anuga 1.3.5__zip
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__config__.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__config__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__init__.py +363 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__metadata__.py +6 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__metadata__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/__init__.py +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/ermapper_grids.py +251 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/ermapper_grids.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/file_function.py +483 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/file_function.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/gauge.py +1080 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/gauge.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/general_mesh.py +865 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/general_mesh.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_boundary_conditions.py +862 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_boundary_conditions.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_domain.py +2274 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_domain.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory.py +1011 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh.py +1488 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_table_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain.py +299 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity.py +2162 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/region.py +321 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/region.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/setup.py +48 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tag_region.py +167 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tag_region.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/show_balanced_limiters.py +87 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_ermapper.py +189 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_gauge.py +539 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_general_mesh.py +517 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_generic_boundary_conditions.py +439 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_generic_domain.py +907 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_ghost.py +52 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_neighbour_mesh.py +1854 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_pmesh2domain.py +219 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_quantity.py +2859 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_region.py +99 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_tag_region.py +258 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_util.py +1632 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/util.py +928 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/util.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/__init__.py +12 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection.py +298 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/setup.py +27 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/tests/test_advection.py +183 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/__init__.py +4 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/alpha_shape.py +654 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/alpha_shape.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/tests/test_alpha_shape.py +402 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/anuga_exceptions.py +46 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/anuga_exceptions.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/__init__.py +18 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/caching.py +2531 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/caching.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/dummy_classes_for_testing.py +20 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/dummy_classes_for_testing.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/tests/test_caching.py +895 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/compile_all.py +82 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/compile_all.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/config.py +273 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/config.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/__init__.py +6 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/geo_reference.py +478 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/geo_reference.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/lat_long_UTM_conversion.py +250 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/lat_long_UTM_conversion.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/point.py +128 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/point.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/redfearn.py +233 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/redfearn.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points.csv +11 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z53.csv +11 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z53.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z54.csv +11 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z54.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/redfearn.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/redfearn.xls +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_geo_reference.py +716 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_lat_long_UTM_conversion.py +126 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_point.py +125 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_redfearn.py +508 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/__init__.py +9 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_class.py +1627 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_class.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_polygons.py +114 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_polygons.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_routines.py +362 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_routines.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/new_culvert_class.py +1630 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/new_culvert_class.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/culvert_polygons_example.py +38 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve.csv +20 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve2.csv +20 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve2.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/unittests.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/unittests.xls +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/run_culvert_flat_water_lev.py +173 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_class.py +812 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_polygons.py +84 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines.py +586 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_box_10pct.py +342 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_box_1pct.py +342 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_pipe_10pct.py +338 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_pipe_1pct.py +338 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_new_culvert_class.py +810 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/__init__.py +9 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/exposure.py +223 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/exposure.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/inundation_damage.py +467 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/inundation_damage.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/test_exposure.py +325 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/test_inundation_damage.py +610 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/error_api.py +130 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/error_api.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/extras.py +193 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/extras.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/__init__.py +54 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/csv_file.py +399 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/csv_file.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/mux.py +120 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/mux.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/netcdf.py +266 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/netcdf.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/pts.py +29 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/pts.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/setup.py +27 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sts.py +293 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sts.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sww.py +1552 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sww.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_csv.py +413 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_mux.py +1539 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_read_sww.py +350 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_sww.py +560 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_ungenerate.py +283 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_urs.py +217 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/ungenerate.py +92 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/ungenerate.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/urs.py +323 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/urs.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/urs_ext.pyd +0 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/spatialInputUtil.py +1394 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/sww_merge.py +820 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_csv_tools.py +435 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_data_audit.py +393 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_file_utils.py +157 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_mem_time_equation.py +47 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_numerical_tools.py +616 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_plot_utils.py +455 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_quantity_setting_functions.py +369 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/validation_utilities/typeset_report.py +55 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga-1.3.5-py2.7.egg-info/PKG-INFO +117 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga-1.3.5-py2.7.egg-info/SOURCES.txt +1329 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga-1.3.5-py2.7.egg-info/dependency_links.txt +1 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga-1.3.5-py2.7.egg-info/not-zip-safe +1 -0
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Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/fit_interpolate/tests/test_interpolate.py
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#!/usr/bin/env python
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#TEST
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#import time, os
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import sys
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import os
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import unittest
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import tempfile
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import csv
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import time
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import numpy as num
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from math import sqrt
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# ANUGA code imports
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import anuga
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from anuga.fit_interpolate.interpolate import Interpolate
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from anuga.fit_interpolate.interpolate import Interpolation_function
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from anuga.fit_interpolate.interpolate import interpolate
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from anuga.fit_interpolate.interpolate import interpolate_sww2csv
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from anuga.coordinate_transforms.geo_reference import Geo_reference
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from anuga.utilities.numerical_tools import mean, NAN
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from anuga.file.sww import SWW_file
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from anuga.shallow_water.shallow_water_domain import Domain
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from anuga.abstract_2d_finite_volumes.quantity import Quantity
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from anuga.geospatial_data.geospatial_data import Geospatial_data
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from anuga.pmesh.mesh import Mesh
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from anuga.file.netcdf import NetCDFFile
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def distance(x, y):
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return sqrt(num.sum((num.array(x)-num.array(y))**2))
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def linear_function(point):
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point = num.array(point)
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return point[:,0]+point[:,1]
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class Test_Interpolate(unittest.TestCase):
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def setUp(self):
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import time
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from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
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#Create basic mesh
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points, vertices, boundary = rectangular(2, 2)
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#Create shallow water domain
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domain = Domain(points, vertices, boundary)
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domain.default_order=2
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#Set some field values
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domain.set_quantity('elevation', lambda x,y: -x)
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domain.set_quantity('friction', 0.03)
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######################
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# Boundary conditions
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B = anuga.Transmissive_boundary(domain)
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domain.set_boundary( {'left': B, 'right': B, 'top': B, 'bottom': B})
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######################
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#Initial condition - with jumps
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bed = domain.quantities['elevation'].vertex_values
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stage = num.zeros(bed.shape, num.float)
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h = 0.3
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for i in range(stage.shape[0]):
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if i % 2 == 0:
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stage[i,:] = bed[i,:] + h
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else:
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stage[i,:] = bed[i,:]
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domain.set_quantity('stage', stage)
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domain.distribute_to_vertices_and_edges()
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self.domain = domain
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C = domain.get_vertex_coordinates()
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self.X = C[:,0:6:2].copy()
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self.Y = C[:,1:6:2].copy()
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self.F = bed
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def tearDown(self):
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pass
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def test_datapoint_at_centroid(self):
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a = [0.0, 0.0]
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b = [0.0, 2.0]
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c = [2.0,0.0]
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points = [a, b, c]
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vertices = [ [1,0,2] ] #bac
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data = [ [2.0/3, 2.0/3] ] #Use centroid as one data point
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interp = Interpolate(points, vertices)
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A, _, _, _ = interp._build_interpolation_matrix_A(data)
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assert num.allclose(A.todense(), [[1./3, 1./3, 1./3]])
|
|
112
|
+
|
|
113
|
+
def test_datapoint_in_hole(self):
|
|
114
|
+
# create 3 right-angled triangles arranged in a bigger triangle
|
|
115
|
+
a = [0.0, 0.0] #0
|
|
116
|
+
b = [0.0, 2.0] #1
|
|
117
|
+
c = [2.0,0.0] #2
|
|
118
|
+
d = [0.0,4.0] #3
|
|
119
|
+
e = [2.0,2.0] #4
|
|
120
|
+
f = [4.0,0.0] #5
|
|
121
|
+
points = [a, b, c, d, e, f]
|
|
122
|
+
vertices = [ [1,0,2], [3,1,4], [4,2,5] ] #bac dbe ecf
|
|
123
|
+
|
|
124
|
+
point_in_hole = [1.5, 1.5] # a point in the hole
|
|
125
|
+
data = [ [20, 20], [0.3, 0.3], point_in_hole, [2.5, 0.3], [30, 30] ] #some points inside and outside the hole
|
|
126
|
+
|
|
127
|
+
# any function for the vertices, we don't care about the result
|
|
128
|
+
f = num.array([linear_function(points), 2*linear_function(points)])
|
|
129
|
+
f = num.transpose(f)
|
|
130
|
+
|
|
131
|
+
interp = Interpolate(points, vertices)
|
|
132
|
+
interp.interpolate(f, data)
|
|
133
|
+
|
|
134
|
+
assert not set(interp.inside_poly_indices).intersection(set(interp.outside_poly_indices)), \
|
|
135
|
+
'Some points are in both lists!'
|
|
136
|
+
assert len(interp.inside_poly_indices) == 2
|
|
137
|
+
assert len(interp.outside_poly_indices) == 3
|
|
138
|
+
|
|
139
|
+
interp.outside_poly_indices.sort()
|
|
140
|
+
assert interp.outside_poly_indices[1] == 2, \
|
|
141
|
+
'third outside point should be inside the hole!'
|
|
142
|
+
|
|
143
|
+
def test_simple_interpolation_example(self):
|
|
144
|
+
|
|
145
|
+
from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
|
|
146
|
+
|
|
147
|
+
# Create basic mesh
|
|
148
|
+
points, vertices, boundary = rectangular(1, 3)
|
|
149
|
+
|
|
150
|
+
# Create shallow water domain
|
|
151
|
+
domain = Domain(points, vertices, boundary)
|
|
152
|
+
|
|
153
|
+
#----------------
|
|
154
|
+
#Constant values
|
|
155
|
+
#----------------
|
|
156
|
+
quantity = Quantity(domain,[[0,0,0],[1,1,1],[2,2,2],[3,3,3],
|
|
157
|
+
[4,4,4],[5,5,5]])
|
|
158
|
+
|
|
159
|
+
|
|
160
|
+
x, y, vertex_values, triangles = quantity.get_vertex_values(xy=True, smooth=False)
|
|
161
|
+
vertex_coordinates = num.concatenate( (x[:, num.newaxis], y[:, num.newaxis]), axis=1 )
|
|
162
|
+
# FIXME: This concat should roll into get_vertex_values
|
|
163
|
+
|
|
164
|
+
|
|
165
|
+
# Get interpolated values at centroids
|
|
166
|
+
interpolation_points = domain.get_centroid_coordinates()
|
|
167
|
+
answer = quantity.get_values(location='centroids')
|
|
168
|
+
|
|
169
|
+
I = Interpolate(vertex_coordinates, triangles)
|
|
170
|
+
result = I.interpolate(vertex_values, interpolation_points)
|
|
171
|
+
assert num.allclose(result, answer)
|
|
172
|
+
|
|
173
|
+
|
|
174
|
+
#----------------
|
|
175
|
+
# Variable values
|
|
176
|
+
#----------------
|
|
177
|
+
quantity = Quantity(domain,[[0,1,2],[3,1,7],[2,1,2],[3,3,7],
|
|
178
|
+
[1,4,-9],[2,5,0]])
|
|
179
|
+
|
|
180
|
+
x, y, vertex_values, triangles = quantity.get_vertex_values(xy=True, smooth=False)
|
|
181
|
+
vertex_coordinates = num.concatenate( (x[:, num.newaxis], y[:, num.newaxis]), axis=1 )
|
|
182
|
+
# FIXME: This concat should roll into get_vertex_values
|
|
183
|
+
|
|
184
|
+
|
|
185
|
+
# Get interpolated values at centroids
|
|
186
|
+
interpolation_points = domain.get_centroid_coordinates()
|
|
187
|
+
answer = quantity.get_values(location='centroids')
|
|
188
|
+
|
|
189
|
+
I = Interpolate(vertex_coordinates, triangles)
|
|
190
|
+
result = I.interpolate(vertex_values, interpolation_points)
|
|
191
|
+
assert num.allclose(result, answer)
|
|
192
|
+
|
|
193
|
+
|
|
194
|
+
def test_simple_interpolation_example_using_direct_interface(self):
|
|
195
|
+
|
|
196
|
+
from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
|
|
197
|
+
|
|
198
|
+
# Create basic mesh
|
|
199
|
+
points, vertices, boundary = rectangular(1, 3)
|
|
200
|
+
|
|
201
|
+
# Create shallow water domain
|
|
202
|
+
domain = Domain(points, vertices, boundary)
|
|
203
|
+
|
|
204
|
+
#----------------
|
|
205
|
+
# Constant values
|
|
206
|
+
#----------------
|
|
207
|
+
quantity = Quantity(domain,[[0,0,0],[1,1,1],[2,2,2],[3,3,3],
|
|
208
|
+
[4,4,4],[5,5,5]])
|
|
209
|
+
|
|
210
|
+
|
|
211
|
+
x, y, vertex_values, triangles = quantity.get_vertex_values(xy=True, smooth=False)
|
|
212
|
+
vertex_coordinates = num.concatenate( (x[:, num.newaxis], y[:, num.newaxis]), axis=1 )
|
|
213
|
+
# FIXME: This concat should roll into get_vertex_values
|
|
214
|
+
|
|
215
|
+
|
|
216
|
+
# Get interpolated values at centroids
|
|
217
|
+
interpolation_points = domain.get_centroid_coordinates()
|
|
218
|
+
answer = quantity.get_values(location='centroids')
|
|
219
|
+
|
|
220
|
+
result = interpolate(vertex_coordinates, triangles, vertex_values, interpolation_points)
|
|
221
|
+
assert num.allclose(result, answer)
|
|
222
|
+
|
|
223
|
+
|
|
224
|
+
#----------------
|
|
225
|
+
# Variable values
|
|
226
|
+
#----------------
|
|
227
|
+
quantity = Quantity(domain,[[0,1,2],[3,1,7],[2,1,2],[3,3,7],
|
|
228
|
+
[1,4,-9],[2,5,0]])
|
|
229
|
+
|
|
230
|
+
x, y, vertex_values, triangles = quantity.get_vertex_values(xy=True, smooth=False)
|
|
231
|
+
vertex_coordinates = num.concatenate( (x[:, num.newaxis], y[:, num.newaxis]), axis=1 )
|
|
232
|
+
# FIXME: This concat should roll into get_vertex_values
|
|
233
|
+
|
|
234
|
+
|
|
235
|
+
# Get interpolated values at centroids
|
|
236
|
+
interpolation_points = domain.get_centroid_coordinates()
|
|
237
|
+
answer = quantity.get_values(location='centroids')
|
|
238
|
+
|
|
239
|
+
result = interpolate(vertex_coordinates, triangles,
|
|
240
|
+
vertex_values, interpolation_points)
|
|
241
|
+
assert num.allclose(result, answer)
|
|
242
|
+
|
|
243
|
+
|
|
244
|
+
def test_simple_interpolation_example_using_direct_interface_and_caching(self):
|
|
245
|
+
|
|
246
|
+
from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
|
|
247
|
+
|
|
248
|
+
# Create basic mesh
|
|
249
|
+
points, vertices, boundary = rectangular(1, 3)
|
|
250
|
+
|
|
251
|
+
# Create shallow water domain
|
|
252
|
+
domain = Domain(points, vertices, boundary)
|
|
253
|
+
|
|
254
|
+
#----------------
|
|
255
|
+
# First call
|
|
256
|
+
#----------------
|
|
257
|
+
quantity = Quantity(domain,[[0,1,2],[3,1,7],[2,1,2],[3,3,7],
|
|
258
|
+
[1,4,-9],[2,5,0]])
|
|
259
|
+
|
|
260
|
+
x, y, vertex_values, triangles = quantity.get_vertex_values(xy=True, smooth=False)
|
|
261
|
+
vertex_coordinates = num.concatenate( (x[:, num.newaxis], y[:, num.newaxis]), axis=1 )
|
|
262
|
+
# FIXME: This concat should roll into get_vertex_values
|
|
263
|
+
|
|
264
|
+
# Get interpolated values at centroids
|
|
265
|
+
interpolation_points = domain.get_centroid_coordinates()
|
|
266
|
+
answer = quantity.get_values(location='centroids')
|
|
267
|
+
result = interpolate(vertex_coordinates, triangles,
|
|
268
|
+
vertex_values, interpolation_points,
|
|
269
|
+
use_cache=True,
|
|
270
|
+
verbose=False)
|
|
271
|
+
assert num.allclose(result, answer)
|
|
272
|
+
|
|
273
|
+
# Second call using the cache
|
|
274
|
+
result = interpolate(vertex_coordinates, triangles,
|
|
275
|
+
vertex_values, interpolation_points,
|
|
276
|
+
use_cache=True,
|
|
277
|
+
verbose=False)
|
|
278
|
+
assert num.allclose(result, answer)
|
|
279
|
+
|
|
280
|
+
|
|
281
|
+
def test_quad_tree(self):
|
|
282
|
+
p0 = [-10.0, -10.0]
|
|
283
|
+
p1 = [20.0, -10.0]
|
|
284
|
+
p2 = [-10.0, 20.0]
|
|
285
|
+
p3 = [10.0, 50.0]
|
|
286
|
+
p4 = [30.0, 30.0]
|
|
287
|
+
p5 = [50.0, 10.0]
|
|
288
|
+
p6 = [40.0, 60.0]
|
|
289
|
+
p7 = [60.0, 40.0]
|
|
290
|
+
p8 = [-66.0, 20.0]
|
|
291
|
+
p9 = [10.0, -66.0]
|
|
292
|
+
|
|
293
|
+
points = [p0, p1, p2, p3, p4, p5, p6, p7, p8, p9]
|
|
294
|
+
triangles = [ [0, 1, 2],
|
|
295
|
+
[3, 2, 4],
|
|
296
|
+
[4, 2, 1],
|
|
297
|
+
[4, 1, 5],
|
|
298
|
+
[3, 4, 6],
|
|
299
|
+
[6, 4, 7],
|
|
300
|
+
[7, 4, 5],
|
|
301
|
+
[8, 0, 2],
|
|
302
|
+
[0, 9, 1]]
|
|
303
|
+
|
|
304
|
+
data = [ [4,4] ]
|
|
305
|
+
interp = Interpolate(points, triangles)
|
|
306
|
+
#print "PDSG - interp.get_A()", interp.get_A()
|
|
307
|
+
answer = [ [ 0.06666667, 0.46666667, 0.46666667, 0.,
|
|
308
|
+
0., 0. , 0., 0., 0., 0.]]
