anuga 1.3.5__zip
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__config__.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__config__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__init__.py +363 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__metadata__.py +6 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/__metadata__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/__init__.py +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/ermapper_grids.py +251 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/ermapper_grids.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/file_function.py +483 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/file_function.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/gauge.py +1080 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/gauge.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/general_mesh.py +865 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/general_mesh.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_boundary_conditions.py +862 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_boundary_conditions.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_domain.py +2274 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/generic_domain.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory.py +1011 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/mesh_factory_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh.py +1488 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_mesh_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/neighbour_table_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain.py +299 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/pmesh2domain_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity.py +2162 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/quantity_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/region.py +321 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/region.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/setup.py +48 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tag_region.py +167 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tag_region.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/show_balanced_limiters.py +87 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_ermapper.py +189 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_gauge.py +539 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_general_mesh.py +517 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_generic_boundary_conditions.py +439 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_generic_domain.py +907 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_ghost.py +52 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_neighbour_mesh.py +1854 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_pmesh2domain.py +219 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_quantity.py +2859 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_region.py +99 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_tag_region.py +258 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/tests/test_util.py +1632 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/util.py +928 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/abstract_2d_finite_volumes/util.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/__init__.py +12 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection.py +298 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/advection_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/setup.py +27 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/advection/tests/test_advection.py +183 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/__init__.py +4 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/alpha_shape.py +654 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/alpha_shape.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/alpha_shape/tests/test_alpha_shape.py +402 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/anuga_exceptions.py +46 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/anuga_exceptions.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/__init__.py +18 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/caching.py +2531 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/caching.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/dummy_classes_for_testing.py +20 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/dummy_classes_for_testing.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/caching/tests/test_caching.py +895 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/compile_all.py +82 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/compile_all.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/config.py +273 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/config.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/__init__.py +6 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/geo_reference.py +478 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/geo_reference.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/lat_long_UTM_conversion.py +250 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/lat_long_UTM_conversion.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/point.py +128 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/point.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/redfearn.py +233 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/redfearn.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points.csv +11 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z53.csv +11 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z53.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z54.csv +11 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/projection_test_points_z54.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/redfearn.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/data/redfearn.xls +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_geo_reference.py +716 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_lat_long_UTM_conversion.py +126 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_point.py +125 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/coordinate_transforms/tests/test_redfearn.py +508 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/__init__.py +9 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_class.py +1627 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_class.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_polygons.py +114 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_polygons.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_routines.py +362 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/culvert_routines.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/new_culvert_class.py +1630 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/new_culvert_class.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/culvert_polygons_example.py +38 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve.csv +20 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve2.csv +20 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/example_rating_curve2.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/unittests.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/data/unittests.xls +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/run_culvert_flat_water_lev.py +173 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_class.py +812 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_polygons.py +84 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines.py +586 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_box_10pct.py +342 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_box_1pct.py +342 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_pipe_10pct.py +338 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_culvert_routines_pipe_1pct.py +338 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/culvert_flows/tests/test_new_culvert_class.py +810 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/__init__.py +9 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/exposure.py +223 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/exposure.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/inundation_damage.py +467 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/inundation_damage.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/setup.py +21 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/test_exposure.py +325 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/damage_modelling/tests/test_inundation_damage.py +610 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/error_api.py +130 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/error_api.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/extras.py +193 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/extras.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/__init__.py +54 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/csv_file.py +399 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/csv_file.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/mux.py +120 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/mux.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/netcdf.py +266 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/netcdf.