anuga 1.3.5__zip
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__config__.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__config__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__init__.py +363 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__metadata__.py +6 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__metadata__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/__init__.py +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/ermapper_grids.py +251 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/ermapper_grids.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/file_function.py +483 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/file_function.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/gauge.py +1080 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/gauge.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/general_mesh.py +865 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/general_mesh.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_boundary_conditions.py +862 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_boundary_conditions.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_domain.py +2274 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_domain.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory.py +1011 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh.py +1488 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_table_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain.py +299 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity.py +2162 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/region.py +321 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/region.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/setup.py +48 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tag_region.py +167 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tag_region.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/show_balanced_limiters.py +87 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_ermapper.py +189 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_gauge.py +539 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_general_mesh.py +517 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_generic_boundary_conditions.py +439 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_generic_domain.py +907 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_ghost.py +52 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_neighbour_mesh.py +1854 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_pmesh2domain.py +219 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_quantity.py +2859 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_region.py +99 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_tag_region.py +258 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_util.py +1632 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/util.py +928 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/util.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/__init__.py +12 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection.py +298 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/setup.py +27 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/tests/test_advection.py +183 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/__init__.py +4 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/alpha_shape.py +654 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/alpha_shape.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/tests/test_alpha_shape.py +402 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/anuga_exceptions.py +46 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/anuga_exceptions.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/__init__.py +18 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/caching.py +2531 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/caching.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/dummy_classes_for_testing.py +20 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/dummy_classes_for_testing.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/tests/test_caching.py +895 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/compile_all.py +82 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/compile_all.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/config.py +273 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/config.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/__init__.py +6 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/geo_reference.py +478 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/geo_reference.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/lat_long_UTM_conversion.py +250 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/lat_long_UTM_conversion.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/point.py +128 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/point.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/redfearn.py +233 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/redfearn.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points.csv +11 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z53.csv +11 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z53.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z54.csv +11 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z54.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/redfearn.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/redfearn.xls +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_geo_reference.py +716 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_lat_long_UTM_conversion.py +126 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_point.py +125 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_redfearn.py +508 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/__init__.py +9 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_class.py +1627 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_class.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_polygons.py +114 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_polygons.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_routines.py +362 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_routines.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/new_culvert_class.py +1630 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/new_culvert_class.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/culvert_polygons_example.py +38 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve.csv +20 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve2.csv +20 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve2.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/unittests.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/unittests.xls +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/run_culvert_flat_water_lev.py +173 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_class.py +812 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_polygons.py +84 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines.py +586 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_box_10pct.py +342 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_box_1pct.py +342 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_pipe_10pct.py +338 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_pipe_1pct.py +338 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_new_culvert_class.py +810 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/__init__.py +9 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/exposure.py +223 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/exposure.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/inundation_damage.py +467 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/inundation_damage.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/test_exposure.py +325 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/test_inundation_damage.py +610 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/error_api.py +130 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/error_api.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/extras.py +193 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/extras.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/__init__.py +54 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/csv_file.py +399 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/csv_file.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/mux.py +120 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/mux.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/netcdf.py +266 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/netcdf.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/pts.py +29 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/pts.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/setup.py +27 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sts.py +293 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sts.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sww.py +1552 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sww.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_csv.py +413 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_mux.py +1539 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_read_sww.py +350 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_sww.py +560 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_ungenerate.py +283 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_urs.py +217 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/ungenerate.py +92 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/ungenerate.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/urs.py +323 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/urs.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/urs_ext.pyd +0 -0
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import os
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from anuga import barrier, numprocs, myid
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import numpy
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class RiverWall:
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"""Define the elevation of 'riverwalls'.
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These are located along each cell edge, and can have an elevation different
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from the bed elevation.
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For the DE algorithms, they are used in computing the 'z_half' value [if they
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are greater than either edge elevation].
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In addition, the DE fluxes at riverwalls are adjusted to agree with a weir relation,
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so long as the riverwall is not too deeply submerged.
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As of 22/04/2014, they are only implemented for DE algorithms [the shallow water
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component would be more difficult to implement with other algorithms]
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How the flux over the riverwall is computed:
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# We have a riverwall, which is treated as a weir.
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#
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# Say the headwater-head is the upstream water depth above the weir elevation (min 0), and
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# the tailwater head is the downstream water depth above the weir elevation (min 0).
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# By definition headwater-head > tailwater-head.
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#
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# Let s = (headwater head) / (tailwater head), and h = (tailwater head)/(weir height)
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# where 'weir height' is the elevation of the weir crest above the minimum
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# of the left/right bed elevations
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#
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# Denote ID as the 'ideal' weir flow, computed from the hydraulic
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# formula (including a submergence correction factor from Villemonte,
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# 1947),
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# Q1 = 2/3*headwater_head*sqrt(g*2/3*headwater_head)*Qfactor
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# Q2 = 2/3*tailwater_head*sqrt(g*2/3*headwater_head)*Qfactor
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# ID = Q1*(1-Q2/Q1)**0.385
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#
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# Denote SW as the 'shallow-water' weir flux, computed from the approximate
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# reimann solver, where the mid-edge-elevation is the weir crest elevation.