|
|
309
|
+
|
|
310
|
+
A,_,_,_ = interp._build_interpolation_matrix_A(data)
|
|
311
|
+
assert num.allclose(A.todense(), answer)
|
|
312
|
+
|
|
313
|
+
#interp.set_point_coordinates([[-30, -30]]) #point outside of mesh
|
|
314
|
+
#print "PDSG - interp.get_A()", interp.get_A()
|
|
315
|
+
data = [[-30, -30]]
|
|
316
|
+
answer = [ [ 0.0, 0.0, 0.0, 0.,
|
|
317
|
+
0., 0. , 0., 0., 0., 0.]]
|
|
318
|
+
|
|
319
|
+
A,_,_,_ = interp._build_interpolation_matrix_A(data)
|
|
320
|
+
assert num.allclose(A.todense(), answer)
|
|
321
|
+
|
|
322
|
+
|
|
323
|
+
#point outside of quad tree root cell
|
|
324
|
+
#interp.set_point_coordinates([[-70, -70]])
|
|
325
|
+
#print "PDSG - interp.get_A()", interp.get_A()
|
|
326
|
+
data = [[-70, -70]]
|
|
327
|
+
answer = [ [ 0.0, 0.0, 0.0, 0.,
|
|
328
|
+
0., 0. , 0., 0., 0., 0.]]
|
|
329
|
+
|
|
330
|
+
A,_,_,_ = interp._build_interpolation_matrix_A(data)
|
|
331
|
+
assert num.allclose(A.todense(), answer)
|
|
332
|
+
|
|
333
|
+
|
|
334
|
+
def test_datapoints_at_vertices(self):
|
|
335
|
+
#Test that data points coinciding with vertices yield a diagonal matrix
|
|
336
|
+
|
|
337
|
+
|
|
338
|
+
a = [0.0, 0.0]
|
|
339
|
+
b = [0.0, 2.0]
|
|
340
|
+
c = [2.0,0.0]
|
|
341
|
+
points = [a, b, c]
|
|
342
|
+
vertices = [ [1,0,2] ] #bac
|
|
343
|
+
|
|
344
|
+
data = points #Use data at vertices
|
|
345
|
+
|
|
346
|
+
interp = Interpolate(points, vertices)
|
|
347
|
+
answer = [[1., 0., 0.],
|
|
348
|
+
[0., 1., 0.],
|
|
349
|
+
[0., 0., 1.]]
|
|
350
|
+
|
|
351
|
+
A,_,_,_ = interp._build_interpolation_matrix_A(data)
|
|
352
|
+
assert num.allclose(A.todense(), answer)
|
|
353
|
+
|
|
354
|
+
|
|
355
|
+
def test_datapoints_on_edge_midpoints(self):
|
|
356
|
+
#Try datapoints midway on edges -
|
|
357
|
+
#each point should affect two matrix entries equally
|
|
358
|
+
|
|
359
|
+
|
|
360
|
+
a = [0.0, 0.0]
|
|
361
|
+
b = [0.0, 2.0]
|
|
362
|
+
c = [2.0,0.0]
|
|
363
|
+
points = [a, b, c]
|
|
364
|
+
vertices = [ [1,0,2] ] #bac
|
|
365
|
+
|
|
366
|
+
data = [ [0., 1.], [1., 0.], [1., 1.] ]
|
|
367
|
+
answer = [[0.5, 0.5, 0.0], #Affects vertex 1 and 0
|
|
368
|
+
[0.5, 0.0, 0.5], #Affects vertex 0 and 2
|
|
369
|
+
[0.0, 0.5, 0.5]]
|
|
370
|
+
interp = Interpolate(points, vertices)
|
|
371
|
+
|
|
372
|
+
A,_,_,_ = interp._build_interpolation_matrix_A(data)
|
|
373
|
+
assert num.allclose(A.todense(), answer)
|
|
374
|
+
|
|
375
|
+
def test_datapoints_on_edges(self):
|
|
376
|
+
#Try datapoints on edges -
|
|
377
|
+
#each point should affect two matrix entries in proportion
|
|
378
|
+
|
|
379
|
+
|
|
380
|
+
a = [0.0, 0.0]
|
|
381
|
+
b = [0.0, 2.0]
|
|
382
|
+
c = [2.0,0.0]
|
|
383
|
+
points = [a, b, c]
|
|
384
|
+
vertices = [ [1,0,2] ] #bac
|
|
385
|
+
|
|
386
|
+
data = [ [0., 1.5], [1.5, 0.], [1.5, 0.5] ]
|
|
387
|
+
answer = [[0.25, 0.75, 0.0], #Affects vertex 1 and 0
|
|
388
|
+
[0.25, 0.0, 0.75], #Affects vertex 0 and 2
|
|
389
|
+
[0.0, 0.25, 0.75]]
|
|
390
|
+
|
|
391
|
+
interp = Interpolate(points, vertices)
|
|
392
|
+
|
|
393
|
+
A,_,_,_ = interp._build_interpolation_matrix_A(data)
|
|
394
|
+
assert num.allclose(A.todense(), answer)
|
|
395
|
+
|
|
396
|
+
|
|
397
|
+
def test_arbitrary_datapoints(self):
|
|
398
|
+
#Try arbitrary datapoints
|
|
399
|
+
|
|
400
|
+
|
|
401
|
+
a = [0.0, 0.0]
|
|
402
|
+
b = [0.0, 2.0]
|
|
403
|
+
c = [2.0,0.0]
|
|
404
|
+
points = [a, b, c]
|
|
405
|
+
vertices = [ [1,0,2] ] #bac
|
|
406
|
+
|
|
407
|
+
data = [ [0.2, 1.5], [0.123, 1.768], [1.43, 0.44] ]
|
|
408
|
+
|
|
409
|
+
interp = Interpolate(points, vertices)
|
|
410
|
+
#print "interp.get_A()", interp.get_A()
|
|
411
|
+
|
|
412
|
+
A,_,_,_ = interp._build_interpolation_matrix_A(data)
|
|
413
|
+
results = A.todense()
|
|
414
|
+
assert num.allclose(num.sum(results, axis=1), 1.0)
|
|
415
|
+
|
|
416
|
+
|
|
417
|
+
def test_arbitrary_datapoints_return_centroids(self):
|
|
418
|
+
#Try arbitrary datapoints, making sure they return
|
|
419
|
+
#an interpolation matrix for the intersected triangle's
|
|
420
|
+
#centroid.
|
|
421
|
+
|
|
422
|
+
a = [1.0, 0.0]
|
|
423
|
+
b = [0.0, 3.0]
|
|
424
|
+
c = [4.0,0.0]
|
|
425
|
+
points = [a, b, c]
|
|
426
|
+
vertices = [ [1,0,2] ]
|
|
427
|
+
|
|
428
|
+
data = [ [1.2, 1.5], [1.123, 1.768], [2.43, 0.44] ]
|
|
429
|
+
|
|
430
|
+
interp = Interpolate(points, vertices)
|
|
431
|
+
|
|
432
|
+
third = [1.0/3.0, 1.0/3.0, 1.0/3.0]
|
|
433
|
+
answer = [third, third, third]
|
|
434
|
+
|
|
435
|
+
A,_,_,_ = interp._build_interpolation_matrix_A(data, output_centroids=True)
|
|
436
|
+
results = A.todense()
|
|
437
|
+
assert num.allclose(results, answer)
|
|
438
|
+
|
|
439
|
+
|
|
440
|
+
def test_arbitrary_datapoints_some_outside(self):
|
|
441
|
+
#Try arbitrary datapoints one outside the triangle.
|
|
442
|
+
#That one should be ignored
|
|
443
|
+
|
|
444
|
+
|
|
445
|
+
a = [0.0, 0.0]
|
|
446
|
+
b = [0.0, 2.0]
|
|
447
|
+
c = [2.0,0.0]
|
|
448
|
+
points = [a, b, c]
|
|
449
|
+
vertices = [ [1,0,2] ] #bac
|
|
450
|
+
|
|
451
|
+
data = [ [0.2, 1.5], [0.123, 1.768], [1.43, 0.44], [5.0, 7.0]]
|
|
452
|
+
|
|
453
|
+
interp = Interpolate(points, vertices)
|
|
454
|
+
|
|
455
|
+
A,_,_,_ = interp._build_interpolation_matrix_A(data)
|
|
456
|
+
results = A.todense()
|
|
457
|
+
assert num.allclose(num.sum(results, axis=1), [1,1,1,0])
|
|
458
|
+
|
|
459
|
+
|
|
460
|
+
|
|
461
|
+
# this causes a memory error in scipy.sparse
|
|
462
|
+
def test_more_triangles(self):
|
|
463
|
+
|
|
464
|
+
a = [-1.0, 0.0]
|
|
465
|
+
b = [3.0, 4.0]
|
|
466
|
+
c = [4.0,1.0]
|
|
467
|
+
d = [-3.0, 2.0] #3
|
|
468
|
+
e = [-1.0,-2.0]
|
|
469
|
+
f = [1.0, -2.0] #5
|
|
470
|
+
|
|
471
|
+
points = [a, b, c, d,e,f]
|
|
472
|
+
triangles = [[0,1,3],[1,0,2],[0,4,5], [0,5,2]] #abd bac aef afc
|
|
473
|
+
|
|
474
|
+
#Data points
|
|
475
|
+
data = [ [-3., 2.0], [-2, 1], [0.0, 1], [0, 3], [2, 3], [-1.0/3,-4./3] ]
|
|
476
|
+
interp = Interpolate(points, triangles)
|
|
477
|
+
|
|
478
|
+
answer = [[0.0, 0.0, 0.0, 1.0, 0.0, 0.0], #Affects point d
|
|
479
|
+
[0.5, 0.0, 0.0, 0.5, 0.0, 0.0], #Affects points a and d
|
|
480
|
+
[0.75, 0.25, 0.0, 0.0, 0.0, 0.0], #Affects points a and b
|
|
481
|
+
[0.0, 0.5, 0.0, 0.5, 0.0, 0.0], #Affects points a and d
|
|
482
|
+
[0.25, 0.75, 0.0, 0.0, 0.0, 0.0], #Affects points a and b
|
|
483
|
+
[1./3, 0.0, 0.0, 0.0, 1./3, 1./3]] #Affects points a, e and f
|
|
484
|
+
|
|
485
|
+
|
|
486
|
+
A,_,_,_ = interp._build_interpolation_matrix_A(data)
|
|
487
|
+
A = A.todense()
|
|
488
|
+
for i in range(A.shape[0]):
|
|
489
|
+
for j in range(A.shape[1]):
|
|
490
|
+
if not num.allclose(A[i,j], answer[i][j]):
|
|
491
|
+
print i,j,':',A[i,j], answer[i][j]
|
|
492
|
+
|
|
493
|
+
|
|
494
|
+
#results = interp._build_interpolation_matrix_A(data).todense()
|
|
495
|
+
|
|
496
|
+
assert num.allclose(A, answer)
|
|
497
|
+
|
|
498
|
+
def test_geo_ref(self):
|
|
499
|
+
v0 = [0.0, 0.0]
|
|
500
|
+
v1 = [0.0, 5.0]
|
|
501
|
+
v2 = [5.0, 0.0]
|
|
502
|
+
|
|
503
|
+
vertices_absolute = [v0, v1, v2]
|
|
504
|
+
triangles = [ [1,0,2] ] #bac
|
|
505
|
+
|
|
506
|
+
geo = Geo_reference(57,100, 500)
|
|
507
|
+
|
|
508
|
+
vertices = geo.change_points_geo_ref(vertices_absolute)
|
|
509
|
+
#print "vertices",vertices
|
|
510
|
+
|
|
511
|
+
d0 = [1.0, 1.0]
|
|
512
|
+
d1 = [1.0, 2.0]
|
|
513
|
+
d2 = [3.0, 1.0]
|
|
514
|
+
point_coords = [ d0, d1, d2]
|
|
515
|
+
|
|
516
|
+
interp = Interpolate(vertices, triangles, mesh_origin=geo)
|
|
517
|
+
f = linear_function(vertices_absolute)
|
|
518
|
+
z = interp.interpolate(f, point_coords)
|
|
519
|
+
answer = linear_function(point_coords)
|
|
520
|
+
|
|
521
|
+
#print "z",z
|
|
522
|
+
#print "answer",answer
|
|
523
|
+
assert num.allclose(z, answer)
|
|
524
|
+
|
|
525
|
+
|
|
526
|
+
z = interp.interpolate(f, point_coords, start_blocking_len = 2)
|
|
527
|
+
answer = linear_function(point_coords)
|
|
528
|
+
|
|
529
|
+
#print "z",z
|
|
530
|
+
#print "answer",answer
|
|
531
|
+
assert num.allclose(z, answer)
|
|
532
|
+
|
|
533
|
+
|
|
534
|
+
def test_sigma_epsilon(self):
|
|
535
|
+
"""
|
|
536
|
+
def test_sigma_epsilon(self):
|
|
537
|
+
Testing ticket 168. I could not reduce the bug to this small
|
|
538
|
+
test though.