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/pts.py +29 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/pts.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/setup.py +27 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sts.py +293 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sts.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sww.py +1552 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/sww.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/__init__.py +8 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_csv.py +413 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_mux.py +1539 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_read_sww.py +350 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_sww.py +560 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_ungenerate.py +283 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/tests/test_urs.py +217 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/ungenerate.py +92 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/ungenerate.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/urs.py +323 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/urs.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/file/urs_ext.pyd +0 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/okada_tsunami.py +347 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/okada_tsunami.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/setup.py +27 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/setup.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/smf.py +467 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/smf.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tests/data/fullokada_MS.lic +23 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tests/data/fullokada_MS.txt +36 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tests/data/fullokada_SP.lic +23 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tests/data/fullokada_SP.txt +36 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tests/data/fullokada_SS.lic +23 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tests/data/fullokada_SS.txt +36 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tests/okada_tsunami_octave_95.txt +101 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tests/test_eq.py +67 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tests/test_okada_tsunami.py +439 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tests/test_smf.py +143 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tests/test_tsunami_okada.py +303 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tsunami_okada.py +1885 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/tsunami_source/tsunami_okada.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/__init__.py +11 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/__init__.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/argparsing.py +76 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/cg_solve.pyc +0 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/plot_utils.py +1237 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/quickPlots.py +164 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/run_anuga_script.py +70 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/run_anuga_script.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/setup.py +39 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/sparse.py +398 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/sparse_matrix_ext.pyd +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/spatialInputUtil.py +1394 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/spatialInputUtil.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/sww_merge.py +820 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/sww_merge.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/system_tools.py +646 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/system_tools.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/terminal_width.py +60 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/terminal_width.pyc +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/data/complex_polygon.csv +4 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/data/complex_polygon.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/data/crc_test_file.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/data/crc_test_file.png +0 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/data/mainland_only.csv +669 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/data/mainland_only.lic +33 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/data/non_complex_polygon.csv +5 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/data/non_complex_polygon.lic +17 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_cg_solve.py +569 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_csv_tools.py +435 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_data_audit.py +393 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_file_utils.py +157 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_function_utils.py +65 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_log_analyser.py +89 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_mem_time_equation.py +47 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_numerical_tools.py +616 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_plot_utils.py +455 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_quantity_setting_functions.py +369 -0
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- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_spatialInputUtil.py +418 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_system_tools.py +483 -0
- Users/steve/Miniconda/envs/anuga/Lib/site-packages/anuga/utilities/tests/test_xml_tools.py +316 -0
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a = [1, 2]
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b = ('Thou shalt count the number three', 4)
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c = {'Five is right out': 6, (7, 8): 9}
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x = 3
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y = 'holy hand granate'
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# Test caching
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# Evaluate and store
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#
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T1 = cache(f, (a, b, c, N), {'x':x, 'y':y}, evaluate=1, \
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compression=comp, verbose=verbose)
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# Retrieve
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#
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# Reference result
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#
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T3 = f(a, b, c, N, x=x, y=y) # Compute without caching
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assert T1 == T2, 'Cached result does not match computed result'
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assert T2 == T3, 'Cached result does not match computed result'
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def test_caching_of_numeric_arrays(self):
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"""test_caching_of_numeric_arrays
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+
|
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121
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+
Test that numeric arrays can be recognised by caching even if their id's are different
|
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+
"""
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123
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+
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verbose = False
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+
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# Make some test input arguments
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+
A0 = num.arange(5)
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+
B0 = num.array([1.1, 2.2, 0.0, -5, -5])
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+
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130
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+
A1 = A0.copy()
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+
B1 = B0.copy()
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+
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# Check that their ids are different
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+
assert id(A0) != id(A1)
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+
assert id(B0) != id(B1)
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+
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137
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+
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+
# Test caching
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+
comprange = 2
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+
for comp in range(comprange):
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+
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+
# Evaluate and store
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+
T1 = cache(f_numeric, (A0, B0), evaluate=1,