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# This makes clear sense for DE0 and DE1. Cell centroid stage/height/bed_elevation
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# are used in the flux computation
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#
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# Then the flux over the weir is computed from:
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# w1 = min( max(s-s1, 0.)/(s2-s1), 1.0) # Factor describing relative submergence
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# w1' = min( max(h-h1,0.)/(h2-h1), 1.0) # Factor describing absolute submergence
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# flux_over_weir = (w1*SW + (1-w1)*ID)*( 1-w1') + (w1')*SW
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# where s1, s2, h1, h2 are user defined parameters
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#
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# The key idea is that if s<s1, h<h1, then the ideal weir solution is
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# used. Otherwise, we linearly blend with the SW solution,
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# and the SW solution is used completely if s>s2 or h>h2
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"""
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def __init__(self, domain):
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"""Riverwall data structure
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Allows reasonably efficient storage of riverwall elevations and hydraulic
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properties
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NOTE: In domain.edge_flux_type, riverwalls correspond to the value 1
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RiverWall variables are initialised to dummy values, because even
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if no riverwalls are used, some values have to be passed to the flux computation
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Hydraulic parameters are
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Qfactor -- Multiplicative factor for ideal weir relation (calibration coef)
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s1 -- Submergence ratio at which we start blending with the shallow water solution (<s2)
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s2 -- Submergence ratio at which we entirely use the shallow water solution (>s1)
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h1 -- Tailwater head / weir height at which we start blending with the shallow water solution (<h2)
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h2 -- Tailwater head / weir height at which we entirely use the shallow water solution (>h1)
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# Default riverwall hydraulic parameters
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default_riverwallPar={'Qfactor':1.0,
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's1': 0.9,
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's2': 0.95,
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'h1': 1.0,
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'h2': 1.5
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}
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Other variables are:
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riverwall_elevation -- Variable to hold riverwall elevations.
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len = number of riverwall edges in the domain.
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First entry corresponds to first riverwall edge in domain.edge_coordinates,
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second entry to second riverwall edge in domain.edge_coordinates, etc
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hydraulic_properties_rowIndex -- Variable to hold the row-index of the hydraulic properties table
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len = number of riverwall edges
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in the domain, ordered like riverwall_elevation
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riverwall_edges -- Holds indices of edges in domain which are riverwalls, ordered like riverwall_elevation
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names -- list with the names of the riverwalls
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len = number of riverwalls which cover edges in the domain
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96
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+
|
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97
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+
hydraulic_variable_names -- Variables to hold the names of variables in columns of the hydraulic
|
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98
|
+
properties table. THE ORDER IS IMPORTANT -- C code ASSUMES IT
|
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99
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+
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100
|
+
ncol_hydraulic_properties -- Number of columns in the hydraulic properties table
|
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101
|
+
[ = len(hydraulic_variable_names) ]
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+
|
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103
|
+
hydraulic_properties -- Array with the hydraulic parameters for each riverwall.
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104
|
+
number of rows = number of riverwalls which cover edges in the domain
|
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105
|
+
number of cols = number of hydraulic variable names
|
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106
|
+
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107
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+
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108
|
+
input_riverwall_geo, input_riverwall_par -- holds input information
|
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109
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+
|
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110
|
+
"""
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111
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+
self.domain=domain
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112
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+
|
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113
|
+
default_float=-9.0e+20
|
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114
|
+
default_int=-9e+20
|
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115
|
+
self.riverwall_elevation=numpy.array([default_float])
|
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116
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+
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117
|
+
self.hydraulic_properties_rowIndex=numpy.array([default_int])
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118
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+
|
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119
|
+
self.names=[ ]
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120
|
+
|
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121
|
+
# Default riverwall hydraulic parameters
|
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122
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+
self.default_riverwallPar={'Qfactor':1.0,
|
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123
|
+
's1': 0.9,
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124
|
+
's2': 0.95,
|
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125
|
+
'h1': 1.0,
|
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126
|
+
'h2': 1.5
|
|
127
|
+
}
|
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128
|
+
|
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129
|
+
# DO NOT CHANGE THE ORDER OF hydraulic_variable_names
|
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130
|
+
# It needs to match hard-coded assumptions in C [compute_fluxes_central]
|
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131
|
+
# If you add a variable, append it to the end of hydraulic_variable_names
|
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132
|
+
self.hydraulic_variable_names=('Qfactor', 's1', 's2', 'h1', 'h2')
|
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133
|
+
|
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134
|
+
self.ncol_hydraulic_properties=len(self.hydraulic_variable_names)
|
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135
|
+
# Variable to hold the riverwall hydraulic properties in a table
|
|
136
|
+
# number of rows = number of riverwalls which cover edges in the domain
|
|
137
|
+
# number of cols = number of hydraulic variable names
|
|
138
|
+
self.hydraulic_properties=numpy.array([ [default_float] ])
|
|
139
|
+
|
|
140
|
+
# Variable to hold the indices of riverwall edges
|
|
141
|
+
# len = number of riverwall edges in the domain
|
|
142
|
+
self.riverwall_edges=numpy.array([default_int])
|
|
143
|
+
|
|
144
|
+
# Input info
|
|
145
|
+
self.input_riverwall_geo=None
|
|
146
|
+
self.input_riverwallPar=None
|
|
147
|
+
|
|
148
|
+
|
|
149
|
+
def create_riverwalls(self, riverwalls, riverwallPar={ },
|
|
150
|
+
default_riverwallPar={ },
|
|
151
|
+
tol=1.0e-4, verbose=True,
|
|
152
|
+
output_dir=None):
|
|
153
|
+
"""Add riverwalls at chosen locations along the mesh
|
|
154
|
+
|
|
155
|
+
As of 22/04/2014, these only work with DE algorithms [for which the concept is natural]
|
|
156
|
+
|
|
157
|
+
The walls MUST EXACTLY COINCIDE with edges along the mesh
|
|
158
|
+
|
|
159
|
+
You can force the mesh to do this by passing riverwalls.values()
|
|
160
|
+
to the 'breaklines' argument in the function create_mesh_from_regions. You
|
|
161
|
+
may also need to set the maximum_triangle_area for regions, if the breaklines
|
|
162
|
+
split the region. Do this with the regionPtArea argument in
|
|
163
|
+
create_mesh_from_regions.
|
|
164
|
+
|
|
165
|
+
As of 22/04/2014, the computational method used here is very 'brute-force'
|
|
166
|
+
For each segment on each riverwall, every point in the mesh is checked to see
|
|
167
|
+
if it is on the segment. A possibly faster/less memory method would be to
|
|
168
|
+
'walk' through connected edges on the mesh.
|
|
169
|
+
|
|
170
|
+
Inputs:
|
|
171
|
+
riverwalls: Dictionary of '3D polygons', containing xyz locations of named riverwalls.