|
|
539
|
+
|
|
540
|
+
"""
|
|
541
|
+
v0 = [22031.25, 59687.5]
|
|
542
|
+
v1 = [22500., 60000.]
|
|
543
|
+
v2 = [22350.31640625, 59716.71484375]
|
|
544
|
+
|
|
545
|
+
vertices = [v0, v1, v2]
|
|
546
|
+
triangles = [ [1,0,2] ] #bac
|
|
547
|
+
|
|
548
|
+
|
|
549
|
+
point_coords = [[22050., 59700.]]
|
|
550
|
+
|
|
551
|
+
interp = Interpolate(vertices, triangles)
|
|
552
|
+
f = linear_function(vertices)
|
|
553
|
+
z = interp.interpolate(f, point_coords)
|
|
554
|
+
answer = linear_function(point_coords)
|
|
555
|
+
|
|
556
|
+
#print "z",z
|
|
557
|
+
#print "answer",answer
|
|
558
|
+
assert num.allclose(z, answer)
|
|
559
|
+
|
|
560
|
+
|
|
561
|
+
z = interp.interpolate(f, point_coords, start_blocking_len = 2)
|
|
562
|
+
answer = linear_function(point_coords)
|
|
563
|
+
|
|
564
|
+
#print "z",z
|
|
565
|
+
#print "answer",answer
|
|
566
|
+
assert num.allclose(z, answer)
|
|
567
|
+
|
|
568
|
+
|
|
569
|
+
def test_Geospatial_verts(self):
|
|
570
|
+
v0 = [0.0, 0.0]
|
|
571
|
+
v1 = [0.0, 5.0]
|
|
572
|
+
v2 = [5.0, 0.0]
|
|
573
|
+
|
|
574
|
+
vertices_absolute = [v0, v1, v2]
|
|
575
|
+
triangles = [ [1,0,2] ] #bac
|
|
576
|
+
|
|
577
|
+
geo = Geo_reference(57,100, 500)
|
|
578
|
+
vertices = geo.change_points_geo_ref(vertices_absolute)
|
|
579
|
+
geopoints = Geospatial_data(vertices,geo_reference = geo)
|
|
580
|
+
#print "vertices",vertices
|
|
581
|
+
|
|
582
|
+
d0 = [1.0, 1.0]
|
|
583
|
+
d1 = [1.0, 2.0]
|
|
584
|
+
d2 = [3.0, 1.0]
|
|
585
|
+
point_coords = [ d0, d1, d2]
|
|
586
|
+
|
|
587
|
+
interp = Interpolate(geopoints, triangles)
|
|
588
|
+
f = linear_function(vertices_absolute)
|
|
589
|
+
z = interp.interpolate(f, point_coords)
|
|
590
|
+
answer = linear_function(point_coords)
|
|
591
|
+
|
|
592
|
+
#print "z",z
|
|
593
|
+
#print "answer",answer
|
|
594
|
+
assert num.allclose(z, answer)
|
|
595
|
+
|
|
596
|
+
z = interp.interpolate(f, point_coords, start_blocking_len = 2)
|
|
597
|
+
answer = linear_function(point_coords)
|
|
598
|
+
|
|
599
|
+
#print "z",z
|
|
600
|
+
#print "answer",answer
|
|
601
|
+
assert num.allclose(z, answer)
|
|
602
|
+
|
|
603
|
+
def test_interpolate_attributes_to_points(self):
|
|
604
|
+
v0 = [0.0, 0.0]
|
|
605
|
+
v1 = [0.0, 5.0]
|
|
606
|
+
v2 = [5.0, 0.0]
|
|
607
|
+
|
|
608
|
+
vertices = [v0, v1, v2]
|
|
609
|
+
triangles = [ [1,0,2] ] #bac
|
|
610
|
+
|
|
611
|
+
d0 = [1.0, 1.0]
|
|
612
|
+
d1 = [1.0, 2.0]
|
|
613
|
+
d2 = [3.0, 1.0]
|
|
614
|
+
point_coords = [ d0, d1, d2]
|
|
615
|
+
|
|
616
|
+
interp = Interpolate(vertices, triangles)
|
|
617
|
+
f = linear_function(vertices)
|
|
618
|
+
z = interp.interpolate(f, point_coords)
|
|
619
|
+
answer = linear_function(point_coords)
|
|
620
|
+
|
|
621
|
+
#print "z",z
|
|
622
|
+
#print "answer",answer
|
|
623
|
+
assert num.allclose(z, answer)
|
|
624
|
+
|
|
625
|
+
|
|
626
|
+
z = interp.interpolate(f, point_coords, start_blocking_len = 2)
|
|
627
|
+
answer = linear_function(point_coords)
|
|
628
|
+
|
|
629
|
+
#print "z",z
|
|
630
|
+
#print "answer",answer
|
|
631
|
+
assert num.allclose(z, answer)
|
|
632
|
+
|
|
633
|
+
def test_interpolate_attributes_to_pointsII(self):
|
|
634
|
+
a = [-1.0, 0.0]
|
|
635
|
+
b = [3.0, 4.0]
|
|
636
|
+
c = [4.0, 1.0]
|
|
637
|
+
d = [-3.0, 2.0] #3
|
|
638
|
+
e = [-1.0, -2.0]
|
|
639
|
+
f = [1.0, -2.0] #5
|
|
640
|
+
|
|
641
|
+
vertices = [a, b, c, d,e,f]
|
|
642
|
+
triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
|
|
643
|
+
|
|
644
|
+
|
|
645
|
+
point_coords = [[-2.0, 2.0],
|
|
646
|
+
[-1.0, 1.0],
|
|
647
|
+
[0.0, 2.0],
|
|
648
|
+
[1.0, 1.0],
|
|
649
|
+
[2.0, 1.0],
|
|
650
|
+
[0.0, 0.0],
|
|
651
|
+
[1.0, 0.0],
|
|
652
|
+
[0.0, -1.0],
|
|
653
|
+
[-0.2, -0.5],
|
|
654
|
+
[-0.9, -1.5],
|
|
655
|
+
[0.5, -1.9],
|
|
656
|
+
[3.0, 1.0]]
|
|
657
|
+
|
|
658
|
+
interp = Interpolate(vertices, triangles)
|
|
659
|
+
f = linear_function(vertices)
|
|
660
|
+
z = interp.interpolate(f, point_coords)
|
|
661
|
+
answer = linear_function(point_coords)
|
|
662
|
+
#print "z",z
|
|
663
|
+
#print "answer",answer
|
|
664
|
+
assert num.allclose(z, answer)
|
|
665
|
+
|
|
666
|
+
z = interp.interpolate(f, point_coords, start_blocking_len = 2)
|
|
667
|
+
answer = linear_function(point_coords)
|
|
668
|
+
|
|
669
|
+
#print "z",z
|
|
670
|
+
#print "answer",answer
|
|
671
|
+
assert num.allclose(z, answer)
|
|
672
|
+
|
|
673
|
+
def test_interpolate_attributes_to_pointsIII(self):
|
|
674
|
+
#Test linear interpolation of known values at vertices to
|
|
675
|
+
#new points inside a triangle
|
|
676
|
+
|
|
677
|
+
a = [0.0, 0.0]
|
|
678
|
+
b = [0.0, 5.0]
|
|
679
|
+
c = [5.0, 0.0]
|
|
680
|
+
d = [5.0, 5.0]
|
|
681
|
+
|
|
682
|
+
vertices = [a, b, c, d]
|
|
683
|
+
triangles = [ [1,0,2], [2,3,1] ] #bac, cdb
|
|
684
|
+
|
|
685
|
+
#Points within triangle 1
|
|
686
|
+
d0 = [1.0, 1.0]
|
|
687
|
+
d1 = [1.0, 2.0]
|
|
688
|
+
d2 = [3.0, 1.0]
|
|
689
|
+
|
|
690
|
+
#Point within triangle 2
|
|
691
|
+
d3 = [4.0, 3.0]
|
|
692
|
+
|
|
693
|
+
#Points on common edge
|
|
694
|
+
d4 = [2.5, 2.5]
|
|
695
|
+
d5 = [4.0, 1.0]
|
|
696
|
+
|
|
697
|
+
#Point on common vertex
|
|
698
|
+
d6 = [0., 5.]
|
|
699
|
+
|
|
700
|
+
point_coords = [d0, d1, d2, d3, d4, d5, d6]
|
|
701
|
+
|
|
702
|
+
interp = Interpolate(vertices, triangles)
|
|
703
|
+
|
|
704
|
+
#Known values at vertices
|
|
705
|
+
#Functions are x+y, x+2y, 2x+y, x-y-5
|
|
706
|
+
f = [ [0., 0., 0., -5.], # (0,0)
|
|
707
|
+
[5., 10., 5., -10.], # (0,5)
|
|
708
|
+
[5., 5., 10.0, 0.], # (5,0)
|
|
709
|
+
[10., 15., 15., -5.]] # (5,5)
|
|
710
|
+
|
|
711
|
+
z = interp.interpolate(f, point_coords)
|
|
712
|
+
answer = [ [2., 3., 3., -5.], # (1,1)
|
|
713
|
+
[3., 5., 4., -6.], # (1,2)
|
|
714
|
+
[4., 5., 7., -3.], # (3,1)
|
|
715
|
+
[7., 10., 11., -4.], # (4,3)
|
|
716
|
+
[5., 7.5, 7.5, -5.], # (2.5, 2.5)
|
|
717
|
+
[5., 6., 9., -2.], # (4,1)
|
|
718
|
+
[5., 10., 5., -10.]] # (0,5)
|
|
719
|
+
|
|
720
|
+
#print "***********"
|
|
721
|
+
#print "z",z
|
|
722
|
+
#print "answer",answer
|
|
723
|
+
#print "***********"
|
|
724
|
+
|
|
725
|
+
assert num.allclose(z, answer)
|
|
726
|
+
|
|
727
|
+
|
|
728
|
+
z = interp.interpolate(f, point_coords, start_blocking_len = 2)
|
|
729
|
+
|
|
730
|
+
#print "z",z
|
|
731
|
+
#print "answer",answer
|
|
732
|
+
assert num.allclose(z, answer)
|
|
733
|
+
|
|
734
|
+
def test_interpolate_point_outside_of_mesh(self):
|
|
735
|
+
#Test linear interpolation of known values at vertices to
|
|
736
|
+
#new points inside a triangle
|
|
737
|
+
|
|
738
|
+
a = [0.0, 0.0]
|
|
739
|
+
b = [0.0, 5.0]
|
|
740
|
+
c = [5.0, 0.0]
|
|
741
|
+
d = [5.0, 5.0]
|
|
742
|
+
|
|
743
|
+
vertices = [a, b, c, d]
|
|
744
|
+
triangles = [ [1,0,2], [2,3,1] ] #bac, cdb
|
|
745
|
+
|
|
746
|
+
#Far away point
|
|
747
|
+
d7 = [-1., -1.]
|
|
748
|
+
|
|
749
|
+
point_coords = [ d7]
|
|
750
|
+
interp = Interpolate(vertices, triangles)
|
|
751
|
+
|
|
752
|
+
#Known values at vertices
|
|
753
|
+
#Functions are x+y, x+2y, 2x+y, x-y-5
|
|
754
|
+
f = [ [0., 0., 0., -5.], # (0,0)
|
|
755
|
+
[5., 10., 5., -10.], # (0,5)
|
|
756
|
+
[5., 5., 10.0, 0.], # (5,0)
|
|
757
|
+
[10., 15., 15., -5.]] # (5,5)
|
|
758
|
+
|
|
759
|
+
z = interp.interpolate(f, point_coords) #, verbose=True)
|
|
760
|
+
answer = num.array([ [NAN, NAN, NAN, NAN]]) # (-1,-1)
|
|
761
|
+
|
|
762
|
+
#print "***********"
|
|
763
|
+
#print "z",z
|
|
764
|
+
#print "answer",answer
|
|
765
|
+
#print "***********"
|
|
766
|
+
|
|
767
|
+
#Should an error message be returned if points are outside
|
|
768
|
+
# of the mesh?
|
|
769
|
+
# A warning message is printed, if verbose is on.
|
|
770
|
+
|
|
771
|
+
for i in range(4):
|
|
772
|
+
self.assertTrue( z[0,i] == answer[0,i], 'Fail!')
