39500000e+01,
1586
+ 1.40000000e+01, 1.40500000e+01, 1.41000000e+01, 1.41500000e+01,
1587
+ 1.42000000e+01, 1.42500000e+01, 1.43000000e+01, 1.43500000e+01,
1588
+ 1.44000000e+01, 1.44500000e+01, 1.45000000e+01, 1.45500000e+01,
1589
+ 1.46000000e+01, 1.46500000e+01, 1.47000000e+01, 1.47500000e+01,
1590
+ 1.48000000e+01, 1.48500000e+01, 1.49000000e+01, 1.49500000e+01,
1591
+ 1.50000000e+01, 1.50500000e+01, 1.51000000e+01, 1.51500000e+01,
1592
+ 1.52000000e+01, 1.52500000e+01, 1.53000000e+01, 1.53500000e+01,
1593
+ 1.54000000e+01, 1.54500000e+01, 1.55000000e+01, 1.55500000e+01,
1594
+ 1.56000000e+01, 1.56500000e+01, 1.57000000e+01, 1.57500000e+01,
1595
+ 1.58000000e+01, 1.58500000e+01, 1.59000000e+01, 1.59500000e+01,
1596
+ 1.60000000e+01, 1.60500000e+01, 1.61000000e+01, 1.61500000e+01,
1597
+ 1.62000000e+01, 1.62500000e+01, 1.63000000e+01, 1.63500000e+01,
1598
+ 1.64000000e+01, 1.64500000e+01, 1.65000000e+01, 1.65500000e+01,
1599
+ 1.66000000e+01, 1.66500000e+01, 1.67000000e+01, 1.67500000e+01,
1600
+ 1.68000000e+01, 1.68500000e+01, 1.69000000e+01, 1.69500000e+01,
1601
+ 1.70000000e+01, 1.70500000e+01, 1.71000000e+01, 1.71500000e+01,
1602
+ 1.72000000e+01, 1.72500000e+01, 1.73000000e+01, 1.73500000e+01,
1603
+ 1.74000000e+01, 1.74500000e+01, 1.75000000e+01, 1.75500000e+01,
1604
+ 1.76000000e+01, 1.76500000e+01, 1.77000000e+01, 1.77500000e+01,
1605
+ 1.78000000e+01, 1.78500000e+01, 1.79000000e+01, 1.79500000e+01,
1606
+ 1.80000000e+01, 1.80500000e+01, 1.81000000e+01, 1.81500000e+01,
1607
+ 1.82000000e+01, 1.82500000e+01, 1.83000000e+01, 1.83500000e+01,
1608
+ 1.84000000e+01, 1.84500000e+01, 1.85000000e+01, 1.85500000e+01,
1609
+ 1.86000000e+01, 1.86500000e+01, 1.87000000e+01, 1.87500000e+01,
1610
+ 1.88000000e+01, 1.88500000e+01, 1.89000000e+01, 1.89500000e+01,
1611
+ 1.90000000e+01, 1.90500000e+01, 1.91000000e+01, 1.91500000e+01,
1612
+ 1.92000000e+01, 1.92500000e+01, 1.93000000e+01, 1.93500000e+01,
1613
+ 1.94000000e+01, 1.94500000e+01, 1.95000000e+01, 1.95500000e+01,
1614
+ 1.96000000e+01, 1.96500000e+01, 1.97000000e+01, 1.97500000e+01,
1615
+ 1.98000000e+01, 1.98500000e+01, 1.99000000e+01, 1.99500000e+01,
1616
+ 2.00000000e+01, 2.00500000e+01, 2.01000000e+01, 2.01500000e+01,
1617
+ 2.02000000e+01, 2.02500000e+01, 2.03000000e+01, 2.03500000e+01,
1618
+ 2.04000000e+01, 2.04500000e+01, 2.05000000e+01, 2.05500000e+01,
1619
+ 2.06000000e+01, 2.06500000e+01, 2.07000000e+01, 2.07500000e+01,
1620
+ 2.08000000e+01, 2.08500000e+01, 2.09000000e+01, 2.09500000e+01,
1621
+ 2.10000000e+01, 2.10500000e+01, 2.11000000e+01, 2.11500000e+01,
1622
+ 2.12000000e+01, 2.12500000e+01, 2.13000000e+01, 2.13500000e+01,
1623
+ 2.14000000e+01, 2.14500000e+01, 2.15000000e+01, 2.15500000e+01,
1624
+ 2.16000000e+01, 2.16500000e+01, 2.17000000e+01, 2.17500000e+01,
1625
+ 2.18000000e+01, 2.18500000e+01, 2.19000000e+01, 2.19500000e+01,