|
|
172
|
+
|
|
173
|
+
exampleRiverWalls = { # Left bank n1 --
|
|
174
|
+
'n1': [[1.0, 1000., 2.],
|
|
175
|
+
[1.0, 50., 3.]],
|
|
176
|
+
# Left bank n2
|
|
177
|
+
'n2': [[2.0, 30., 1.0],
|
|
178
|
+
[3.0, 20., 2.],
|
|
179
|
+
[2.5, 15., 1.5]]
|
|
180
|
+
}
|
|
181
|
+
|
|
182
|
+
riverwallPar: Dictionary containing a dictionary of named hydraulic parameters for each named riverwall
|
|
183
|
+
If parameters are not provided, default values will be used.
|
|
184
|
+
See the help for class 'RiverWall' for an explanation of these
|
|
185
|
+
|
|
186
|
+
exampleRiverWallPar = {'n2': {'Qfactor':0.5} }
|
|
187
|
+
This would use a Qfactor of 0.5 for riverwall 'n2', while the other riverwall would have the default values
|
|
188
|
+
|
|
189
|
+
default_riverwallPar: Dictionary containing default values of the riverwall parameters, to be used
|
|
190
|
+
if they are not explicitly set.
|
|
191
|
+
If not provided, defaults from __init__ are used. See the help for class 'RiverWall' for more info
|
|
192
|
+
|
|
193
|
+
example_default_riverwallPar = {'Qfactor':1.5,
|
|
194
|
+
's1': 0.9,
|
|
195
|
+
's2': 0.95,
|
|
196
|
+
'h1': 1.0,
|
|
197
|
+
'h2': 1.5
|
|
198
|
+
}
|
|
199
|
+
|
|
200
|
+
example_default_riverwallPar = {'Qfactor':1.5,
|
|
201
|
+
's1': 10000.,
|
|
202
|
+
's2': 20000.
|
|
203
|
+
} # Here h1/h2 defaults will come from __init__
|
|
204
|
+
|
|
205
|
+
|
|
206
|
+
tol: Edges will be assigned a riverwall elevation if they are within 'tol' of
|
|
207
|
+
a segment in riverwalls. Round-off error means this should not be too small.
|
|
208
|
+
|
|
209
|
+
verbose: TRUE/FALSE Print lots of information
|
|
210
|
+
|
|
211
|
+
output_dir: Text representation of riverwalls is written to output_dir, unless output_dir=None
|
|
212
|
+
|
|
213
|
+
Outputs:
|
|
214
|
+
None, but it sets domain.edge_flux_type = 1 for every edge on a riverwall
|
|
215
|
+
Also, it adds a RiverWall object domain.riverwallData to the domain
|
|
216
|
+
The latter contains the riverwall heights, names, and hydraulic properties for each edge, in
|
|
217
|
+
a way we can pass in/out of C code.
|
|
218
|
+
|
|
219
|
+
"""
|
|
220
|
+
|
|
221
|
+
#if(verbose and myid==0):
|
|
222
|
+
# print ' '
|
|
223
|
+
# print 'WARNING: Riverwall is an experimental feature'
|
|
224
|
+
# print ' At each riverwall edge, we place a thin "wall" between'
|
|
225
|
+
# print ' the 2 edges -- so each sees its neighbour edge as having'
|
|
226
|
+
# print ' bed elevation = max(levee height, neighbour bed elevation)'
|
|
227
|
+
# print ' We also force the discharge with a weir relation, blended with'
|
|
228
|
+
# print ' the shallow water flux solution as the ratio (min_head)/(weir_height) becomes '
|
|
229
|
+
# print ' large, or the ratio (downstream_head)/(upstream_head) becomes large'
|
|
230
|
+
# print ' '
|
|
231
|
+
# print ' It works in parallel, but you must use domain.riverwallData.create_riverwall AFTER distributing the mesh'
|
|
232
|
+
# print ' '
|
|
233
|
+
|
|
234
|
+
# NOTE: domain.riverwallData is initialised in shallow_water_domain.py for DE algorithms
|
|
235
|
+
domain=self.domain
|
|
236
|
+
|
|
237
|
+
|
|
238
|
+
# Check flow algorithm
|
|
239
|
+
if(not domain.get_using_discontinuous_elevation()):
|
|
240
|
+
raise Exception, 'Riverwalls are currently only supported for discontinuous elevation flow algorithms'
|
|
241
|
+
|
|
242
|
+
if(len(self.names)>0):
|
|
243
|
+
# Delete any existing riverwall data
|
|
244
|
+
# The function cannot presently be used to partially edit riverwall data
|
|
245
|
+
if(verbose):
|
|
246
|
+
print 'Warning: There seems to be existing riverwall data'
|
|
247
|
+
print 'It will be deleted and overwritten with this function call'
|
|
248
|
+
domain.riverwallData.__init__(domain)