|
|
773
|
+
|
|
774
|
+
z = interp.interpolate(f, point_coords, start_blocking_len = 2)
|
|
775
|
+
|
|
776
|
+
#print "z",z
|
|
777
|
+
#print "answer",answer
|
|
778
|
+
|
|
779
|
+
for i in range(4):
|
|
780
|
+
self.assertTrue( z[0,i] == answer[0,i], 'Fail!')
|
|
781
|
+
|
|
782
|
+
|
|
783
|
+
def test_interpolate_attributes_to_pointsIV(self):
|
|
784
|
+
a = [-1.0, 0.0]
|
|
785
|
+
b = [3.0, 4.0]
|
|
786
|
+
c = [4.0, 1.0]
|
|
787
|
+
d = [-3.0, 2.0] #3
|
|
788
|
+
e = [-1.0, -2.0]
|
|
789
|
+
f = [1.0, -2.0] #5
|
|
790
|
+
|
|
791
|
+
vertices = [a, b, c, d,e,f]
|
|
792
|
+
triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
|
|
793
|
+
|
|
794
|
+
|
|
795
|
+
point_coords = [[-2.0, 2.0],
|
|
796
|
+
[-1.0, 1.0],
|
|
797
|
+
[0.0, 2.0],
|
|
798
|
+
[1.0, 1.0],
|
|
799
|
+
[2.0, 1.0],
|
|
800
|
+
[0.0, 0.0],
|
|
801
|
+
[1.0, 0.0],
|
|
802
|
+
[0.0, -1.0],
|
|
803
|
+
[-0.2, -0.5],
|
|
804
|
+
[-0.9, -1.5],
|
|
805
|
+
[0.5, -1.9],
|
|
806
|
+
[3.0, 1.0]]
|
|
807
|
+
|
|
808
|
+
interp = Interpolate(vertices, triangles)
|
|
809
|
+
f = num.array([linear_function(vertices),2*linear_function(vertices)])
|
|
810
|
+
f = num.transpose(f)
|
|
811
|
+
#print "f",f
|
|
812
|
+
z = interp.interpolate(f, point_coords)
|
|
813
|
+
answer = [linear_function(point_coords),
|
|
814
|
+
2*linear_function(point_coords) ]
|
|
815
|
+
answer = num.transpose(answer)
|
|
816
|
+
#print "z",z
|
|
817
|
+
#print "answer",answer
|
|
818
|
+
assert num.allclose(z, answer)
|
|
819
|
+
|
|
820
|
+
z = interp.interpolate(f, point_coords, start_blocking_len = 2)
|
|
821
|
+
|
|
822
|
+
#print "z",z
|
|
823
|
+
#print "answer",answer
|
|
824
|
+
assert num.allclose(z, answer)
|
|
825
|
+
|
|
826
|
+
def test_interpolate_blocking(self):
|
|
827
|
+
a = [-1.0, 0.0]
|
|
828
|
+
b = [3.0, 4.0]
|
|
829
|
+
c = [4.0, 1.0]
|
|
830
|
+
d = [-3.0, 2.0] #3
|
|
831
|
+
e = [-1.0, -2.0]
|
|
832
|
+
f = [1.0, -2.0] #5
|
|
833
|
+
|
|
834
|
+
vertices = [a, b, c, d,e,f]
|
|
835
|
+
triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
|
|
836
|
+
|
|
837
|
+
|
|
838
|
+
point_coords = [[-2.0, 2.0],
|
|
839
|
+
[-1.0, 1.0],
|
|
840
|
+
[0.0, 2.0],
|
|
841
|
+
[1.0, 1.0],
|
|
842
|
+
[2.0, 1.0],
|
|
843
|
+
[0.0, 0.0],
|
|
844
|
+
[1.0, 0.0],
|
|
845
|
+
[0.0, -1.0],
|
|
846
|
+
[-0.2, -0.5],
|
|
847
|
+
[-0.9, -1.5],
|
|
848
|
+
[0.5, -1.9],
|
|
849
|
+
[3.0, 1.0]]
|
|
850
|
+
|
|
851
|
+
interp = Interpolate(vertices, triangles)
|
|
852
|
+
f = num.array([linear_function(vertices),2*linear_function(vertices)])
|
|
853
|
+
f = num.transpose(f)
|
|
854
|
+
#print "f",f
|
|
855
|
+
for blocking_max in range(len(point_coords)+2):
|
|
856
|
+
#if True:
|
|
857
|
+
# blocking_max = 5
|
|
858
|
+
z = interp.interpolate(f, point_coords,
|
|
859
|
+
start_blocking_len=blocking_max)
|
|
860
|
+
answer = [linear_function(point_coords),
|
|
861
|
+
2*linear_function(point_coords) ]
|
|
862
|
+
answer = num.transpose(answer)
|
|
863
|
+
#print "z",z
|
|
864
|
+
#print "answer",answer
|
|
865
|
+
assert num.allclose(z, answer)
|
|
866
|
+
|
|
867
|
+
f = num.array([linear_function(vertices),2*linear_function(vertices),
|
|
868
|
+
2*linear_function(vertices) - 100])
|
|
869
|
+
f = num.transpose(f)
|
|
870
|
+
#print "f",f
|
|
871
|
+
for blocking_max in range(len(point_coords)+2):
|
|
872
|
+
#if True:
|
|
873
|
+
# blocking_max = 5
|
|
874
|
+
z = interp.interpolate(f, point_coords,
|
|
875
|
+
start_blocking_len=blocking_max)
|
|
876
|
+
answer = num.array([linear_function(point_coords),
|
|
877
|
+
2*linear_function(point_coords) ,
|
|
878
|
+
2*linear_function(point_coords)-100])
|
|
879
|
+
z = num.transpose(z)
|
|
880
|
+
#print "z",z
|
|
881
|
+
#print "answer",answer
|
|
882
|
+
assert num.allclose(z, answer)
|
|
883
|
+
|
|
884
|
+
def test_interpolate_geo_spatial(self):
|
|
885
|
+
a = [-1.0, 0.0]
|
|
886
|
+
b = [3.0, 4.0]
|
|
887
|
+
c = [4.0, 1.0]
|
|
888
|
+
d = [-3.0, 2.0] #3
|
|
889
|
+
e = [-1.0, -2.0]
|
|
890
|
+
f = [1.0, -2.0] #5
|
|
891
|
+
|
|
892
|
+
vertices = [a, b, c, d,e,f]
|
|
893
|
+
triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
|
|
894
|
+
|
|
895
|
+
|
|
896
|
+
point_coords_absolute = [[-2.0, 2.0],
|
|
897
|
+
[-1.0, 1.0],
|
|
898
|
+
[0.0, 2.0],
|
|
899
|
+
[1.0, 1.0],
|
|
900
|
+
[2.0, 1.0],
|
|
901
|
+
[0.0, 0.0],
|
|
902
|
+
[1.0, 0.0],
|
|
903
|
+
[0.0, -1.0],
|
|
904
|
+
[-0.2, -0.5],
|
|
905
|
+
[-0.9, -1.5],
|
|
906
|
+
[0.5, -1.9],
|
|
907
|
+
[3.0, 1.0]]
|
|
908
|
+
|
|
909
|
+
geo = Geo_reference(57,100, 500)
|
|
910
|
+
point_coords = geo.change_points_geo_ref(point_coords_absolute)
|
|
911
|
+
point_coords = Geospatial_data(point_coords,geo_reference = geo)
|
|
912
|
+
|
|
913
|
+
interp = Interpolate(vertices, triangles)
|
|
914
|
+
f = num.array([linear_function(vertices),2*linear_function(vertices)])
|
|
915
|
+
f = num.transpose(f)
|
|
916
|
+
#print "f",f
|
|
917
|
+
for blocking_max in range(14):
|
|
918
|
+
#if True:
|
|
919
|
+
# blocking_max = 5
|
|
920
|
+
z = interp.interpolate(f, point_coords,
|
|
921
|
+
start_blocking_len=blocking_max)
|
|
922
|
+
answer = [linear_function(point_coords.get_data_points( \
|
|
923
|
+
absolute = True)),
|
|
924
|
+
2*linear_function(point_coords.get_data_points( \
|
|
925
|
+
absolute = True)) ]
|
|
926
|
+
answer = num.transpose(answer)
|
|
927
|
+
#print "z",z
|
|
928
|
+
#print "answer",answer
|
|
929
|
+
assert num.allclose(z, answer)
|
|
930
|
+
|
|
931
|
+
f = num.array([linear_function(vertices),2*linear_function(vertices),
|
|
932
|
+
2*linear_function(vertices) - 100])
|
|
933
|
+
f = num.transpose(f)
|
|
934
|
+
#print "f",f
|
|
935
|
+
for blocking_max in range(14):
|
|
936
|
+
#if True:
|
|
937
|
+
# blocking_max = 5
|
|
938
|
+
z = interp.interpolate(f, point_coords,
|
|
939
|
+
start_blocking_len=blocking_max)
|
|
940
|
+
answer = num.array([linear_function(point_coords.get_data_points( \
|
|
941
|
+
absolute = True)),
|
|
942
|
+
2*linear_function(point_coords.get_data_points( \
|
|
943
|
+
absolute = True)) ,
|
|
944
|
+
2*linear_function(point_coords.get_data_points( \
|
|
945
|
+
absolute = True))-100])
|
|
946
|
+
z = num.transpose(z)
|
|
947
|
+
#print "z",z
|
|
948
|
+
#print "answer",answer
|
|
949
|
+
assert num.allclose(z, answer)
|
|
950
|
+
|
|
951
|
+
#z = interp.interpolate(f, point_coords, start_blocking_len = 2)
|
|
952
|
+
|
|
953
|
+
#print "z",z
|
|
954
|
+
#print "answer",answer
|
|
955
|
+
#assert num.allclose(z, answer)
|
|
956
|
+
|
|
957
|
+
def test_interpolate_geo_spatial_2(self):
|
|
958
|
+
a = [-1.0, 0.0]
|
|
959
|
+
b = [3.0, 4.0]
|
|
960
|
+
c = [4.0, 1.0]
|
|
961
|
+
d = [-3.0, 2.0] #3
|
|
962
|
+
e = [-1.0, -2.0]
|
|
963
|
+
f = [1.0, -2.0] #5
|
|
964
|
+
|
|
965
|
+
vertices = [a, b, c, d,e,f]
|
|
966
|
+
triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
|
|
967
|
+
|
|
968
|
+
point_coords_absolute = [[-2.0, 2.0],
|
|
969
|
+
[-1.0, 1.0],
|
|
970
|
+
[ 0.0, 2.0],
|
|
971
|
+
[ 1.0, 1.0],
|
|
972
|
+
[ 2.0, 1.0],
|
|
973
|
+
[ 0.0, 0.0],
|
|
974
|
+
[ 1.0, 0.0],
|
|
975
|
+
[ 0.0, -1.0],
|
|
976
|
+
[-0.2, -0.5],
|
|
977
|
+
[-0.9, -1.5],
|
|
978
|
+
[ 0.5, -1.9],
|
|
979
|
+
[ 3.0, 1.0]]
|
|
980
|
+
|
|
981
|
+
geo = Geo_reference(57, 100, 500)
|
|
982
|
+
point_coords = geo.change_points_geo_ref(point_coords_absolute)
|
|
983
|
+
point_coords = Geospatial_data(point_coords, geo_reference=geo)
|
|
984
|
+
|
|
985
|
+
interp = Interpolate(vertices, triangles)
|
|
986
|
+
f = num.array([linear_function(vertices), 2*linear_function(vertices)])
|
|
987
|
+
f = num.transpose(f)
|
|
988
|
+
z = interp.interpolate_block(f, point_coords)
|
|
989
|
+
answer = [linear_function(point_coords.get_data_points(absolute=True)),
|
|
990
|
+
2*linear_function(point_coords.get_data_points(absolute=True))
|
|
991
|
+
]
|
|
992
|
+
answer = num.transpose(answer)
|
|
993
|
+
msg = ('Expected z\n%s\nto be close to answer\n%s'
|
|
994
|
+
% (str(z), str(answer)))
|
|
995
|
+
assert num.allclose(z, answer), msg
|
|
996
|
+
|
|
997
|
+
z = interp.interpolate(f, point_coords, start_blocking_len = 2)
|
|
998
|
+
|
|
999
|
+
msg = ('Expected z\n%s\nto be close to answer\n%s'
|
|
1000
|
+
% (str(z), str(answer)))
|
|
1001
|
+
assert num.allclose(z, answer)
|
|
1002
|
+
|
|
1003
|
+
|
|
1004
|
+
def test_interpolate_reuse_if_None(self):
|
|
1005
|
+
a = [-1.0, 0.0]
|
|
1006
|
+
b = [3.0, 4.0]
|
|
1007
|
+
c = [4.0, 1.0]
|
|
1008
|
+
d = [-3.0, 2.0] #3
|
|
1009
|
+
e = [-1.0, -2.0]
|
|
1010
|
+
f = [1.0, -2.0] #5
|
|
1011
|
+
|
|
1012
|
+
vertices = [a, b, c, d,e,f]
|
|
1013
|
+
triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
|
|
1014
|
+
|
|
1015
|
+
|
|
1016
|
+
point_coords = [[-2.0, 2.0],
|
|
1017
|
+
[-1.0, 1.0],
|
|
1018
|
+
[ 0.0, 2.0],
|
|
1019
|
+
[ 1.0, 1.0],
|
|
1020
|
+
[ 2.0, 1.0],
|
|
1021
|
+
[ 0.0, 0.0],
|
|
1022
|
+
[ 1.0, 0.0],
|
|
1023
|
+
[ 0.0, -1.0],
|
|
1024
|
+
[-0.2, -0.5],
|
|
1025
|
+
[-0.9, -1.5],
|
|
1026
|
+
[ 0.5, -1.9],
|
|
1027
|
+
[ 3.0, 1.0]]
|
|
1028
|
+
|
|
1029
|
+
interp = Interpolate(vertices, triangles)
|
|
1030
|
+
f = num.array([linear_function(vertices),2*linear_function(vertices)])
|
|
1031
|
+
f = num.transpose(f)
|
|
1032
|
+
z = interp.interpolate(f, point_coords,
|
|
1033
|
+
start_blocking_len=20)
|
|
1034
|
+
answer = [linear_function(point_coords),
|
|
1035
|
+
2*linear_function(point_coords) ]
|
|
1036
|
+
answer = num.transpose(answer)
|
|
1037
|
+
#print "z",z
|
|
1038
|
+
#print "answer",answer
|
|
1039
|
+
assert num.allclose(z, answer)
|
|
1040
|
+
assert num.allclose(interp._A_can_be_reused, True)
|
|
1041
|
+
|
|
1042
|
+
z = interp.interpolate(f)
|
|
1043
|
+
assert num.allclose(z, answer)