1626
+ 2.20000000e+01, 2.20500000e+01, 2.21000000e+01, 2.21500000e+01,
1627
+ 2.22000000e+01, 2.22500000e+01, 2.23000000e+01, 2.23500000e+01,
1628
+ 2.24000000e+01, 2.24500000e+01, 2.25000000e+01])
1629
+
1630
+ #print 'Diff', time[1:] - time[:-1]
1631
+
1632
+ #Setup mesh used to represent fitted function
1633
+ a = [0.0, 0.0]
1634
+ b = [0.0, 2.0]
1635
+ c = [2.0, 0.0]
1636
+ d = [0.0, 4.0]
1637
+ e = [2.0, 2.0]
1638
+ f = [4.0, 0.0]
1639
+
1640
+ points = [a, b, c, d, e, f]
1641
+ #bac, bce, ecf, dbe
1642
+ triangles = [[1,0,2], [1,2,4], [4,2,5], [3,1,4]]
1643
+
1644
+
1645
+ #New datapoints where interpolated values are sought
1646
+ interpolation_points = [[ 0.0, 0.0],
1647
+ [ 0.5, 0.5],
1648
+ [ 0.7, 0.7],
1649
+ [ 1.0, 0.5],
1650
+ [ 2.0, 0.4],
1651
+ [ 545354534, 4354354353]] # outside the mesh
1652
+
1653
+ #One quantity
1654
+ Q = num.zeros( (len(time),6), num.float )
1655
+
1656
+ #Linear in time and space
1657
+ for i, t in enumerate(time):
1658
+ Q[i, :] = t*linear_function(points)
1659
+
1660
+ #Check interpolation of one quantity using interpolaton points)
1661
+ try:
1662
+ I = Interpolation_function(time, Q,
1663
+ vertex_coordinates = points,
1664
+ triangles = triangles,
1665
+ interpolation_points = interpolation_points,
1666
+ verbose = False)
1667
+ except:
1668
+ pass
1669
+ else:
1670
+ raise Exception('Should raise exception due to time being non-monotoneous')
1671
+
1672
+
1673
+ def test_points_outside_the_polygon(self):
1674
+ a = [-1.0, 0.0]
1675
+ b = [3.0, 4.0]
1676
+ c = [4.0, 1.0]
1677
+ d = [-3.0, 2.0] #3
1678
+ e = [-1.0, -2.0]
1679
+ f = [1.0, -2.0] #5
1680
+
1681
+ vertices = [a, b, c, d,e,f]
1682
+ triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
1683
+
1684
+ point_coords = [[-2.0, 2.0],
1685
+ [-1.0, 1.0],
1686
+ [9999.0, 9999.0], # point Outside poly
1687
+ [-9999.0, 1.0], # point Outside poly
1688
+ [2.0, 1.0],
1689
+ [0.0, 0.0],
1690
+ [1.0, 0.0],
1691
+ [0.0, -1.0],
1692
+ [-0.2, -0.5],
1693
+ [-0.9, -1.5],
1694
+ [0.5, -1.9],
1695
+ [999999, 9999999]] # point Outside poly
1696
+ geo_data = Geospatial_data(data_points = point_coords)
1697
+
1698
+ interp = Interpolate(vertices, triangles)
1699
+ f = num.array([linear_function(vertices),2*linear_function(vertices)])
1700
+ f = num.transpose(f)
1701
+ #print "f",f
1702
+ z = interp.interpolate(f, geo_data)
1703
+ #z = interp.interpolate(f, point_coords)
1704
+ answer = [linear_function(point_coords),
1705
+ 2*linear_function(point_coords) ]
1706
+ answer = num.transpose(answer)
1707
+ answer[2,:] = [NAN, NAN]
1708
+ answer[3,:] = [NAN, NAN]
1709
+ answer[11,:] = [NAN, NAN]
1710
+ #print "z",z
1711
+ #print "answer _ fixed",answer
1712
+ assert num.allclose(z[0:1], answer[0:1])
1713
+ assert num.allclose(z[4:10], answer[4:10])
1714
+ for i in [2,3,11]:
1715
+ self.assertTrue( z[i,1] == answer[11,1], 'Fail!')