|
|
249
|
+
|
|
250
|
+
# Store input parameters
|
|
251
|
+
# FIXME: Is this worth it?
|
|
252
|
+
self.input_riverwall_geo=riverwalls
|
|
253
|
+
self.input_riverwallPar=riverwallPar
|
|
254
|
+
|
|
255
|
+
# Update self.default_riverwallPar (defined in __init__)
|
|
256
|
+
for i in self.default_riverwallPar.keys():
|
|
257
|
+
if(default_riverwallPar.has_key(i)):
|
|
258
|
+
self.default_riverwallPar[i]=default_riverwallPar[i]
|
|
259
|
+
|
|
260
|
+
# Check that all the keys in default_riverwallPar are allowed
|
|
261
|
+
for i in default_riverwallPar.keys():
|
|
262
|
+
if(not self.default_riverwallPar.has_key(i)):
|
|
263
|
+
msg='Key ', i + ' in default_riverwallPar not recognized'
|
|
264
|
+
raise Exception, msg
|
|
265
|
+
# Final default river-wall parameters
|
|
266
|
+
default_riverwallPar=self.default_riverwallPar
|
|
267
|
+
|
|
268
|
+
# Check that all named inputs in riverwallPar correspond to names in
|
|
269
|
+
# riverwall
|
|
270
|
+
for i in riverwallPar.keys():
|
|
271
|
+
if not riverwalls.has_key(i):
|
|
272
|
+
msg= 'Key ', i, ' in riverwallPar has no corresponding key in riverwall'
|
|
273
|
+
raise Exception, msg
|
|
274
|
+
#
|
|
275
|
+
# Check that all hydraulic parameter names in riverwallPar correspond
|
|
276
|
+
# to names in default_riverwallPar
|
|
277
|
+
#
|
|
278
|
+
for j in riverwallPar[i].keys():
|
|
279
|
+
if not default_riverwallPar.has_key(j):
|
|
280
|
+
msg = 'Hydraulic parameter named ', j ,\
|
|
281
|
+
' not recognised in default_riverwallPar'
|
|
282
|
+
raise Exception, msg
|
|
283
|
+
|
|
284
|
+
if(verbose):
|
|
285
|
+
print 'Setting riverwall elevations (P'+str(myid)+')...'
|
|
286
|
+
|
|
287
|
+
# Set up geometry
|
|
288
|
+
exy=domain.edge_coordinates
|
|
289
|
+
llx=domain.mesh.geo_reference.get_xllcorner()
|
|
290
|
+
lly=domain.mesh.geo_reference.get_yllcorner()
|
|
291
|
+
|
|
292
|
+
# Temporary variables
|
|
293
|
+
from anuga.config import max_float
|
|
294
|
+
riverwall_elevation=exy[:,0]*0. - max_float
|
|
295
|
+
riverwall_Qfactor=exy[:,0]*0.
|
|
296
|
+
riverwall_rowIndex=exy[:,0]*0 -1.
|
|
297
|
+
riverwall_rowIndex.astype(int)
|
|
298
|
+
|
|
299
|
+
# Loop over all segments in each riverwall, and set its elevation
|
|
300
|
+
nw=range(len(riverwalls))
|
|
301
|
+
nw_names=riverwalls.keys() # Not guarenteed to be in deterministic order
|
|
302
|
+
|
|
303
|
+
if(verbose):
|
|
304
|
+
# Use variable to record messages, allows cleaner parallel printing
|
|
305
|
+
printInfo=''
|
|
306
|
+
|
|
307
|
+
for i in nw:
|
|
308
|
+
# Name of riverwall
|
|
309
|
+
riverwalli_name=nw_names[i]
|
|
310
|
+
# Look at the ith riverwall
|
|
311
|
+
riverwalli=riverwalls[riverwalli_name]
|
|
312
|
+
|
|
313
|
+
ns=len(riverwalli)-1
|
|
314
|
+
|
|
315
|
+
if(verbose):
|
|
316
|
+
printInfo=printInfo + ' Wall ' + str(i) +' ....\n'
|
|
317
|
+
|
|
318
|
+
for j in range(ns):
|
|
319
|
+
if(verbose):
|
|
320
|
+
printInfo=printInfo + ' Segment ' + str(j) +' ....\n'
|
|
321
|
+
# Start and end xyz coordinates
|
|
322
|
+
start=riverwalli[j]
|
|
323
|
+
end=riverwalli[j+1]
|
|
324
|
+
|
|
325
|
+
if(len(start)!=3 | len(end)!=3):
|
|
326
|
+
msg='Each riverwall coordinate must have at exactly 3 values [xyz]'
|
|
327
|
+
raise Exception, msg
|
|
328
|
+
|
|
329
|
+
# Find length
|
|
330
|
+
segLen=( (start[0]-end[0])**2+(start[1]-end[1])**2)**0.5
|
|
331
|
+
if(segLen<tol):
|
|
332
|
+
if(verbose):
|
|
333
|
+
printInfo=printInfo+' Segment with length < tolerance ' + str(tol) +' ignored\n'
|
|
334
|
+
continue
|
|
335
|
+
|
|
336
|
+
# Find edge indices which are within 'tol' of the segment
|
|
337
|
+
# We use a simple, inefficient method [but likely ok in practice
|
|
338
|
+
# except for very complex riverwalls]
|
|
339
|
+
|
|
340
|
+
# Unit vector along segment
|
|
341
|
+
se_0=-(start[0]-end[0])/segLen
|
|
342
|
+
se_1=-(start[1]-end[1])/segLen
|
|
343
|
+
|
|
344
|
+
# Vector from 'start' to every point on mesh
|
|
345
|
+
# NOTE: We account for georeferencing
|
|
346
|
+
pv_0 = exy[:,0]-(start[0]-llx)
|
|
347
|
+
pv_1 = exy[:,1]-(start[1]-lly)
|
|
348
|
+
|
|
349
|
+
pvLen=( pv_0**2 + pv_1**2)**0.5
|
|
350
|
+
|
|
351
|
+
# Dot product of pv and se == along-segment distance of projection
|
|
352
|
+
# of each point onto segment
|
|
353
|
+
pv_dot_se = pv_0*se_0+pv_1*se_1
|
|
354
|
+
# Normal distance^2 of each point to segment
|
|
355
|
+
perp_len_sq = pvLen**2.-pv_dot_se**2.