|
|
1044
|
+
|
|
1045
|
+
# This causes blocking to occur.
|
|
1046
|
+
z = interp.interpolate(f, start_blocking_len=10)
|
|
1047
|
+
assert num.allclose(z, answer)
|
|
1048
|
+
assert num.allclose(interp._A_can_be_reused, False)
|
|
1049
|
+
|
|
1050
|
+
#A is recalculated
|
|
1051
|
+
z = interp.interpolate(f)
|
|
1052
|
+
assert num.allclose(z, answer)
|
|
1053
|
+
assert num.allclose(interp._A_can_be_reused, True)
|
|
1054
|
+
|
|
1055
|
+
interp = Interpolate(vertices, triangles)
|
|
1056
|
+
#Must raise an exception, no points specified
|
|
1057
|
+
try:
|
|
1058
|
+
z = interp.interpolate(f)
|
|
1059
|
+
except:
|
|
1060
|
+
pass
|
|
1061
|
+
|
|
1062
|
+
def xxtest_interpolate_reuse_if_same(self):
|
|
1063
|
+
|
|
1064
|
+
# This on tests that repeated identical interpolation
|
|
1065
|
+
# points makes use of precomputed matrix (Ole)
|
|
1066
|
+
# This is not really a test and is disabled for now
|
|
1067
|
+
|
|
1068
|
+
a = [-1.0, 0.0]
|
|
1069
|
+
b = [3.0, 4.0]
|
|
1070
|
+
c = [4.0, 1.0]
|
|
1071
|
+
d = [-3.0, 2.0] #3
|
|
1072
|
+
e = [-1.0, -2.0]
|
|
1073
|
+
f = [1.0, -2.0] #5
|
|
1074
|
+
|
|
1075
|
+
vertices = [a, b, c, d,e,f]
|
|
1076
|
+
triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
|
|
1077
|
+
|
|
1078
|
+
|
|
1079
|
+
point_coords = [[-2.0, 2.0],
|
|
1080
|
+
[-1.0, 1.0],
|
|
1081
|
+
[ 0.0, 2.0],
|
|
1082
|
+
[ 1.0, 1.0],
|
|
1083
|
+
[ 2.0, 1.0],
|
|
1084
|
+
[ 0.0, 0.0],
|
|
1085
|
+
[ 1.0, 0.0],
|
|
1086
|
+
[ 0.0, -1.0],
|
|
1087
|
+
[-0.2, -0.5],
|
|
1088
|
+
[-0.9, -1.5],
|
|
1089
|
+
[ 0.5, -1.9],
|
|
1090
|
+
[ 3.0, 1.0]]
|
|
1091
|
+
|
|
1092
|
+
interp = Interpolate(vertices, triangles)
|
|
1093
|
+
f = num.array([linear_function(vertices), 2*linear_function(vertices)])
|
|
1094
|
+
f = num.transpose(f)
|
|
1095
|
+
z = interp.interpolate(f, point_coords)
|
|
1096
|
+
answer = [linear_function(point_coords),
|
|
1097
|
+
2*linear_function(point_coords) ]
|
|
1098
|
+
answer = num.transpose(answer)
|
|
1099
|
+
|
|
1100
|
+
assert num.allclose(z, answer)
|
|
1101
|
+
assert num.allclose(interp._A_can_be_reused, True)
|
|
1102
|
+
|
|
1103
|
+
|
|
1104
|
+
z = interp.interpolate(f) # None
|
|
1105
|
+
assert num.allclose(z, answer)
|
|
1106
|
+
z = interp.interpolate(f, point_coords) # Repeated (not really a test)
|
|
1107
|
+
assert num.allclose(z, answer)
|
|
1108
|
+
|
|
1109
|
+
|
|
1110
|
+
|
|
1111
|
+
def test_interpolation_interface_time_only(self):
|
|
1112
|
+
|
|
1113
|
+
# Test spatio-temporal interpolation
|
|
1114
|
+
# Test that spatio temporal function performs the correct
|
|
1115
|
+
# interpolations in both time and space
|
|
1116
|
+
|
|
1117
|
+
|
|
1118
|
+
|
|
1119
|
+
#Three timesteps
|
|
1120
|
+
time = [1.0, 5.0, 6.0]
|
|
1121
|
+
|
|
1122
|
+
|
|
1123
|
+
#One quantity
|
|
1124
|
+
Q = num.zeros( (3,6), num.float )
|
|
1125
|
+
|
|
1126
|
+
#Linear in time and space
|
|
1127
|
+
a = [0.0, 0.0]
|
|
1128
|
+
b = [0.0, 2.0]
|
|
1129
|
+
c = [2.0, 0.0]
|
|
1130
|
+
d = [0.0, 4.0]
|
|
1131
|
+
e = [2.0, 2.0]
|
|
1132
|
+
f = [4.0, 0.0]
|
|
1133
|
+
|
|
1134
|
+
points = [a, b, c, d, e, f]
|
|
1135
|
+
|
|
1136
|
+
for i, t in enumerate(time):
|
|
1137
|
+
Q[i, :] = t*linear_function(points)
|
|
1138
|
+
|
|
1139
|
+
|
|
1140
|
+
#Check basic interpolation of one quantity using averaging
|
|
1141
|
+
#(no interpolation points or spatial info)
|
|
1142
|
+
I = Interpolation_function(time, [mean(Q[0,:]),
|
|
1143
|
+
mean(Q[1,:]),
|
|
1144
|
+
mean(Q[2,:])])
|
|
1145
|
+
|
|
1146
|
+
|
|
1147
|
+
|
|
1148
|
+
#Check temporal interpolation
|
|
1149
|
+
for i in [0,1,2]:
|
|
1150
|
+
assert num.allclose(I(time[i]), mean(Q[i,:]))
|
|
1151
|
+
|
|
1152
|
+
#Midway
|
|
1153
|
+
assert num.allclose(I( (time[0] + time[1])/2 ),
|
|
1154
|
+
(I(time[0]) + I(time[1]))/2 )
|
|
1155
|
+
|
|
1156
|
+
assert num.allclose(I( (time[1] + time[2])/2 ),
|
|
1157
|
+
(I(time[1]) + I(time[2]))/2 )
|
|
1158
|
+
|
|
1159
|
+
assert num.allclose(I( (time[0] + time[2])/2 ),
|
|
1160
|
+
(I(time[0]) + I(time[2]))/2 )
|
|
1161
|
+
|
|
1162
|
+
#1/3
|
|
1163
|
+
assert num.allclose(I( (time[0] + time[2])/3 ),
|
|
1164
|
+
(I(time[0]) + I(time[2]))/3 )
|
|
1165
|
+
|
|
1166
|
+
|
|
1167
|
+
#Out of bounds checks
|
|
1168
|
+
try:
|
|
1169
|
+
I(time[0]-1)
|
|
1170
|
+
except:
|
|
1171
|
+
pass
|
|
1172
|
+
else:
|
|
1173
|
+
raise Exception('Should raise exception')
|
|
1174
|
+
|
|
1175
|
+
try:
|
|
1176
|
+
I(time[-1]+1)
|
|
1177
|
+
except:
|
|
1178
|
+
pass
|
|
1179
|
+
else:
|
|
1180
|
+
raise Exception('Should raise exception')
|
|
1181
|
+
|
|
1182
|
+
|
|
1183
|
+
|
|
1184
|
+
|
|
1185
|
+
def test_interpolation_interface_spatial_only(self):
|
|
1186
|
+
# Test spatio-temporal interpolation with constant time
|
|
1187
|
+
|
|
1188
|
+
#Three timesteps
|
|
1189
|
+
time = [1.0, 5.0, 6.0]
|
|
1190
|
+
|
|
1191
|
+
#Setup mesh used to represent fitted function
|
|
1192
|
+
a = [0.0, 0.0]
|
|
1193
|
+
b = [0.0, 2.0]
|
|
1194
|
+
c = [2.0, 0.0]
|
|
1195
|
+
d = [0.0, 4.0]
|
|
1196
|
+
e = [2.0, 2.0]
|
|
1197
|
+
f = [4.0, 0.0]
|
|
1198
|
+
|
|
1199
|
+
points = [a, b, c, d, e, f]
|
|
1200
|
+
#bac, bce, ecf, dbe
|
|
1201
|
+
triangles = [[1,0,2], [1,2,4], [4,2,5], [3,1,4]]
|
|
1202
|
+
|
|
1203
|
+
|
|
1204
|
+
#New datapoints where interpolated values are sought
|
|
1205
|
+
interpolation_points = [[ 0.0, 0.0],
|
|
1206
|
+
[ 0.5, 0.5],
|
|
1207
|
+
[ 0.7, 0.7],
|
|
1208
|
+
[ 1.0, 0.5],
|
|
1209
|
+
[ 2.0, 0.4],
|
|
1210
|
+
[ 2.8, 1.2]]
|
|
1211
|
+
|
|
1212
|
+
|
|
1213
|
+
#One quantity linear in space
|
|
1214
|
+
Q = linear_function(points)
|
|
1215
|
+
|
|
1216
|
+
|
|
1217
|
+
#Check interpolation of one quantity using interpolaton points
|
|
1218
|
+
I = Interpolation_function(time, Q,
|
|
1219
|
+
vertex_coordinates = points,
|
|
1220
|
+
triangles = triangles,
|
|
1221
|
+
interpolation_points = interpolation_points,
|
|
1222
|
+
verbose = False)
|
|
1223
|
+
|
|
1224
|
+
|
|
1225
|
+
answer = linear_function(interpolation_points)
|
|
1226
|
+
|
|
1227
|
+
t = time[0]
|
|
1228
|
+
for j in range(50): #t in [1, 6]
|
|
1229
|
+
for id in range(len(interpolation_points)):
|
|
1230
|
+
assert num.allclose(I(t, id), answer[id])
|
|
1231
|
+
t += 0.1
|
|
1232
|
+
|
|
1233
|
+
try:
|
|
1234
|
+
I(1)
|
|
1235
|
+
except:
|
|
1236
|
+
pass
|
|
1237
|
+
else:
|
|
1238
|
+
raise Exception('Should raise exception')
|
|
1239
|
+
|
|
1240
|
+
|
|
1241
|
+
def test_interpolation_interface(self):
|
|
1242
|
+
# Test spatio-temporal interpolation
|
|
1243
|
+
# Test that spatio temporal function performs the correct
|
|
1244
|
+
# interpolations in both time and space
|
|
1245
|
+
|
|
1246
|
+
#Three timesteps
|
|
1247
|
+
time = [1.0, 5.0, 6.0]
|
|
1248
|
+
|
|
1249
|
+
#Setup mesh used to represent fitted function
|
|
1250
|
+
a = [0.0, 0.0]
|
|
1251
|
+
b = [0.0, 2.0]
|
|
1252
|
+
c = [2.0, 0.0]
|
|
1253
|
+
d = [0.0, 4.0]
|
|
1254
|
+
e = [2.0, 2.0]
|
|
1255
|
+
f = [4.0, 0.0]
|
|
1256
|
+
|
|
1257
|
+
points = [a, b, c, d, e, f]
|
|
1258
|
+
#bac, bce, ecf, dbe
|
|
1259
|
+
triangles = [[1,0,2], [1,2,4], [4,2,5], [3,1,4]]
|
|
1260
|
+
|
|
1261
|
+
|
|
1262
|
+
#New datapoints where interpolated values are sought
|
|
1263
|
+
interpolation_points = [[ 0.0, 0.0],
|
|
1264
|
+
[ 0.5, 0.5],
|
|
1265
|
+
[ 0.7, 0.7],
|
|
1266
|
+
[ 1.0, 0.5],
|
|
1267
|
+
[ 2.0, 0.4],
|
|
1268
|
+
[ 2.8, 1.2]]
|
|
1269
|
+
|
|
1270
|
+
#One quantity
|
|
1271
|
+
Q = num.zeros( (3,6), num.float )
|
|
1272
|
+
|
|
1273
|
+
#Linear in time and space
|
|
1274
|
+
for i, t in enumerate(time):
|
|
1275
|
+
Q[i, :] = t*linear_function(points)
|
|
1276
|
+
|
|
1277
|
+
#Check interpolation of one quantity using interpolaton points)
|
|
1278
|
+
I = Interpolation_function(time, Q,
|
|
1279
|
+
vertex_coordinates = points,
|
|
1280
|
+
triangles = triangles,
|
|
1281
|
+
interpolation_points = interpolation_points,
|
|
1282
|
+
verbose = False)
|
|
1283
|
+
|
|
1284
|
+
answer = linear_function(interpolation_points)
|
|
1285
|
+
|
|
1286
|
+
t = time[0]
|
|
1287
|
+
for j in range(50): #t in [1, 6]
|
|
1288
|
+
for id in range(len(interpolation_points)):
|
|
1289
|
+
assert num.allclose(I(t, id), t*answer[id])
|
|
1290
|
+
t += 0.1
|
|
1291
|
+
|
|
1292
|
+
try:
|
|
1293
|
+
I(1)
|
|
1294
|
+
except:
|
|
1295
|
+
pass
|
|
1296
|
+
else:
|
|
1297
|
+
raise Exception('Should raise exception')
|
|
1298
|
+
|
|
1299
|
+
|
|
1300
|
+
|
|
1301
|
+
def test_interpolation_interface_with_time_thinning(self):
|
|
1302
|
+
# Test spatio-temporal interpolation
|
|
1303
|
+
# Test that spatio temporal function performs the correct
|
|
1304
|
+
# interpolations in both time and space
|
|
1305
|
+
|
|
1306
|
+
# Eight timesteps
|
|
1307
|
+
time = [1.0, 2.0, 4.0, 5.0, 7.0, 8.0, 9.0, 10.0]
|
|
1308
|
+
|
|
1309
|
+
# Setup mesh used to represent fitted function
|
|
1310
|
+
a = [0.0, 0.0]
|
|
1311
|
+
b = [0.0, 2.0]
|
|
1312
|
+
c = [2.0, 0.0]
|
|
1313
|
+
d = [0.0, 4.0]
|
|
1314
|
+
e = [2.0, 2.0]
|
|
1315
|
+
f = [4.0, 0.0]
|
|
1316
|
+
|
|
1317
|
+
points = [a, b, c, d, e, f]
|
|
1318
|
+
# bac, bce, ecf, dbe
|
|
1319
|
+
triangles = [[1,0,2], [1,2,4], [4,2,5], [3,1,4]]
|
|
1320
|
+
|
|
1321
|
+
|
|
1322
|
+
# New datapoints where interpolated values are sought
|
|
1323
|
+
interpolation_points = [[ 0.0, 0.0],
|
|
1324
|
+
[ 0.5, 0.5],
|
|
1325
|
+
[ 0.7, 0.7],
|
|
1326
|
+
[ 1.0, 0.5],
|
|
1327
|
+
[ 2.0, 0.4],
|
|
1328
|
+
[ 2.8, 1.2]]
|
|
1329
|
+
|
|
1330
|
+
# One quantity
|
|
1331
|
+
Q = num.zeros((8,6), num.float)
|
|
1332
|
+
|
|
1333
|
+
# Linear in time and space
|
|
1334
|
+
for i, t in enumerate(time):
|
|
1335
|
+
Q[i, :] = t*linear_function(points)
|
|
1336
|
+
|
|
1337
|
+
# Check interpolation of one quantity using interpolaton points) using default
|
|
1338
|
+
# time_thinning of 1
|
|
1339
|
+
I = Interpolation_function(time, Q,
|
|
1340
|
+
vertex_coordinates=points,
|
|
1341
|
+
triangles=triangles,
|
|
1342
|
+
interpolation_points=interpolation_points,
|
|
1343
|
+
verbose=False)
|
|
1344
|
+
|
|
1345
|
+
answer = linear_function(interpolation_points)
|
|
1346
|
+
|
|
1347
|
+
|
|
1348
|
+
t = time[0]
|
|
1349
|
+
for j in range(90): #t in [1, 10]
|
|
1350
|
+
for id in range(len(interpolation_points)):
|
|
1351
|
+
assert num.allclose(I(t, id), t*answer[id])
|
|
1352
|
+
t += 0.1
|
|
1353
|
+
|
|
1354
|
+
|
|
1355
|
+
# Now check time_thinning
|
|
1356
|
+
I = Interpolation_function(time, Q,
|
|
1357
|
+
vertex_coordinates=points,
|
|
1358
|
+
triangles=triangles,
|
|
1359
|
+
interpolation_points=interpolation_points,
|
|
1360
|
+
time_thinning=2,
|
|
1361
|
+
verbose=False)
|
|
1362
|
+
|
|
1363
|
+
|
|
1364
|
+
assert len(I.time) == 4
|
|
1365
|
+
assert( num.allclose(I.time, [1.0, 4.0, 7.0, 9.0] ))
|
|
1366
|
+
|
|
1367
|
+
answer = linear_function(interpolation_points)
|
|
1368
|
+
|
|
1369
|
+
t = time[0]
|
|
1370
|
+
for j in range(80): #t in [1, 9]
|
|
1371
|
+
for id in range(len(interpolation_points)):
|
|
1372
|
+
assert num.allclose(I(t, id), t*answer[id])
|
|
1373
|
+
t += 0.1
|
|
1374
|
+
|
|
1375
|
+
|
|
1376
|
+
|
|
1377
|
+
def test_interpolation_precompute_points(self):
|
|
1378
|
+
# looking at a discrete mesh
|
|
1379
|
+
#
|
|
1380
|
+
|
|
1381
|
+
#Three timesteps
|
|
1382
|
+
time = [0.0, 60.0]
|
|
1383
|
+
|
|
1384
|
+
#Setup mesh used to represent fitted function
|
|
1385
|
+
points = [[ 15., -20.],
|
|
1386
|
+
[ 15., 10.],
|
|
1387
|
+
[ 0., -20.],
|
|
1388
|
+
[ 0., 10.],
|
|
1389
|
+
[ 0., -20.],
|
|
1390
|
+
[ 15., 10.]]