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compression=comp, verbose=verbose)
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+
|
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+
# Retrieve
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+
T2 = cache(f_numeric, (A1, B1),
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+
compression=comp, test=1, verbose=verbose)
|
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+
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+
# Check for presence of cached result
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msg = 'Different array objects with same contents were not recognised'
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assert T2 is not None, msg
|
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+
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+
# Reference result
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T3 = f_numeric(A0, B0) # Compute without caching
|
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+
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157
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+
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+
assert num.alltrue(T1 == T2), 'Cached result does not match computed result'
|
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+
assert num.alltrue(T2 == T3), 'Cached result does not match computed result'
|
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160
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+
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161
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+
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+
def test_hash_collision(self):
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"""Test that hash collisons are dealt with correctly"""
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+
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verbose = False
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+
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+
# Make test input arguments
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+
A0 = num.arange(5) * 1.0
|
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+
B = ('x', 15)
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170
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+
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+
# Create different A that hashes to the same address (having the same average)
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+
A1 = num.array([2.0, 2.0, 2.0, 2.0, 2.0])
|
|
173
|
+
|
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174
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+
assert myhash(A0) == myhash(A1)
|
|
175
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+
|
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176
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+
|
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177
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+
# Test caching
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+
comprange = 2
|
|
179
|
+
for comp in range(comprange):
|
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180
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+
|
|
181
|
+
# Clear
|
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182
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+
cache(f_numeric, (A0, A0), clear=1,
|
|
183
|
+
compression=comp, verbose=verbose)
|
|
184
|
+
cache(f_numeric, (A1, A1), clear=1,
|
|
185
|
+
compression=comp, verbose=verbose)
|
|
186
|
+
|
|
187
|
+
|
|
188
|
+
# Evaluate and store
|
|
189
|
+
T1 = cache(f_numeric, (A0, A0), evaluate=1,
|
|
190
|
+
compression=comp, verbose=verbose)
|
|
191
|
+
|
|
192
|
+
|
|
193
|
+
# Check that A1 doesn't trigger retrieval of the previous result
|
|
194
|
+
# even though it hashes to the same address
|
|
195
|
+
T2 = cache(f_numeric, (A1, A1),
|
|
196
|
+
compression=comp, verbose=verbose)
|
|
197
|
+
|
|
198
|
+
T1_ref = f_numeric(A0, A0)
|
|
199
|
+
T2_ref = f_numeric(A1, A1)
|
|
200
|
+
T1_ref = f_numeric(A0, A0)
|
|
201
|
+
T2_ref = f_numeric(A1, A1)
|
|
202
|
+
|
|
203
|
+
assert num.alltrue(T1 == T1_ref)
|
|
204
|
+
assert num.alltrue(T2 == T2_ref)
|
|
205
|
+
|
|
206
|
+
|
|
207
|
+
def test_caching_of_dictionaries(self):
|
|
208
|
+
"""test_caching_of_dictionaries
|
|
209
|
+
|
|
210
|
+
Real example from ANUGA that caused some
|
|
211
|
+
hashing problems
|
|
212
|
+
"""
|
|
213
|
+
|
|
214
|
+
|
|
215
|
+
verbose = False # True
|
|
216
|
+
|
|
217
|
+
D = {'point_attributes': None,
|
|
218
|
+
'use_cache': True,
|
|
219
|
+
'vertex_coordinates': None,
|
|
220
|
+
'verbose': False,
|
|
221
|
+
'max_read_lines': 500,
|
|
222
|
+
'acceptable_overshoot': 1.01,
|
|
223
|
+
'mesh': None,
|
|
224
|
+
'data_origin': None,
|
|
225
|
+
'alpha': 0.02,
|
|
226
|
+
'mesh_origin': None,
|
|
227
|
+
'attribute_name': None,
|
|
228
|
+
'triangles': None}
|
|
229
|
+
|
|
230
|
+
DD = deepcopy(D) # Mangles the dictionary ordering
|
|
231
|
+
|
|
232
|
+
assert myhash(DD) == myhash(D)
|
|
233
|
+
|
|
234
|
+
# Also test caching now that we are at it
|
|
235
|
+
comprange = 2
|
|
236
|
+
for comp in range(comprange):
|
|
237
|
+
|
|
238
|
+
# Evaluate and store using D
|
|
239
|
+
T1 = cache(f_generic, D, evaluate=1,
|
|
240
|
+
compression=comp, verbose=verbose)
|
|
241
|
+
|
|
242
|
+
# Retrieve using copy (DD)
|
|
243
|
+
T2 = cache(f_generic, DD,
|
|
244
|
+
compression=comp, test=1, verbose=verbose)
|
|
245
|
+
|
|
246
|
+
# Check for presence of cached result
|
|
247
|
+
msg = 'Cached object was not found'
|
|
248
|
+
assert T2 is not None, msg
|
|
249
|
+
|
|
250
|
+
# Reference result
|
|
251
|
+
T3 = f_generic(D) # Compute without caching
|
|
252
|
+
|
|
253
|
+
|
|
254
|
+
msg = 'Cached result does not match computed result'
|
|
255
|
+
|
|
256
|
+
# Compare dictionaries
|
|
257
|
+
for key in T1:
|
|
258
|
+
assert T1[key] == T2[key]
|
|
259
|
+
assert T2[key] == T3[key]
|
|
260
|
+
|
|
261
|
+
|
|
262
|
+
|
|
263
|
+
|
|
264
|
+
|
|
265
|
+
def test_caching_of_objects(self):
|
|
266
|
+
"""test_caching_of_objects
|
|
267
|
+
|
|
268
|
+
Test that Objecs can be recognised as input variabelse
|
|
269
|
+
by caching even if their id's are different
|
|
270
|
+
"""
|
|
271
|
+
|
|
272
|
+
|
|
273
|
+
verbose = False
|
|
274
|
+
|
|
275
|
+
# Make some test input arguments
|
|
276
|
+
A0 = Dummy(5, 7)
|
|
277
|
+
B0 = Dummy(2.2, -5)
|
|
278
|
+
|
|
279
|
+
A0.new_attribute = 'x'
|
|
280
|
+
B0.new_attribute = 'x'
|
|
281
|
+
|
|
282
|
+
A1 = deepcopy(A0)
|
|
283
|
+
B1 = deepcopy(B0)
|
|
284
|
+
|
|
285
|
+
# Check that their ids are different
|
|
286
|
+
assert id(A0) != id(A1)
|
|
287
|
+
assert id(B0) != id(B1)
|
|
288
|
+
|
|
289
|
+
|
|
290
|
+
# Test caching
|
|
291
|
+
comprange = 2
|
|
292
|
+
for comp in range(comprange):
|
|
293
|
+
|
|
294
|
+
# Evaluate and store
|
|
295
|
+
T1 = cache(f_object, (A0, B0), evaluate=1,
|
|
296
|
+
compression=comp, verbose=verbose)
|
|
297
|
+
|
|
298
|
+
# Retrieve
|
|
299
|
+
T2 = cache(f_object, (A1, B1),
|
|
300
|
+
compression=comp,
|
|
301
|
+
test=1,
|
|
302
|
+
verbose=verbose)
|
|
303
|
+
|
|
304
|
+
# Check for presence of cached result
|
|
305
|
+
msg = 'Different objects with same attributes were not recognised'
|
|
306
|
+
assert T2 is not None, msg
|
|
307
|
+
|
|
308
|
+
# Reference result
|
|
309
|
+
T3 = f_object(A0, B0) # Compute without caching
|
|
310
|
+
|
|
311
|
+
|
|
312
|
+
assert T1 == T2, 'Cached result does not match computed result'
|
|
313
|
+
assert T2 == T3, 'Cached result does not match computed result'
|
|
314
|
+
|
|
315
|
+
|
|
316
|
+
def test_caching_of_circular_structures(self):
|
|
317
|
+
"""test_caching_of_circular_structures
|
|
318
|
+
|
|
319
|
+
Test that Caching doesn't recurse infinitely in case of
|
|
320
|
+
circular or self-referencing structures
|
|
321
|
+
"""
|
|
322
|
+
|
|
323
|
+
verbose = False
|
|
324
|
+
|
|
325
|
+
# Create input argument
|
|
326
|
+
A = Dummy(5, 7)
|
|
327
|
+
B = {'x': 10, 'A': A}
|
|
328
|
+
C = [B, 15]
|
|
329
|
+
A.value = C # Make it circular
|
|
330
|
+
A.x = [1, 2, C, 5, A] # More circular and self referential
|
|
331
|
+
|
|
332
|
+
AA = deepcopy(A)
|
|
333
|
+
|
|
334
|
+
# Test caching
|
|
335
|
+
comprange = 2
|
|
336
|
+
for comp in range(comprange):
|
|
337
|
+
|
|
338
|
+
# Evaluate and store
|
|
339
|
+
T1 = cache(f_generic, A,
|
|
340
|
+
evaluate=1,
|
|
341
|
+
compression=comp, verbose=verbose)
|
|
342
|
+
|
|
343
|
+
# Retrieve
|
|
344
|
+
T2 = cache(f_generic, AA,
|
|
345
|
+
compression=comp,
|
|
346
|
+
test=1, verbose=verbose)
|
|
347
|
+
|
|
348
|
+
# Check for presence of cached result
|
|
349
|
+
msg = 'Cached object was not found'
|
|
350
|
+
assert T2 is not None, msg
|
|
351
|
+
|
|
352
|
+
# Reference result
|
|
353
|
+
T3 = f_generic(A) # Compute without caching
|
|
354
|
+
|
|
355
|
+
|
|
356
|
+
msg = 'Cached result does not match computed result'
|
|
357
|
+
assert str(T1) == str(T2), msg
|
|
358
|
+
assert str(T2) == str(T3), msg
|
|
359
|
+
|
|
360
|
+
|
|
361
|
+
def test_caching_of_callable_objects(self):
|
|
362
|
+
"""test_caching_of_callable_objects(self)
|
|
363
|
+
|
|
364
|
+
Test that caching will discern between calls of
|
|
365
|
+
two different instances of a callable object with the same input.