|
|
356
|
+
|
|
357
|
+
# Point is on a levee if the perpendicular distance is < tol,
|
|
358
|
+
# AND it is between start and end [within a tolerance]
|
|
359
|
+
onLevee=(perp_len_sq<tol**2)*(pv_dot_se > 0.-tol)*(pv_dot_se<segLen+tol)
|
|
360
|
+
onLevee=onLevee.nonzero()
|
|
361
|
+
onLevee=onLevee[0]
|
|
362
|
+
if(len(onLevee)==0):
|
|
363
|
+
continue
|
|
364
|
+
|
|
365
|
+
if(verbose):
|
|
366
|
+
printInfo=printInfo+' Finding ' + str(len(onLevee)) + ' edges on this segment\n'
|
|
367
|
+
|
|
368
|
+
# Levee has Edge_flux_type=1
|
|
369
|
+
domain.edge_flux_type[onLevee]=1
|
|
370
|
+
|
|
371
|
+
# Get edge elevations as weighted averages of start/end elevations
|
|
372
|
+
w0=pv_dot_se[onLevee]/segLen
|
|
373
|
+
w0=w0*(w0>=0.0) # Enforce min of 0
|
|
374
|
+
w0=w0*(w0<=1.0) + 1.0*(w0>1.0) # Max of 1
|
|
375
|
+
riverwall_elevation[onLevee]= start[2]*(1.0-w0)+w0*end[2]
|
|
376
|
+
|
|
377
|
+
# Record row index
|
|
378
|
+
riverwall_rowIndex[onLevee] = i
|
|
379
|
+
|
|
380
|
+
# Now, condense riverwall_elevation to array with length = number of riverwall edges
|
|
381
|
+
#
|
|
382
|
+
# We do this to avoid storing a riverwall_elevation for every edge in the mesh
|
|
383
|
+
# However, the data structure ends up being quite complex -- maybe there is a better way?
|
|
384
|
+
#
|
|
385
|
+
# The zeroth index in domain.edge_flux_type which = 1 will correspond to riverwall_elevation[0]
|
|
386
|
+
# The first index will correspond to riverwall_elevation[1]
|
|
387
|
+
# etc
|
|
388
|
+
#
|
|
389
|
+
riverwallInds=(domain.edge_flux_type==1).nonzero()[0]
|
|
390
|
+
# elevation
|
|
391
|
+
self.riverwall_elevation=\
|
|
392
|
+
riverwall_elevation[riverwallInds]
|
|
393
|
+
# corresponding row in the hydraulic properties table
|
|
394
|
+
self.hydraulic_properties_rowIndex=\
|
|
395
|
+
riverwall_rowIndex[riverwallInds].astype(int)
|
|
396
|
+
# index of edges which are riverwalls
|
|
397
|
+
self.riverwall_edges=riverwallInds
|
|
398
|
+
|
|
399
|
+
# Record the names of the riverwalls
|
|
400
|
+
self.names=nw_names
|
|
401
|
+
|
|
402
|
+
|
|
403
|
+
# Now create the hydraulic properties table
|
|
404
|
+
|
|
405
|
+
# Temporary variable to hold hydraulic properties table
|
|
406
|
+
# This will have as many rows are there are distinct riverwalls,
|
|
407
|
+
# and as many columns as there are hydraulic variables
|
|
408
|
+
hydraulicTmp=numpy.zeros((len(riverwalls), len(default_riverwallPar)))*numpy.nan
|
|
409
|
+
|
|
410
|
+
if(verbose):
|
|
411
|
+
print ' '
|
|
412
|
+
# Loop over every riverwall / hydraulic parameter, and set its value
|
|
413
|
+
for i in nw:
|
|
414
|
+
# Get the riverwall's name and specified parameters
|
|
415
|
+
name_riverwalli=nw_names[i]
|
|
416
|
+
if(riverwallPar.has_key(name_riverwalli)):
|
|
417
|
+
riverwalli_Par=riverwallPar[name_riverwalli]
|
|
418
|
+
else:
|
|
419
|
+
riverwalli_Par=None
|
|
420
|
+
|
|
421
|
+
# Set the ith riverwall's hydraulic properties
|
|
422
|
+
for j, hydraulicVar in enumerate(self.hydraulic_variable_names):
|
|
423
|
+
if((riverwalli_Par is not None) and (riverwalli_Par.has_key(hydraulicVar))):
|
|
424
|
+
if(verbose):
|
|
425
|
+
printInfo=printInfo+ ' Using provided '+ str(hydraulicVar)+' '+\
|
|
426
|
+
str(riverwalli_Par[hydraulicVar])+ ' for riverwall '+ str(name_riverwalli)+'\n'
|
|
427
|
+
hydraulicTmp[i,j]=riverwalli_Par[hydraulicVar]
|
|
428
|
+
else:
|
|
429
|
+
if(verbose):
|
|
430
|
+
printInfo=printInfo+ ' Using default '+ str(hydraulicVar)+' '+\
|
|
431
|
+
str(default_riverwallPar[hydraulicVar])+' for riverwall '+ str(name_riverwalli)+'\n'
|
|
432
|
+
hydraulicTmp[i,j]=default_riverwallPar[hydraulicVar]
|
|
433
|
+
|
|
434
|
+
if(verbose):
|
|
435
|
+
print ' '
|
|
436
|
+
|
|
437
|
+
# Check that s1 < s2
|
|
438
|
+
for i in nw:
|
|
439
|
+
if(hydraulicTmp[i,1]>= hydraulicTmp[i,2]):
|
|
440
|
+
msg = 's1 >= s2 on riverwall ' + nw_names[i] +'. This is not allowed'
|
|
441
|
+
raise Exception, msg
|
|
442
|
+
if( (hydraulicTmp[i,1]<0.) or (hydraulicTmp[i,2] < 0.)):
|
|
443
|
+
raise Exception, 's1 and s2 must be positive, with s1<s2'
|
|
444
|
+
|
|
445
|
+
# Check that h1 < h2
|
|
446
|
+
for i in nw:
|
|
447
|
+
if(hydraulicTmp[i,3]>= hydraulicTmp[i,4]):
|
|
448
|
+
msg = 'h1 >= h2 on riverwall ' + nw_names[i] +'. This is not allowed'
|
|
449
|
+
raise Exception, msg
|
|
450
|
+
if((hydraulicTmp[i,3]<0.) or (hydraulicTmp[i,4] < 0.)):
|
|
451
|
+
raise Exception, 'h1 and h2 must be positive, with h1<h2'
|
|
452
|
+
|
|
453
|
+
# Define the hydraulic properties
|
|
454
|
+
self.hydraulic_properties=hydraulicTmp
|
|
455
|
+
|
|
456
|
+
# Check for riverwall 'connectedness' errors (e.g. theoretically possible
|
|
457
|
+
# to miss an edge due to round-off)
|
|
458
|
+
connectedness=self.check_riverwall_connectedness(verbose=verbose)
|
|
459
|
+
|
|
460
|
+
self.export_riverwalls_to_text(output_dir=output_dir)
|
|
461
|
+
|
|
462
|
+
# Pretty printing of riverwall information in parallel
|
|
463
|
+
if(verbose):
|
|
464
|
+
if domain.parallel : barrier()
|
|
465
|
+
for i in range(numprocs):
|
|
466
|
+
if(myid==i):
|
|
467
|
+
print 'Processor '+str(myid)
|
|
468
|
+
print printInfo
|
|
469
|
+
print connectedness[0]
|
|
470
|
+
msg='Riverwall discontinuity -- possible round-off error in'+\
|
|
471
|
+
'finding edges on wall -- try increasing value of tol'
|
|
472
|
+
if(not connectedness[1]):
|
|
473
|
+
raise Exception, msg
|
|
474
|
+
if domain.parallel : barrier()
|
|
475
|
+
return
|
|
476
|
+
|
|
477
|
+
#####################################################################################
|
|
478
|
+
|
|
479
|
+
def get_centroids_corresponding_to_edgeInds(self, riverwalledgeInds):
|
|
480
|
+
"""
|
|
481
|
+
Get indices of centroids containing edges with indices riverwalledgeInds
|
|
482
|
+
"""
|
|
483
|
+
riverwallCentInds=numpy.floor(riverwalledgeInds/3.)