|
|
1391
|
+
|
|
1392
|
+
triangles = [[0, 1, 2],
|
|
1393
|
+
[3, 4, 5]]
|
|
1394
|
+
|
|
1395
|
+
#New datapoints where interpolated values are sought
|
|
1396
|
+
interpolation_points = [[ 1., 0.], [0.,1.]]
|
|
1397
|
+
|
|
1398
|
+
#One quantity
|
|
1399
|
+
Q = num.zeros( (2,6), num.float )
|
|
1400
|
+
|
|
1401
|
+
#Linear in time and space
|
|
1402
|
+
for i, t in enumerate(time):
|
|
1403
|
+
Q[i, :] = t*linear_function(points)
|
|
1404
|
+
#print "Q", Q
|
|
1405
|
+
|
|
1406
|
+
|
|
1407
|
+
|
|
1408
|
+
interp = Interpolate(points, triangles)
|
|
1409
|
+
f = num.array([linear_function(points),2*linear_function(points)])
|
|
1410
|
+
f = num.transpose(f)
|
|
1411
|
+
#print "f",f
|
|
1412
|
+
z = interp.interpolate(f, interpolation_points)
|
|
1413
|
+
answer = [linear_function(interpolation_points),
|
|
1414
|
+
2*linear_function(interpolation_points) ]
|
|
1415
|
+
answer = num.transpose(answer)
|
|
1416
|
+
#print "z",z
|
|
1417
|
+
#print "answer",answer
|
|
1418
|
+
assert num.allclose(z, answer)
|
|
1419
|
+
|
|
1420
|
+
|
|
1421
|
+
#Check interpolation of one quantity using interpolaton points)
|
|
1422
|
+
I = Interpolation_function(time, Q,
|
|
1423
|
+
vertex_coordinates = points,
|
|
1424
|
+
triangles = triangles,
|
|
1425
|
+
interpolation_points = interpolation_points,
|
|
1426
|
+
verbose = False)
|
|
1427
|
+
|
|
1428
|
+
#print "I.precomputed_values", I.precomputed_values
|
|
1429
|
+
|
|
1430
|
+
msg = 'Interpolation failed'
|
|
1431
|
+
assert num.allclose(I.precomputed_values['Attribute'][1], [60, 60]), msg
|
|
1432
|
+
#self.assertTrue( I.precomputed_values['Attribute'][1] == 60.0,
|
|
1433
|
+
# ' failed')
|
|
1434
|
+
|
|
1435
|
+
def test_interpolation_function_outside_point(self):
|
|
1436
|
+
# Test spatio-temporal interpolation
|
|
1437
|
+
# Test that spatio temporal function performs the correct
|
|
1438
|
+
# interpolations in both time and space
|
|
1439
|
+
|
|
1440
|
+
# Three timesteps
|
|
1441
|
+
time = [1.0, 5.0, 6.0]
|
|
1442
|
+
|
|
1443
|
+
# Setup mesh used to represent fitted function
|
|
1444
|
+
a = [0.0, 0.0]
|
|
1445
|
+
b = [0.0, 2.0]
|
|
1446
|
+
c = [2.0, 0.0]
|
|
1447
|
+
d = [0.0, 4.0]
|
|
1448
|
+
e = [2.0, 2.0]
|
|
1449
|
+
f = [4.0, 0.0]
|
|
1450
|
+
|
|
1451
|
+
points = [a, b, c, d, e, f]
|
|
1452
|
+
#bac, bce, ecf, dbe
|
|
1453
|
+
triangles = [[1,0,2], [1,2,4], [4,2,5], [3,1,4]]
|
|
1454
|
+
|
|
1455
|
+
|
|
1456
|
+
# New datapoints where interpolated values are sought
|
|
1457
|
+
interpolation_points = [[ 0.0, 0.0],
|
|
1458
|
+
[ 0.5, 0.5],
|
|
1459
|
+
[ 0.7, 0.7],
|
|
1460
|
+
[ 1.0, 0.5],
|
|
1461
|
+
[ 2.0, 0.4],
|
|
1462
|
+
[ 545354534, 4354354353]] # outside the mesh
|
|
1463
|
+
|
|
1464
|
+
# One quantity
|
|
1465
|
+
Q = num.zeros( (3,6), num.float )
|
|
1466
|
+
|
|
1467
|
+
# Linear in time and space
|
|
1468
|
+
for i, t in enumerate(time):
|
|
1469
|
+
Q[i, :] = t*linear_function(points)
|
|
1470
|
+
|
|
1471
|
+
# Check interpolation of one quantity using interpolaton points)
|
|
1472
|
+
|
|
1473
|
+
I = Interpolation_function(time, Q,
|
|
1474
|
+
vertex_coordinates = points,
|
|
1475
|
+
triangles = triangles,
|
|
1476
|
+
interpolation_points = interpolation_points,
|
|
1477
|
+
verbose = False)
|
|
1478
|
+
|
|
1479
|
+
|
|
1480
|
+
assert num.alltrue(I.precomputed_values['Attribute'][:,4] != NAN)
|
|
1481
|
+
assert num.sometrue(I.precomputed_values['Attribute'][:,5] == NAN)
|
|
1482
|
+
|
|
1483
|
+
#X = I.precomputed_values['Attribute'][1,:]
|
|
1484
|
+
#print X
|
|
1485
|
+
#print take(X, X == NAN)
|
|
1486
|
+
#print where(X == NAN, range(len(X)), 0)
|
|
1487
|
+
|
|
1488
|
+
answer = linear_function(interpolation_points)
|
|
1489
|
+
|
|
1490
|
+
t = time[0]
|
|
1491
|
+
for j in range(50): #t in [1, 6]
|
|
1492
|
+
for id in range(len(interpolation_points)-1):
|
|
1493
|
+
assert num.allclose(I(t, id), t*answer[id])
|
|
1494
|
+
t += 0.1
|
|
1495
|
+
|
|
1496
|
+
# Now test the point outside the mesh
|
|
1497
|
+
t = time[0]
|
|
1498
|
+
for j in range(50): #t in [1, 6]
|
|
1499
|
+
self.assertTrue(I(t, 5) == NAN, 'Fail!')
|
|
1500
|
+
t += 0.1
|
|
1501
|
+
|
|
1502
|
+
try:
|
|
1503
|
+
I(1)
|
|
1504
|
+
except:
|
|
1505
|
+
pass
|
|
1506
|
+
else:
|
|
1507
|
+
raise Exception('Should raise exception')
|
|
1508
|
+
|
|
1509
|
+
|
|
1510
|
+
def test_interpolation_function_time(self):
|
|
1511
|
+
#Test a long time series with an error in it (this did cause an
|
|
1512
|
+
#error once)
|
|
1513
|
+
|
|
1514
|
+
|
|
1515
|
+
time = num.array(\
|
|
1516
|
+
[0.00000000e+00, 5.00000000e-02, 1.00000000e-01, 1.50000000e-01,
|
|
1517
|
+
2.00000000e-01, 2.50000000e-01, 3.00000000e-01, 3.50000000e-01,
|
|
1518
|
+
4.00000000e-01, 4.50000000e-01, 5.00000000e-01, 5.50000000e-01,
|
|
1519
|
+
6.00000000e-01, 6.50000000e-01, 7.00000000e-01, 7.50000000e-01,
|
|
1520
|
+
8.00000000e-01, 8.50000000e-01, 9.00000000e-01, 9.50000000e-01,
|
|
1521
|
+
1.00000000e-00, 1.05000000e+00, 1.10000000e+00, 1.15000000e+00,
|
|
1522
|
+
1.20000000e+00, 1.25000000e+00, 1.30000000e+00, 1.35000000e+00,
|
|
1523
|
+
1.40000000e+00, 1.45000000e+00, 1.50000000e+00, 1.55000000e+00,
|
|
1524
|
+
1.60000000e+00, 1.65000000e+00, 1.70000000e+00, 1.75000000e+00,
|
|
1525
|
+
1.80000000e+00, 1.85000000e+00, 1.90000000e+00, 1.95000000e+00,
|
|
1526
|
+
2.00000000e+00, 2.05000000e+00, 2.10000000e+00, 2.15000000e+00,
|
|
1527
|
+
2.20000000e+00, 2.25000000e+00, 2.30000000e+00, 2.35000000e+00,
|
|
1528
|
+
2.40000000e+00, 2.45000000e+00, 2.50000000e+00, 2.55000000e+00,
|
|
1529
|
+
2.60000000e+00, 2.65000000e+00, 2.70000000e+00, 2.75000000e+00,
|
|
1530
|
+
2.80000000e+00, 2.85000000e+00, 2.90000000e+00, 2.95000000e+00,
|
|
1531
|
+
3.00000000e+00, 3.05000000e+00, 9.96920997e+36, 3.15000000e+00,
|
|
1532
|
+
3.20000000e+00, 3.25000000e+00, 3.30000000e+00, 3.35000000e+00,
|
|
1533
|
+
3.40000000e+00, 3.45000000e+00, 3.50000000e+00, 3.55000000e+00,
|
|
1534
|
+
3.60000000e+00, 3.65000000e+00, 3.70000000e+00, 3.75000000e+00,
|
|
1535
|
+
3.80000000e+00, 3.85000000e+00, 3.90000000e+00, 3.95000000e+00,
|
|
1536
|
+
4.00000000e+00, 4.05000000e+00, 4.10000000e+00, 4.15000000e+00,
|
|
1537
|
+
4.20000000e+00, 4.25000000e+00, 4.30000000e+00, 4.35000000e+00,
|
|
1538
|
+
4.40000000e+00, 4.45000000e+00, 4.50000000e+00, 4.55000000e+00,
|
|
1539
|
+
4.60000000e+00, 4.65000000e+00, 4.70000000e+00, 4.75000000e+00,
|
|
1540
|
+
4.80000000e+00, 4.85000000e+00, 4.90000000e+00, 4.95000000e+00,
|
|
1541
|
+
5.00000000e+00, 5.05000000e+00, 5.10000000e+00, 5.15000000e+00,
|
|
1542
|
+
5.20000000e+00, 5.25000000e+00, 5.30000000e+00, 5.35000000e+00,
|
|
1543
|
+
5.40000000e+00, 5.45000000e+00, 5.50000000e+00, 5.55000000e+00,
|
|
1544
|
+
5.60000000e+00, 5.65000000e+00, 5.70000000e+00, 5.75000000e+00,
|
|
1545
|
+
5.80000000e+00, 5.85000000e+00, 5.90000000e+00, 5.95000000e+00,
|
|
1546
|
+
6.00000000e+00, 6.05000000e+00, 6.10000000e+00, 6.15000000e+00,
|
|
1547
|
+
6.20000000e+00, 6.25000000e+00, 6.30000000e+00, 6.35000000e+00,
|
|
1548
|
+
6.40000000e+00, 6.45000000e+00, 6.50000000e+00, 6.55000000e+00,
|
|
1549
|
+
6.60000000e+00, 6.65000000e+00, 6.70000000e+00, 6.75000000e+00,
|
|
1550
|
+
6.80000000e+00, 6.85000000e+00, 6.90000000e+00, 6.95000000e+00,
|
|
1551
|
+
7.00000000e+00, 7.05000000e+00, 7.10000000e+00, 7.15000000e+00,
|
|
1552
|
+
7.20000000e+00, 7.25000000e+00, 7.30000000e+00, 7.35000000e+00,
|
|
1553
|
+
7.40000000e+00, 7.45000000e+00, 7.50000000e+00, 7.55000000e+00,
|
|
1554
|
+
7.60000000e+00, 7.65000000e+00, 7.70000000e+00, 7.75000000e+00,
|
|
1555
|
+
7.80000000e+00, 7.85000000e+00, 7.90000000e+00, 7.95000000e+00,
|
|
1556
|
+
8.00000000e+00, 8.05000000e+00, 8.10000000e+00, 8.15000000e+00,
|
|
1557
|
+
8.20000000e+00, 8.25000000e+00, 8.30000000e+00, 8.35000000e+00,
|
|
1558
|
+
8.40000000e+00, 8.45000000e+00, 8.50000000e+00, 8.55000000e+00,
|
|
1559
|
+
8.60000000e+00, 8.65000000e+00, 8.70000000e+00, 8.75000000e+00,
|
|
1560
|
+
8.80000000e+00, 8.85000000e+00, 8.90000000e+00, 8.95000000e+00,
|
|
1561
|
+
9.00000000e+00, 9.05000000e+00, 9.10000000e+00, 9.15000000e+00,
|
|
1562
|
+
9.20000000e+00, 9.25000000e+00, 9.30000000e+00, 9.35000000e+00,
|
|
1563
|
+
9.40000000e+00, 9.45000000e+00, 9.50000000e+00, 9.55000000e+00,