|
|
366
|
+
|
|
367
|
+
This cause problems with add_quantity in ANUGA in changeset:6225
|
|
368
|
+
where a previous instance of Polygon_function was picked up.
|
|
369
|
+
"""
|
|
370
|
+
|
|
371
|
+
class call:
|
|
372
|
+
|
|
373
|
+
def __init__(self, a, b):
|
|
374
|
+
self.a = a
|
|
375
|
+
self.b = b
|
|
376
|
+
|
|
377
|
+
def __call__(self, x):
|
|
378
|
+
return self.a * x + self.b
|
|
379
|
+
|
|
380
|
+
|
|
381
|
+
f1 = call(2, 3)
|
|
382
|
+
f2 = call(5, 7)
|
|
383
|
+
|
|
384
|
+
# Check that hash value of callable objects don't change
|
|
385
|
+
# FIXME (Ole): The hash values do appear to change when OS
|
|
386
|
+
# and/or dependencies are upgraded
|
|
387
|
+
if os.name == 'posix' and os.uname()[4] in ['x86_64', 'ia64']:
|
|
388
|
+
# 64 bit hash values
|
|
389
|
+
f1hash = 7079146893884768701
|
|
390
|
+
f2hash = -6995306676314913340
|
|
391
|
+
|
|
392
|
+
# Prior to cluster upgrades Feb 2009
|
|
393
|
+
# f1hash = 1914027059797211698
|
|
394
|
+
# f2hash = 1914027059807087171
|
|
395
|
+
else:
|
|
396
|
+
# 32 bit hash values
|
|
397
|
+
f1hash = -758136387
|
|
398
|
+
f2hash = -11221564
|
|
399
|
+
|
|
400
|
+
assert myhash(f1) == f1hash
|
|
401
|
+
assert myhash(f2) == f2hash
|
|
402
|
+
|
|
403
|
+
bc1 = get_bytecode(f1)
|
|
404
|
+
bc2 = get_bytecode(f2)
|
|
405
|
+
|
|
406
|
+
msg = 'Byte code should be different'
|
|
407
|
+
assert bc1 != bc2, msg
|
|
408
|
+
|
|
409
|
+
|
|
410
|
+
x = num.arange(10).astype(num.float)
|
|
411
|
+
|
|
412
|
+
ref1 = f1(x)
|
|
413
|
+
ref2 = f2(x)
|
|
414
|
+
|
|
415
|
+
# Clear cache for f1(x) and f2(x) and verify that all is clear
|
|
416
|
+
cache(f1, x, clear=True, verbose=False)
|
|
417
|
+
flag = cache(f1, x, test=True, verbose=False)
|
|
418
|
+
assert flag is None
|
|
419
|
+
|
|
420
|
+
cache(f2, x, clear=True, verbose=False)
|
|
421
|
+
flag = cache(f2, x, test=True, verbose=False)
|
|
422
|
+
assert flag is None
|
|
423
|
+
|
|
424
|
+
# Run f1(x) and cache
|
|
425
|
+
res1 = cache(f1, x, verbose=False)
|
|
426
|
+
assert num.allclose(res1, ref1)
|
|
427
|
+
|
|
428
|
+
# Test that f1(x) has been cached correctly
|
|
429
|
+
res1 = cache(f1, x, test=True, verbose=False)
|
|
430
|
+
assert num.allclose(res1, ref1)
|
|
431
|
+
|
|
432
|
+
# Test that f2(x) is still clear
|
|
433
|
+
cache(f2, x, clear=True, verbose=False)
|
|
434
|
+
flag = cache(f2, x, test=True, verbose=False)
|
|
435
|
+
assert flag is None
|
|
436
|
+
|
|
437
|
+
# Run f2(x) and test result
|
|
438
|
+
res2 = cache(f2, x, verbose=False)
|
|
439
|
+
msg = 'Wrong result for f2(x)'
|
|
440
|
+
assert num.allclose(res2, ref2), msg
|
|
441
|
+
|
|
442
|
+
|
|
443
|
+
|
|
444
|
+
|
|
445
|
+
def test_uniqueness_of_hash_values(self):
|
|
446
|
+
"""test_uniqueness_of_hash_values(self):
|
|
447
|
+
|
|
448
|
+
Test that Caching can handle a realistic
|
|
449
|
+
complex structure by hashing it consistently and
|
|
450
|
+
uniquely.