1716
+ self.assertTrue( z[i,0] == answer[11,0], 'Fail!')
1717
+
1718
+
1719
+
1720
+
1721
+ def test_points_in_hole(self):
1722
+
1723
+ v0 = [0.0, 0.0]
1724
+ v1 = [1.0/3.0, 0.0]
1725
+ v2 = [2.0/3.0, 0.0]
1726
+ v3 = [1.0, 0.0]
1727
+ v4 = [0.0, 1.0/3.0]
1728
+ v5 = [1.0/3.0, 1.0/3.0]
1729
+ v6 = [2.0/3.0, 1.0/3.0]
1730
+ v7 = [1.0, 1.0/3.0]
1731
+ v8 = [0.0, 2.0/3.0]
1732
+ v9 = [1.0/3.0, 2.0/3.0]
1733
+ v10 = [2.0/3.0, 2.0/3.0]
1734
+ v11 = [1.0, 2.0/3.0]
1735
+ v12 = [0.0, 1.0]
1736
+ v13 = [1.0/3.0, 1.0]
1737
+ v14 = [2.0/3.0, 1.0]
1738
+ v15 = [1.0, 1.0]
1739
+
1740
+
1741
+ vertices = [v0, v1, v2, v3, v4, v5, v6, v7, v8, v9, v10, v11, v12, v13, v14, v15]
1742
+
1743
+ triangles = [[1,4,0], [1,5,4], [2,5,1], [2,6,5], [3,6,2], [3,7,6],
1744
+ [5,8,4], [5,9,8], [7,10,6], [7,11,10],
1745
+ [9,12,8], [9,13,12], [10,13,9], [10,14,13], [11,14,10], [11,15,14]]
1746
+
1747
+
1748
+
1749
+
1750
+ point_coords = [[0.25, 0.25],
1751
+ [0.25, 0.2],
1752
+ [10.0, 12.0], # point Outside poly
1753
+ [0.5, 0.5], # point in hole
1754
+ [0.5, 0.4], # point in hole
1755
+ [0.0, 0.0],
1756
+ [1.0, 0.0]]
1757
+
1758
+ geo_data = Geospatial_data(data_points = point_coords)
1759
+
1760
+ interp = Interpolate(vertices, triangles)
1761
+ f = num.array([linear_function(vertices),2*linear_function(vertices)])
1762
+ f = num.transpose(f)
1763
+ #print "f",f
1764
+ z = interp.interpolate(f, geo_data)
1765
+ #z = interp.interpolate(f, point_coords)
1766
+ answer = [linear_function(point_coords),
1767
+ 2*linear_function(point_coords) ]
1768
+ answer = num.transpose(answer)
1769
+ answer[2,:] = [NAN, NAN]
1770
+ answer[3,:] = [NAN, NAN]
1771
+ answer[4,:] = [NAN, NAN]
1772
+ #print "z",z
1773
+ #print "answer _ fixed",answer
1774
+ assert num.allclose(z[0:1], answer[0:1])
1775
+ assert num.allclose(z[5:6], answer[5:6])
1776
+ for i in [2,3,4]:
1777
+ self.assertTrue( z[i,1] == answer[2,1], 'Fail!')