|
|
1564
|
+
9.60000000e+00, 9.65000000e+00, 9.70000000e+00, 9.75000000e+00,
|
|
1565
|
+
9.80000000e+00, 9.85000000e+00, 9.90000000e+00, 9.95000000e+00,
|
|
1566
|
+
1.00000000e+01, 1.00500000e+01, 1.01000000e+01, 1.01500000e+01,
|
|
1567
|
+
1.02000000e+01, 1.02500000e+01, 1.03000000e+01, 1.03500000e+01,
|
|
1568
|
+
1.04000000e+01, 1.04500000e+01, 1.05000000e+01, 1.05500000e+01,
|
|
1569
|
+
1.06000000e+01, 1.06500000e+01, 1.07000000e+01, 1.07500000e+01,
|
|
1570
|
+
1.08000000e+01, 1.08500000e+01, 1.09000000e+01, 1.09500000e+01,
|
|
1571
|
+
1.10000000e+01, 1.10500000e+01, 1.11000000e+01, 1.11500000e+01,
|
|
1572
|
+
1.12000000e+01, 1.12500000e+01, 1.13000000e+01, 1.13500000e+01,
|
|
1573
|
+
1.14000000e+01, 1.14500000e+01, 1.15000000e+01, 1.15500000e+01,
|
|
1574
|
+
1.16000000e+01, 1.16500000e+01, 1.17000000e+01, 1.17500000e+01,
|
|
1575
|
+
1.18000000e+01, 1.18500000e+01, 1.19000000e+01, 1.19500000e+01,
|
|
1576
|
+
1.20000000e+01, 1.20500000e+01, 1.21000000e+01, 1.21500000e+01,
|
|
1577
|
+
1.22000000e+01, 1.22500000e+01, 1.23000000e+01, 1.23500000e+01,
|
|
1578
|
+
1.24000000e+01, 1.24500000e+01, 1.25000000e+01, 1.25500000e+01,
|
|
1579
|
+
1.26000000e+01, 1.26500000e+01, 1.27000000e+01, 1.27500000e+01,
|
|
1580
|
+
1.28000000e+01, 1.28500000e+01, 1.29000000e+01, 1.29500000e+01,
|
|
1581
|
+
1.30000000e+01, 1.30500000e+01, 1.31000000e+01, 1.31500000e+01,
|
|
1582
|
+
1.32000000e+01, 1.32500000e+01, 1.33000000e+01, 1.33500000e+01,
|
|
1583
|
+
1.34000000e+01, 1.34500000e+01, 1.35000000e+01, 1.35500000e+01,
|
|
1584
|
+
1.36000000e+01, 1.36500000e+01, 1.37000000e+01, 1.37500000e+01,
|
|
1585
|
+
1.38000000e+01, 1.38500000e+01, 1.39000000e+01, 1.39500000e+01,
|
|
1586
|
+
1.40000000e+01, 1.40500000e+01, 1.41000000e+01, 1.41500000e+01,
|
|
1587
|
+
1.42000000e+01, 1.42500000e+01, 1.43000000e+01, 1.43500000e+01,
|
|
1588
|
+
1.44000000e+01, 1.44500000e+01, 1.45000000e+01, 1.45500000e+01,
|
|
1589
|
+
1.46000000e+01, 1.46500000e+01, 1.47000000e+01, 1.47500000e+01,
|
|
1590
|
+
1.48000000e+01, 1.48500000e+01, 1.49000000e+01, 1.49500000e+01,
|
|
1591
|
+
1.50000000e+01, 1.50500000e+01, 1.51000000e+01, 1.51500000e+01,
|
|
1592
|
+
1.52000000e+01, 1.52500000e+01, 1.53000000e+01, 1.53500000e+01,
|
|
1593
|
+
1.54000000e+01, 1.54500000e+01, 1.55000000e+01, 1.55500000e+01,
|
|
1594
|
+
1.56000000e+01, 1.56500000e+01, 1.57000000e+01, 1.57500000e+01,
|
|
1595
|
+
1.58000000e+01, 1.58500000e+01, 1.59000000e+01, 1.59500000e+01,
|
|
1596
|
+
1.60000000e+01, 1.60500000e+01, 1.61000000e+01, 1.61500000e+01,
|
|
1597
|
+
1.62000000e+01, 1.62500000e+01, 1.63000000e+01, 1.63500000e+01,
|
|
1598
|
+
1.64000000e+01, 1.64500000e+01, 1.65000000e+01, 1.65500000e+01,
|
|
1599
|
+
1.66000000e+01, 1.66500000e+01, 1.67000000e+01, 1.67500000e+01,
|
|
1600
|
+
1.68000000e+01, 1.68500000e+01, 1.69000000e+01, 1.69500000e+01,
|
|
1601
|
+
1.70000000e+01, 1.70500000e+01, 1.71000000e+01, 1.71500000e+01,
|
|
1602
|
+
1.72000000e+01, 1.72500000e+01, 1.73000000e+01, 1.73500000e+01,
|
|
1603
|
+
1.74000000e+01, 1.74500000e+01, 1.75000000e+01, 1.75500000e+01,
|
|
1604
|
+
1.76000000e+01, 1.76500000e+01, 1.77000000e+01, 1.77500000e+01,
|
|
1605
|
+
1.78000000e+01, 1.78500000e+01, 1.79000000e+01, 1.79500000e+01,
|
|
1606
|
+
1.80000000e+01, 1.80500000e+01, 1.81000000e+01, 1.81500000e+01,
|
|
1607
|
+
1.82000000e+01, 1.82500000e+01, 1.83000000e+01, 1.83500000e+01,
|
|
1608
|
+
1.84000000e+01, 1.84500000e+01, 1.85000000e+01, 1.85500000e+01,
|
|
1609
|
+
1.86000000e+01, 1.86500000e+01, 1.87000000e+01, 1.87500000e+01,
|
|
1610
|
+
1.88000000e+01, 1.88500000e+01, 1.89000000e+01, 1.89500000e+01,
|
|
1611
|
+
1.90000000e+01, 1.90500000e+01, 1.91000000e+01, 1.91500000e+01,
|
|
1612
|
+
1.92000000e+01, 1.92500000e+01, 1.93000000e+01, 1.93500000e+01,
|
|
1613
|
+
1.94000000e+01, 1.94500000e+01, 1.95000000e+01, 1.95500000e+01,
|
|
1614
|
+
1.96000000e+01, 1.96500000e+01, 1.97000000e+01, 1.97500000e+01,
|
|
1615
|
+
1.98000000e+01, 1.98500000e+01, 1.99000000e+01, 1.99500000e+01,
|
|
1616
|
+
2.00000000e+01, 2.00500000e+01, 2.01000000e+01, 2.01500000e+01,
|
|
1617
|
+
2.02000000e+01, 2.02500000e+01, 2.03000000e+01, 2.03500000e+01,
|
|
1618
|
+
2.04000000e+01, 2.04500000e+01, 2.05000000e+01, 2.05500000e+01,
|
|
1619
|
+
2.06000000e+01, 2.06500000e+01, 2.07000000e+01, 2.07500000e+01,
|
|
1620
|
+
2.08000000e+01, 2.08500000e+01, 2.09000000e+01, 2.09500000e+01,
|
|
1621
|
+
2.10000000e+01, 2.10500000e+01, 2.11000000e+01, 2.11500000e+01,
|
|
1622
|
+
2.12000000e+01, 2.12500000e+01, 2.13000000e+01, 2.13500000e+01,
|
|
1623
|
+
2.14000000e+01, 2.14500000e+01, 2.15000000e+01, 2.15500000e+01,
|
|
1624
|
+
2.16000000e+01, 2.16500000e+01, 2.17000000e+01, 2.17500000e+01,
|
|
1625
|
+
2.18000000e+01, 2.18500000e+01, 2.19000000e+01, 2.19500000e+01,
|
|
1626
|
+
2.20000000e+01, 2.20500000e+01, 2.21000000e+01, 2.21500000e+01,
|
|
1627
|
+
2.22000000e+01, 2.22500000e+01, 2.23000000e+01, 2.23500000e+01,
|
|
1628
|
+
2.24000000e+01, 2.24500000e+01, 2.25000000e+01])
|
|
1629
|
+
|
|
1630
|
+
#print 'Diff', time[1:] - time[:-1]
|
|
1631
|
+
|
|
1632
|
+
#Setup mesh used to represent fitted function
|
|
1633
|
+
a = [0.0, 0.0]
|
|
1634
|
+
b = [0.0, 2.0]
|
|
1635
|
+
c = [2.0, 0.0]
|
|
1636
|
+
d = [0.0, 4.0]
|
|
1637
|
+
e = [2.0, 2.0]
|
|
1638
|
+
f = [4.0, 0.0]
|
|
1639
|
+
|
|
1640
|
+
points = [a, b, c, d, e, f]
|
|
1641
|
+
#bac, bce, ecf, dbe
|
|
1642
|
+
triangles = [[1,0,2], [1,2,4], [4,2,5], [3,1,4]]
|
|
1643
|
+
|
|
1644
|
+
|
|
1645
|
+
#New datapoints where interpolated values are sought
|
|
1646
|
+
interpolation_points = [[ 0.0, 0.0],
|
|
1647
|
+
[ 0.5, 0.5],
|
|
1648
|
+
[ 0.7, 0.7],
|
|
1649
|
+
[ 1.0, 0.5],
|
|
1650
|
+
[ 2.0, 0.4],
|
|
1651
|
+
[ 545354534, 4354354353]] # outside the mesh
|
|
1652
|
+
|
|
1653
|
+
#One quantity
|
|
1654
|
+
Q = num.zeros( (len(time),6), num.float )
|
|
1655
|
+
|
|
1656
|
+
#Linear in time and space
|
|
1657
|
+
for i, t in enumerate(time):
|
|
1658
|
+
Q[i, :] = t*linear_function(points)
|
|
1659
|
+
|
|
1660
|
+
#Check interpolation of one quantity using interpolaton points)
|
|
1661
|
+
try:
|
|
1662
|
+
I = Interpolation_function(time, Q,
|
|
1663
|
+
vertex_coordinates = points,
|
|
1664
|
+
triangles = triangles,
|
|
1665
|
+
interpolation_points = interpolation_points,
|
|
1666
|
+
verbose = False)
|
|
1667
|
+
except:
|
|
1668
|
+
pass
|
|
1669
|
+
else:
|
|
1670
|
+
raise Exception('Should raise exception due to time being non-monotoneous')
|
|
1671
|
+
|
|
1672
|
+
|
|
1673
|
+
def test_points_outside_the_polygon(self):
|
|
1674
|
+
a = [-1.0, 0.0]
|
|
1675
|
+
b = [3.0, 4.0]
|
|
1676
|
+
c = [4.0, 1.0]
|
|
1677
|
+
d = [-3.0, 2.0] #3
|
|
1678
|
+
e = [-1.0, -2.0]
|
|
1679
|
+
f = [1.0, -2.0] #5
|
|
1680
|
+
|
|
1681
|
+
vertices = [a, b, c, d,e,f]
|
|
1682
|
+
triangles = [[0,1,3], [1,0,2], [0,4,5], [0,5,2]] #abd bac aef afc
|
|
1683
|
+
|
|
1684
|
+
point_coords = [[-2.0, 2.0],
|
|
1685
|
+
[-1.0, 1.0],
|
|
1686
|
+
[9999.0, 9999.0], # point Outside poly
|
|
1687
|
+
[-9999.0, 1.0], # point Outside poly
|
|
1688
|
+
[2.0, 1.0],
|
|
1689
|
+
[0.0, 0.0],
|
|
1690
|
+
[1.0, 0.0],
|
|
1691
|
+
[0.0, -1.0],
|
|
1692
|
+
[-0.2, -0.5],
|
|
1693
|
+
[-0.9, -1.5],
|
|
1694
|
+
[0.5, -1.9],
|
|
1695
|
+
[999999, 9999999]] # point Outside poly
|
|
1696
|
+
geo_data = Geospatial_data(data_points = point_coords)
|
|
1697
|
+
|
|
1698
|
+
interp = Interpolate(vertices, triangles)
|
|
1699
|
+
f = num.array([linear_function(vertices),2*linear_function(vertices)])
|
|
1700
|
+
f = num.transpose(f)
|
|
1701
|
+
#print "f",f
|
|
1702
|
+
z = interp.interpolate(f, geo_data)
|
|
1703
|
+
#z = interp.interpolate(f, point_coords)
|
|
1704
|
+
answer = [linear_function(point_coords),
|
|
1705
|
+
2*linear_function(point_coords) ]
|
|
1706
|
+
answer = num.transpose(answer)
|
|
1707
|
+
answer[2,:] = [NAN, NAN]
|
|
1708
|
+
answer[3,:] = [NAN, NAN]
|
|
1709
|
+
answer[11,:] = [NAN, NAN]
|
|
1710
|
+
#print "z",z
|
|
1711
|
+
#print "answer _ fixed",answer
|
|
1712
|
+
assert num.allclose(z[0:1], answer[0:1])
|
|
1713
|
+
assert num.allclose(z[4:10], answer[4:10])
|
|
1714
|
+
for i in [2,3,11]:
|
|
1715
|
+
self.assertTrue( z[i,1] == answer[11,1], 'Fail!')