|
|
451
|
+
"""
|
|
452
|
+
|
|
453
|
+
verbose = False
|
|
454
|
+
|
|
455
|
+
# Create input argument
|
|
456
|
+
A = Dummy(5, 7)
|
|
457
|
+
B = {'x': 10, 'A': A}
|
|
458
|
+
C = [B, num.array([1.2, 3, 5, 0.1])]
|
|
459
|
+
A.value = C # Make it circular
|
|
460
|
+
|
|
461
|
+
# Create identical but separate object
|
|
462
|
+
AA = Dummy(None, None)
|
|
463
|
+
BB = {'A': AA, 'x': 10}
|
|
464
|
+
CC = [BB, num.array([1.200, 3.000, 5.00, 1.0 / 10])]
|
|
465
|
+
AA.value = CC # Make it circular
|
|
466
|
+
AA.another = 3 + 4
|
|
467
|
+
|
|
468
|
+
|
|
469
|
+
assert myhash(A) == myhash(AA)
|
|
470
|
+
|
|
471
|
+
|
|
472
|
+
|
|
473
|
+
# Also test caching now that we are at it
|
|
474
|
+
comprange = 2
|
|
475
|
+
for comp in range(comprange):
|
|
476
|
+
|
|
477
|
+
# Evaluate and store using A
|
|
478
|
+
T1 = cache(f_generic, A, evaluate=1,
|
|
479
|
+
compression=comp, verbose=verbose)
|
|
480
|
+
|
|
481
|
+
# Retrieve using copy (AA)
|
|
482
|
+
T2 = cache(f_generic, AA,
|
|
483
|
+
compression=comp, test=1, verbose=verbose)
|
|
484
|
+
|
|
485
|
+
# Check for presence of cached result
|
|
486
|
+
msg = 'Cached object was not found'
|
|
487
|
+
assert T2 is not None, msg
|
|
488
|
+
|
|
489
|
+
# Reference result
|
|
490
|
+
T3 = f_generic(A) # Compute without caching
|
|
491
|
+
|
|
492
|
+
|
|
493
|
+
msg = 'Cached result does not match computed result'
|
|
494
|
+
assert str(T1) == str(T2), msg
|
|
495
|
+
assert str(T2) == str(T3), msg
|
|
496
|
+
|
|
497
|
+
|
|
498
|
+
|
|
499
|
+
def test_caching_of_simple_circular_dictionaries(self):
|
|
500
|
+
"""test_caching_of_circular_structures
|
|
501
|
+
|
|
502
|
+
Test that Caching doesn't recurse infinitely in case of
|
|
503
|
+
circular or self-referencing structures
|
|
504
|
+
"""
|
|
505
|
+
|
|
506
|
+
verbose = False # True
|
|
507
|
+
|
|
508
|
+
# Create input argument
|
|
509
|
+
A = {'x': 10, 'B': None}
|
|
510
|
+
B = [A, 15]
|
|
511
|
+
A['B'] = B # Make it circular
|
|
512
|
+
|
|
513
|
+
# Test caching
|
|
514
|
+
comprange = 2
|
|
515
|
+
for comp in range(comprange):
|
|
516
|
+
|
|
517
|
+
# Evaluate and store
|
|
518
|
+
T1 = cache(f_generic, A, evaluate=1,
|
|
519
|
+
compression=comp, verbose=verbose)
|
|
520
|
+
|
|
521
|
+
|
|
522
|
+
# Retrieve
|
|
523
|
+
T2 = cache(f_generic, A,
|
|
524
|
+
compression=comp, test=1, verbose=verbose)
|
|
525
|
+
|
|
526
|
+
# Check for presence of cached result
|
|
527
|
+
msg = 'Cached object was not found'
|
|
528
|
+
assert T2 is not None, msg
|
|
529
|
+
|
|
530
|
+
# Reference result
|
|
531
|
+
T3 = f_generic(A) # Compute without caching
|
|
532
|
+
|
|
533
|
+
|
|
534
|
+
msg = 'Cached result does not match computed result'
|
|
535
|
+
assert str(T1) == str(T2), msg
|
|
536
|
+
assert str(T2) == str(T3), msg
|
|
537
|
+
|
|
538
|
+
|
|
539
|
+
|
|
540
|
+
def test_cachefiles(self):
|
|
541
|
+
"""Test existence of cachefiles
|
|
542
|
+
"""
|
|
543
|
+
N = 5000 # Make N fairly small here
|
|
544
|
+
|
|
545
|
+
a = [1, 2]
|
|
546
|
+
b = ('Thou shalt count the number three', 4)
|
|
547
|
+
c = {'Five is right out': 6, (7, 8): 9}
|
|
548
|
+
x = 3
|
|
549
|
+
y = 'holy hand granate'
|
|
550
|
+
|
|
551
|
+
|
|
552
|
+
FN = cache(f, (a, b, c, N), {'x':x, 'y':y}, verbose=0, \
|
|
553
|
+
return_filename=1)
|
|
554
|
+
|
|
555
|
+
|
|
556
|
+
assert FN[:2] == 'f['
|
|
557
|
+
|
|
558
|
+
CD = checkdir(cachedir)
|
|
559
|
+
compression = 1
|
|
560
|
+
|
|
561
|
+
(datafile, compressed0) = myopen(CD + FN + '_' + file_types[0], "rb", compression)
|
|
562
|
+
(argsfile, compressed1) = myopen(CD + FN + '_' + file_types[1], "rb", compression)
|
|
563
|
+
(admfile, compressed2) = myopen(CD + FN + '_' + file_types[2], "rb", compression)