1778
+ self.assertTrue( z[i,0] == answer[2,0], 'Fail!')
1779
+
1780
+
1781
+ def test_interpolate_sww2csv(self):
1782
+
1783
+ def elevation_function(x, y):
1784
+ return -x
1785
+
1786
+ # Create mesh
1787
+ mesh_file = tempfile.mktemp(".tsh")
1788
+ points = [[0.0,0.0],[6.0,0.0],[6.0,6.0],[0.0,6.0]]
1789
+ m = Mesh()
1790
+ m.add_vertices(points)
1791
+ m.auto_segment()
1792
+ m.generate_mesh(verbose=False)
1793
+ m.export_mesh_file(mesh_file)
1794
+
1795
+ # Create shallow water domain
1796
+ domain = Domain(mesh_file)
1797
+ os.remove(mesh_file)
1798
+
1799
+ domain.default_order = 2
1800
+
1801
+ # This test was made before tight_slope_limiters were introduced
1802
+ # Since were are testing interpolation values this is OK
1803
+ domain.tight_slope_limiters = 0
1804
+
1805
+ # Set some field values
1806
+ domain.set_quantity('elevation', elevation_function)
1807
+ domain.set_quantity('friction', 0.03)
1808
+ domain.set_quantity('xmomentum', 3.0)
1809
+ domain.set_quantity('ymomentum', 4.0)
1810
+
1811
+ ######################
1812
+ # Boundary conditions
1813
+ B = anuga.Transmissive_boundary(domain)
1814
+ domain.set_boundary( {'exterior': B})
1815
+
1816
+ # This call mangles the stage values.
1817
+ domain.distribute_to_vertices_and_edges()
1818
+ domain.set_quantity('stage', 1.0)
1819
+
1820
+
1821
+ domain.set_name('datatest' + str(time.time()))
1822
+ domain.smooth = True
1823
+ domain.reduction = mean
1824
+
1825
+ sww = SWW_file(domain)
1826
+ sww.store_connectivity()
1827
+ sww.store_timestep()
1828
+ domain.set_quantity('stage', 10.0) # This is automatically limited
1829
+ # So it will not be less than the elevation
1830
+ domain.time = 2.
1831
+ sww.store_timestep()
1832
+
1833
+ # Test the function
1834
+ points = [[5.0,1.],[0.5,2.]]
1835
+ depth_file = tempfile.mktemp(".csv")
1836
+ velocity_x_file = tempfile.mktemp(".csv")
1837
+ velocity_y_file = tempfile.mktemp(".csv")
1838
+ interpolate_sww2csv(sww.filename, points, depth_file,
1839
+ velocity_x_file,
1840
+ velocity_y_file,
1841
+ verbose=False)
1842
+
1843
+ depth_answers_array = [[0.0, 6.0, 1.5], [2.0, 15., 10.5]]
1844
+ velocity_x_answers_array = [[0.0, 3./6.0, 3./1.5],
1845
+ [2.0, 3./15., 3/10.5]]
1846
+ velocity_y_answers_array = [[0.0, 4./6.0, 4./1.5],
1847
+ [2.0, 4./15., 4./10.5]]
1848
+ depth_file_handle = file(depth_file)
1849
+ depth_reader = csv.reader(depth_file_handle)
1850
+ depth_reader.next()
1851
+ velocity_x_file_handle = file(velocity_x_file)
1852
+ velocity_x_reader = csv.reader(velocity_x_file_handle)
1853
+ velocity_x_reader.next()
1854
+ for depths, velocitys, depth_answers, velocity_answers in map(None,
1855
+ depth_reader,
1856
+ velocity_x_reader,
1857
+ depth_answers_array,
1858
+ velocity_x_answers_array):
1859
+ for i in range(len(depths)):
1860
+ #print "depths",depths[i]
1861
+ #print "depth_answers",depth_answers[i]