|
|
484
|
+
riverwallCentInds=riverwallCentInds.astype(int)
|
|
485
|
+
|
|
486
|
+
return riverwallCentInds
|
|
487
|
+
|
|
488
|
+
#####################################################################################
|
|
489
|
+
|
|
490
|
+
def get_vertices_corresponding_to_edgeInds(self, riverwalledgeInds, checkCoords=True):
|
|
491
|
+
"""
|
|
492
|
+
Get indices of vertices corresponding to edges at index riverwalledgeInds
|
|
493
|
+
|
|
494
|
+
Since each edge has 2 vertices, use V1 and V2
|
|
495
|
+
|
|
496
|
+
There is indeed a simple relationship between the vertex and edge indices
|
|
497
|
+
"""
|
|
498
|
+
|
|
499
|
+
|
|
500
|
+
#riverwallCentInds=self.get_centroids_corresponding_to_edgeInds(riverwalledgeInds)
|
|
501
|
+
|
|
502
|
+
rwEI_mod3=riverwalledgeInds%3
|
|
503
|
+
|
|
504
|
+
# Figure out the difference between each vertex index and the edge index. Is either
|
|
505
|
+
# -2, -1, 1, 2
|
|
506
|
+
rwV1_adjustment= -2*(rwEI_mod3==2) -1*(rwEI_mod3==1) +1*(rwEI_mod3==0)
|
|
507
|
+
rwV2_adjustment= -1*(rwEI_mod3==2) +1*(rwEI_mod3==1) +2*(rwEI_mod3==0)
|
|
508
|
+
riverwallV1Inds=riverwalledgeInds+rwV1_adjustment
|
|
509
|
+
riverwallV2Inds=riverwalledgeInds+rwV2_adjustment
|
|
510
|
+
|
|
511
|
+
if(checkCoords):
|
|
512
|
+
####################################################
|
|
513
|
+
# Check that vertices and edges really do correspond
|
|
514
|
+
domain=self.domain
|
|
515
|
+
# X coordinates
|
|
516
|
+
assert( numpy.allclose(
|
|
517
|
+
domain.edge_coordinates[riverwalledgeInds,0],
|
|
518
|
+
0.5*(domain.vertex_coordinates[riverwallV1Inds,0]+domain.vertex_coordinates[riverwallV2Inds,0]))
|
|
519
|
+
)
|
|
520
|
+
# Y coordinates
|
|
521
|
+
assert( numpy.allclose(
|
|
522
|
+
domain.edge_coordinates[riverwalledgeInds,1],
|
|
523
|
+
0.5*(domain.vertex_coordinates[riverwallV1Inds,1]+domain.vertex_coordinates[riverwallV2Inds,1]))
|
|
524
|
+
)
|
|
525
|
+
####################################################
|
|
526
|
+
|
|
527
|
+
return riverwallV1Inds, riverwallV2Inds
|
|
528
|
+
|
|
529
|
+
#####################################################################################
|
|
530
|
+
def is_vertex_on_boundary(self, vertexIndices):
|
|
531
|
+
"""
|
|
532
|
+
Determine whether a vertex is on the boundary of the domain
|
|
533
|
+
(i.e. it's connected with an edge that is a boundary edge)
|
|
534
|
+
|
|
535
|
+
INPUTS: self -- riverwallData
|
|
536
|
+
vertexIndices -- indices of vertices on the domain which are on the riverwall
|
|
537
|
+
|
|
538
|
+
OUTPUT:
|
|
539
|
+
TRUE if the vertex is on a domain boundary, FALSE otherwise
|
|
540
|
+
|
|
541
|
+
"""
|
|
542
|
+
domain=self.domain
|
|
543
|
+
|
|
544
|
+
# Get edge/vertex indices for boundaries
|
|
545
|
+
boundary_index_info=domain.boundary.keys()
|
|
546
|
+
boundary_edges=[ boundary_index_info[i][0]*3+boundary_index_info[i][1] for i in range(len(boundary_index_info))]
|
|
547
|
+
boundary_edges=numpy.array(boundary_edges)
|
|
548
|
+
tmp=self.get_vertices_corresponding_to_edgeInds(boundary_edges, checkCoords=False)
|
|
549
|
+
boundary_vertices=numpy.hstack([tmp[0], tmp[1]]).tolist()
|
|
550
|
+
|
|
551
|
+
# Get 'unique' vertex coordinates on boundary
|
|
552
|
+
node_complex=domain.vertex_coordinates[boundary_vertices,0]+1j*domain.vertex_coordinates[boundary_vertices,1]
|
|
553
|
+
|
|
554
|
+
# Get riverwall vertex coordinates as complex numbers (for equality testing)
|
|
555
|
+
complex_vertex_coords=domain.vertex_coordinates[vertexIndices.tolist(),0]+\
|
|
556
|
+
1j*domain.vertex_coordinates[vertexIndices.tolist(),1]
|
|
557
|
+
|
|
558
|
+
# Flag telling us if the vertex is on the boundary (1=True, 0=False)
|
|
559
|
+