|
|
564
|
+
|
|
565
|
+
datafile.close()
|
|
566
|
+
argsfile.close()
|
|
567
|
+
admfile.close()
|
|
568
|
+
|
|
569
|
+
def test_test(self):
|
|
570
|
+
"""Test 'test' function when cache is present
|
|
571
|
+
"""
|
|
572
|
+
|
|
573
|
+
verbose = False
|
|
574
|
+
|
|
575
|
+
N = 5
|
|
576
|
+
|
|
577
|
+
a = [1, 2]
|
|
578
|
+
b = ('Thou shalt count the number three', 4)
|
|
579
|
+
c = {'Five is right out': 6, (7, 8): 9}
|
|
580
|
+
x = 3
|
|
581
|
+
y = 'holy hand granate'
|
|
582
|
+
|
|
583
|
+
|
|
584
|
+
T1 = cache(f, (a, b, c, N), {'x':x, 'y':y},
|
|
585
|
+
evaluate=1,
|
|
586
|
+
verbose=verbose)
|
|
587
|
+
|
|
588
|
+
T2 = cache(f, (a, b, c, N), {'x':x, 'y':y},
|
|
589
|
+
test=1,
|
|
590
|
+
verbose=verbose)
|
|
591
|
+
|
|
592
|
+
|
|
593
|
+
# Check for presence of cached result
|
|
594
|
+
msg = 'Different objects with same attributes were not recognised'
|
|
595
|
+
assert T2 is not None, msg
|
|
596
|
+
|
|
597
|
+
assert T1 == T2, "Option 'test' when cache file present failed"
|
|
598
|
+
|
|
599
|
+
|
|
600
|
+
def test_clear(self):
|
|
601
|
+
"""Test that 'clear' works
|
|
602
|
+
"""
|
|
603
|
+
|
|
604
|
+
N = 5000 # Make N fairly small here
|
|
605
|
+
|
|
606
|
+
a = [1, 2]
|
|
607
|
+
b = ('Thou shalt count the number three', 4)
|
|
608
|
+
c = {'Five is right out': 6, (7, 8): 9}
|
|
609
|
+
x = 3
|
|
610
|
+
y = 'holy hand granate'
|
|
611
|
+
|
|
612
|
+
|
|
613
|
+
T1 = cache(f, (a, b, c, N), {'x':x, 'y':y}, evaluate=1)
|
|
614
|
+
|
|
615
|
+
|
|
616
|
+
cache(f, (a, b, c, N), {'x':x, 'y':y}, clear=1)
|
|
617
|
+
|
|
618
|
+
|
|
619
|
+
# Test 'test' function when cache is absent
|
|
620
|
+
|
|
621
|
+
|
|
622
|
+
T4 = cache(f, (a, b, c, N), {'x':x, 'y':y}, test=1)
|
|
623
|
+
assert T4 is None, "Option 'test' when cache absent failed"
|
|
624
|
+
|
|
625
|
+
|
|
626
|
+
def test_dependencies(self):
|
|
627
|
+
|
|
628
|
+
# Make a dependency file
|
|
629
|
+
CD = checkdir(cachedir)
|
|
630
|
+
|
|
631
|
+
DepFN = CD + 'testfile.tmp'
|
|
632
|
+
DepFN_wildcard = CD + 'test*.tmp'
|
|
633
|
+
Depfile = open(DepFN, 'w')
|
|
634
|
+
Depfile.write('We are the knights who say NI!')
|
|
635
|
+
Depfile.close()
|
|
636
|
+
|
|
637
|
+
|
|
638
|
+
# Test
|
|
639
|
+
#
|
|
640
|
+
|
|
641
|
+
N = 5000 # Make N fairly small here
|
|
642
|
+
|
|
643
|
+
a = [1, 2]
|
|
644
|
+
b = ('Thou shalt count the number three', 4)
|
|
645
|
+
c = {'Five is right out': 6, (7, 8): 9}
|
|
646
|
+
x = 3
|
|
647
|
+
y = 'holy hand granate'
|
|
648
|
+
|
|
649
|
+
T1 = cache(f, (a, b, c, N), {'x':x, 'y':y}, dependencies=DepFN)
|
|
650
|
+
T2 = cache(f, (a, b, c, N), {'x':x, 'y':y}, dependencies=DepFN)
|
|
651
|
+
|
|
652
|
+
assert T1 == T2, 'Dependencies do not work'
|
|
653
|
+
|
|
654
|
+
|
|
655
|
+
# Test basic wildcard dependency
|
|
656
|
+
T3 = cache(f, (a, b, c, N), {'x':x, 'y':y}, dependencies=DepFN_wildcard)
|
|
657
|
+
|
|
658
|
+
assert T1 == T3, 'Dependencies with wildcards do not work'
|
|
659
|
+
|
|
660
|
+
|
|
661
|
+
# Test that changed timestamp in dependencies triggers recomputation
|
|
662
|
+
|
|
663
|
+
# Modify dependency file
|
|
664
|
+
Depfile = open(DepFN, 'a')
|
|
665
|
+
Depfile.write('You must cut down the mightiest tree in the forest with a Herring')
|
|
666
|
+
Depfile.close()
|
|
667
|
+
|
|
668
|
+
T3 = cache(f, (a, b, c, N), {'x':x, 'y':y}, dependencies=DepFN, test=1)
|
|
669
|
+
|
|
670
|
+
assert T3 is None, 'Changed dependencies not recognised'
|
|
671
|
+
|
|
672
|
+
# Test recomputation when dependencies have changed
|
|
673
|
+
#
|
|
674
|
+
T3 = cache(f, (a, b, c, N), {'x':x, 'y':y}, dependencies=DepFN)
|
|
675
|
+
assert T1 == T3, 'Recomputed value with changed dependencies failed'