1862
+ #print "velocitys",velocitys[i]
1863
+ #print "velocity_answers_array", velocity_answers[i]
1864
+ msg = 'Interpolation failed'
1865
+ assert num.allclose(float(depths[i]), depth_answers[i]), msg
1866
+ assert num.allclose(float(velocitys[i]), velocity_answers[i]), msg
1867
+
1868
+ velocity_y_file_handle = file(velocity_y_file)
1869
+ velocity_y_reader = csv.reader(velocity_y_file_handle)
1870
+ velocity_y_reader.next()
1871
+ for velocitys, velocity_answers in map(None,
1872
+ velocity_y_reader,
1873
+ velocity_y_answers_array):
1874
+ for i in range(len(depths)):
1875
+ #print "depths",depths[i]
1876
+ #print "depth_answers",depth_answers[i]
1877
+ #print "velocitys",velocitys[i]
1878
+ #print "velocity_answers_array", velocity_answers[i]
1879
+ msg = 'Interpolation failed'
1880
+ assert num.allclose(float(depths[i]), depth_answers[i]), msg
1881
+ assert num.allclose(float(velocitys[i]), velocity_answers[i]), msg
1882
+
1883
+ # clean up
1884
+ depth_file_handle.close()
1885
+ velocity_y_file_handle.close()
1886
+ velocity_x_file_handle.close()
1887
+ #print "sww.filename",sww.filename
1888
+ os.remove(sww.filename)
1889
+ os.remove(depth_file)
1890
+ os.remove(velocity_x_file)
1891
+ os.remove(velocity_y_file)
1892
+
1893
+
1894
+ def test_interpolate_one_point_many_triangles(self):
1895
+ z0 = [2.0, 5.0]
1896
+
1897
+ v0 = [0.0, 0.0]
1898
+ v1 = [1.0, 0.0]
1899
+ v2 = [2.0, 0.0]
1900
+ v3 = [3.0, 0.0]
1901
+ v4 = [4.0, 0.0]
1902
+ v5 = [5.0, 0.0]
1903
+ v6 = [6.0, 0.0]
1904
+ v7 = [0.0, 10.0]
1905
+ v8 = [1.0, 10.0]
1906
+ v9 = [2.0, 10.0]
1907
+ v10= [3.0, 10.0]
1908
+ v11= [4.0, 10.0]
1909
+ v12= [5.0, 10.0]
1910
+ v13= [6.0, 10.0]
1911
+
1912
+ vertices = [z0,v0, v1, v2, v3,v4 ,v5, v6, v7, v8, v9, v10, v11,
1913
+ v12, v13]
1914
+ triangles = [
1915
+ [0,1,2],
1916
+ [0,2,3],
1917
+ [0,3,4],
1918
+ [0,4,5],
1919
+ [0,5,6],
1920
+ [0,6,7],
1921
+ [0,9,8],
1922
+ [0,10,9],
1923
+ [0,11,10],
1924
+ [0,12,11],
1925
+ [0,13,12],
1926
+ [0,14,13]
1927
+ ]
1928
+
1929
+ d0 = [1.0, 1.0]
1930
+ d1 = [1.0, 2.0]
1931
+ d2 = [3.0, 1.0]
1932
+ point_coords = [ d0, d1, d2]
1933
+ try:
1934
+ interp = Interpolate(vertices, triangles)
1935
+ except RuntimeError:
1936
+ self.assertTrue(0 ==1, 'quad fails with 14 verts at the same \
1937
+ position. Should be able to handle any number.')
1938
+ f = linear_function(vertices)
1939
+ z = interp.interpolate(f, point_coords)
1940
+ answer = linear_function(point_coords)
1941
+
1942
+ #print "z",z
1943
+ #print "answer",answer
1944
+ assert num.allclose(z, answer)
1945
+
1946
+ ################################################################################
1947
+
1948
+ if __name__ == "__main__":
1949
+ suite = unittest.makeSuite(Test_Interpolate,'test')
1950
+ runner = unittest.TextTestRunner() #verbosity=1)
1951
+ runner.run(suite)
1952
+