isOnBoundary=[ 1 if complex_vertex_coords[i] in node_complex else 0 for i in range(len(complex_vertex_coords))]
|
|
560
|
+
isOnBoundary=numpy.array(isOnBoundary)
|
|
561
|
+
|
|
562
|
+
return isOnBoundary
|
|
563
|
+
|
|
564
|
+
#####################################################################################
|
|
565
|
+
def check_riverwall_connectedness(self, verbose=True):
|
|
566
|
+
"""
|
|
567
|
+
We expect riverwalls to be connected
|
|
568
|
+
(although they can pass through the bounding polygon several times, especially in parallel)
|
|
569
|
+
Round-off can potentially cause riverwalls to be dis-connected
|
|
570
|
+
Use this routine to check for that
|
|
571
|
+
|
|
572
|
+
Basically, we search for edges which are connected to vertices which
|
|
573
|
+
themselves are not connected to other edges. We ignore vertices on the domain's bounding-polygon
|
|
574
|
+
|
|
575
|
+
For a continuous riverwall, there can be at most 2 endpoints inside the domain
|
|
576
|
+
|
|
577
|
+
Otherwise, the riverwall is discontinuous, which is an error
|
|
578
|
+
|
|
579
|
+
"""
|
|
580
|
+
|
|
581
|
+
domain = self.domain
|
|
582
|
+
|
|
583
|
+
# Preliminary definitions
|
|
584
|
+
isConnected = True
|
|
585
|
+
printInfo = ''
|
|
586
|
+
|
|
587
|
+
if(len(self.names)==0):
|
|
588
|
+
if(verbose):
|
|
589
|
+
printInfo = printInfo+' There are no riverwalls (P'+str(myid)+')\n'
|
|
590
|
+
return [printInfo, isConnected]
|
|
591
|
+
|
|
592
|
+
# Shorthand notation
|
|
593
|
+
rwd = self
|
|
594
|
+
|
|
595
|
+
for i, name in enumerate(rwd.names):
|
|
596
|
+
# Get indices of edges on this riverwall
|
|
597
|
+
riverwalledgeInds = rwd.riverwall_edges[(rwd.hydraulic_properties_rowIndex==i).nonzero()[0]]
|
|
598
|
+
|
|
599
|
+
if(len(riverwalledgeInds)==0):
|
|
600
|
+
printInfo = printInfo+'Riverwall '+name+' was not found on this mesh (if this is wrong, adjust tol in create_riverwalls)\n'
|
|
601
|
+
continue
|
|
602
|
+
# Get their corresponding vertices
|
|
603
|
+
riverwallV1Inds, riverwallV2Inds = rwd.get_vertices_corresponding_to_edgeInds(riverwalledgeInds)
|
|
604
|
+
|
|
605
|
+
# Flag telling us if vertex points are on the boundary of the model
|
|
606
|
+
# Used to help detect disconnected riverwalls (due to round-off)
|
|
607
|
+
v1_on_boundary = rwd.is_vertex_on_boundary(riverwallV1Inds)
|
|
608
|
+
v2_on_boundary = rwd.is_vertex_on_boundary(riverwallV2Inds)
|
|
609
|
+
|
|
610
|
+
# With discontinuous triangles, we expect edges to occur twice
|
|
611
|
+
# Let's remove duplicates to simplify the analysis
|
|
612
|
+
repeat = riverwalledgeInds*0
|
|
613
|
+
lre = len(riverwalledgeInds)
|
|
614
|
+
# edge coordinates as a complex number, for easy equality checking
|
|
615
|
+
complex_edge_coordinates = domain.edge_coordinates[riverwalledgeInds,0]+\
|
|
616
|
+
1j*domain.edge_coordinates[riverwalledgeInds,1]
|
|
617
|
+
for j in range(lre-1):
|
|
618
|
+
# Ignore if already checked
|
|
619
|
+
if(repeat[j]==1):
|
|
620
|
+
continue
|
|
621
|
+
# Check for a dupulicate
|
|
622
|
+
dups = (complex_edge_coordinates[(j+1):lre]==complex_edge_coordinates[j]).nonzero()[0]
|
|
623
|
+
if(len(dups)>0):
|
|
624
|
+
repeat[dups+j+1] = 1
|
|
625
|
+
|
|
626
|
+
unique_riverwall_edge_indices = (repeat==0).nonzero()[0]
|
|
627
|
+
|
|
628
|
+
# Finally, get 'unqiue' edges in the riverwall
|
|
629
|
+
uEdges = riverwalledgeInds[unique_riverwall_edge_indices]
|
|
630
|
+
uV1 = riverwallV1Inds[unique_riverwall_edge_indices]
|
|
631
|
+
uV2 = riverwallV2Inds[unique_riverwall_edge_indices]
|
|
632
|
+
uV1_boundary = v1_on_boundary[unique_riverwall_edge_indices]
|
|
633
|
+
uV2_boundary = v2_on_boundary[unique_riverwall_edge_indices]