|
|
676
|
+
|
|
677
|
+
# def test_performance(self):
|
|
678
|
+
# """Performance test (with statistics)
|
|
679
|
+
# Don't really rely on this as it will depend on specific computer.
|
|
680
|
+
# """
|
|
681
|
+
#
|
|
682
|
+
# import time
|
|
683
|
+
# set_option('savestat', 1)
|
|
684
|
+
#
|
|
685
|
+
# N = 300000 #Should be large on fast computers...
|
|
686
|
+
# a = [1,2]
|
|
687
|
+
# b = ('Thou shalt count the number three',4)
|
|
688
|
+
# c = {'Five is right out': 6, (7,8): 9}
|
|
689
|
+
# x = 3
|
|
690
|
+
# y = 'holy hand granate'
|
|
691
|
+
#
|
|
692
|
+
#
|
|
693
|
+
# tt = time.time()
|
|
694
|
+
# T1 = cache(f,(a,b,c,N), {'x':x, 'y':y})
|
|
695
|
+
# t1 = time.time() - tt
|
|
696
|
+
#
|
|
697
|
+
# tt = time.time()
|
|
698
|
+
# T2 = cache(f,(a,b,c,N), {'x':x, 'y':y})
|
|
699
|
+
# t2 = time.time() - tt
|
|
700
|
+
|
|
701
|
+
# assert T1 == T2
|
|
702
|
+
# assert t1 > t2, 'WARNING: Performance a bit low - this could be specific to current platform. Try to increase N in this test'
|
|
703
|
+
# #test_OK('Performance test: relative time saved = %s pct' \
|
|
704
|
+
# # %str(round((t1-t2)*100/t1,2)))
|
|
705
|
+
|
|
706
|
+
|
|
707
|
+
def test_statsfile(self):
|
|
708
|
+
"""Test presence of statistics file
|
|
709
|
+
"""
|
|
710
|
+
import os, string
|
|
711
|
+
statsfile = '.cache_stat' # Basefilename for cached statistics.
|
|
712
|
+
|
|
713
|
+
CD = checkdir(cachedir)
|
|
714
|
+
DIRLIST = os.listdir(CD)
|
|
715
|
+
SF = []
|
|
716
|
+
for FN in DIRLIST:
|
|
717
|
+
if string.find(FN, statsfile) >= 0:
|
|
718
|
+
try:
|
|
719
|
+
fid = open(CD + FN, 'r')
|
|
720
|
+
fid.close()
|
|
721
|
+
except:
|
|
722
|
+
raise Exception('Statistics files cannot be opened')
|
|
723
|
+
|
|
724
|
+
|
|
725
|
+
|
|
726
|
+
# def test_network_cachedir(self):
|
|
727
|
+
|
|
728
|
+
# #set_option('cachedir', 'H:\\.python_cache\\')
|
|
729
|
+
# set_option('cachedir', 'V:\\2\\cit\\.python_cache\\')
|
|
730
|
+
# set_option('verbose', 1)
|
|
731
|
+
|
|
732
|
+
|
|
733
|
+
# # Make some test input arguments
|
|
734
|
+
# #
|
|
735
|
+
# N = 5000 #Make N fairly small here
|
|
736
|
+
|
|
737
|
+
# a = [1,2]
|
|
738
|
+
# b = ('Thou shalt count the number three',4)
|
|
739
|
+
# c = {'Five is right out': 6, (7,8): 9}
|
|
740
|
+
# x = 3
|
|
741
|
+
# y = 'holy hand granate'
|
|
742
|
+
|
|
743
|
+
# # Test caching
|
|
744
|
+
# #
|
|
745
|
+
|
|
746
|
+
# comprange = 2
|
|
747
|
+
|
|
748
|
+
# for comp in range(comprange):
|
|
749
|
+
|
|
750
|
+
# # Evaluate and store
|
|
751
|
+
# #
|
|
752
|
+
# T1 = cache(f, (a,b,c,N), {'x':x, 'y':y}, evaluate=1, \
|
|
753
|
+
# compression=comp)
|
|
754
|
+
|
|
755
|
+
# # Retrieve
|
|
756
|
+
# #
|
|
757
|
+
# T2 = cache(f, (a,b,c,N), {'x':x, 'y':y}, compression=comp)
|
|
758
|
+
|
|
759
|
+
# # Reference result
|
|
760
|
+
# #
|
|
761
|
+
# T3 = f(a,b,c,N,x=x,y=y) # Compute without caching
|
|
762
|
+
|
|
763
|
+
|
|
764
|
+
# assert T1 == T2, 'Cached result does not match computed result'
|
|
765
|
+
# assert T2 == T3, 'Cached result does not match computed result'
|
|
766
|
+
|
|
767
|
+
|
|
768
|
+
|
|
769
|
+
def Will_fail_objects(self):
|
|
770
|
+
"""
|
|
771
|
+
This test shows how instances can't be effectively cached.
|
|
772
|
+
myhash uses hash which uses id which uses the memory address.
|
|
773
|
+
|
|
774
|
+
This will be a NIL problem once caching can handle instances with different id's and
|
|
775
|
+
identical content.
|
|
776
|
+
|
|
777
|
+
The test is disabled.