|
|
1716
|
+
self.assertTrue( z[i,0] == answer[11,0], 'Fail!')
|
|
1717
|
+
|
|
1718
|
+
|
|
1719
|
+
|
|
1720
|
+
|
|
1721
|
+
def test_points_in_hole(self):
|
|
1722
|
+
|
|
1723
|
+
v0 = [0.0, 0.0]
|
|
1724
|
+
v1 = [1.0/3.0, 0.0]
|
|
1725
|
+
v2 = [2.0/3.0, 0.0]
|
|
1726
|
+
v3 = [1.0, 0.0]
|
|
1727
|
+
v4 = [0.0, 1.0/3.0]
|
|
1728
|
+
v5 = [1.0/3.0, 1.0/3.0]
|
|
1729
|
+
v6 = [2.0/3.0, 1.0/3.0]
|
|
1730
|
+
v7 = [1.0, 1.0/3.0]
|
|
1731
|
+
v8 = [0.0, 2.0/3.0]
|
|
1732
|
+
v9 = [1.0/3.0, 2.0/3.0]
|
|
1733
|
+
v10 = [2.0/3.0, 2.0/3.0]
|
|
1734
|
+
v11 = [1.0, 2.0/3.0]
|
|
1735
|
+
v12 = [0.0, 1.0]
|
|
1736
|
+
v13 = [1.0/3.0, 1.0]
|
|
1737
|
+
v14 = [2.0/3.0, 1.0]
|
|
1738
|
+
v15 = [1.0, 1.0]
|
|
1739
|
+
|
|
1740
|
+
|
|
1741
|
+
vertices = [v0, v1, v2, v3, v4, v5, v6, v7, v8, v9, v10, v11, v12, v13, v14, v15]
|
|
1742
|
+
|
|
1743
|
+
triangles = [[1,4,0], [1,5,4], [2,5,1], [2,6,5], [3,6,2], [3,7,6],
|
|
1744
|
+
[5,8,4], [5,9,8], [7,10,6], [7,11,10],
|
|
1745
|
+
[9,12,8], [9,13,12], [10,13,9], [10,14,13], [11,14,10], [11,15,14]]
|
|
1746
|
+
|
|
1747
|
+
|
|
1748
|
+
|
|
1749
|
+
|
|
1750
|
+
point_coords = [[0.25, 0.25],
|
|
1751
|
+
[0.25, 0.2],
|
|
1752
|
+
[10.0, 12.0], # point Outside poly
|
|
1753
|
+
[0.5, 0.5], # point in hole
|
|
1754
|
+
[0.5, 0.4], # point in hole
|
|
1755
|
+
[0.0, 0.0],
|
|
1756
|
+
[1.0, 0.0]]
|
|
1757
|
+
|
|
1758
|
+
geo_data = Geospatial_data(data_points = point_coords)
|
|
1759
|
+
|
|
1760
|
+
interp = Interpolate(vertices, triangles)
|
|
1761
|
+
f = num.array([linear_function(vertices),2*linear_function(vertices)])
|
|
1762
|
+
f = num.transpose(f)
|
|
1763
|
+
#print "f",f
|
|
1764
|
+
z = interp.interpolate(f, geo_data)
|
|
1765
|
+
#z = interp.interpolate(f, point_coords)
|
|
1766
|
+
answer = [linear_function(point_coords),
|
|
1767
|
+
2*linear_function(point_coords) ]
|
|
1768
|
+
answer = num.transpose(answer)
|
|
1769
|
+
answer[2,:] = [NAN, NAN]
|
|
1770
|
+
answer[3,:] = [NAN, NAN]
|
|
1771
|
+
answer[4,:] = [NAN, NAN]
|
|
1772
|
+
#print "z",z
|
|
1773
|
+
#print "answer _ fixed",answer
|
|
1774
|
+
assert num.allclose(z[0:1], answer[0:1])
|
|
1775
|
+
assert num.allclose(z[5:6], answer[5:6])
|
|
1776
|
+
for i in [2,3,4]:
|
|
1777
|
+
self.assertTrue( z[i,1] == answer[2,1], 'Fail!')
|
|
1778
|
+
self.assertTrue( z[i,0] == answer[2,0], 'Fail!')
|
|
1779
|
+
|
|
1780
|
+
|
|
1781
|
+
def test_interpolate_sww2csv(self):
|
|
1782
|
+
|
|
1783
|
+
def elevation_function(x, y):
|
|
1784
|
+
return -x
|
|
1785
|
+
|
|
1786
|
+
# Create mesh
|
|
1787
|
+
mesh_file = tempfile.mktemp(".tsh")
|
|
1788
|
+
points = [[0.0,0.0],[6.0,0.0],[6.0,6.0],[0.0,6.0]]
|
|
1789
|
+
m = Mesh()
|
|
1790
|
+
m.add_vertices(points)
|
|
1791
|
+
m.auto_segment()
|
|
1792
|
+
m.generate_mesh(verbose=False)
|
|
1793
|
+
m.export_mesh_file(mesh_file)
|
|
1794
|
+
|
|
1795
|
+
# Create shallow water domain
|
|
1796
|
+
domain = Domain(mesh_file)
|
|
1797
|
+
os.remove(mesh_file)
|
|
1798
|
+
|
|
1799
|
+
domain.default_order = 2
|
|
1800
|
+
|
|
1801
|
+
# This test was made before tight_slope_limiters were introduced
|
|
1802
|
+
# Since were are testing interpolation values this is OK
|
|
1803
|
+
domain.tight_slope_limiters = 0
|
|
1804
|
+
|
|
1805
|
+
# Set some field values
|
|
1806
|
+
domain.set_quantity('elevation', elevation_function)
|
|
1807
|
+
domain.set_quantity('friction', 0.03)
|
|
1808
|
+
domain.set_quantity('xmomentum', 3.0)
|
|
1809
|
+
domain.set_quantity('ymomentum', 4.0)
|
|
1810
|
+
|
|
1811
|
+
######################
|
|
1812
|
+
# Boundary conditions
|
|
1813
|
+
B = anuga.Transmissive_boundary(domain)
|
|
1814
|
+
domain.set_boundary( {'exterior': B})
|
|
1815
|
+
|
|
1816
|
+
# This call mangles the stage values.
|
|
1817
|
+
domain.distribute_to_vertices_and_edges()
|
|
1818
|
+
domain.set_quantity('stage', 1.0)
|
|
1819
|
+
|
|
1820
|
+
|
|
1821
|
+
domain.set_name('datatest' + str(time.time()))
|
|
1822
|
+
domain.smooth = True
|
|
1823
|
+
domain.reduction = mean
|
|
1824
|
+
|
|
1825
|
+
sww = SWW_file(domain)
|
|
1826
|
+
sww.store_connectivity()
|
|
1827
|
+
sww.store_timestep()
|
|
1828
|
+
domain.set_quantity('stage', 10.0) # This is automatically limited
|
|
1829
|
+
# So it will not be less than the elevation
|
|
1830
|
+
domain.time = 2.
|
|
1831
|
+
sww.store_timestep()
|
|
1832
|
+
|
|
1833
|
+
# Test the function
|
|
1834
|
+
points = [[5.0,1.],[0.5,2.]]
|
|
1835
|
+
depth_file = tempfile.mktemp(".csv")
|
|
1836
|
+
velocity_x_file = tempfile.mktemp(".csv")
|
|
1837
|
+
velocity_y_file = tempfile.mktemp(".csv")
|
|
1838
|
+
interpolate_sww2csv(sww.filename, points, depth_file,
|
|
1839
|
+
velocity_x_file,
|
|
1840
|
+
velocity_y_file,
|
|
1841
|
+
verbose=False)
|
|
1842
|
+
|
|
1843
|
+
depth_answers_array = [[0.0, 6.0, 1.5], [2.0, 15., 10.5]]
|
|
1844
|
+
velocity_x_answers_array = [[0.0, 3./6.0, 3./1.5],
|
|
1845
|
+
[2.0, 3./15., 3/10.5]]
|
|
1846
|
+
velocity_y_answers_array = [[0.0, 4./6.0, 4./1.5],
|
|
1847
|
+
[2.0, 4./15., 4./10.5]]
|
|
1848
|
+
depth_file_handle = file(depth_file)
|
|
1849
|
+
depth_reader = csv.reader(depth_file_handle)
|
|
1850
|
+
depth_reader.next()
|
|
1851
|
+
velocity_x_file_handle = file(velocity_x_file)
|
|
1852
|
+
velocity_x_reader = csv.reader(velocity_x_file_handle)
|
|
1853
|
+
velocity_x_reader.next()
|
|
1854
|
+
for depths, velocitys, depth_answers, velocity_answers in map(None,
|
|
1855
|
+
depth_reader,
|
|
1856
|
+
velocity_x_reader,
|
|
1857
|
+
depth_answers_array,
|
|
1858
|
+
velocity_x_answers_array):
|
|
1859
|
+
for i in range(len(depths)):
|
|
1860
|
+
#print "depths",depths[i]
|
|
1861
|
+
#print "depth_answers",depth_answers[i]
|
|
1862
|
+
#print "velocitys",velocitys[i]
|
|
1863
|
+
#print "velocity_answers_array", velocity_answers[i]
|
|
1864
|
+
msg = 'Interpolation failed'
|
|
1865
|
+
assert num.allclose(float(depths[i]), depth_answers[i]), msg
|
|
1866
|
+
assert num.allclose(float(velocitys[i]), velocity_answers[i]), msg
|
|
1867
|
+
|
|
1868
|
+
velocity_y_file_handle = file(velocity_y_file)
|
|
1869
|
+
velocity_y_reader = csv.reader(velocity_y_file_handle)
|
|
1870
|
+
velocity_y_reader.next()
|
|
1871
|
+
for velocitys, velocity_answers in map(None,
|
|
1872
|
+
velocity_y_reader,
|
|
1873
|
+
velocity_y_answers_array):
|
|
1874
|
+
for i in range(len(depths)):
|
|
1875
|
+
#print "depths",depths[i]
|
|
1876
|
+
#print "depth_answers",depth_answers[i]
|
|
1877
|
+
#print "velocitys",velocitys[i]
|
|
1878
|
+
#print "velocity_answers_array", velocity_answers[i]
|
|
1879
|
+
msg = 'Interpolation failed'
|
|
1880
|
+
assert num.allclose(float(depths[i]), depth_answers[i]), msg
|
|
1881
|
+
assert num.allclose(float(velocitys[i]), velocity_answers[i]), msg
|
|
1882
|
+
|
|
1883
|
+
# clean up
|
|
1884
|
+
depth_file_handle.close()
|
|
1885
|
+
velocity_y_file_handle.close()
|
|
1886
|
+
velocity_x_file_handle.close()
|
|
1887
|
+
#print "sww.filename",sww.filename
|
|
1888
|
+
os.remove(sww.filename)
|
|
1889
|
+
os.remove(depth_file)
|
|
1890
|
+
os.remove(velocity_x_file)
|
|
1891
|
+
os.remove(velocity_y_file)
|
|
1892
|
+
|
|
1893
|
+
|
|
1894
|
+
def test_interpolate_one_point_many_triangles(self):
|
|
1895
|
+
z0 = [2.0, 5.0]
|
|
1896
|
+
|
|
1897
|
+
v0 = [0.0, 0.0]
|
|
1898
|
+
v1 = [1.0, 0.0]
|
|
1899
|
+
v2 = [2.0, 0.0]
|
|
1900
|
+
v3 = [3.0, 0.0]
|
|
1901
|
+
v4 = [4.0, 0.0]
|
|
1902
|
+
v5 = [5.0, 0.0]
|
|
1903
|
+
v6 = [6.0, 0.0]
|
|
1904
|
+
v7 = [0.0, 10.0]
|
|
1905
|
+
v8 = [1.0, 10.0]
|
|
1906
|
+
v9 = [2.0, 10.0]
|
|
1907
|
+
v10= [3.0, 10.0]
|
|
1908
|
+
v11= [4.0, 10.0]
|
|
1909
|
+
v12= [5.0, 10.0]
|
|
1910
|
+
v13= [6.0, 10.0]
|
|
1911
|
+
|
|
1912
|
+
vertices = [z0,v0, v1, v2, v3,v4 ,v5, v6, v7, v8, v9, v10, v11,
|
|
1913
|
+
v12, v13]
|
|
1914
|
+
triangles = [
|
|
1915
|
+
[0,1,2],
|
|
1916
|
+
[0,2,3],
|
|
1917
|
+
[0,3,4],
|
|
1918
|
+
[0,4,5],
|
|
1919
|
+
[0,5,6],
|
|
1920
|
+
[0,6,7],
|
|
1921
|
+
[0,9,8],
|
|
1922
|
+
[0,10,9],
|
|
1923
|
+
[0,11,10],
|
|
1924
|
+
[0,12,11],
|
|
1925
|
+
[0,13,12],
|
|
1926
|
+
[0,14,13]
|
|
1927
|
+
]
|
|
1928
|
+
|
|
1929
|
+
d0 = [1.0, 1.0]
|
|
1930
|
+
d1 = [1.0, 2.0]
|
|
1931
|
+
d2 = [3.0, 1.0]
|
|
1932
|
+
point_coords = [ d0, d1, d2]
|
|
1933
|
+
try:
|
|
1934
|
+
interp = Interpolate(vertices, triangles)
|
|
1935
|
+
except RuntimeError:
|
|
1936
|
+
self.assertTrue(0 ==1, 'quad fails with 14 verts at the same \
|
|
1937
|
+
position. Should be able to handle any number.')
|
|
1938
|
+
f = linear_function(vertices)
|
|
1939
|
+
z = interp.interpolate(f, point_coords)
|
|
1940
|
+
answer = linear_function(point_coords)
|
|
1941
|
+
|
|
1942
|
+
#print "z",z
|
|
1943
|
+
#print "answer",answer
|
|
1944
|
+
assert num.allclose(z, answer)
|
|
1945
|
+
|
|
1946
|
+
################################################################################
|
|
1947
|
+
|
|
1948
|
+
if __name__ == "__main__":
|
|
1949
|
+
suite = unittest.makeSuite(Test_Interpolate,'test')
|
|
1950
|
+
runner = unittest.TextTestRunner() #verbosity=1)
|
|
1951
|
+
runner.run(suite)
|
|
1952
|
+
|