|
|
634
|
+
|
|
635
|
+
# Next, count how many times each vertex value occurs.
|
|
636
|
+
# For a 'connected' riverwall, we only want 2 edges where a vertex occurs only once,
|
|
637
|
+
# unless the vertex is on the boundary of the domain
|
|
638
|
+
lure = len(uEdges)
|
|
639
|
+
complex_v1_coordinates = domain.vertex_coordinates[uV1,0]+\
|
|
640
|
+
1j*domain.vertex_coordinates[uV1,1]
|
|
641
|
+
complex_v2_coordinates = domain.vertex_coordinates[uV2,0]+\
|
|
642
|
+
1j*domain.vertex_coordinates[uV2,1]
|
|
643
|
+
v1Counter = uEdges*0
|
|
644
|
+
v2Counter = uEdges*0
|
|
645
|
+
for j in range(lure):
|
|
646
|
+
v1Counter[j] = (complex_v1_coordinates==complex_v1_coordinates[j]).sum()+\
|
|
647
|
+
(complex_v2_coordinates==complex_v1_coordinates[j]).sum()
|
|
648
|
+
v2Counter[j] = (complex_v1_coordinates==complex_v2_coordinates[j]).sum()+\
|
|
649
|
+
(complex_v2_coordinates==complex_v2_coordinates[j]).sum()
|
|
650
|
+
|
|
651
|
+
num_disconnected_edges = ((v1Counter==1)*(1-uV1_boundary)).sum()+\
|
|
652
|
+
((v2Counter==1)*(1-uV2_boundary)).sum()
|
|
653
|
+
|
|
654
|
+
if(verbose):
|
|
655
|
+
printInfo = printInfo+ ' On riverwall '+ str(name) +' there are '+ str(num_disconnected_edges)+\
|
|
656
|
+
' endpoints inside the domain [ignoring points on the boundary polygon] (P'+str(myid)+')\n'
|
|
657
|
+
|
|
658
|
+
if(num_disconnected_edges <= 2):
|
|
659
|
+
if(verbose):
|
|
660
|
+
pass
|
|
661
|
+
#printInfo=printInfo+ " This is consistent with a continuous wall \n"
|
|
662
|
+
else:
|
|
663
|
+
isConnected = False
|
|
664
|
+
printInfo = printInfo + ' Riverwall ' + name +' appears to be discontinuous. (P'+str(myid)+')\n'+\
|
|
665
|
+
' This suggests there is a gap in the wall, which should not occur\n'
|
|
666
|
+
|
|
667
|
+
return [printInfo, isConnected]
|
|
668
|
+
|
|
669
|
+
###################################################################
|
|
670
|
+
|
|
671
|
+
def export_riverwalls_to_text(self, output_dir=None):
|
|
672
|
+
"""
|
|
673
|
+
Function for dumping riverwall outputs to text file (useful for QC)
|
|
674
|
+
|
|
675
|
+
This will overwrite any existing files with the same location/name
|
|
676
|
+
|
|
677
|
+
INPUT: output_dir = Directory where the outputs will be written
|
|
678
|
+
|
|
679
|
+
OUTPUT:
|
|
680
|
+
None, but writes files as a side effect
|
|
681
|
+
|
|
682
|
+
"""
|
|
683
|
+
if(output_dir is None):
|
|
684
|
+
return
|
|
685
|
+
|
|
686
|
+
if(myid == 0):
|
|
687
|
+
# Make output directory
|
|
688
|
+
try:
|
|
689
|
+
os.mkdir(output_dir)
|
|
690
|
+
except:
|
|
691
|
+
pass
|
|
692
|
+
# Make output files with empty contents
|
|
693
|
+
for i, riverWallFile in enumerate(self.names):
|
|
694
|
+
newFile=open(output_dir + '/' + os.path.splitext(os.path.basename(riverWallFile))[0] + '.txt','w')
|
|
695
|
+
# Write hydraulic variable information
|
|
696
|
+
hydraulicVars=self.hydraulic_properties[i,:]
|
|
697
|
+
newFile.write('## Hydraulic Variable values below ## \n')
|
|
698
|
+
newFile.write(str(self.hydraulic_variable_names) + '\n')
|
|
699
|
+
newFile.write(str(hydraulicVars) + '\n')
|
|
700
|
+
newFile.write('\n')
|
|
701
|
+
newFile.write('## xyElevation at edges below. Order may be erratic for parallel runs ##\n')
|
|
702
|
+
newFile.close()
|
|
703
|
+
else:
|
|
704
|
+
pass
|
|
705
|
+
|
|
706
|
+
|
|
707
|
+
|
|
708
|
+
|
|
709
|
+
domain = self.domain
|
|
710
|
+
|
|
711
|
+
# The other processes might try to write into file
|
|
712
|
+
# before process 0 has created file, so we need a
|
|
713
|
+
# barrier
|
|
714
|
+
if domain.parallel: barrier()
|
|
715
|
+
|
|
716
|
+
# Now dump the required info to the files
|
|
717
|
+
for i in range(numprocs):
|
|
718
|
+
# Write 1 processor at a time
|
|
719
|
+
if(myid == i):
|
|
720
|
+
for j, riverWallname in enumerate(self.names):
|
|
721
|
+
# Get xyz data for riverwall j
|
|
722
|
+
riverWallInds = (self.hydraulic_properties_rowIndex==j).nonzero()[0].tolist()
|
|
723
|
+
riverWallDomainInds = self.riverwall_edges[riverWallInds].tolist()
|
|
724
|
+
myXCoords = domain.edge_coordinates[riverWallDomainInds,0] + domain.geo_reference.xllcorner
|
|
725
|
+
myYCoords = domain.edge_coordinates[riverWallDomainInds,1] + domain.geo_reference.yllcorner
|
|
726
|
+
myElev = self.riverwall_elevation[riverWallInds]
|
|
727
|
+
|
|
728
|
+
# Open file for appending data
|
|
729
|
+
theFile = open(output_dir + '/' + os.path.splitext(os.path.basename(riverWallname))[0] + '.txt','a')
|
|
730
|
+
for k in range(len(myElev)):
|
|
731
|
+
theFile.write(str(myXCoords[k]) + ',' + str(myYCoords[k]) + ',' + str(myElev[k]) + '\n')
|
|
732
|
+
theFile.close()
|
|
733
|
+
|
|
734
|
+
else:
|
|
735
|
+
pass
|
|
736
|
+
|
|
737
|
+
|
|
738
|
+
return
|