|
|
778
|
+
"""
|
|
779
|
+
|
|
780
|
+
|
|
781
|
+
|
|
782
|
+
verbose = True
|
|
783
|
+
# verbose = False
|
|
784
|
+
|
|
785
|
+
for i in range(2):
|
|
786
|
+
if verbose: print "clear cache"
|
|
787
|
+
a = cache(Dummy, 'clear')
|
|
788
|
+
|
|
789
|
+
if verbose: print "cache for first time"
|
|
790
|
+
a = cache(Dummy, args=(9, 10), verbose=verbose)
|
|
791
|
+
hash_value = myhash(a)
|
|
792
|
+
|
|
793
|
+
# print "hash_value",hash_value
|
|
794
|
+
if verbose: print "cache for second time"
|
|
795
|
+
a = cache(Dummy, args=(9, 10), verbose=verbose)
|
|
796
|
+
|
|
797
|
+
# print "myhash(a)",myhash(a)
|
|
798
|
+
assert hash_value == myhash(a)
|
|
799
|
+
|
|
800
|
+
|
|
801
|
+
# This test works in the caching dir and in anuga_core, but not in the
|
|
802
|
+
# anuga_core/source/anuga dir
|
|
803
|
+
# This has to do with pickle (see e.g. http://telin.ugent.be/~slippens/drupal/pickleproblem)
|
|
804
|
+
# The error message is
|
|
805
|
+
# PicklingError: Can't pickle test_caching.Dummy: it's not the same object as test_caching.Dummy
|
|
806
|
+
#
|
|
807
|
+
# This problem was fixed by moving the class into the separate module
|
|
808
|
+
|
|
809
|
+
def test_objects_are_created(self):
|
|
810
|
+
"""
|
|
811
|
+
This test shows how instances can be created from cache
|
|
812
|
+
as long as input arguments are unchanged.
|
|
813
|
+
|
|
814
|
+
Such instances will have different id's and cannot be currently be used as input
|
|
815
|
+
arguments in subsequent caches. However, this is still useful.
|
|
816
|
+
|
|
817
|
+
Do it for all combinations of compression
|
|
818
|
+
|
|
819
|
+
"""
|
|
820
|
+
|
|
821
|
+
verbose = False
|
|
822
|
+
|
|
823
|
+
for compression_store in [False, True]:
|
|
824
|
+
for compression_retrieve in [False, True]:
|
|
825
|
+
|
|
826
|
+
if verbose: print 'clear cache'
|
|
827
|
+
a = cache(Dummy, 'clear')
|
|
828
|
+
|
|
829
|
+
if verbose: print 'cache for first time'
|
|
830
|
+
a_ref = cache(Dummy, args=(9, 10),
|
|
831
|
+
compression=compression_store,
|
|
832
|
+
verbose=verbose)
|
|
833
|
+
|
|
834
|
+
if verbose: print 'Check that cache is there'
|
|
835
|
+
assert cache(Dummy, args=(9, 10), test=1,
|
|
836
|
+
compression=compression_retrieve,
|
|
837
|
+
verbose=verbose)
|
|
838
|
+
|
|
839
|
+
if verbose: print 'Check cached result'
|
|
840
|
+
a = cache(Dummy, args=(9, 10),
|
|
841
|
+
compression=compression_store,
|
|
842
|
+
verbose=verbose)
|
|
843
|
+
assert a.__dict__ == a_ref.__dict__
|
|
844
|
+
|
|
845
|
+
|
|
846
|
+
|
|
847
|
+
# # NOTE (Ole): This test has been commented out because,
|
|
848
|
+
# # although the test will pass (not anymore!)
|
|
849
|
+
# # inside the caching dir and also at the anuga_core level,
|
|
850
|
+
# # it won't pass at the anuga_core/source/anuga level.
|
|
851
|
+
# # It may have to do with the comments above.
|
|
852
|
+
# #
|
|
853
|
+
# # But this is a very nice test to run occasionally within the caching
|
|
854
|
+
# # area
|
|
855
|
+
# def Xtest_objects_are_created_memory(self):
|
|
856
|
+
# """
|
|
857
|
+
#
|
|
858
|
+
# This test shows how instances can be created from cache
|
|
859
|
+
# as long as input arguments are unchanged - even if the class
|
|
860
|
+
# lives in different memory locations.
|
|
861
|
+
#
|
|
862
|
+
# This is using cache created in the main program below
|
|
863
|
+
# """
|
|
864
|
+
#
|
|
865
|
+
# verbose = True # False
|
|
866
|
+
#
|
|
867
|
+
# # Redefine class Dummy_memorytest
|
|
868
|
+
# class Dummy_memorytest:
|
|
869
|
+
# def __init__(self, value, another):
|
|
870
|
+
# self.value = value
|
|
871
|
+
#
|
|
872
|
+
# # Make sure that class has been redefined to another address
|
|
873
|
+
# print
|
|
874
|
+
# print 'Initial_addr ', initial_addr
|
|
875
|
+
# print 'Redefined addr', repr(Dummy_memorytest)
|
|
876
|
+
# msg = 'Redefined class ended up at same memory location as '
|
|
877
|
+
# msg += 'original class making this test irrelevant. Try to run '
|
|
878
|
+
# msg += 'it again and see if this error goes away.'
|
|
879
|
+
# msg += 'If it persists contact Ole.Nielsen@ga.gov.au'
|
|
880
|
+
# assert initial_addr != repr(Dummy_memorytest), msg
|
|
881
|
+
#
|
|
882
|
+
#
|
|
883
|
+
# retrieve_cache(Dummy_memorytest, verbose=verbose)
|
|
884
|
+
#
|
|
885
|
+
# # Cache created for use with 'test_objects_are_created_memory'
|
|
886
|
+
# # initial_addr = `Dummy_memorytest`
|
|
887
|
+
# # clear_and_create_cache(Dummy_memorytest, verbose=False)
|
|
888
|
+
|
|
889
|
+
|
|
890
|
+
|
|
891
|
+
#-------------------------------------------------------------
|
|
892
|
+
if __name__ == "__main__":
|
|
893
|
+
suite = unittest.makeSuite(Test_Caching, 'test')
|
|
894
|
+
runner = unittest.TextTestRunner()
|
|
895
|
+
runner.run(suite)
|